AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368920 MtrunA17_Chr3g0112791 91.705 217 14 1 1 213 1 217 6.19e-143 397
Msa0368920 MtrunA17_Chr5g0436201 58.019 212 60 7 26 213 5 211 9.57e-72 217
Msa0368920 MtrunA17_Chr7g0240961 56.627 166 54 7 53 209 74 230 1.18e-50 164
Msa0368920 MtrunA17_Chr3g0112811 69.466 131 30 5 10 138 1 123 7.68e-48 153
Msa0368920 MtrunA17_Chr8g0379191 34.498 229 119 9 3 211 92 309 7.35e-29 109
Msa0368920 MtrunA17_Chr4g0045171 32.889 225 128 7 3 211 81 298 2.55e-28 108
Msa0368920 MtrunA17_Chr2g0284111 40.000 135 61 3 84 207 153 278 5.80e-28 107
Msa0368920 MtrunA17_Chr3g0120281 42.188 64 28 1 87 150 240 294 4.76e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368920 AT5G05830.1 53.226 186 67 6 40 213 26 203 5.25e-51 164
Msa0368920 AT5G01070.1 50.735 136 55 4 84 213 75 204 3.42e-37 129
Msa0368920 AT2G37950.1 45.865 133 61 2 84 213 81 205 2.31e-35 124
Msa0368920 AT5G59000.1 40.132 152 59 3 86 209 80 227 5.05e-27 103
Msa0368920 AT2G34200.2 37.209 129 71 4 84 210 99 219 3.98e-19 82.4
Msa0368920 AT2G34200.1 37.209 129 71 4 84 210 99 219 3.98e-19 82.4
Msa0368920 AT5G60580.1 43.750 64 27 1 87 150 257 311 5.59e-11 61.6
Msa0368920 AT5G60580.3 43.750 64 27 1 87 150 257 311 5.59e-11 61.6
Msa0368920 AT5G60580.4 43.750 64 27 1 87 150 257 311 5.63e-11 61.6
Msa0368920 AT5G60580.2 43.750 64 27 1 87 150 257 311 5.63e-11 61.6

Find 71 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATTGTCTTCTCATT+TGG 0.163355 3_1:-65888694 Msa0368920:three_prime_UTR
TCCTGAAGTTATAGGATTTC+AGG 0.175642 3_1:+65888999 None:intergenic
CTTCTTTCAACAAACCTTAA+TGG 0.186312 3_1:-65891620 Msa0368920:five_prime_UTR
CTGCTAGATCCTGAAGTTAT+AGG 0.214776 3_1:+65888991 None:intergenic
CCAGCTTCCAAACATAATTT+AGG 0.216231 3_1:-65888802 Msa0368920:three_prime_UTR
TTCTTATTGTCTTCTCATTT+GGG 0.244244 3_1:-65888693 Msa0368920:three_prime_UTR
TTAACTCTTAGTTATTAATT+TGG 0.263671 3_1:+65891728 None:intergenic
ATGTGCTGAAGCTTGGTTTA+AGG 0.266567 3_1:-65891214 Msa0368920:CDS
GAGATCATGAATACCCATTA+AGG 0.284798 3_1:+65891606 None:intergenic
TTCTTTCAACAAACCTTAAT+GGG 0.300039 3_1:-65891619 Msa0368920:five_prime_UTR
AATCTTCATGTCATGGCTTT+GGG 0.337486 3_1:+65891578 None:intergenic
GAATCTTCATGTCATGGCTT+TGG 0.342745 3_1:+65891577 None:intergenic
GAATTTCCTCCTTGCCTGTA+TGG 0.353899 3_1:-65889067 Msa0368920:CDS
CTTCTCATTTGGGTTATGAA+TGG 0.367231 3_1:-65888683 Msa0368920:three_prime_UTR
GATACTTCCTAAATTATGTT+TGG 0.383113 3_1:+65888795 None:intergenic
GATGATGACCAACATGAATC+TGG 0.390187 3_1:-65891294 Msa0368920:CDS
TCATTGCCTTTGTCATCTCC+TGG 0.395813 3_1:-65889044 Msa0368920:CDS
TCCATTGCTAGAAATGTATC+TGG 0.396063 3_1:-65889204 Msa0368920:CDS
TCCTGAAATCCTATAACTTC+AGG 0.402202 3_1:-65889000 Msa0368920:exon
ACACGAACATCCTAGTTCAA+TGG 0.404206 3_1:+65891266 None:intergenic
TAGGATTTGTCATCTCAGTA+TGG 0.410659 3_1:-65891331 Msa0368920:CDS
TTGTTGAAAGAAGAAGAAAA+AGG 0.424162 3_1:+65891630 None:intergenic
CCTAAATTATGTTTGGAAGC+TGG 0.430685 3_1:+65888802 None:intergenic
CACGAACATCCTAGTTCAAT+GGG 0.431600 3_1:+65891267 None:intergenic
CATGGTACCTGTGTTTATAA+TGG 0.435036 3_1:+65888933 None:intergenic
GTAAGATGATTGAGGATTTG+TGG 0.435692 3_1:-65888968 Msa0368920:three_prime_UTR
AAGTTATAACTTATAATAAC+AGG 0.436688 3_1:+65888736 None:intergenic
GGCGCTGAGTTTCTGCAGGT+GGG 0.443589 3_1:+65889106 None:intergenic
CGCTGAGTTTCTGCAGGTGG+GGG 0.452158 3_1:+65889108 None:intergenic
ATGTTGTGTGGATGTGGATC+TGG 0.468588 3_1:-65891394 Msa0368920:CDS
ATAAACAATGTGCTGAAGCT+TGG 0.473834 3_1:-65891221 Msa0368920:CDS
ATGTTCGTGTAAAGATGATT+TGG 0.486734 3_1:-65891253 Msa0368920:CDS
ATGGTGTGAAGAGAGATTGT+AGG 0.503740 3_1:-65891350 Msa0368920:CDS
GTCGGAATGTTGTGTGGATG+TGG 0.513482 3_1:-65891400 Msa0368920:CDS
TGAAGCTTGGTTTAAGGTCA+AGG 0.518133 3_1:-65891208 Msa0368920:CDS
AGGCGCTGAGTTTCTGCAGG+TGG 0.521622 3_1:+65889105 None:intergenic
ACCATCGAAAATGTCCTTCA+CGG 0.522737 3_1:-65891543 Msa0368920:CDS
CCATCGAAAATGTCCTTCAC+GGG 0.523616 3_1:-65891542 Msa0368920:CDS
ACCAGATACATTTCTAGCAA+TGG 0.523936 3_1:+65889203 None:intergenic
GCGCTGAGTTTCTGCAGGTG+GGG 0.539720 3_1:+65889107 None:intergenic
TGTTCAAGTAAGTAACAAGA+AGG 0.544984 3_1:-65888868 Msa0368920:three_prime_UTR
AGTTGAGAATCTTCATGTCA+TGG 0.547212 3_1:+65891571 None:intergenic
CTATAACTTCAGGATCTAGC+AGG 0.548028 3_1:-65888990 Msa0368920:three_prime_UTR
TCTGGGACTCCCATTGAACT+AGG 0.554284 3_1:-65891276 Msa0368920:CDS
GACAAAGGCAATGACCATAC+AGG 0.555573 3_1:+65889053 None:intergenic
AACTCTACAGCGGAGAATGT+GGG 0.557154 3_1:-65891459 Msa0368920:CDS
GGATGTGGATCTGGAGAGTG+TGG 0.567109 3_1:-65891385 Msa0368920:CDS
AAACTCAGCGCCTACTCCAC+CGG 0.567388 3_1:-65889095 Msa0368920:CDS
AGTAGGCGCTGAGTTTCTGC+AGG 0.570474 3_1:+65889102 None:intergenic
GAACTCTACAGCGGAGAATG+TGG 0.583457 3_1:-65891460 Msa0368920:CDS
TCTAGCAGGTAAGATGATTG+AGG 0.586586 3_1:-65888976 Msa0368920:three_prime_UTR
AGTGTCTTCTGTGTCTGTGT+CGG 0.586898 3_1:-65891418 Msa0368920:CDS
ATTGAGACTGCATTGTGTTG+AGG 0.593238 3_1:-65888636 Msa0368920:three_prime_UTR
ATGATGACCAACATGAATCT+GGG 0.596167 3_1:-65891293 Msa0368920:CDS
TACAGAACTTGTGAAATCTG+TGG 0.602282 3_1:-65889228 Msa0368920:intron
AATAAGAAGCAGTTGAGACA+AGG 0.603597 3_1:+65888708 None:intergenic
AGTGTGGTTAATGTTGATGA+TGG 0.605562 3_1:-65891369 Msa0368920:CDS
GAAGCTTGGTTTAAGGTCAA+GGG 0.608837 3_1:-65891207 Msa0368920:CDS
GTTCAAGTAAGTAACAAGAA+GGG 0.613575 3_1:-65888867 Msa0368920:three_prime_UTR
GTCTGTGTCGGAATGTTGTG+TGG 0.613835 3_1:-65891406 Msa0368920:CDS
ATATTGAAAATGCATCTCCT+CGG 0.622695 3_1:-65891482 Msa0368920:CDS
TGGGAGTCCCAGATTCATGT+TGG 0.638328 3_1:+65891286 None:intergenic
TCTGTGACCATTATAAACAC+AGG 0.659282 3_1:-65888940 Msa0368920:three_prime_UTR
AGGCAATGACCATACAGGCA+AGG 0.660733 3_1:+65889058 None:intergenic
CATCGAAAATGTCCTTCACG+GGG 0.665927 3_1:-65891541 Msa0368920:CDS
TTCTCCGCTGTAGAGTTCCG+AGG 0.672525 3_1:+65891465 None:intergenic
CAATGACCATACAGGCAAGG+AGG 0.693990 3_1:+65889061 None:intergenic
AAGTTGAAATGACAGAACAG+TGG 0.697944 3_1:-65889173 Msa0368920:CDS
ATCTCCTCGGAACTCTACAG+CGG 0.720267 3_1:-65891469 Msa0368920:CDS
AGAGACGCGTGAATTGAACA+TGG 0.743408 3_1:+65888915 None:intergenic
ATCGAAAATGTCCTTCACGG+GGG 0.766428 3_1:-65891540 Msa0368920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAAAAAAAATGACT+AGG - chr3_1:65889643-65889662 Msa0368920:intron 10.0%
!! TTAACTCTTAGTTATTAATT+TGG + chr3_1:65888627-65888646 None:intergenic 15.0%
!!! ATTAACATTGTTTCTTAATT+AGG - chr3_1:65889193-65889212 Msa0368920:CDS 15.0%
!! TCAAAAATCAAGTAAATTAT+TGG - chr3_1:65889756-65889775 Msa0368920:intron 15.0%
!! CAAAAATCAAGTAAATTATT+GGG - chr3_1:65889757-65889776 Msa0368920:intron 15.0%
!!! CACTTTTTGTTTTTAAATTA+CGG - chr3_1:65890273-65890292 Msa0368920:intron 15.0%
!!! TTTTAGAAAAACATGTTATA+TGG + chr3_1:65890300-65890319 None:intergenic 15.0%
!!! TTAATTCTTTTATTCCATTT+TGG - chr3_1:65890612-65890631 Msa0368920:intron 15.0%
!!! TAATTCTTTTATTCCATTTT+GGG - chr3_1:65890613-65890632 Msa0368920:intron 15.0%
!! TATTTATAGAAATATAAGGA+TGG + chr3_1:65891006-65891025 None:intergenic 15.0%
!!! GAAGTATTTATAGAAATATA+AGG + chr3_1:65891010-65891029 None:intergenic 15.0%
!! TTTCTATAAATACTTCTAAT+TGG - chr3_1:65891014-65891033 Msa0368920:intron 15.0%
!!! AGTTAACTGTTTTATTTTTT+TGG - chr3_1:65891073-65891092 Msa0368920:intron 15.0%
!! AAGTTATAACTTATAATAAC+AGG + chr3_1:65891619-65891638 None:intergenic 15.0%
!!! TGATTTTTGAATAATAGAAC+AGG + chr3_1:65889746-65889765 None:intergenic 20.0%
!!! AAATTAAGTTGTTTATCCAA+AGG - chr3_1:65890030-65890049 Msa0368920:intron 20.0%
!!! GTTAAACTACTATAATCTTT+TGG - chr3_1:65890667-65890686 Msa0368920:intron 20.0%
!!! CATTATCTTATTTAATAGAC+TGG - chr3_1:65890691-65890710 Msa0368920:intron 20.0%
!!! TGCAAAAATATTTTTGTTGT+TGG - chr3_1:65891515-65891534 Msa0368920:CDS 20.0%
! TTGTTGAAAGAAGAAGAAAA+AGG + chr3_1:65888725-65888744 None:intergenic 25.0%
! TTCTTTCAACAAACCTTAAT+GGG - chr3_1:65888733-65888752 Msa0368920:three_prime_UTR 25.0%
! TTTCTTAATTAGGTGTGTAA+TGG - chr3_1:65889203-65889222 Msa0368920:CDS 25.0%
! TTCTTAATTAGGTGTGTAAT+GGG - chr3_1:65889204-65889223 Msa0368920:CDS 25.0%
!!! CAAAGCATATCATTTTTATC+TGG + chr3_1:65889558-65889577 None:intergenic 25.0%
!! TTGTGTAGTAAATAGTTTGT+AGG - chr3_1:65889575-65889594 Msa0368920:intron 25.0%
! TATCATAATTGTGCTTGAAT+TGG + chr3_1:65889602-65889621 None:intergenic 25.0%
!! TTTTTGAATAATAGAACAGG+AGG + chr3_1:65889743-65889762 None:intergenic 25.0%
!! TAAACAAATGTTTCTACCTT+TGG + chr3_1:65890049-65890068 None:intergenic 25.0%
!!! TTTGCTTTTATGTGATGTTA+CGG - chr3_1:65890194-65890213 Msa0368920:intron 25.0%
! CTGCGATATAAAAACATTTA+GGG + chr3_1:65890468-65890487 None:intergenic 25.0%
! GAAAGTCTGAAAATTGATAA+TGG - chr3_1:65890575-65890594 Msa0368920:intron 25.0%
! CCAAATTTACATGAATCAAA+AGG + chr3_1:65890756-65890775 None:intergenic 25.0%
!!! CCTTTTGATTCATGTAAATT+TGG - chr3_1:65890753-65890772 Msa0368920:intron 25.0%
! TGTAAATTTGGAAAACATCT+TGG - chr3_1:65890765-65890784 Msa0368920:intron 25.0%
!!! TGTGGCTGAATTTTTTATAT+TGG - chr3_1:65890795-65890814 Msa0368920:intron 25.0%
! GATACTTCCTAAATTATGTT+TGG + chr3_1:65891560-65891579 None:intergenic 25.0%
! TTCTTATTGTCTTCTCATTT+GGG - chr3_1:65891659-65891678 Msa0368920:five_prime_UTR 25.0%
CTTCTTTCAACAAACCTTAA+TGG - chr3_1:65888732-65888751 Msa0368920:three_prime_UTR 30.0%
! TGCATTTTCAATATTGTCGA+CGG + chr3_1:65888864-65888883 None:intergenic 30.0%
ATATTGAAAATGCATCTCCT+CGG - chr3_1:65888870-65888889 Msa0368920:three_prime_UTR 30.0%
ATGTTCGTGTAAAGATGATT+TGG - chr3_1:65889099-65889118 Msa0368920:CDS 30.0%
AATGGGTATAGACGAATATA+AGG - chr3_1:65889800-65889819 Msa0368920:intron 30.0%
! TTGTTTTCAGCTTATCTCAA+GGG - chr3_1:65889920-65889939 Msa0368920:intron 30.0%
!! ACAACTTAATTTGCAGCTTA+TGG + chr3_1:65890022-65890041 None:intergenic 30.0%
AACAATATGAGAGCTTACAA+AGG + chr3_1:65890150-65890169 None:intergenic 30.0%
CATATTGTTTCCCTATTAGA+AGG - chr3_1:65890161-65890180 Msa0368920:intron 30.0%
GATTCTACTTCCTTCTAATA+GGG + chr3_1:65890174-65890193 None:intergenic 30.0%
AGATTCTACTTCCTTCTAAT+AGG + chr3_1:65890175-65890194 None:intergenic 30.0%
! GAAACAGTTTAGTCTTCTAA+GGG - chr3_1:65890216-65890235 Msa0368920:intron 30.0%
! AAAAACATTTAGGGTGTGTT+TGG + chr3_1:65890459-65890478 None:intergenic 30.0%
CCTGCGATATAAAAACATTT+AGG + chr3_1:65890469-65890488 None:intergenic 30.0%
!! CCTAAATGTTTTTATATCGC+AGG - chr3_1:65890466-65890485 Msa0368920:intron 30.0%
AGTTGAATCAAATCACAACT+AGG + chr3_1:65890551-65890570 None:intergenic 30.0%
!!! CTTTTATTCCATTTTGGGTT+TGG - chr3_1:65890618-65890637 Msa0368920:intron 30.0%
! CAAAAGGTTACTCTTTTCTA+TGG + chr3_1:65890740-65890759 None:intergenic 30.0%
!!! GCTGAATTTTTTATATTGGC+TGG - chr3_1:65890799-65890818 Msa0368920:intron 30.0%
! GCAATATTTTACCATCAAAC+AGG + chr3_1:65890844-65890863 None:intergenic 30.0%
ATGCTTGAATTCACATACTA+TGG + chr3_1:65890895-65890914 None:intergenic 30.0%
!!! ATTTGTCACTTTTCTACCTT+TGG + chr3_1:65890965-65890984 None:intergenic 30.0%
! AAAAGTGACAAATGTTGGTT+AGG - chr3_1:65890972-65890991 Msa0368920:intron 30.0%
ATAGAAATATAAGGATGGCT+TGG + chr3_1:65891001-65891020 None:intergenic 30.0%
TGTTCAAGTAAGTAACAAGA+AGG - chr3_1:65891484-65891503 Msa0368920:CDS 30.0%
GTTCAAGTAAGTAACAAGAA+GGG - chr3_1:65891485-65891504 Msa0368920:CDS 30.0%
! TCATATTTTTCACAACATGC+AGG - chr3_1:65891580-65891599 Msa0368920:CDS 30.0%
CTTCTTATTGTCTTCTCATT+TGG - chr3_1:65891658-65891677 Msa0368920:five_prime_UTR 30.0%
GAGATCATGAATACCCATTA+AGG + chr3_1:65888749-65888768 None:intergenic 35.0%
AATCTTCATGTCATGGCTTT+GGG + chr3_1:65888777-65888796 None:intergenic 35.0%
AGTTGAGAATCTTCATGTCA+TGG + chr3_1:65888784-65888803 None:intergenic 35.0%
! GCATTTTCAATATTGTCGAC+GGG + chr3_1:65888863-65888882 None:intergenic 35.0%
! AGTGTGGTTAATGTTGATGA+TGG - chr3_1:65888983-65889002 Msa0368920:three_prime_UTR 35.0%
TAGGATTTGTCATCTCAGTA+TGG - chr3_1:65889021-65889040 Msa0368920:CDS 35.0%
ATGATGACCAACATGAATCT+GGG - chr3_1:65889059-65889078 Msa0368920:CDS 35.0%
ATAAACAATGTGCTGAAGCT+TGG - chr3_1:65889131-65889150 Msa0368920:CDS 35.0%
!! TGTAGCATTGACACTTATGA+TGG - chr3_1:65889287-65889306 Msa0368920:intron 35.0%
ACTCACTATTAGTGCTTCAT+AGG - chr3_1:65889404-65889423 Msa0368920:intron 35.0%
ACATGAGTGACTCAAATAGT+AGG + chr3_1:65889439-65889458 None:intergenic 35.0%
TGACATGTGCTGAATATTCT+CGG - chr3_1:65889458-65889477 Msa0368920:intron 35.0%
AATATTCTCGGAGGTTTAGA+TGG - chr3_1:65889470-65889489 Msa0368920:intron 35.0%
ACTAGATTGAGACATGCTAT+TGG - chr3_1:65889519-65889538 Msa0368920:intron 35.0%
! TACCCATTTTACCCTTTTCT+GGG + chr3_1:65889788-65889807 None:intergenic 35.0%
! ATACCCATTTTACCCTTTTC+TGG + chr3_1:65889789-65889808 None:intergenic 35.0%
ATGATTGTCTGAGAGAACTT+AGG - chr3_1:65889871-65889890 Msa0368920:intron 35.0%
!! GTTGTTTTCAGCTTATCTCA+AGG - chr3_1:65889919-65889938 Msa0368920:intron 35.0%
TTTGTTTAGATAACCAGAGC+CGG - chr3_1:65890061-65890080 Msa0368920:intron 35.0%
TATCAAACATGATGTGCACT+GGG + chr3_1:65890111-65890130 None:intergenic 35.0%
ATATCAAACATGATGTGCAC+TGG + chr3_1:65890112-65890131 None:intergenic 35.0%
! GGAAACAGTTTAGTCTTCTA+AGG - chr3_1:65890215-65890234 Msa0368920:intron 35.0%
! TGTGTTTGGATTGATGGTAT+AGG - chr3_1:65890239-65890258 Msa0368920:intron 35.0%
! TTTGGATTGATGGTATAGGA+GGG - chr3_1:65890243-65890262 Msa0368920:intron 35.0%
TTTATATCGCAGGTACTTAG+AGG - chr3_1:65890476-65890495 Msa0368920:intron 35.0%
! TCCAACTTTTATGTGACAGT+TGG + chr3_1:65890717-65890736 None:intergenic 35.0%
AAACATCTTGGAAACTCTTG+TGG - chr3_1:65890777-65890796 Msa0368920:intron 35.0%
ATTGGCTGGATTAATTCTCA+TGG - chr3_1:65890813-65890832 Msa0368920:intron 35.0%
AAGTAGTTGTTCAAGTCCAA+AGG - chr3_1:65890946-65890965 Msa0368920:intron 35.0%
GGTAGAAAAGTGACAAATGT+TGG - chr3_1:65890967-65890986 Msa0368920:intron 35.0%
TACAGAACTTGTGAAATCTG+TGG - chr3_1:65891124-65891143 Msa0368920:intron 35.0%
TCCATTGCTAGAAATGTATC+TGG - chr3_1:65891148-65891167 Msa0368920:intron 35.0%
!! ACCAGATACATTTCTAGCAA+TGG + chr3_1:65891152-65891171 None:intergenic 35.0%
AAGTTGAAATGACAGAACAG+TGG - chr3_1:65891179-65891198 Msa0368920:intron 35.0%
CAAGGAGGAAATTCAAAAAC+CGG + chr3_1:65891279-65891298 None:intergenic 35.0%
TCCTGAAATCCTATAACTTC+AGG - chr3_1:65891352-65891371 Msa0368920:CDS 35.0%
TCCTGAAGTTATAGGATTTC+AGG + chr3_1:65891356-65891375 None:intergenic 35.0%
GTAAGATGATTGAGGATTTG+TGG - chr3_1:65891384-65891403 Msa0368920:CDS 35.0%
TCTGTGACCATTATAAACAC+AGG - chr3_1:65891412-65891431 Msa0368920:CDS 35.0%
CATGGTACCTGTGTTTATAA+TGG + chr3_1:65891422-65891441 None:intergenic 35.0%
CCTAAATTATGTTTGGAAGC+TGG + chr3_1:65891553-65891572 None:intergenic 35.0%
CCAGCTTCCAAACATAATTT+AGG - chr3_1:65891550-65891569 Msa0368920:CDS 35.0%
AATAAGAAGCAGTTGAGACA+AGG + chr3_1:65891647-65891666 None:intergenic 35.0%
! CTTCTCATTTGGGTTATGAA+TGG - chr3_1:65891669-65891688 Msa0368920:five_prime_UTR 35.0%
GAATCTTCATGTCATGGCTT+TGG + chr3_1:65888778-65888797 None:intergenic 40.0%
ACCATCGAAAATGTCCTTCA+CGG - chr3_1:65888809-65888828 Msa0368920:three_prime_UTR 40.0%
ATGGTGTGAAGAGAGATTGT+AGG - chr3_1:65889002-65889021 Msa0368920:exon 40.0%
GATGATGACCAACATGAATC+TGG - chr3_1:65889058-65889077 Msa0368920:CDS 40.0%
CACGAACATCCTAGTTCAAT+GGG + chr3_1:65889088-65889107 None:intergenic 40.0%
ACACGAACATCCTAGTTCAA+TGG + chr3_1:65889089-65889108 None:intergenic 40.0%
ATGTGCTGAAGCTTGGTTTA+AGG - chr3_1:65889138-65889157 Msa0368920:CDS 40.0%
! TGAAGCTTGGTTTAAGGTCA+AGG - chr3_1:65889144-65889163 Msa0368920:CDS 40.0%
! GAAGCTTGGTTTAAGGTCAA+GGG - chr3_1:65889145-65889164 Msa0368920:CDS 40.0%
AAGTGAAACTTGCAAGATGC+AGG + chr3_1:65889713-65889732 None:intergenic 40.0%
TGTCCCAGAAAAGGGTAAAA+TGG - chr3_1:65889782-65889801 Msa0368920:intron 40.0%
GTCCCAGAAAAGGGTAAAAT+GGG - chr3_1:65889783-65889802 Msa0368920:intron 40.0%
TTGTTTAGATAACCAGAGCC+GGG - chr3_1:65890062-65890081 Msa0368920:intron 40.0%
! CTTTACTGAATTTTCGTCCC+CGG + chr3_1:65890083-65890102 None:intergenic 40.0%
! TAGTCTTCTAAGGGTGTGTT+TGG - chr3_1:65890225-65890244 Msa0368920:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+TGG - chr3_1:65890233-65890252 Msa0368920:intron 40.0%
! GTTTGGATTGATGGTATAGG+AGG - chr3_1:65890242-65890261 Msa0368920:intron 40.0%
! TTGGATTGATGGTATAGGAG+GGG - chr3_1:65890244-65890263 Msa0368920:intron 40.0%
! ACATTTAGGGTGTGTTTGGA+TGG + chr3_1:65890455-65890474 None:intergenic 40.0%
ATGGACTTCATCTGGAGAAT+GGG - chr3_1:65890499-65890518 Msa0368920:intron 40.0%
GCCAACTGTCACATAAAAGT+TGG - chr3_1:65890713-65890732 Msa0368920:intron 40.0%
! TCATGGCTTTACCTGTTTGA+TGG - chr3_1:65890830-65890849 Msa0368920:intron 40.0%
GTGAATTCAAGCATGTACTG+CGG - chr3_1:65890901-65890920 Msa0368920:intron 40.0%
AATTCAAAAACCGGTGGAGT+AGG + chr3_1:65891270-65891289 None:intergenic 40.0%
AAAAAGCCAGGAGATGACAA+AGG + chr3_1:65891317-65891336 None:intergenic 40.0%
CAAATAGAAGCGAAAAAGCC+AGG + chr3_1:65891329-65891348 None:intergenic 40.0%
CTGCTAGATCCTGAAGTTAT+AGG + chr3_1:65891364-65891383 None:intergenic 40.0%
CTATAACTTCAGGATCTAGC+AGG - chr3_1:65891362-65891381 Msa0368920:CDS 40.0%
TCTAGCAGGTAAGATGATTG+AGG - chr3_1:65891376-65891395 Msa0368920:CDS 40.0%
ATTGAGACTGCATTGTGTTG+AGG - chr3_1:65891716-65891735 Msa0368920:five_prime_UTR 40.0%
CCATCGAAAATGTCCTTCAC+GGG - chr3_1:65888810-65888829 Msa0368920:three_prime_UTR 45.0%
CATCGAAAATGTCCTTCACG+GGG - chr3_1:65888811-65888830 Msa0368920:three_prime_UTR 45.0%
ATCGAAAATGTCCTTCACGG+GGG - chr3_1:65888812-65888831 Msa0368920:three_prime_UTR 45.0%
AACTCTACAGCGGAGAATGT+GGG - chr3_1:65888893-65888912 Msa0368920:three_prime_UTR 45.0%
AGTGTCTTCTGTGTCTGTGT+CGG - chr3_1:65888934-65888953 Msa0368920:three_prime_UTR 45.0%
ATGTTGTGTGGATGTGGATC+TGG - chr3_1:65888958-65888977 Msa0368920:three_prime_UTR 45.0%
CATGTGTCAGTGTGTTGTGT+CGG + chr3_1:65889322-65889341 None:intergenic 45.0%
CATGTGCTGAATATTCTCGG+AGG - chr3_1:65889461-65889480 Msa0368920:intron 45.0%
AGGTGCATCAGCATTTGCAT+AGG - chr3_1:65889663-65889682 Msa0368920:intron 45.0%
TATTGGGTGTGTCCCAGAAA+AGG - chr3_1:65889773-65889792 Msa0368920:intron 45.0%
ATTGGGTGTGTCCCAGAAAA+GGG - chr3_1:65889774-65889793 Msa0368920:intron 45.0%
TGTTTAGATAACCAGAGCCG+GGG - chr3_1:65890063-65890082 Msa0368920:intron 45.0%
CGGGGACGAAAATTCAGTAA+AGG - chr3_1:65890081-65890100 Msa0368920:intron 45.0%
! ATTGATGGTATAGGAGGGGA+AGG - chr3_1:65890248-65890267 Msa0368920:intron 45.0%
TTTGGATGGAGGGTTTAGGA+GGG + chr3_1:65890441-65890460 None:intergenic 45.0%
TGTGTTTGGATGGAGGGTTT+AGG + chr3_1:65890445-65890464 None:intergenic 45.0%
TTAGGGTGTGTTTGGATGGA+GGG + chr3_1:65890451-65890470 None:intergenic 45.0%
! TTTAGGGTGTGTTTGGATGG+AGG + chr3_1:65890452-65890471 None:intergenic 45.0%
TATCGCAGGTACTTAGAGGA+TGG - chr3_1:65890480-65890499 Msa0368920:intron 45.0%
! CTTAGAGGATGGACTTCATC+TGG - chr3_1:65890491-65890510 Msa0368920:intron 45.0%
! GATGGACTTCATCTGGAGAA+TGG - chr3_1:65890498-65890517 Msa0368920:intron 45.0%
GGTCAACTCCAAACCCAAAA+TGG + chr3_1:65890629-65890648 None:intergenic 45.0%
AACAGAGCAGAGTGCACAAT+TGG + chr3_1:65890650-65890669 None:intergenic 45.0%
GGAGGAAATTCAAAAACCGG+TGG + chr3_1:65891276-65891295 None:intergenic 45.0%
GAATTTCCTCCTTGCCTGTA+TGG - chr3_1:65891285-65891304 Msa0368920:CDS 45.0%
GACAAAGGCAATGACCATAC+AGG + chr3_1:65891302-65891321 None:intergenic 45.0%
TCATTGCCTTTGTCATCTCC+TGG - chr3_1:65891308-65891327 Msa0368920:CDS 45.0%
AGAGACGCGTGAATTGAACA+TGG + chr3_1:65891440-65891459 None:intergenic 45.0%
!!! TTTTTAATTATTTAGAAAAA+GGG + chr3_1:65889633-65889652 None:intergenic 5.0%
!!! TTTTTTAATTATTTAGAAAA+AGG + chr3_1:65889634-65889653 None:intergenic 5.0%
! CCCGTGAAGGACATTTTCGA+TGG + chr3_1:65888813-65888832 None:intergenic 50.0%
ATCTCCTCGGAACTCTACAG+CGG - chr3_1:65888883-65888902 Msa0368920:three_prime_UTR 50.0%
GAACTCTACAGCGGAGAATG+TGG - chr3_1:65888892-65888911 Msa0368920:three_prime_UTR 50.0%
GTCTGTGTCGGAATGTTGTG+TGG - chr3_1:65888946-65888965 Msa0368920:three_prime_UTR 50.0%
GTCGGAATGTTGTGTGGATG+TGG - chr3_1:65888952-65888971 Msa0368920:three_prime_UTR 50.0%
TGGGAGTCCCAGATTCATGT+TGG + chr3_1:65889069-65889088 None:intergenic 50.0%
! TCTGGGACTCCCATTGAACT+AGG - chr3_1:65889076-65889095 Msa0368920:CDS 50.0%
TTGGATGGAGGGTTTAGGAG+GGG + chr3_1:65890440-65890459 None:intergenic 50.0%
GTTTGGATGGAGGGTTTAGG+AGG + chr3_1:65890442-65890461 None:intergenic 50.0%
CAATGACCATACAGGCAAGG+AGG + chr3_1:65891294-65891313 None:intergenic 50.0%
AGGCAATGACCATACAGGCA+AGG + chr3_1:65891297-65891316 None:intergenic 50.0%
ACTTGTCTTGTCCCCCGTGA+AGG + chr3_1:65888826-65888845 None:intergenic 55.0%
TTCTCCGCTGTAGAGTTCCG+AGG + chr3_1:65888890-65888909 None:intergenic 55.0%
GGATGTGGATCTGGAGAGTG+TGG - chr3_1:65888967-65888986 Msa0368920:three_prime_UTR 55.0%
! TGAATTTTCGTCCCCGGCTC+TGG + chr3_1:65890077-65890096 None:intergenic 55.0%
TGGATGGAGGGTTTAGGAGG+GGG + chr3_1:65890439-65890458 None:intergenic 55.0%
!! AGTAGGCGCTGAGTTTCTGC+AGG + chr3_1:65891253-65891272 None:intergenic 55.0%
AAACTCAGCGCCTACTCCAC+CGG - chr3_1:65891257-65891276 Msa0368920:CDS 55.0%
TGGAGGGTTTAGGAGGGGGA+GGG + chr3_1:65890435-65890454 None:intergenic 60.0%
ATGGAGGGTTTAGGAGGGGG+AGG + chr3_1:65890436-65890455 None:intergenic 60.0%
TGAGTTTCTGCAGGTGGGGG+AGG + chr3_1:65891244-65891263 None:intergenic 60.0%
CGCTGAGTTTCTGCAGGTGG+GGG + chr3_1:65891247-65891266 None:intergenic 60.0%
GCGCTGAGTTTCTGCAGGTG+GGG + chr3_1:65891248-65891267 None:intergenic 60.0%
! GGCGCTGAGTTTCTGCAGGT+GGG + chr3_1:65891249-65891268 None:intergenic 60.0%
!! AGGCGCTGAGTTTCTGCAGG+TGG + chr3_1:65891250-65891269 None:intergenic 60.0%
GGTTTAGGAGGGGGAGGGAG+GGG + chr3_1:65890430-65890449 None:intergenic 65.0%
GGGTTTAGGAGGGGGAGGGA+GGG + chr3_1:65890431-65890450 None:intergenic 65.0%
AGGGTTTAGGAGGGGGAGGG+AGG + chr3_1:65890432-65890451 None:intergenic 65.0%
GGTGGGGGAGGTCTAGTTGG+TGG + chr3_1:65891232-65891251 None:intergenic 65.0%
GCAGGTGGGGGAGGTCTAGT+TGG + chr3_1:65891235-65891254 None:intergenic 65.0%
TAGGAGGGGGAGGGAGGGGA+GGG + chr3_1:65890426-65890445 None:intergenic 70.0%
TTAGGAGGGGGAGGGAGGGG+AGG + chr3_1:65890427-65890446 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 65888611 65891763 65888611 ID=Msa0368920;Name=Msa0368920
chr3_1 mRNA 65888611 65891763 65888611 ID=Msa0368920-mRNA-1;Parent=Msa0368920;Name=Msa0368920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|2|406|213
chr3_1 exon 65888611 65889245 65888611 ID=Msa0368920-mRNA-1:exon:13289;Parent=Msa0368920-mRNA-1
chr3_1 exon 65891201 65891763 65891201 ID=Msa0368920-mRNA-1:exon:13288;Parent=Msa0368920-mRNA-1
chr3_1 five_prime_UTR 65891614 65891763 65891614 ID=Msa0368920-mRNA-1:five_prime_utr;Parent=Msa0368920-mRNA-1
chr3_1 CDS 65891201 65891613 65891201 ID=Msa0368920-mRNA-1:cds;Parent=Msa0368920-mRNA-1
chr3_1 CDS 65889017 65889245 65889017 ID=Msa0368920-mRNA-1:cds;Parent=Msa0368920-mRNA-1
chr3_1 three_prime_UTR 65888611 65889016 65888611 ID=Msa0368920-mRNA-1:three_prime_utr;Parent=Msa0368920-mRNA-1
Gene Sequence

>Msa0368920

ATGATCTCTATCTCCCAAAGCCATGACATGAAGATTCTCAACTTTAGTACCATCGAAAATGTCCTTCACGGGGGACAAGACAAGTCTCACGTTGTTGTTCCCGTCGACAATATTGAAAATGCATCTCCTCGGAACTCTACAGCGGAGAATGTGGGAGTGTGTGAGAAAGAGAGAGTGTCTTCTGTGTCTGTGTCGGAATGTTGTGTGGATGTGGATCTGGAGAGTGTGGTTAATGTTGATGATGGTGTGAAGAGAGATTGTAGGATTTGTCATCTCAGTATGGATATGAGAAATCGTGATGATGACCAACATGAATCTGGGACTCCCATTGAACTAGGATGTTCGTGTAAAGATGATTTGGCTGCTGCTCATAAACAATGTGCTGAAGCTTGGTTTAAGGTCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGAAATGTATCTGGTATAGTTGAAGTTGAAATGACAGAACAGTGGAGTGAAGCTAATGATGCATCTGTTCTACCACCAACTAGACCTCCCCCACCTGCAGAAACTCAGCGCCTACTCCACCGGTTTTTGAATTTCCTCCTTGCCTGTATGGTCATTGCCTTTGTCATCTCCTGGCTTTTTCGCTTCTATTTGCATTCCTGA

Protein sequence

>Msa0368920

MISISQSHDMKILNFSTIENVLHGGQDKSHVVVPVDNIENASPRNSTAENVGVCEKERVSSVSVSECCVDVDLESVVNVDDGVKRDCRICHLSMDMRNRDDDQHESGTPIELGCSCKDDLAAAHKQCAEAWFKVKGNKTCEICGSIARNVSGIVEVEMTEQWSEANDASVLPPTRPPPPAETQRLLHRFLNFLLACMVIAFVISWLFRFYLHS*