Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0368920 | XP_003600817.2 | 91.705 | 217 | 14 | 1 | 1 | 213 | 1 | 217 | 6.73e-139 | 397 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0368920 | G7JAK4 | 91.705 | 217 | 14 | 1 | 1 | 213 | 1 | 217 | 3.22e-139 | 397 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006840 | Msa0368920 | 0.857302 | 1.790051e-62 | -8.615850e-47 |
Msa0030070 | Msa0368920 | 0.836358 | 9.807787e-57 | -8.615850e-47 |
Msa0045620 | Msa0368920 | 0.826325 | 2.885925e-54 | -8.615850e-47 |
Msa0050530 | Msa0368920 | 0.859343 | 4.418106e-63 | -8.615850e-47 |
Msa0063190 | Msa0368920 | 0.830052 | 3.648684e-55 | -8.615850e-47 |
Msa0080370 | Msa0368920 | 0.827392 | 1.604250e-54 | -8.615850e-47 |
Msa0080440 | Msa0368920 | 0.813596 | 2.362483e-51 | -8.615850e-47 |
Msa0100600 | Msa0368920 | 0.873246 | 1.706053e-67 | -8.615850e-47 |
Msa0100890 | Msa0368920 | 0.868023 | 8.881027e-66 | -8.615850e-47 |
Msa0108630 | Msa0368920 | 0.825255 | 5.178139e-54 | -8.615850e-47 |
Msa0125590 | Msa0368920 | 0.842072 | 3.232711e-58 | -8.615850e-47 |
Msa0131810 | Msa0368920 | 0.815379 | 9.528731e-52 | -8.615850e-47 |
Msa0168380 | Msa0368920 | 0.829096 | 6.230778e-55 | -8.615850e-47 |
Msa0186180 | Msa0368920 | 0.819763 | 9.792358e-53 | -8.615850e-47 |
Msa0187040 | Msa0368920 | 0.820753 | 5.805485e-53 | -8.615850e-47 |
Msa0192050 | Msa0368920 | 0.800289 | 1.545551e-48 | -8.615850e-47 |
Msa0204970 | Msa0368920 | 0.842498 | 2.493384e-58 | -8.615850e-47 |
Msa0225800 | Msa0368920 | 0.814623 | 1.401882e-51 | -8.615850e-47 |
Msa0237240 | Msa0368920 | 0.817571 | 3.077198e-52 | -8.615850e-47 |
Msa0368920 | Msa0372100 | 0.821116 | 4.790613e-53 | -8.615850e-47 |
Msa0368920 | Msa0373170 | 0.815502 | 8.945583e-52 | -8.615850e-47 |
Msa0368920 | Msa0388250 | 0.847363 | 1.212615e-59 | -8.615850e-47 |
Msa0368920 | Msa0401060 | 0.829552 | 4.828456e-55 | -8.615850e-47 |
Msa0368920 | Msa0416210 | 0.889155 | 3.120299e-73 | -8.615850e-47 |
Msa0368920 | Msa0421750 | 0.802960 | 4.378244e-49 | -8.615850e-47 |
Msa0368920 | Msa0433630 | 0.852148 | 5.580994e-61 | -8.615850e-47 |
Msa0368920 | Msa0467690 | 0.816845 | 4.481942e-52 | -8.615850e-47 |
Msa0368920 | Msa0477480 | 0.803942 | 2.739932e-49 | -8.615850e-47 |
Msa0368920 | Msa0495620 | 0.801066 | 1.072970e-48 | -8.615850e-47 |
Msa0368920 | Msa0508430 | 0.923827 | 1.587811e-89 | -8.615850e-47 |
Msa0368920 | Msa0514020 | 0.824414 | 8.175893e-54 | -8.615850e-47 |
Msa0368920 | Msa0521510 | 0.855559 | 5.816163e-62 | -8.615850e-47 |
Msa0368920 | Msa0521530 | 0.833597 | 4.867269e-56 | -8.615850e-47 |
Msa0368920 | Msa0527850 | 0.801680 | 8.030439e-49 | -8.615850e-47 |
Msa0368920 | Msa0541740 | 0.816443 | 5.514423e-52 | -8.615850e-47 |
Msa0368920 | Msa0544410 | 0.817989 | 2.476616e-52 | -8.615850e-47 |
Msa0368920 | Msa0552570 | 0.807662 | 4.530286e-50 | -8.615850e-47 |
Msa0368920 | Msa0554300 | 0.806130 | 9.550305e-50 | -8.615850e-47 |
Msa0368920 | Msa0571350 | 0.842335 | 2.754209e-58 | -8.615850e-47 |
Msa0368920 | Msa0572830 | 0.853770 | 1.917838e-61 | -8.615850e-47 |
Msa0368920 | Msa0574660 | 0.824305 | 8.674931e-54 | -8.615850e-47 |
Msa0368920 | Msa0575710 | 0.806480 | 8.061266e-50 | -8.615850e-47 |
Msa0368920 | Msa0576330 | 0.827493 | 1.517879e-54 | -8.615850e-47 |
Msa0368920 | Msa0582460 | 0.806295 | 8.819142e-50 | -8.615850e-47 |
Msa0368920 | Msa0584530 | 0.800430 | 1.446836e-48 | -8.615850e-47 |
Msa0368920 | Msa0586200 | 0.800813 | 1.208551e-48 | -8.615850e-47 |
Msa0368920 | Msa0605520 | 0.818375 | 2.025524e-52 | -8.615850e-47 |
Msa0368920 | Msa0623310 | 0.815909 | 7.261067e-52 | -8.615850e-47 |
Msa0368920 | Msa0640800 | 0.820982 | 5.143343e-53 | -8.615850e-47 |
Msa0368920 | Msa0647440 | 0.813464 | 2.525870e-51 | -8.615850e-47 |
Msa0368920 | Msa0648760 | 0.804157 | 2.471265e-49 | -8.615850e-47 |
Msa0368920 | Msa0657210 | 0.809280 | 2.045600e-50 | -8.615850e-47 |
Msa0368920 | Msa0660260 | 0.807604 | 4.660869e-50 | -8.615850e-47 |
Msa0368920 | Msa0663290 | 0.801420 | 9.082447e-49 | -8.615850e-47 |
Msa0368920 | Msa0688620 | 0.813682 | 2.262565e-51 | -8.615850e-47 |
Msa0368920 | Msa0701250 | 0.813758 | 2.176678e-51 | -8.615850e-47 |
Msa0368920 | Msa0706690 | 0.800469 | 1.420566e-48 | -8.615850e-47 |
Msa0368920 | Msa0707260 | 0.817540 | 3.128016e-52 | -8.615850e-47 |
Msa0368920 | Msa0720280 | 0.803461 | 3.447325e-49 | -8.615850e-47 |
Msa0368920 | Msa0749190 | 0.814501 | 1.492206e-51 | -8.615850e-47 |
Msa0368920 | Msa0750520 | 0.817041 | 4.050021e-52 | -8.615850e-47 |
Msa0368920 | Msa0751720 | 0.822931 | 1.819069e-53 | -8.615850e-47 |
Msa0368920 | Msa0767280 | 0.823322 | 1.474439e-53 | -8.615850e-47 |
Msa0368920 | Msa0803140 | 0.809585 | 1.759785e-50 | -8.615850e-47 |
Msa0368920 | Msa0831620 | 0.813438 | 2.559164e-51 | -8.615850e-47 |
Msa0368920 | Msa0831820 | 0.851587 | 8.054325e-61 | -8.615850e-47 |
Msa0368920 | Msa0837680 | 0.803065 | 4.163572e-49 | -8.615850e-47 |
Msa0368920 | Msa0841500 | 0.809422 | 1.906845e-50 | -8.615850e-47 |
Msa0368920 | Msa0846900 | 0.849924 | 2.366085e-60 | -8.615850e-47 |
Msa0368920 | Msa0870020 | 0.802173 | 6.362039e-49 | -8.615850e-47 |
Msa0368920 | Msa0876630 | 0.839550 | 1.481995e-57 | -8.615850e-47 |
Msa0368920 | Msa0900090 | 0.805581 | 1.245566e-49 | -8.615850e-47 |
Msa0368920 | Msa0925330 | 0.820357 | 7.158099e-53 | -8.615850e-47 |
Msa0368920 | Msa0926310 | 0.835285 | 1.834289e-56 | -8.615850e-47 |
Msa0368920 | Msa0926760 | 0.804363 | 2.238850e-49 | -8.615850e-47 |
Msa0368920 | Msa0945900 | 0.801766 | 7.713478e-49 | -8.615850e-47 |
Msa0368920 | Msa0965470 | 0.801592 | 8.371462e-49 | -8.615850e-47 |
Msa0368920 | Msa0966120 | 0.812029 | 5.206707e-51 | -8.615850e-47 |
Msa0368920 | Msa0976380 | 0.813484 | 2.500710e-51 | -8.615850e-47 |
Msa0368920 | Msa0978980 | 0.822647 | 2.118646e-53 | -8.615850e-47 |
Msa0368920 | Msa0999950 | 0.813210 | 2.872906e-51 | -8.615850e-47 |
Msa0368920 | Msa1000780 | 0.829553 | 4.826783e-55 | -8.615850e-47 |
Msa0368920 | Msa1021560 | 0.817043 | 4.046052e-52 | -8.615850e-47 |
Msa0368920 | Msa1071410 | 0.816149 | 6.416894e-52 | -8.615850e-47 |
Msa0368920 | Msa1085680 | 0.823733 | 1.181702e-53 | -8.615850e-47 |
Msa0368920 | Msa1128620 | 0.801904 | 7.226522e-49 | -8.615850e-47 |
Msa0368920 | Msa1138800 | 0.816970 | 4.202152e-52 | -8.615850e-47 |
Msa0368920 | Msa1144990 | 0.829803 | 4.196997e-55 | -8.615850e-47 |
Msa0368920 | Msa1147560 | 0.818578 | 1.822191e-52 | -8.615850e-47 |
Msa0368920 | Msa1148930 | 0.822110 | 2.823025e-53 | -8.615850e-47 |
Msa0368920 | Msa1180840 | 0.810324 | 1.219998e-50 | -8.615850e-47 |
Msa0368920 | Msa1188340 | 0.800933 | 1.141958e-48 | -8.615850e-47 |
Msa0368920 | Msa1220580 | 0.817390 | 3.380320e-52 | -8.615850e-47 |
Msa0368920 | Msa1240940 | 0.811897 | 5.562328e-51 | -8.615850e-47 |
Msa0368920 | Msa1267930 | 0.813504 | 2.475991e-51 | -8.615850e-47 |
Msa0368920 | Msa1278030 | 0.822876 | 1.872959e-53 | -8.615850e-47 |
Msa0368920 | Msa1282300 | 0.826532 | 2.576212e-54 | -8.615850e-47 |
Msa0368920 | Msa1297070 | 0.803838 | 2.880005e-49 | -8.615850e-47 |
Msa0368920 | Msa1334560 | 0.822690 | 2.069690e-53 | -8.615850e-47 |
Msa0368920 | Msa1343460 | 0.806154 | 9.441091e-50 | -8.615850e-47 |
Msa0368920 | Msa1368170 | 0.853837 | 1.835464e-61 | -8.615850e-47 |
Msa0368920 | Msa1371270 | 0.801489 | 8.791455e-49 | -8.615850e-47 |
Msa0368920 | Msa1371800 | 0.825342 | 4.938303e-54 | -8.615850e-47 |
Msa0368920 | Msa1372030 | 0.832927 | 7.147933e-56 | -8.615850e-47 |
Msa0368920 | Msa1376310 | 0.826922 | 2.079038e-54 | -8.615850e-47 |
Msa0368920 | Msa1381800 | 0.813028 | 3.148584e-51 | -8.615850e-47 |
Msa0368920 | Msa1385570 | 0.841898 | 3.594627e-58 | -8.615850e-47 |
Msa0368920 | Msa1389820 | 0.837891 | 3.976966e-57 | -8.615850e-47 |
Msa0368920 | Msa1393560 | 0.810459 | 1.140701e-50 | -8.615850e-47 |
Msa0368920 | Msa1399190 | 0.806044 | 9.959404e-50 | -8.615850e-47 |
Msa0368920 | Msa1420830 | 0.831452 | 1.656271e-55 | -8.615850e-47 |
Msa0249870 | Msa0368920 | 0.834552 | 2.806278e-56 | -8.615850e-47 |
Msa0260630 | Msa0368920 | 0.803039 | 4.215526e-49 | -8.615850e-47 |
Msa0281540 | Msa0368920 | 0.834017 | 3.821838e-56 | -8.615850e-47 |
Msa0320580 | Msa0368920 | 0.836329 | 9.972818e-57 | -8.615850e-47 |
Msa0344110 | Msa0368920 | 0.838962 | 2.105144e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0368920 | MtrunA17_Chr3g0112791 | 91.705 | 217 | 14 | 1 | 1 | 213 | 1 | 217 | 6.19e-143 | 397 |
Msa0368920 | MtrunA17_Chr5g0436201 | 58.019 | 212 | 60 | 7 | 26 | 213 | 5 | 211 | 9.57e-72 | 217 |
Msa0368920 | MtrunA17_Chr7g0240961 | 56.627 | 166 | 54 | 7 | 53 | 209 | 74 | 230 | 1.18e-50 | 164 |
Msa0368920 | MtrunA17_Chr3g0112811 | 69.466 | 131 | 30 | 5 | 10 | 138 | 1 | 123 | 7.68e-48 | 153 |
Msa0368920 | MtrunA17_Chr8g0379191 | 34.498 | 229 | 119 | 9 | 3 | 211 | 92 | 309 | 7.35e-29 | 109 |
Msa0368920 | MtrunA17_Chr4g0045171 | 32.889 | 225 | 128 | 7 | 3 | 211 | 81 | 298 | 2.55e-28 | 108 |
Msa0368920 | MtrunA17_Chr2g0284111 | 40.000 | 135 | 61 | 3 | 84 | 207 | 153 | 278 | 5.80e-28 | 107 |
Msa0368920 | MtrunA17_Chr3g0120281 | 42.188 | 64 | 28 | 1 | 87 | 150 | 240 | 294 | 4.76e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0368920 | AT5G05830.1 | 53.226 | 186 | 67 | 6 | 40 | 213 | 26 | 203 | 5.25e-51 | 164 |
Msa0368920 | AT5G01070.1 | 50.735 | 136 | 55 | 4 | 84 | 213 | 75 | 204 | 3.42e-37 | 129 |
Msa0368920 | AT2G37950.1 | 45.865 | 133 | 61 | 2 | 84 | 213 | 81 | 205 | 2.31e-35 | 124 |
Msa0368920 | AT5G59000.1 | 40.132 | 152 | 59 | 3 | 86 | 209 | 80 | 227 | 5.05e-27 | 103 |
Msa0368920 | AT2G34200.2 | 37.209 | 129 | 71 | 4 | 84 | 210 | 99 | 219 | 3.98e-19 | 82.4 |
Msa0368920 | AT2G34200.1 | 37.209 | 129 | 71 | 4 | 84 | 210 | 99 | 219 | 3.98e-19 | 82.4 |
Msa0368920 | AT5G60580.1 | 43.750 | 64 | 27 | 1 | 87 | 150 | 257 | 311 | 5.59e-11 | 61.6 |
Msa0368920 | AT5G60580.3 | 43.750 | 64 | 27 | 1 | 87 | 150 | 257 | 311 | 5.59e-11 | 61.6 |
Msa0368920 | AT5G60580.4 | 43.750 | 64 | 27 | 1 | 87 | 150 | 257 | 311 | 5.63e-11 | 61.6 |
Msa0368920 | AT5G60580.2 | 43.750 | 64 | 27 | 1 | 87 | 150 | 257 | 311 | 5.63e-11 | 61.6 |
Find 71 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTATTGTCTTCTCATT+TGG | 0.163355 | 3_1:-65888694 | Msa0368920:three_prime_UTR |
TCCTGAAGTTATAGGATTTC+AGG | 0.175642 | 3_1:+65888999 | None:intergenic |
CTTCTTTCAACAAACCTTAA+TGG | 0.186312 | 3_1:-65891620 | Msa0368920:five_prime_UTR |
CTGCTAGATCCTGAAGTTAT+AGG | 0.214776 | 3_1:+65888991 | None:intergenic |
CCAGCTTCCAAACATAATTT+AGG | 0.216231 | 3_1:-65888802 | Msa0368920:three_prime_UTR |
TTCTTATTGTCTTCTCATTT+GGG | 0.244244 | 3_1:-65888693 | Msa0368920:three_prime_UTR |
TTAACTCTTAGTTATTAATT+TGG | 0.263671 | 3_1:+65891728 | None:intergenic |
ATGTGCTGAAGCTTGGTTTA+AGG | 0.266567 | 3_1:-65891214 | Msa0368920:CDS |
GAGATCATGAATACCCATTA+AGG | 0.284798 | 3_1:+65891606 | None:intergenic |
TTCTTTCAACAAACCTTAAT+GGG | 0.300039 | 3_1:-65891619 | Msa0368920:five_prime_UTR |
AATCTTCATGTCATGGCTTT+GGG | 0.337486 | 3_1:+65891578 | None:intergenic |
GAATCTTCATGTCATGGCTT+TGG | 0.342745 | 3_1:+65891577 | None:intergenic |
GAATTTCCTCCTTGCCTGTA+TGG | 0.353899 | 3_1:-65889067 | Msa0368920:CDS |
CTTCTCATTTGGGTTATGAA+TGG | 0.367231 | 3_1:-65888683 | Msa0368920:three_prime_UTR |
GATACTTCCTAAATTATGTT+TGG | 0.383113 | 3_1:+65888795 | None:intergenic |
GATGATGACCAACATGAATC+TGG | 0.390187 | 3_1:-65891294 | Msa0368920:CDS |
TCATTGCCTTTGTCATCTCC+TGG | 0.395813 | 3_1:-65889044 | Msa0368920:CDS |
TCCATTGCTAGAAATGTATC+TGG | 0.396063 | 3_1:-65889204 | Msa0368920:CDS |
TCCTGAAATCCTATAACTTC+AGG | 0.402202 | 3_1:-65889000 | Msa0368920:exon |
ACACGAACATCCTAGTTCAA+TGG | 0.404206 | 3_1:+65891266 | None:intergenic |
TAGGATTTGTCATCTCAGTA+TGG | 0.410659 | 3_1:-65891331 | Msa0368920:CDS |
TTGTTGAAAGAAGAAGAAAA+AGG | 0.424162 | 3_1:+65891630 | None:intergenic |
CCTAAATTATGTTTGGAAGC+TGG | 0.430685 | 3_1:+65888802 | None:intergenic |
CACGAACATCCTAGTTCAAT+GGG | 0.431600 | 3_1:+65891267 | None:intergenic |
CATGGTACCTGTGTTTATAA+TGG | 0.435036 | 3_1:+65888933 | None:intergenic |
GTAAGATGATTGAGGATTTG+TGG | 0.435692 | 3_1:-65888968 | Msa0368920:three_prime_UTR |
AAGTTATAACTTATAATAAC+AGG | 0.436688 | 3_1:+65888736 | None:intergenic |
GGCGCTGAGTTTCTGCAGGT+GGG | 0.443589 | 3_1:+65889106 | None:intergenic |
CGCTGAGTTTCTGCAGGTGG+GGG | 0.452158 | 3_1:+65889108 | None:intergenic |
ATGTTGTGTGGATGTGGATC+TGG | 0.468588 | 3_1:-65891394 | Msa0368920:CDS |
ATAAACAATGTGCTGAAGCT+TGG | 0.473834 | 3_1:-65891221 | Msa0368920:CDS |
ATGTTCGTGTAAAGATGATT+TGG | 0.486734 | 3_1:-65891253 | Msa0368920:CDS |
ATGGTGTGAAGAGAGATTGT+AGG | 0.503740 | 3_1:-65891350 | Msa0368920:CDS |
GTCGGAATGTTGTGTGGATG+TGG | 0.513482 | 3_1:-65891400 | Msa0368920:CDS |
TGAAGCTTGGTTTAAGGTCA+AGG | 0.518133 | 3_1:-65891208 | Msa0368920:CDS |
AGGCGCTGAGTTTCTGCAGG+TGG | 0.521622 | 3_1:+65889105 | None:intergenic |
ACCATCGAAAATGTCCTTCA+CGG | 0.522737 | 3_1:-65891543 | Msa0368920:CDS |
CCATCGAAAATGTCCTTCAC+GGG | 0.523616 | 3_1:-65891542 | Msa0368920:CDS |
ACCAGATACATTTCTAGCAA+TGG | 0.523936 | 3_1:+65889203 | None:intergenic |
GCGCTGAGTTTCTGCAGGTG+GGG | 0.539720 | 3_1:+65889107 | None:intergenic |
TGTTCAAGTAAGTAACAAGA+AGG | 0.544984 | 3_1:-65888868 | Msa0368920:three_prime_UTR |
AGTTGAGAATCTTCATGTCA+TGG | 0.547212 | 3_1:+65891571 | None:intergenic |
CTATAACTTCAGGATCTAGC+AGG | 0.548028 | 3_1:-65888990 | Msa0368920:three_prime_UTR |
TCTGGGACTCCCATTGAACT+AGG | 0.554284 | 3_1:-65891276 | Msa0368920:CDS |
GACAAAGGCAATGACCATAC+AGG | 0.555573 | 3_1:+65889053 | None:intergenic |
AACTCTACAGCGGAGAATGT+GGG | 0.557154 | 3_1:-65891459 | Msa0368920:CDS |
GGATGTGGATCTGGAGAGTG+TGG | 0.567109 | 3_1:-65891385 | Msa0368920:CDS |
AAACTCAGCGCCTACTCCAC+CGG | 0.567388 | 3_1:-65889095 | Msa0368920:CDS |
AGTAGGCGCTGAGTTTCTGC+AGG | 0.570474 | 3_1:+65889102 | None:intergenic |
GAACTCTACAGCGGAGAATG+TGG | 0.583457 | 3_1:-65891460 | Msa0368920:CDS |
TCTAGCAGGTAAGATGATTG+AGG | 0.586586 | 3_1:-65888976 | Msa0368920:three_prime_UTR |
AGTGTCTTCTGTGTCTGTGT+CGG | 0.586898 | 3_1:-65891418 | Msa0368920:CDS |
ATTGAGACTGCATTGTGTTG+AGG | 0.593238 | 3_1:-65888636 | Msa0368920:three_prime_UTR |
ATGATGACCAACATGAATCT+GGG | 0.596167 | 3_1:-65891293 | Msa0368920:CDS |
TACAGAACTTGTGAAATCTG+TGG | 0.602282 | 3_1:-65889228 | Msa0368920:intron |
AATAAGAAGCAGTTGAGACA+AGG | 0.603597 | 3_1:+65888708 | None:intergenic |
AGTGTGGTTAATGTTGATGA+TGG | 0.605562 | 3_1:-65891369 | Msa0368920:CDS |
GAAGCTTGGTTTAAGGTCAA+GGG | 0.608837 | 3_1:-65891207 | Msa0368920:CDS |
GTTCAAGTAAGTAACAAGAA+GGG | 0.613575 | 3_1:-65888867 | Msa0368920:three_prime_UTR |
GTCTGTGTCGGAATGTTGTG+TGG | 0.613835 | 3_1:-65891406 | Msa0368920:CDS |
ATATTGAAAATGCATCTCCT+CGG | 0.622695 | 3_1:-65891482 | Msa0368920:CDS |
TGGGAGTCCCAGATTCATGT+TGG | 0.638328 | 3_1:+65891286 | None:intergenic |
TCTGTGACCATTATAAACAC+AGG | 0.659282 | 3_1:-65888940 | Msa0368920:three_prime_UTR |
AGGCAATGACCATACAGGCA+AGG | 0.660733 | 3_1:+65889058 | None:intergenic |
CATCGAAAATGTCCTTCACG+GGG | 0.665927 | 3_1:-65891541 | Msa0368920:CDS |
TTCTCCGCTGTAGAGTTCCG+AGG | 0.672525 | 3_1:+65891465 | None:intergenic |
CAATGACCATACAGGCAAGG+AGG | 0.693990 | 3_1:+65889061 | None:intergenic |
AAGTTGAAATGACAGAACAG+TGG | 0.697944 | 3_1:-65889173 | Msa0368920:CDS |
ATCTCCTCGGAACTCTACAG+CGG | 0.720267 | 3_1:-65891469 | Msa0368920:CDS |
AGAGACGCGTGAATTGAACA+TGG | 0.743408 | 3_1:+65888915 | None:intergenic |
ATCGAAAATGTCCTTCACGG+GGG | 0.766428 | 3_1:-65891540 | Msa0368920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTAAAAAAAAAATGACT+AGG | - | chr3_1:65889643-65889662 | Msa0368920:intron | 10.0% |
!! | TTAACTCTTAGTTATTAATT+TGG | + | chr3_1:65888627-65888646 | None:intergenic | 15.0% |
!!! | ATTAACATTGTTTCTTAATT+AGG | - | chr3_1:65889193-65889212 | Msa0368920:CDS | 15.0% |
!! | TCAAAAATCAAGTAAATTAT+TGG | - | chr3_1:65889756-65889775 | Msa0368920:intron | 15.0% |
!! | CAAAAATCAAGTAAATTATT+GGG | - | chr3_1:65889757-65889776 | Msa0368920:intron | 15.0% |
!!! | CACTTTTTGTTTTTAAATTA+CGG | - | chr3_1:65890273-65890292 | Msa0368920:intron | 15.0% |
!!! | TTTTAGAAAAACATGTTATA+TGG | + | chr3_1:65890300-65890319 | None:intergenic | 15.0% |
!!! | TTAATTCTTTTATTCCATTT+TGG | - | chr3_1:65890612-65890631 | Msa0368920:intron | 15.0% |
!!! | TAATTCTTTTATTCCATTTT+GGG | - | chr3_1:65890613-65890632 | Msa0368920:intron | 15.0% |
!! | TATTTATAGAAATATAAGGA+TGG | + | chr3_1:65891006-65891025 | None:intergenic | 15.0% |
!!! | GAAGTATTTATAGAAATATA+AGG | + | chr3_1:65891010-65891029 | None:intergenic | 15.0% |
!! | TTTCTATAAATACTTCTAAT+TGG | - | chr3_1:65891014-65891033 | Msa0368920:intron | 15.0% |
!!! | AGTTAACTGTTTTATTTTTT+TGG | - | chr3_1:65891073-65891092 | Msa0368920:intron | 15.0% |
!! | AAGTTATAACTTATAATAAC+AGG | + | chr3_1:65891619-65891638 | None:intergenic | 15.0% |
!!! | TGATTTTTGAATAATAGAAC+AGG | + | chr3_1:65889746-65889765 | None:intergenic | 20.0% |
!!! | AAATTAAGTTGTTTATCCAA+AGG | - | chr3_1:65890030-65890049 | Msa0368920:intron | 20.0% |
!!! | GTTAAACTACTATAATCTTT+TGG | - | chr3_1:65890667-65890686 | Msa0368920:intron | 20.0% |
!!! | CATTATCTTATTTAATAGAC+TGG | - | chr3_1:65890691-65890710 | Msa0368920:intron | 20.0% |
!!! | TGCAAAAATATTTTTGTTGT+TGG | - | chr3_1:65891515-65891534 | Msa0368920:CDS | 20.0% |
! | TTGTTGAAAGAAGAAGAAAA+AGG | + | chr3_1:65888725-65888744 | None:intergenic | 25.0% |
! | TTCTTTCAACAAACCTTAAT+GGG | - | chr3_1:65888733-65888752 | Msa0368920:three_prime_UTR | 25.0% |
! | TTTCTTAATTAGGTGTGTAA+TGG | - | chr3_1:65889203-65889222 | Msa0368920:CDS | 25.0% |
! | TTCTTAATTAGGTGTGTAAT+GGG | - | chr3_1:65889204-65889223 | Msa0368920:CDS | 25.0% |
!!! | CAAAGCATATCATTTTTATC+TGG | + | chr3_1:65889558-65889577 | None:intergenic | 25.0% |
!! | TTGTGTAGTAAATAGTTTGT+AGG | - | chr3_1:65889575-65889594 | Msa0368920:intron | 25.0% |
! | TATCATAATTGTGCTTGAAT+TGG | + | chr3_1:65889602-65889621 | None:intergenic | 25.0% |
!! | TTTTTGAATAATAGAACAGG+AGG | + | chr3_1:65889743-65889762 | None:intergenic | 25.0% |
!! | TAAACAAATGTTTCTACCTT+TGG | + | chr3_1:65890049-65890068 | None:intergenic | 25.0% |
!!! | TTTGCTTTTATGTGATGTTA+CGG | - | chr3_1:65890194-65890213 | Msa0368920:intron | 25.0% |
! | CTGCGATATAAAAACATTTA+GGG | + | chr3_1:65890468-65890487 | None:intergenic | 25.0% |
! | GAAAGTCTGAAAATTGATAA+TGG | - | chr3_1:65890575-65890594 | Msa0368920:intron | 25.0% |
! | CCAAATTTACATGAATCAAA+AGG | + | chr3_1:65890756-65890775 | None:intergenic | 25.0% |
!!! | CCTTTTGATTCATGTAAATT+TGG | - | chr3_1:65890753-65890772 | Msa0368920:intron | 25.0% |
! | TGTAAATTTGGAAAACATCT+TGG | - | chr3_1:65890765-65890784 | Msa0368920:intron | 25.0% |
!!! | TGTGGCTGAATTTTTTATAT+TGG | - | chr3_1:65890795-65890814 | Msa0368920:intron | 25.0% |
! | GATACTTCCTAAATTATGTT+TGG | + | chr3_1:65891560-65891579 | None:intergenic | 25.0% |
! | TTCTTATTGTCTTCTCATTT+GGG | - | chr3_1:65891659-65891678 | Msa0368920:five_prime_UTR | 25.0% |
CTTCTTTCAACAAACCTTAA+TGG | - | chr3_1:65888732-65888751 | Msa0368920:three_prime_UTR | 30.0% | |
! | TGCATTTTCAATATTGTCGA+CGG | + | chr3_1:65888864-65888883 | None:intergenic | 30.0% |
ATATTGAAAATGCATCTCCT+CGG | - | chr3_1:65888870-65888889 | Msa0368920:three_prime_UTR | 30.0% | |
ATGTTCGTGTAAAGATGATT+TGG | - | chr3_1:65889099-65889118 | Msa0368920:CDS | 30.0% | |
AATGGGTATAGACGAATATA+AGG | - | chr3_1:65889800-65889819 | Msa0368920:intron | 30.0% | |
! | TTGTTTTCAGCTTATCTCAA+GGG | - | chr3_1:65889920-65889939 | Msa0368920:intron | 30.0% |
!! | ACAACTTAATTTGCAGCTTA+TGG | + | chr3_1:65890022-65890041 | None:intergenic | 30.0% |
AACAATATGAGAGCTTACAA+AGG | + | chr3_1:65890150-65890169 | None:intergenic | 30.0% | |
CATATTGTTTCCCTATTAGA+AGG | - | chr3_1:65890161-65890180 | Msa0368920:intron | 30.0% | |
GATTCTACTTCCTTCTAATA+GGG | + | chr3_1:65890174-65890193 | None:intergenic | 30.0% | |
AGATTCTACTTCCTTCTAAT+AGG | + | chr3_1:65890175-65890194 | None:intergenic | 30.0% | |
! | GAAACAGTTTAGTCTTCTAA+GGG | - | chr3_1:65890216-65890235 | Msa0368920:intron | 30.0% |
! | AAAAACATTTAGGGTGTGTT+TGG | + | chr3_1:65890459-65890478 | None:intergenic | 30.0% |
CCTGCGATATAAAAACATTT+AGG | + | chr3_1:65890469-65890488 | None:intergenic | 30.0% | |
!! | CCTAAATGTTTTTATATCGC+AGG | - | chr3_1:65890466-65890485 | Msa0368920:intron | 30.0% |
AGTTGAATCAAATCACAACT+AGG | + | chr3_1:65890551-65890570 | None:intergenic | 30.0% | |
!!! | CTTTTATTCCATTTTGGGTT+TGG | - | chr3_1:65890618-65890637 | Msa0368920:intron | 30.0% |
! | CAAAAGGTTACTCTTTTCTA+TGG | + | chr3_1:65890740-65890759 | None:intergenic | 30.0% |
!!! | GCTGAATTTTTTATATTGGC+TGG | - | chr3_1:65890799-65890818 | Msa0368920:intron | 30.0% |
! | GCAATATTTTACCATCAAAC+AGG | + | chr3_1:65890844-65890863 | None:intergenic | 30.0% |
ATGCTTGAATTCACATACTA+TGG | + | chr3_1:65890895-65890914 | None:intergenic | 30.0% | |
!!! | ATTTGTCACTTTTCTACCTT+TGG | + | chr3_1:65890965-65890984 | None:intergenic | 30.0% |
! | AAAAGTGACAAATGTTGGTT+AGG | - | chr3_1:65890972-65890991 | Msa0368920:intron | 30.0% |
ATAGAAATATAAGGATGGCT+TGG | + | chr3_1:65891001-65891020 | None:intergenic | 30.0% | |
TGTTCAAGTAAGTAACAAGA+AGG | - | chr3_1:65891484-65891503 | Msa0368920:CDS | 30.0% | |
GTTCAAGTAAGTAACAAGAA+GGG | - | chr3_1:65891485-65891504 | Msa0368920:CDS | 30.0% | |
! | TCATATTTTTCACAACATGC+AGG | - | chr3_1:65891580-65891599 | Msa0368920:CDS | 30.0% |
CTTCTTATTGTCTTCTCATT+TGG | - | chr3_1:65891658-65891677 | Msa0368920:five_prime_UTR | 30.0% | |
GAGATCATGAATACCCATTA+AGG | + | chr3_1:65888749-65888768 | None:intergenic | 35.0% | |
AATCTTCATGTCATGGCTTT+GGG | + | chr3_1:65888777-65888796 | None:intergenic | 35.0% | |
AGTTGAGAATCTTCATGTCA+TGG | + | chr3_1:65888784-65888803 | None:intergenic | 35.0% | |
! | GCATTTTCAATATTGTCGAC+GGG | + | chr3_1:65888863-65888882 | None:intergenic | 35.0% |
! | AGTGTGGTTAATGTTGATGA+TGG | - | chr3_1:65888983-65889002 | Msa0368920:three_prime_UTR | 35.0% |
TAGGATTTGTCATCTCAGTA+TGG | - | chr3_1:65889021-65889040 | Msa0368920:CDS | 35.0% | |
ATGATGACCAACATGAATCT+GGG | - | chr3_1:65889059-65889078 | Msa0368920:CDS | 35.0% | |
ATAAACAATGTGCTGAAGCT+TGG | - | chr3_1:65889131-65889150 | Msa0368920:CDS | 35.0% | |
!! | TGTAGCATTGACACTTATGA+TGG | - | chr3_1:65889287-65889306 | Msa0368920:intron | 35.0% |
ACTCACTATTAGTGCTTCAT+AGG | - | chr3_1:65889404-65889423 | Msa0368920:intron | 35.0% | |
ACATGAGTGACTCAAATAGT+AGG | + | chr3_1:65889439-65889458 | None:intergenic | 35.0% | |
TGACATGTGCTGAATATTCT+CGG | - | chr3_1:65889458-65889477 | Msa0368920:intron | 35.0% | |
AATATTCTCGGAGGTTTAGA+TGG | - | chr3_1:65889470-65889489 | Msa0368920:intron | 35.0% | |
ACTAGATTGAGACATGCTAT+TGG | - | chr3_1:65889519-65889538 | Msa0368920:intron | 35.0% | |
! | TACCCATTTTACCCTTTTCT+GGG | + | chr3_1:65889788-65889807 | None:intergenic | 35.0% |
! | ATACCCATTTTACCCTTTTC+TGG | + | chr3_1:65889789-65889808 | None:intergenic | 35.0% |
ATGATTGTCTGAGAGAACTT+AGG | - | chr3_1:65889871-65889890 | Msa0368920:intron | 35.0% | |
!! | GTTGTTTTCAGCTTATCTCA+AGG | - | chr3_1:65889919-65889938 | Msa0368920:intron | 35.0% |
TTTGTTTAGATAACCAGAGC+CGG | - | chr3_1:65890061-65890080 | Msa0368920:intron | 35.0% | |
TATCAAACATGATGTGCACT+GGG | + | chr3_1:65890111-65890130 | None:intergenic | 35.0% | |
ATATCAAACATGATGTGCAC+TGG | + | chr3_1:65890112-65890131 | None:intergenic | 35.0% | |
! | GGAAACAGTTTAGTCTTCTA+AGG | - | chr3_1:65890215-65890234 | Msa0368920:intron | 35.0% |
! | TGTGTTTGGATTGATGGTAT+AGG | - | chr3_1:65890239-65890258 | Msa0368920:intron | 35.0% |
! | TTTGGATTGATGGTATAGGA+GGG | - | chr3_1:65890243-65890262 | Msa0368920:intron | 35.0% |
TTTATATCGCAGGTACTTAG+AGG | - | chr3_1:65890476-65890495 | Msa0368920:intron | 35.0% | |
! | TCCAACTTTTATGTGACAGT+TGG | + | chr3_1:65890717-65890736 | None:intergenic | 35.0% |
AAACATCTTGGAAACTCTTG+TGG | - | chr3_1:65890777-65890796 | Msa0368920:intron | 35.0% | |
ATTGGCTGGATTAATTCTCA+TGG | - | chr3_1:65890813-65890832 | Msa0368920:intron | 35.0% | |
AAGTAGTTGTTCAAGTCCAA+AGG | - | chr3_1:65890946-65890965 | Msa0368920:intron | 35.0% | |
GGTAGAAAAGTGACAAATGT+TGG | - | chr3_1:65890967-65890986 | Msa0368920:intron | 35.0% | |
TACAGAACTTGTGAAATCTG+TGG | - | chr3_1:65891124-65891143 | Msa0368920:intron | 35.0% | |
TCCATTGCTAGAAATGTATC+TGG | - | chr3_1:65891148-65891167 | Msa0368920:intron | 35.0% | |
!! | ACCAGATACATTTCTAGCAA+TGG | + | chr3_1:65891152-65891171 | None:intergenic | 35.0% |
AAGTTGAAATGACAGAACAG+TGG | - | chr3_1:65891179-65891198 | Msa0368920:intron | 35.0% | |
CAAGGAGGAAATTCAAAAAC+CGG | + | chr3_1:65891279-65891298 | None:intergenic | 35.0% | |
TCCTGAAATCCTATAACTTC+AGG | - | chr3_1:65891352-65891371 | Msa0368920:CDS | 35.0% | |
TCCTGAAGTTATAGGATTTC+AGG | + | chr3_1:65891356-65891375 | None:intergenic | 35.0% | |
GTAAGATGATTGAGGATTTG+TGG | - | chr3_1:65891384-65891403 | Msa0368920:CDS | 35.0% | |
TCTGTGACCATTATAAACAC+AGG | - | chr3_1:65891412-65891431 | Msa0368920:CDS | 35.0% | |
CATGGTACCTGTGTTTATAA+TGG | + | chr3_1:65891422-65891441 | None:intergenic | 35.0% | |
CCTAAATTATGTTTGGAAGC+TGG | + | chr3_1:65891553-65891572 | None:intergenic | 35.0% | |
CCAGCTTCCAAACATAATTT+AGG | - | chr3_1:65891550-65891569 | Msa0368920:CDS | 35.0% | |
AATAAGAAGCAGTTGAGACA+AGG | + | chr3_1:65891647-65891666 | None:intergenic | 35.0% | |
! | CTTCTCATTTGGGTTATGAA+TGG | - | chr3_1:65891669-65891688 | Msa0368920:five_prime_UTR | 35.0% |
GAATCTTCATGTCATGGCTT+TGG | + | chr3_1:65888778-65888797 | None:intergenic | 40.0% | |
ACCATCGAAAATGTCCTTCA+CGG | - | chr3_1:65888809-65888828 | Msa0368920:three_prime_UTR | 40.0% | |
ATGGTGTGAAGAGAGATTGT+AGG | - | chr3_1:65889002-65889021 | Msa0368920:exon | 40.0% | |
GATGATGACCAACATGAATC+TGG | - | chr3_1:65889058-65889077 | Msa0368920:CDS | 40.0% | |
CACGAACATCCTAGTTCAAT+GGG | + | chr3_1:65889088-65889107 | None:intergenic | 40.0% | |
ACACGAACATCCTAGTTCAA+TGG | + | chr3_1:65889089-65889108 | None:intergenic | 40.0% | |
ATGTGCTGAAGCTTGGTTTA+AGG | - | chr3_1:65889138-65889157 | Msa0368920:CDS | 40.0% | |
! | TGAAGCTTGGTTTAAGGTCA+AGG | - | chr3_1:65889144-65889163 | Msa0368920:CDS | 40.0% |
! | GAAGCTTGGTTTAAGGTCAA+GGG | - | chr3_1:65889145-65889164 | Msa0368920:CDS | 40.0% |
AAGTGAAACTTGCAAGATGC+AGG | + | chr3_1:65889713-65889732 | None:intergenic | 40.0% | |
TGTCCCAGAAAAGGGTAAAA+TGG | - | chr3_1:65889782-65889801 | Msa0368920:intron | 40.0% | |
GTCCCAGAAAAGGGTAAAAT+GGG | - | chr3_1:65889783-65889802 | Msa0368920:intron | 40.0% | |
TTGTTTAGATAACCAGAGCC+GGG | - | chr3_1:65890062-65890081 | Msa0368920:intron | 40.0% | |
! | CTTTACTGAATTTTCGTCCC+CGG | + | chr3_1:65890083-65890102 | None:intergenic | 40.0% |
! | TAGTCTTCTAAGGGTGTGTT+TGG | - | chr3_1:65890225-65890244 | Msa0368920:intron | 40.0% |
! | TAAGGGTGTGTTTGGATTGA+TGG | - | chr3_1:65890233-65890252 | Msa0368920:intron | 40.0% |
! | GTTTGGATTGATGGTATAGG+AGG | - | chr3_1:65890242-65890261 | Msa0368920:intron | 40.0% |
! | TTGGATTGATGGTATAGGAG+GGG | - | chr3_1:65890244-65890263 | Msa0368920:intron | 40.0% |
! | ACATTTAGGGTGTGTTTGGA+TGG | + | chr3_1:65890455-65890474 | None:intergenic | 40.0% |
ATGGACTTCATCTGGAGAAT+GGG | - | chr3_1:65890499-65890518 | Msa0368920:intron | 40.0% | |
GCCAACTGTCACATAAAAGT+TGG | - | chr3_1:65890713-65890732 | Msa0368920:intron | 40.0% | |
! | TCATGGCTTTACCTGTTTGA+TGG | - | chr3_1:65890830-65890849 | Msa0368920:intron | 40.0% |
GTGAATTCAAGCATGTACTG+CGG | - | chr3_1:65890901-65890920 | Msa0368920:intron | 40.0% | |
AATTCAAAAACCGGTGGAGT+AGG | + | chr3_1:65891270-65891289 | None:intergenic | 40.0% | |
AAAAAGCCAGGAGATGACAA+AGG | + | chr3_1:65891317-65891336 | None:intergenic | 40.0% | |
CAAATAGAAGCGAAAAAGCC+AGG | + | chr3_1:65891329-65891348 | None:intergenic | 40.0% | |
CTGCTAGATCCTGAAGTTAT+AGG | + | chr3_1:65891364-65891383 | None:intergenic | 40.0% | |
CTATAACTTCAGGATCTAGC+AGG | - | chr3_1:65891362-65891381 | Msa0368920:CDS | 40.0% | |
TCTAGCAGGTAAGATGATTG+AGG | - | chr3_1:65891376-65891395 | Msa0368920:CDS | 40.0% | |
ATTGAGACTGCATTGTGTTG+AGG | - | chr3_1:65891716-65891735 | Msa0368920:five_prime_UTR | 40.0% | |
CCATCGAAAATGTCCTTCAC+GGG | - | chr3_1:65888810-65888829 | Msa0368920:three_prime_UTR | 45.0% | |
CATCGAAAATGTCCTTCACG+GGG | - | chr3_1:65888811-65888830 | Msa0368920:three_prime_UTR | 45.0% | |
ATCGAAAATGTCCTTCACGG+GGG | - | chr3_1:65888812-65888831 | Msa0368920:three_prime_UTR | 45.0% | |
AACTCTACAGCGGAGAATGT+GGG | - | chr3_1:65888893-65888912 | Msa0368920:three_prime_UTR | 45.0% | |
AGTGTCTTCTGTGTCTGTGT+CGG | - | chr3_1:65888934-65888953 | Msa0368920:three_prime_UTR | 45.0% | |
ATGTTGTGTGGATGTGGATC+TGG | - | chr3_1:65888958-65888977 | Msa0368920:three_prime_UTR | 45.0% | |
CATGTGTCAGTGTGTTGTGT+CGG | + | chr3_1:65889322-65889341 | None:intergenic | 45.0% | |
CATGTGCTGAATATTCTCGG+AGG | - | chr3_1:65889461-65889480 | Msa0368920:intron | 45.0% | |
AGGTGCATCAGCATTTGCAT+AGG | - | chr3_1:65889663-65889682 | Msa0368920:intron | 45.0% | |
TATTGGGTGTGTCCCAGAAA+AGG | - | chr3_1:65889773-65889792 | Msa0368920:intron | 45.0% | |
ATTGGGTGTGTCCCAGAAAA+GGG | - | chr3_1:65889774-65889793 | Msa0368920:intron | 45.0% | |
TGTTTAGATAACCAGAGCCG+GGG | - | chr3_1:65890063-65890082 | Msa0368920:intron | 45.0% | |
CGGGGACGAAAATTCAGTAA+AGG | - | chr3_1:65890081-65890100 | Msa0368920:intron | 45.0% | |
! | ATTGATGGTATAGGAGGGGA+AGG | - | chr3_1:65890248-65890267 | Msa0368920:intron | 45.0% |
TTTGGATGGAGGGTTTAGGA+GGG | + | chr3_1:65890441-65890460 | None:intergenic | 45.0% | |
TGTGTTTGGATGGAGGGTTT+AGG | + | chr3_1:65890445-65890464 | None:intergenic | 45.0% | |
TTAGGGTGTGTTTGGATGGA+GGG | + | chr3_1:65890451-65890470 | None:intergenic | 45.0% | |
! | TTTAGGGTGTGTTTGGATGG+AGG | + | chr3_1:65890452-65890471 | None:intergenic | 45.0% |
TATCGCAGGTACTTAGAGGA+TGG | - | chr3_1:65890480-65890499 | Msa0368920:intron | 45.0% | |
! | CTTAGAGGATGGACTTCATC+TGG | - | chr3_1:65890491-65890510 | Msa0368920:intron | 45.0% |
! | GATGGACTTCATCTGGAGAA+TGG | - | chr3_1:65890498-65890517 | Msa0368920:intron | 45.0% |
GGTCAACTCCAAACCCAAAA+TGG | + | chr3_1:65890629-65890648 | None:intergenic | 45.0% | |
AACAGAGCAGAGTGCACAAT+TGG | + | chr3_1:65890650-65890669 | None:intergenic | 45.0% | |
GGAGGAAATTCAAAAACCGG+TGG | + | chr3_1:65891276-65891295 | None:intergenic | 45.0% | |
GAATTTCCTCCTTGCCTGTA+TGG | - | chr3_1:65891285-65891304 | Msa0368920:CDS | 45.0% | |
GACAAAGGCAATGACCATAC+AGG | + | chr3_1:65891302-65891321 | None:intergenic | 45.0% | |
TCATTGCCTTTGTCATCTCC+TGG | - | chr3_1:65891308-65891327 | Msa0368920:CDS | 45.0% | |
AGAGACGCGTGAATTGAACA+TGG | + | chr3_1:65891440-65891459 | None:intergenic | 45.0% | |
!!! | TTTTTAATTATTTAGAAAAA+GGG | + | chr3_1:65889633-65889652 | None:intergenic | 5.0% |
!!! | TTTTTTAATTATTTAGAAAA+AGG | + | chr3_1:65889634-65889653 | None:intergenic | 5.0% |
! | CCCGTGAAGGACATTTTCGA+TGG | + | chr3_1:65888813-65888832 | None:intergenic | 50.0% |
ATCTCCTCGGAACTCTACAG+CGG | - | chr3_1:65888883-65888902 | Msa0368920:three_prime_UTR | 50.0% | |
GAACTCTACAGCGGAGAATG+TGG | - | chr3_1:65888892-65888911 | Msa0368920:three_prime_UTR | 50.0% | |
GTCTGTGTCGGAATGTTGTG+TGG | - | chr3_1:65888946-65888965 | Msa0368920:three_prime_UTR | 50.0% | |
GTCGGAATGTTGTGTGGATG+TGG | - | chr3_1:65888952-65888971 | Msa0368920:three_prime_UTR | 50.0% | |
TGGGAGTCCCAGATTCATGT+TGG | + | chr3_1:65889069-65889088 | None:intergenic | 50.0% | |
! | TCTGGGACTCCCATTGAACT+AGG | - | chr3_1:65889076-65889095 | Msa0368920:CDS | 50.0% |
TTGGATGGAGGGTTTAGGAG+GGG | + | chr3_1:65890440-65890459 | None:intergenic | 50.0% | |
GTTTGGATGGAGGGTTTAGG+AGG | + | chr3_1:65890442-65890461 | None:intergenic | 50.0% | |
CAATGACCATACAGGCAAGG+AGG | + | chr3_1:65891294-65891313 | None:intergenic | 50.0% | |
AGGCAATGACCATACAGGCA+AGG | + | chr3_1:65891297-65891316 | None:intergenic | 50.0% | |
ACTTGTCTTGTCCCCCGTGA+AGG | + | chr3_1:65888826-65888845 | None:intergenic | 55.0% | |
TTCTCCGCTGTAGAGTTCCG+AGG | + | chr3_1:65888890-65888909 | None:intergenic | 55.0% | |
GGATGTGGATCTGGAGAGTG+TGG | - | chr3_1:65888967-65888986 | Msa0368920:three_prime_UTR | 55.0% | |
! | TGAATTTTCGTCCCCGGCTC+TGG | + | chr3_1:65890077-65890096 | None:intergenic | 55.0% |
TGGATGGAGGGTTTAGGAGG+GGG | + | chr3_1:65890439-65890458 | None:intergenic | 55.0% | |
!! | AGTAGGCGCTGAGTTTCTGC+AGG | + | chr3_1:65891253-65891272 | None:intergenic | 55.0% |
AAACTCAGCGCCTACTCCAC+CGG | - | chr3_1:65891257-65891276 | Msa0368920:CDS | 55.0% | |
TGGAGGGTTTAGGAGGGGGA+GGG | + | chr3_1:65890435-65890454 | None:intergenic | 60.0% | |
ATGGAGGGTTTAGGAGGGGG+AGG | + | chr3_1:65890436-65890455 | None:intergenic | 60.0% | |
TGAGTTTCTGCAGGTGGGGG+AGG | + | chr3_1:65891244-65891263 | None:intergenic | 60.0% | |
CGCTGAGTTTCTGCAGGTGG+GGG | + | chr3_1:65891247-65891266 | None:intergenic | 60.0% | |
GCGCTGAGTTTCTGCAGGTG+GGG | + | chr3_1:65891248-65891267 | None:intergenic | 60.0% | |
! | GGCGCTGAGTTTCTGCAGGT+GGG | + | chr3_1:65891249-65891268 | None:intergenic | 60.0% |
!! | AGGCGCTGAGTTTCTGCAGG+TGG | + | chr3_1:65891250-65891269 | None:intergenic | 60.0% |
GGTTTAGGAGGGGGAGGGAG+GGG | + | chr3_1:65890430-65890449 | None:intergenic | 65.0% | |
GGGTTTAGGAGGGGGAGGGA+GGG | + | chr3_1:65890431-65890450 | None:intergenic | 65.0% | |
AGGGTTTAGGAGGGGGAGGG+AGG | + | chr3_1:65890432-65890451 | None:intergenic | 65.0% | |
GGTGGGGGAGGTCTAGTTGG+TGG | + | chr3_1:65891232-65891251 | None:intergenic | 65.0% | |
GCAGGTGGGGGAGGTCTAGT+TGG | + | chr3_1:65891235-65891254 | None:intergenic | 65.0% | |
TAGGAGGGGGAGGGAGGGGA+GGG | + | chr3_1:65890426-65890445 | None:intergenic | 70.0% | |
TTAGGAGGGGGAGGGAGGGG+AGG | + | chr3_1:65890427-65890446 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 65888611 | 65891763 | 65888611 | ID=Msa0368920;Name=Msa0368920 |
chr3_1 | mRNA | 65888611 | 65891763 | 65888611 | ID=Msa0368920-mRNA-1;Parent=Msa0368920;Name=Msa0368920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|2|406|213 |
chr3_1 | exon | 65888611 | 65889245 | 65888611 | ID=Msa0368920-mRNA-1:exon:13289;Parent=Msa0368920-mRNA-1 |
chr3_1 | exon | 65891201 | 65891763 | 65891201 | ID=Msa0368920-mRNA-1:exon:13288;Parent=Msa0368920-mRNA-1 |
chr3_1 | five_prime_UTR | 65891614 | 65891763 | 65891614 | ID=Msa0368920-mRNA-1:five_prime_utr;Parent=Msa0368920-mRNA-1 |
chr3_1 | CDS | 65891201 | 65891613 | 65891201 | ID=Msa0368920-mRNA-1:cds;Parent=Msa0368920-mRNA-1 |
chr3_1 | CDS | 65889017 | 65889245 | 65889017 | ID=Msa0368920-mRNA-1:cds;Parent=Msa0368920-mRNA-1 |
chr3_1 | three_prime_UTR | 65888611 | 65889016 | 65888611 | ID=Msa0368920-mRNA-1:three_prime_utr;Parent=Msa0368920-mRNA-1 |
Gene Sequence |
Protein sequence |