AlfalfaGEDB | Msa0346910

M. sativa cultivar zhongmu-4 / Msa0346910

KEGG: K14328
GO: GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701
PFAM: PF03467.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346910	XP_003598033.2	95.564	541	15	2	34	566	1	540	0.0	1041

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346910	sp\|Q9FVW4\|RENT3_ARATH	48.876	534	206	14	42	566	7	482	3.29e-137	410

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346910	G7IYF2	95.564	541	15	2	34	566	1	540	0.0	1041

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0346910	0.847131	1.404065e-59	-8.615850e-47
Msa0003220	Msa0346910	0.808561	2.914992e-50	-8.615850e-47
Msa0005270	Msa0346910	0.808654	2.785281e-50	-8.615850e-47
Msa0005620	Msa0346910	0.803343	3.646985e-49	-8.615850e-47
Msa0010770	Msa0346910	0.847219	1.328045e-59	-8.615850e-47
Msa0017320	Msa0346910	0.814283	1.667396e-51	-8.615850e-47
Msa0017390	Msa0346910	0.812292	4.562955e-51	-8.615850e-47
Msa0020410	Msa0346910	0.828258	9.935767e-55	-8.615850e-47
Msa0023330	Msa0346910	0.859207	4.853409e-63	-8.615850e-47
Msa0026430	Msa0346910	0.803480	3.416799e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346910	MtrunA17_Chr3g0077481	95.564	541	15	2	34	566	1	540	0.0	1041
Msa0346910	MtrunA17_Chr2g0276971	41.606	548	257	18	42	566	4	511	7.73e-98	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0346910	AT1G33980.1	48.876	534	206	14	42	566	7	482	3.35e-138	410
Msa0346910	AT1G33980.2	48.507	536	207	15	42	566	7	484	1.81e-135	403

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Find 179 sgRNAs with CRISPR-Local

Find 1065 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTTATTCGGGAAAC+AGG	0.394937	3_1:+7794636	Msa0346910:CDS
AAACTTTCAAAGAAAGGTGT+TGG	0.453145	3_1:+7794911	Msa0346910:CDS
AAATGATAAGGAATGGCATG+CGG	0.638715	3_1:+7796621	Msa0346910:three_prime_UTR
AACAAGGACAGGCCTGATCG+TGG	0.639778	3_1:+7794365	Msa0346910:CDS
AACCAAAGGCGTGAAGCCGG+TGG	0.625599	3_1:+7794068	Msa0346910:CDS
AACCCACGGAACCCACATTT+AGG	0.254362	3_1:-7796393	None:intergenic
AACCCAGACCTTGAACCAAA+AGG	0.525585	3_1:-7794206	None:intergenic
AACTTTCAAAGAAAGGTGTT+GGG	0.465614	3_1:+7794912	Msa0346910:CDS
AAGAATGGTCCTCACGCCTG+GGG	0.661060	3_1:-7791443	None:intergenic
AAGCCGGTGGAAGATTGATC+AGG	0.514442	3_1:+7794081	Msa0346910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAGCTGAAAACAGCTTA+TGG	-	chr3_1:7781089-7781108	None:intergenic	30.0%
ATTGGATTCATGTAAGCTTA+CGG	-	chr3_1:7781113-7781132	None:intergenic	30.0%
AACTCAGGTCTAAACAATTA+AGG	-	chr3_1:7781264-7781283	None:intergenic	30.0%
ATCAGGCATTAATATTTGCA+TGG	-	chr3_1:7781467-7781486	None:intergenic	30.0%
TTAATGCCTGATATTCAATC+AGG	+	chr3_1:7781475-7781494	Msa0346910:intron	30.0%
CTTTATATATAGTCCCTTCA+CGG	-	chr3_1:7781573-7781592	None:intergenic	30.0%
CATTCTAATGCTAATTGTCT+AGG	+	chr3_1:7781636-7781655	Msa0346910:intron	30.0%
ATGCTAATTGTCTAGGTTAA+CGG	+	chr3_1:7781643-7781662	Msa0346910:intron	30.0%
AAGTGTAAATCAAATACAGG+TGG	-	chr3_1:7781829-7781848	None:intergenic	30.0%
AAAAAACACTTATAGCTACG+AGG	-	chr3_1:7782123-7782142	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	7779868	7796654	7779868	ID=Msa0346910;Name=Msa0346910
chr3_1	mRNA	7779868	7796654	7779868	ID=Msa0346910-mRNA-1;Parent=Msa0346910;Name=Msa0346910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.92\|0.92\|1\|0.84\|0.78\|14\|707\|566
chr3_1	exon	7779868	7780112	7779868	ID=Msa0346910-mRNA-1:exon:2199;Parent=Msa0346910-mRNA-1
chr3_1	exon	7780781	7780887	7780781	ID=Msa0346910-mRNA-1:exon:2200;Parent=Msa0346910-mRNA-1
chr3_1	exon	7781497	7781592	7781497	ID=Msa0346910-mRNA-1:exon:2201;Parent=Msa0346910-mRNA-1
chr3_1	exon	7781711	7781809	7781711	ID=Msa0346910-mRNA-1:exon:2202;Parent=Msa0346910-mRNA-1
chr3_1	exon	7781958	7782037	7781958	ID=Msa0346910-mRNA-1:exon:2203;Parent=Msa0346910-mRNA-1
chr3_1	exon	7789519	7789617	7789519	ID=Msa0346910-mRNA-1:exon:2204;Parent=Msa0346910-mRNA-1
chr3_1	exon	7791396	7791504	7791396	ID=Msa0346910-mRNA-1:exon:2205;Parent=Msa0346910-mRNA-1
chr3_1	exon	7793539	7793663	7793539	ID=Msa0346910-mRNA-1:exon:2206;Parent=Msa0346910-mRNA-1
chr3_1	exon	7793996	7794491	7793996	ID=Msa0346910-mRNA-1:exon:2207;Parent=Msa0346910-mRNA-1
chr3_1	exon	7794624	7794713	7794624	ID=Msa0346910-mRNA-1:exon:2208;Parent=Msa0346910-mRNA-1
chr3_1	exon	7794834	7794949	7794834	ID=Msa0346910-mRNA-1:exon:2209;Parent=Msa0346910-mRNA-1
chr3_1	exon	7795027	7795075	7795027	ID=Msa0346910-mRNA-1:exon:2210;Parent=Msa0346910-mRNA-1
chr3_1	exon	7795849	7795982	7795849	ID=Msa0346910-mRNA-1:exon:2211;Parent=Msa0346910-mRNA-1
chr3_1	exon	7796092	7796654	7796092	ID=Msa0346910-mRNA-1:exon:2212;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7779868	7780112	7779868	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7780781	7780887	7780781	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7781497	7781592	7781497	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7781711	7781809	7781711	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7781958	7782037	7781958	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7789519	7789617	7789519	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7791396	7791504	7791396	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7793539	7793663	7793539	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7793996	7794491	7793996	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7794624	7794713	7794624	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7794834	7794949	7794834	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	CDS	7795027	7795065	7795027	ID=Msa0346910-mRNA-1:cds;Parent=Msa0346910-mRNA-1
chr3_1	three_prime_UTR	7795066	7795075	7795066	ID=Msa0346910-mRNA-1:three_prime_utr;Parent=Msa0346910-mRNA-1
chr3_1	three_prime_UTR	7795849	7795982	7795849	ID=Msa0346910-mRNA-1:three_prime_utr;Parent=Msa0346910-mRNA-1
chr3_1	three_prime_UTR	7796092	7796654	7796092	ID=Msa0346910-mRNA-1:three_prime_utr;Parent=Msa0346910-mRNA-1

Gene Sequence

>Msa0346910

CCCAGTTTGTATTGTGTTGTGCTGAAAAAGAAGAACGAAAGAGGAATATCAGAGAGAACAATTTCGAAGTTGGTTTCATTTCGGAAGAAGAAGAAGAAGATGAAGGCGCGTTCGGAAAAGGGAAGAACGAAAGTAGTGATACGGCATTTACCACCATCTCTAACCGAATCCGATCTCATTCAACACATCGATAACCGTTTCTCTTCTCGCTATCACTGGTTCGTTTTCCGTTCCGGCAACACCAGTTATAGGAATCAAAAGTATGCGAGAGCGTATCTAGACTTCAATTCACCTGATGATGTTTTCGAGTTTGCGGAGTTCTTTAATGGACACGTTTTCGTTAACGAGAAAGGTGTCCAGCATAAAGCAGTAGTTGAGTATGCACCTTCTCAGCGTGTTCCAAAGCCGAGTACCAAAAAGGATGGCCGTGAAGGGACTATATATAAAGATCCAGACTATCTCGAGTTCCTCAAACTCATTTCAAAGCCTCAAGAACATCTTCCGAGTGCAGAAATACAATTGGAAAGAAAGGAAGCTGAGCAAGCTGGGGCTAGCAAGGAAGCACCTATTGTCACACCCCTGATGGCATATATACGTCAGAAGCGTGCTGTTGACAGTGGTCCACTGGTTTCATCGGCCGCAACAAGAGTTGGCAGAAGAGCCAGAGCTGCTATGCAAGGCAAGCCTGGCCCCGGTAATACCAGACGGGGATCTGAAAAGAAAAAGAATGCTAATCGGAAAGATTTGAAAGACAAATCTGCCTTTACTGTGGTCCCCAGGCGTGAGGACCATTCTTCTGAATCAAGTATAAAAGGAGTTTATGAAATTGATTCTTCGCATGTGATTGATGAATATACAGTGCATGGCATTGAAGGTTCCGTCTCTGGAATACCACTGACTTCTGACTCAGGAAAGAAAAAGATCCTCCTCCTGAAAGGAAAACAGCGGGAAATTCCCAAAGCCACTGAAGGTATGGTTAAACAGCAAAATGCACAATCTGCAAATTCGCCCATTCCAACTACTTCAAAACAGAACCAAAGGCGTGAAGCCGGTGGAAGATTGATCAGGAGCATACTTCTAAATAATGAATCTCGTCCGAGTCAGTCTACATCTACTGCGCAACATAAGATTCAAATCTTAACTTCTGAGAATGGAAGGCGTCCACCTCGTCCTTTTGGTTCAAGGTCTGGGTTAAGTGATCATGTCTCTAGTCATGATGCTGGGCATGCTAATTCTGAAGGGGAATCTAAAAGGGATTTGGATGAAAAGTTTGTAAGAAGAGATTTTCATGGTTCGGGTATTGGTGATAAAACAGAAAGACGTACTAGAAACAAGGACAGGCCTGATCGTGGTGTTTGGGCACCTCTTCGCCGTTCCGATTCTTCACATTCTAGTAATGAGCTCTCATCATCCTCACTGGCACAGTCTGCACCATCATATCCTGAATCAGTTGACGGAGAGGTAAAAGAAAATGCTTATTCGGGAAACAGGAGTGGTGAATTCTCAACTTCTGCAGGTGGACGTAGTAGTCCCTCTGTTGAGAATGGTTCACAAAGAATTTTTACTCGTCGTGGGGCTCCCTATATAGTGAAGGATGATGGTGCAGTCAGTTCGAGTGAAGGGAAACTTTCAAAGAAAGGTGTTGGGAATAGTACTCATGAGAAACAAGTTTGGGTTCAGAAATCATCTTCAGGCTCTTAA

Protein sequence

>Msa0346910

PSLYCVVLKKKNERGISERTISKLVSFRKKKKKMKARSEKGRTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTSYRNQKYARAYLDFNSPDDVFEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKPSTKKDGREGTIYKDPDYLEFLKLISKPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSAATRVGRRARAAMQGKPGPGNTRRGSEKKKNANRKDLKDKSAFTVVPRREDHSSESSIKGVYEIDSSHVIDEYTVHGIEGSVSGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQQNAQSANSPIPTTSKQNQRREAGGRLIRSILLNNESRPSQSTSTAQHKIQILTSENGRRPPRPFGSRSGLSDHVSSHDAGHANSEGESKRDLDEKFVRRDFHGSGIGDKTERRTRNKDRPDRGVWAPLRRSDSSHSSNELSSSSLAQSAPSYPESVDGEVKENAYSGNRSGEFSTSAGGRSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKKGVGNSTHEKQVWVQKSSSGS*