AlfalfaGEDB | Msa0724480

M. sativa cultivar zhongmu-4 / Msa0724480

KEGG: K09510
GO: GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0008047 GO:0008150 GO:0016020 GO:0030234 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071944 GO:0098772
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724480	XP_003613543.1	92.857	280	20	0	1	280	1	280	0.0	537

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724480	sp\|P59910\|DJB13_HUMAN	34.783	322	151	7	3	274	2	314	1.75e-51	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724480	G7K8E9	92.857	280	20	0	1	280	1	280	0.0	537

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027890	Msa0724480	0.810285	1.243662e-50	-8.615850e-47
Msa0030300	Msa0724480	0.804482	2.114845e-49	-8.615850e-47
Msa0032470	Msa0724480	0.816350	5.787452e-52	-8.615850e-47
Msa0036140	Msa0724480	0.804820	1.797891e-49	-8.615850e-47
Msa0042550	Msa0724480	0.820609	6.266210e-53	-8.615850e-47
Msa0043980	Msa0724480	0.812362	4.404916e-51	-8.615850e-47
Msa0055070	Msa0724480	0.800341	1.508574e-48	-8.615850e-47
Msa0065680	Msa0724480	-0.806938	6.450024e-50	-8.615850e-47
Msa0070170	Msa0724480	0.819244	1.285963e-52	-8.615850e-47
Msa0083280	Msa0724480	0.817474	3.236115e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724480	MtrunA17_Chr5g0415751	93.960	149	9	0	132	280	18	166	5.85e-99	287
Msa0724480	MtrunA17_Chr5g0415731	90.977	133	12	0	1	133	1	133	4.03e-86	253
Msa0724480	MtrunA17_Chr3g0093111	39.873	316	139	4	5	275	2	311	4.42e-71	221
Msa0724480	MtrunA17_Chr4g0006391	56.571	175	76	0	101	275	165	339	1.54e-68	216
Msa0724480	MtrunA17_Chr4g0006391	53.333	75	28	1	5	79	4	71	1.15e-18	84.3
Msa0724480	MtrunA17_Chr2g0324921	56.322	174	76	0	101	274	161	334	7.19e-68	214
Msa0724480	MtrunA17_Chr2g0324921	54.667	75	27	1	5	79	4	71	6.79e-18	82.4
Msa0724480	MtrunA17_Chr2g0282741	54.237	177	81	0	98	274	162	338	1.33e-66	211
Msa0724480	MtrunA17_Chr2g0282741	58.667	75	24	1	5	79	4	71	2.25e-20	89.4
Msa0724480	MtrunA17_Chr4g0040501	53.073	179	84	0	100	278	169	347	7.44e-66	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724480	AT3G08910.1	44.308	325	120	3	5	275	4	321	2.13e-90	271
Msa0724480	AT1G59725.1	43.675	332	118	5	5	274	4	328	4.08e-79	243
Msa0724480	AT5G01390.2	43.816	283	137	3	5	275	4	276	2.10e-78	239
Msa0724480	AT4G28480.2	42.517	294	137	6	5	274	4	289	7.88e-76	233
Msa0724480	AT5G01390.1	38.462	338	134	4	5	275	4	334	1.81e-74	231
Msa0724480	AT1G10350.1	58.857	175	71	1	100	274	173	346	3.47e-72	226
Msa0724480	AT1G10350.1	57.333	75	25	1	5	79	4	71	1.63e-20	90.1
Msa0724480	AT3G47940.1	51.256	199	94	1	76	274	151	346	2.95e-68	216
Msa0724480	AT3G47940.1	59.211	76	23	2	5	79	4	72	1.11e-18	85.1
Msa0724480	AT2G20560.1	56.322	174	76	0	101	274	163	336	3.62e-68	215

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Find 69 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGGTGAAAGTTGTA+AGG	0.495090	5_1:+23069769	Msa0724480:CDS
AAATGGTTGTGGGAGTAATA+TGG	0.342232	5_1:+23069674	Msa0724480:CDS
AACCCTTATAAAGCTCCTCA+AGG	0.648125	5_1:-23069743	None:intergenic
AAGGATTCCTTGAAGGGTAT+TGG	0.364039	5_1:-23069533	None:intergenic
AATTTGGTGTGATGAGAGAA+AGG	0.543533	5_1:-23069280	None:intergenic
ACATCAGATGGTCCAGATCC+TGG	0.451615	5_1:-23071382	None:intergenic
ACCACATCCTATATTCAAGA+GGG	0.666261	5_1:+23071426	Msa0724480:CDS
ACCCTTCAAGGAATCCTTCA+AGG	0.460375	5_1:+23069538	Msa0724480:CDS
AGATACATATTCAACCTGGT+TGG	0.563118	5_1:+23071314	Msa0724480:CDS
AGATTAACCAATACCCTTCA+AGG	0.493537	5_1:+23069526	Msa0724480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGGTAAATAAGAGATTATTG+AGG	-	chr5_1:23069228-23069247	None:intergenic	30.0%
CGATTACTACAAAACACTAA+AGG	+	chr5_1:23069431-23069450	Msa0724480:CDS	30.0%
TATCCTGTGAATTTGGAAAA+TGG	+	chr5_1:23069657-23069676	Msa0724480:CDS	30.0%
TGAATTTGGAAAATGGTTGT+GGG	+	chr5_1:23069664-23069683	Msa0724480:CDS	30.0%
TTTATTTAGTGGTTGTGTAG+CGG	+	chr5_1:23069924-23069943	Msa0724480:intron	30.0%
AGTAAACAAAACACAGCTTA+TGG	-	chr5_1:23070339-23070358	None:intergenic	30.0%
TGCATTAGCATTAGGATTAA+GGG	-	chr5_1:23070521-23070540	None:intergenic	30.0%
ATCTGTATAATGTACTCACA+TGG	+	chr5_1:23070826-23070845	Msa0724480:intron	30.0%
AATGTACTCACATGGAAAAA+AGG	+	chr5_1:23070834-23070853	Msa0724480:intron	30.0%
CTAAAACATACATGTAGACA+CGG	+	chr5_1:23070958-23070977	Msa0724480:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	23069160	23071854	23069160	ID=Msa0724480;Name=Msa0724480
chr5_1	mRNA	23069160	23071854	23069160	ID=Msa0724480-mRNA-1;Parent=Msa0724480;Name=Msa0724480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=260\|1\|1\|1\|1\|1\|2\|119\|280
chr5_1	exon	23069160	23069811	23069160	ID=Msa0724480-mRNA-1:exon:8644;Parent=Msa0724480-mRNA-1
chr5_1	exon	23071285	23071854	23071285	ID=Msa0724480-mRNA-1:exon:8645;Parent=Msa0724480-mRNA-1
chr5_1	five_prime_UTR	23069160	23069419	23069160	ID=Msa0724480-mRNA-1:five_prime_utr;Parent=Msa0724480-mRNA-1
chr5_1	CDS	23069420	23069811	23069420	ID=Msa0724480-mRNA-1:cds;Parent=Msa0724480-mRNA-1
chr5_1	CDS	23071285	23071735	23071285	ID=Msa0724480-mRNA-1:cds;Parent=Msa0724480-mRNA-1
chr5_1	three_prime_UTR	23071736	23071854	23071736	ID=Msa0724480-mRNA-1:three_prime_utr;Parent=Msa0724480-mRNA-1

Gene Sequence

>Msa0724480

ATGGGTAATCACGATTACTACAAAACACTAAAGGTTAAGCGTGATGCAACCCTAGAAGATTTGAATAATTCATATAACAATTTAGTTATGAAATGGCACCCAGATAAGATTAACCAATACCCTTCAAGGAATCCTTCAAGGAAACAAGAGTTTGAGGCAAATTTTAAGAGAATTTCTGAGGCTTATGAAGTTCTTAGTGATCCTAAGAAGCGTCAGATCTATGATCGCAATGGTCAATATCCTGTGAATTTGGAAAATGGTTGTGGGAGTAATATGGAGGTTGATGAAAGTGTTGGAGTTGTTGAGAGTGATTTGGTATGTAGCCTTGAGGAGCTTTATAAGGGTTGCAAAAGGAAGGTGAAAGTTGTAAGGAATGTTCCTGATGAGTTTGGGAAGTTGAAGTGTGAAGAAGAAATCTTGAAGATACATATTCAACCTGGTTGGAAGAAGGGTACAAAAGTCACTTTTCCTGGGAAAGGAAACTATCTTCCAGGATCTGGACCATCTGATGTAATTTTTGTGGTGAATGAGAGACCACATCCTATATTCAAGAGGGACGGAAAAGATTTAATAATGACCGAAAAGATATCACTTCTGGAAGCTCTTGTTGGTAAGACTCTCAACATCACAACCTTGGATGGTAGACATATCACAGTTAAATTGGATGATATTGTGACACCGGGATATGAAAAGGTCGTCGCTGATGAAGGTATGCCACTTTCAAAGGATCCAAGCAAGAGAGGAAATCTTAGAATAAAGTTTAATGTTATGTATCCACCAAGTTTGACCTCACAACAAAAATATGATGTAAGAAGGATTTTGAATGATCCTGCTGATTACTAA

Protein sequence

>Msa0724480

MGNHDYYKTLKVKRDATLEDLNNSYNNLVMKWHPDKINQYPSRNPSRKQEFEANFKRISEAYEVLSDPKKRQIYDRNGQYPVNLENGCGSNMEVDESVGVVESDLVCSLEELYKGCKRKVKVVRNVPDEFGKLKCEEEILKIHIQPGWKKGTKVTFPGKGNYLPGSGPSDVIFVVNERPHPIFKRDGKDLIMTEKISLLEALVGKTLNITTLDGRHITVKLDDIVTPGYEKVVADEGMPLSKDPSKRGNLRIKFNVMYPPSLTSQQKYDVRRILNDPADY*