Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616340 | XP_039684418.1 | 96.439 | 337 | 12 | 0 | 1 | 337 | 1 | 337 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616340 | sp|Q8H129|PPA3_ARATH | 59.451 | 328 | 124 | 5 | 12 | 336 | 40 | 361 | 8.15e-141 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616340 | A0A396GMI7 | 96.439 | 337 | 12 | 0 | 1 | 337 | 1 | 337 | 0.0 | 679 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0616340 | 0.834739 | 2.517534e-56 | -8.615850e-47 |
| Msa0008410 | Msa0616340 | 0.819896 | 9.126686e-53 | -8.615850e-47 |
| Msa0027580 | Msa0616340 | 0.813750 | 2.185085e-51 | -8.615850e-47 |
| Msa0055150 | Msa0616340 | 0.811186 | 7.940484e-51 | -8.615850e-47 |
| Msa0075340 | Msa0616340 | 0.813681 | 2.263184e-51 | -8.615850e-47 |
| Msa0076000 | Msa0616340 | 0.800573 | 1.352467e-48 | -8.615850e-47 |
| Msa0094010 | Msa0616340 | 0.832577 | 8.733847e-56 | -8.615850e-47 |
| Msa0098740 | Msa0616340 | 0.802666 | 5.033516e-49 | -8.615850e-47 |
| Msa0616340 | Msa0638690 | 0.804129 | 2.504860e-49 | -8.615850e-47 |
| Msa0616340 | Msa0639120 | 0.815452 | 9.179545e-52 | -8.615850e-47 |
| Msa0616340 | Msa0663900 | 0.841706 | 4.039626e-58 | -8.615850e-47 |
| Msa0616340 | Msa0664960 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
| Msa0616340 | Msa0669850 | 0.804455 | 2.143116e-49 | -8.615850e-47 |
| Msa0616340 | Msa0683780 | 0.801399 | 9.172188e-49 | -8.615850e-47 |
| Msa0616340 | Msa0687230 | 0.843918 | 1.042554e-58 | -8.615850e-47 |
| Msa0616340 | Msa0687630 | 0.834937 | 2.245226e-56 | -8.615850e-47 |
| Msa0616340 | Msa0697690 | 0.831500 | 1.611572e-55 | -8.615850e-47 |
| Msa0616340 | Msa0699690 | 0.971621 | 1.881023e-133 | -8.615850e-47 |
| Msa0616340 | Msa0699960 | 0.813982 | 1.942667e-51 | -8.615850e-47 |
| Msa0616340 | Msa0705040 | 0.817127 | 3.874405e-52 | -8.615850e-47 |
| Msa0616340 | Msa0707390 | 0.815865 | 7.426595e-52 | -8.615850e-47 |
| Msa0616340 | Msa0713460 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0616340 | Msa0784620 | 0.801541 | 8.578025e-49 | -8.615850e-47 |
| Msa0616340 | Msa0814250 | 0.808974 | 2.379135e-50 | -8.615850e-47 |
| Msa0616340 | Msa0817260 | 0.806612 | 7.560381e-50 | -8.615850e-47 |
| Msa0616340 | Msa0903330 | 0.824196 | 9.202971e-54 | -8.615850e-47 |
| Msa0616340 | Msa0976330 | 0.814043 | 1.883828e-51 | -8.615850e-47 |
| Msa0616340 | Msa0980940 | 0.808177 | 3.520171e-50 | -8.615850e-47 |
| Msa0616340 | Msa1003440 | 0.857236 | 1.872305e-62 | -8.615850e-47 |
| Msa0616340 | Msa1030930 | 0.812453 | 4.206610e-51 | -8.615850e-47 |
| Msa0616340 | Msa1070050 | 0.814164 | 1.771472e-51 | -8.615850e-47 |
| Msa0616340 | Msa1073400 | 0.804531 | 2.065816e-49 | -8.615850e-47 |
| Msa0616340 | Msa1089840 | 0.820867 | 5.465189e-53 | -8.615850e-47 |
| Msa0616340 | Msa1174100 | 0.801957 | 7.044540e-49 | -8.615850e-47 |
| Msa0616340 | Msa1184370 | 0.833797 | 4.339181e-56 | -8.615850e-47 |
| Msa0616340 | Msa1201830 | 0.814299 | 1.653458e-51 | -8.615850e-47 |
| Msa0616340 | Msa1207730 | 0.812751 | 3.621068e-51 | -8.615850e-47 |
| Msa0616340 | Msa1227690 | 0.842628 | 2.301942e-58 | -8.615850e-47 |
| Msa0616340 | Msa1234980 | 0.805216 | 1.485661e-49 | -8.615850e-47 |
| Msa0616340 | Msa1246530 | -0.839579 | 1.456175e-57 | -8.615850e-47 |
| Msa0616340 | Msa1254710 | 0.811545 | 6.634847e-51 | -8.615850e-47 |
| Msa0616340 | Msa1269300 | 0.806682 | 7.305544e-50 | -8.615850e-47 |
| Msa0616340 | Msa1294840 | 0.835280 | 1.839934e-56 | -8.615850e-47 |
| Msa0616340 | Msa1310690 | 0.841349 | 5.015967e-58 | -8.615850e-47 |
| Msa0616340 | Msa1333560 | 0.800570 | 1.354556e-48 | -8.615850e-47 |
| Msa0616340 | Msa1344850 | 0.807621 | 4.623264e-50 | -8.615850e-47 |
| Msa0616340 | Msa1345450 | 0.828791 | 7.388631e-55 | -8.615850e-47 |
| Msa0616340 | Msa1365150 | 0.847261 | 1.293202e-59 | -8.615850e-47 |
| Msa0616340 | Msa1367880 | 0.827526 | 1.490441e-54 | -8.615850e-47 |
| Msa0616340 | Msa1389680 | 0.808521 | 2.973868e-50 | -8.615850e-47 |
| Msa0616340 | Msa1390310 | 0.810594 | 1.066576e-50 | -8.615850e-47 |
| Msa0616340 | Msa1398860 | 0.801896 | 7.251500e-49 | -8.615850e-47 |
| Msa0616340 | Msa1404190 | 0.842698 | 2.206464e-58 | -8.615850e-47 |
| Msa0616340 | Msa1438640 | 0.851331 | 9.517127e-61 | -8.615850e-47 |
| Msa0616340 | Msa1442220 | -0.802468 | 5.530714e-49 | -8.615850e-47 |
| Msa0616340 | Msa1442850 | 0.815277 | 1.003912e-51 | -8.615850e-47 |
| Msa0616340 | Msa1457790 | 0.806000 | 1.017467e-49 | -8.615850e-47 |
| Msa0616340 | Msa1465080 | 0.814619 | 1.404711e-51 | -8.615850e-47 |
| Msa0145950 | Msa0616340 | 0.820121 | 8.109911e-53 | -8.615850e-47 |
| Msa0155430 | Msa0616340 | 0.833415 | 5.402625e-56 | -8.615850e-47 |
| Msa0172350 | Msa0616340 | 0.805399 | 1.360385e-49 | -8.615850e-47 |
| Msa0199690 | Msa0616340 | 0.803932 | 2.752445e-49 | -8.615850e-47 |
| Msa0212750 | Msa0616340 | -0.811007 | 8.681819e-51 | -8.615850e-47 |
| Msa0236980 | Msa0616340 | 0.812254 | 4.651308e-51 | -8.615850e-47 |
| Msa0394400 | Msa0616340 | 0.826996 | 1.996234e-54 | -8.615850e-47 |
| Msa0403190 | Msa0616340 | 0.826890 | 2.115986e-54 | -8.615850e-47 |
| Msa0413450 | Msa0616340 | 0.801034 | 1.089431e-48 | -8.615850e-47 |
| Msa0416400 | Msa0616340 | 0.801460 | 8.909020e-49 | -8.615850e-47 |
| Msa0449820 | Msa0616340 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0469910 | Msa0616340 | -0.819304 | 1.245713e-52 | -8.615850e-47 |
| Msa0239450 | Msa0616340 | 0.809969 | 1.454731e-50 | -8.615850e-47 |
| Msa0242680 | Msa0616340 | 0.818548 | 1.851231e-52 | -8.615850e-47 |
| Msa0259560 | Msa0616340 | 0.815874 | 7.393041e-52 | -8.615850e-47 |
| Msa0267870 | Msa0616340 | 0.809234 | 2.092915e-50 | -8.615850e-47 |
| Msa0275400 | Msa0616340 | -0.807945 | 3.943654e-50 | -8.615850e-47 |
| Msa0291020 | Msa0616340 | 0.814847 | 1.250506e-51 | -8.615850e-47 |
| Msa0291520 | Msa0616340 | 0.827514 | 1.500469e-54 | -8.615850e-47 |
| Msa0305640 | Msa0616340 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0321170 | Msa0616340 | 0.814729 | 1.328204e-51 | -8.615850e-47 |
| Msa0322590 | Msa0616340 | 0.807758 | 4.323150e-50 | -8.615850e-47 |
| Msa0506940 | Msa0616340 | 0.831795 | 1.363089e-55 | -8.615850e-47 |
| Msa0513440 | Msa0616340 | 0.823600 | 1.269055e-53 | -8.615850e-47 |
| Msa0525340 | Msa0616340 | 0.806570 | 7.714645e-50 | -8.615850e-47 |
| Msa0552810 | Msa0616340 | 0.808237 | 3.417926e-50 | -8.615850e-47 |
| Msa0560470 | Msa0616340 | 0.813423 | 2.579353e-51 | -8.615850e-47 |
| Msa0561430 | Msa0616340 | 0.805768 | 1.137940e-49 | -8.615850e-47 |
| Msa0562490 | Msa0616340 | 0.921074 | 5.703069e-88 | -8.615850e-47 |
| Msa0576980 | Msa0616340 | 0.826687 | 2.365591e-54 | -8.615850e-47 |
| Msa0581070 | Msa0616340 | 0.807968 | 3.899612e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616340 | MtrunA17_Chr8g0375781 | 96.439 | 337 | 12 | 0 | 1 | 337 | 1 | 337 | 0.0 | 679 |
| Msa0616340 | MtrunA17_Chr8g0375821 | 85.757 | 337 | 48 | 0 | 1 | 337 | 38 | 374 | 0.0 | 593 |
| Msa0616340 | MtrunA17_Chr8g0375791 | 78.731 | 268 | 51 | 1 | 1 | 262 | 1 | 268 | 7.93e-151 | 428 |
| Msa0616340 | MtrunA17_Chr8g0375761 | 60.308 | 325 | 124 | 2 | 9 | 333 | 3 | 322 | 1.49e-141 | 403 |
| Msa0616340 | MtrunA17_Chr6g0479451 | 64.052 | 306 | 108 | 2 | 31 | 336 | 27 | 330 | 3.42e-141 | 402 |
| Msa0616340 | MtrunA17_Chr8g0393271 | 61.842 | 304 | 116 | 0 | 33 | 336 | 37 | 340 | 1.26e-139 | 399 |
| Msa0616340 | MtrunA17_Chr8g0375901 | 52.434 | 267 | 50 | 3 | 71 | 337 | 1 | 190 | 6.23e-85 | 254 |
| Msa0616340 | MtrunA17_Chr8g0375921 | 78.000 | 100 | 22 | 0 | 238 | 337 | 64 | 163 | 1.86e-52 | 170 |
| Msa0616340 | MtrunA17_Chr8g0375921 | 60.448 | 134 | 31 | 4 | 1 | 134 | 1 | 112 | 7.12e-42 | 143 |
| Msa0616340 | MtrunA17_Chr8g0375891 | 96.154 | 52 | 2 | 0 | 71 | 122 | 47 | 98 | 3.26e-29 | 109 |
| Msa0616340 | MtrunA17_Chr8g0375811 | 71.429 | 70 | 19 | 1 | 268 | 337 | 6 | 74 | 4.18e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616340 | AT1G14700.1 | 59.451 | 328 | 124 | 5 | 12 | 336 | 40 | 361 | 8.29e-142 | 406 |
| Msa0616340 | AT2G01880.1 | 59.159 | 333 | 124 | 3 | 1 | 332 | 3 | 324 | 1.85e-141 | 404 |
| Msa0616340 | AT2G01890.1 | 60.938 | 320 | 123 | 2 | 13 | 332 | 12 | 329 | 6.55e-140 | 400 |
| Msa0616340 | AT1G14700.2 | 58.841 | 328 | 124 | 6 | 12 | 336 | 40 | 359 | 2.01e-138 | 397 |
| Msa0616340 | AT3G17790.1 | 55.723 | 332 | 139 | 4 | 7 | 333 | 5 | 333 | 1.38e-136 | 391 |
| Msa0616340 | AT1G25230.1 | 59.016 | 305 | 119 | 1 | 35 | 333 | 27 | 331 | 4.02e-132 | 380 |
| Msa0616340 | AT1G25230.3 | 59.016 | 305 | 119 | 1 | 35 | 333 | 50 | 354 | 9.63e-132 | 380 |
| Msa0616340 | AT1G14700.3 | 63.296 | 267 | 95 | 2 | 71 | 336 | 1 | 265 | 6.87e-125 | 359 |
| Msa0616340 | AT2G01890.3 | 62.977 | 262 | 97 | 0 | 71 | 332 | 1 | 262 | 5.98e-122 | 352 |
| Msa0616340 | AT2G01890.2 | 55.937 | 320 | 111 | 3 | 13 | 332 | 12 | 301 | 4.34e-119 | 346 |
| Msa0616340 | AT1G25230.2 | 60.456 | 263 | 104 | 0 | 71 | 333 | 1 | 263 | 8.98e-119 | 343 |
| Msa0616340 | AT1G14700.4 | 60.870 | 253 | 93 | 3 | 12 | 262 | 40 | 288 | 1.16e-111 | 327 |
Find 75 sgRNAs with CRISPR-Local
Find 454 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATAGGTGTGCTTTCC+TGG | 0.193260 | 4_2:-66154989 | None:intergenic |
| TAGCGTCTCATTATGCTTAT+TGG | 0.213385 | 4_2:+66150673 | Msa0616340:CDS |
| TACGAAAGAATAGTTCTTAA+TGG | 0.221917 | 4_2:-66156081 | None:intergenic |
| GCAGCTTCTTCCCATCTTAA+AGG | 0.266349 | 4_2:+66155509 | Msa0616340:CDS |
| ATTGAAATGCATATCTTTCC+TGG | 0.298578 | 4_2:+66156180 | Msa0616340:three_prime_UTR |
| TTTGATGAAATGCATATCTT+TGG | 0.308527 | 4_2:+66156124 | Msa0616340:three_prime_UTR |
| CCCCAAGTCTGCAACAAATA+TGG | 0.320259 | 4_2:+66154234 | Msa0616340:CDS |
| TGATACAATTTCAATTCTTT+CGG | 0.326036 | 4_2:-66155863 | None:intergenic |
| ACTTAAAGAAGCTGCATAGA+TGG | 0.363238 | 4_2:+66155991 | Msa0616340:exon |
| ATTCGTAGAAGAGTACTTTA+CGG | 0.375003 | 4_2:+66154964 | Msa0616340:CDS |
| ATAGAATTTGTGATTTCAAC+TGG | 0.390223 | 4_2:+66154134 | Msa0616340:CDS |
| TACCATATTTGTTGCAGACT+TGG | 0.392002 | 4_2:-66154236 | None:intergenic |
| ACCATATTTGTTGCAGACTT+GGG | 0.406313 | 4_2:-66154235 | None:intergenic |
| TGGTGCAATCCACGGCAAAA+TGG | 0.406819 | 4_2:+66155418 | Msa0616340:CDS |
| TTACCGTGCAGAACTCTTGA+AGG | 0.412521 | 4_2:+66155036 | Msa0616340:CDS |
| ACGAAAGAATAGTTCTTAAT+GGG | 0.413516 | 4_2:-66156080 | None:intergenic |
| TGATTCATTTACCTTTAAGA+TGG | 0.422252 | 4_2:-66155520 | None:intergenic |
| AGGCGGATCAAAGGCATGGG+GGG | 0.422798 | 4_2:+66155820 | Msa0616340:CDS |
| TCAATCTCTTGTCGCCCATC+AGG | 0.430733 | 4_2:+66150811 | Msa0616340:CDS |
| GGCGATGTTGAAGCACAATT+AGG | 0.436553 | 4_2:+66154529 | Msa0616340:CDS |
| GAAGAGTACTTTACGGATCC+AGG | 0.443975 | 4_2:+66154971 | Msa0616340:CDS |
| GTAGGAAGTTGATTCAGCTT+TGG | 0.444752 | 4_2:+66155398 | Msa0616340:intron |
| GGCGGATCAAAGGCATGGGG+GGG | 0.446068 | 4_2:+66155821 | Msa0616340:CDS |
| CAGGAAAGCACACCTATGAT+TGG | 0.456577 | 4_2:+66154990 | Msa0616340:CDS |
| GAAGCTGCTCCACAAGCTCT+TGG | 0.468468 | 4_2:-66155494 | None:intergenic |
| GTTGGTGATTGGGGAAGAAA+AGG | 0.471925 | 4_2:+66150779 | Msa0616340:CDS |
| CATCATCCTATCAAATCTGC+TGG | 0.475207 | 4_2:+66155456 | Msa0616340:CDS |
| AATGTTGATGCATACATCAA+TGG | 0.479712 | 4_2:+66155644 | Msa0616340:CDS |
| TTCAATTCTTTCGGATCCCA+TGG | 0.481311 | 4_2:-66155854 | None:intergenic |
| CCTTGGAAGCTTCTCAGCTA+TGG | 0.481979 | 4_2:-66150708 | None:intergenic |
| TGAGGCCCAGCAGATTTGAT+AGG | 0.493170 | 4_2:-66155462 | None:intergenic |
| TTTAGATGGTGTTCAAACCT+TGG | 0.498027 | 4_2:-66150725 | None:intergenic |
| GAGGCGGATCAAAGGCATGG+GGG | 0.498688 | 4_2:+66155819 | Msa0616340:CDS |
| AAGCTGCTCCACAAGCTCTT+GGG | 0.499151 | 4_2:-66155493 | None:intergenic |
| ACAAATGACTCGTAGAATGC+TGG | 0.503005 | 4_2:-66154197 | None:intergenic |
| GAATTGAAATTGTATCATGA+TGG | 0.508338 | 4_2:+66155869 | Msa0616340:CDS |
| ATCAAATCTGCTGGGCCTCA+TGG | 0.519812 | 4_2:+66155465 | Msa0616340:CDS |
| TGGTAATACCCAAGAGCTTG+TGG | 0.520245 | 4_2:+66155485 | Msa0616340:CDS |
| TTCAGCTTTGGTGCAATCCA+CGG | 0.527366 | 4_2:+66155410 | Msa0616340:CDS |
| TGGAGGCGGATCAAAGGCAT+GGG | 0.527611 | 4_2:+66155817 | Msa0616340:CDS |
| AAGCGCTGAAAGCCATGGCT+TGG | 0.529380 | 4_2:+66150609 | Msa0616340:exon |
| TGGGACGACAGAAATATTTG+TGG | 0.529687 | 4_2:-66156061 | None:intergenic |
| CCATAGCTGAGAAGCTTCCA+AGG | 0.529779 | 4_2:+66150708 | Msa0616340:CDS |
| GGAGGCGGATCAAAGGCATG+GGG | 0.529998 | 4_2:+66155818 | Msa0616340:CDS |
| CAACATCGCCTCTGTAGTCA+TGG | 0.533316 | 4_2:-66154516 | None:intergenic |
| ACCTCAAGAAAATACAGTAT+AGG | 0.534523 | 4_2:-66156031 | None:intergenic |
| CTTTCAAGCGCTGAAAGCCA+TGG | 0.536646 | 4_2:+66150604 | Msa0616340:exon |
| AATTGAAATTGTATCATGAT+GGG | 0.536730 | 4_2:+66155870 | Msa0616340:CDS |
| CAATGGACATGACCATTGCT+TGG | 0.540065 | 4_2:+66155661 | Msa0616340:CDS |
| GATTCATTTACCTTTAAGAT+GGG | 0.541987 | 4_2:-66155519 | None:intergenic |
| GTGGAGGCGGATCAAAGGCA+TGG | 0.542993 | 4_2:+66155816 | Msa0616340:CDS |
| GGGGTAAATAATTACCTGAT+GGG | 0.545951 | 4_2:-66150825 | None:intergenic |
| GTAGAATACAATACTAGCAT+TGG | 0.546691 | 4_2:-66155924 | None:intergenic |
| AAGCACGCCTTTCCAATCAT+AGG | 0.546715 | 4_2:-66155002 | None:intergenic |
| AAGTTAAGAGATTGTTGCTG+TGG | 0.549446 | 4_2:-66150749 | None:intergenic |
| CACAAGTGGAGGCGGATCAA+AGG | 0.550379 | 4_2:+66155811 | Msa0616340:CDS |
| CCATATTTGTTGCAGACTTG+GGG | 0.560850 | 4_2:-66154234 | None:intergenic |
| GTAAAGTACTCTTCTACGAA+TGG | 0.570621 | 4_2:-66154962 | None:intergenic |
| TAACAGAAGATAATATGCGT+TGG | 0.572100 | 4_2:-66150640 | None:intergenic |
| ATAGTTGGTCATTTCAAACC+AGG | 0.572602 | 4_2:-66156198 | None:intergenic |
| CAATTATGTGCTCCAAGCAA+TGG | 0.573533 | 4_2:-66155673 | None:intergenic |
| CACGGCAAAATGGAAGATAG+TGG | 0.575895 | 4_2:+66155428 | Msa0616340:CDS |
| TTGGTTTAAACACCAAGCCA+TGG | 0.579442 | 4_2:-66150621 | None:intergenic |
| ATAAGCATAATGAGACGCTA+AGG | 0.586457 | 4_2:-66150670 | None:intergenic |
| ATCATCCTATCAAATCTGCT+GGG | 0.593712 | 4_2:+66155457 | Msa0616340:CDS |
| AGCACATAATTGACAAAGAG+AGG | 0.601476 | 4_2:+66155684 | Msa0616340:CDS |
| CTGCAACAAATATGGTACAA+TGG | 0.611375 | 4_2:+66154242 | Msa0616340:CDS |
| AAGCACACCTATGATTGGAA+AGG | 0.636206 | 4_2:+66154995 | Msa0616340:CDS |
| AAATTGTATCATGATGGGCA+AGG | 0.637534 | 4_2:+66155875 | Msa0616340:CDS |
| TAAACTCTACAAAATTAGAG+AGG | 0.652503 | 4_2:+66150514 | Msa0616340:five_prime_UTR |
| TTAGAGAGGAGCAATTAGAG+AGG | 0.655905 | 4_2:+66150528 | Msa0616340:five_prime_UTR |
| TCTGCACGGTAAGATTCAAG+AGG | 0.677833 | 4_2:-66155025 | None:intergenic |
| TTGGGAAACCATGACTACAG+AGG | 0.690051 | 4_2:+66154508 | Msa0616340:CDS |
| TAACCTTCAAGAGTTCTGCA+CGG | 0.709109 | 4_2:-66155039 | None:intergenic |
| AGCTCTTGGGTATTACCATG+AGG | 0.717481 | 4_2:-66155480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTAAATTTTGTTGTT+TGG | + | chr4_2:66151504-66151523 | Msa0616340:intron | 10.0% |
| !!! | ATGAATGTATTTTTTTTAAT+CGG | - | chr4_2:66153878-66153897 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAATATTTTCAT+TGG | - | chr4_2:66154473-66154492 | None:intergenic | 10.0% |
| !!! | AAAAAAATTGTTTATTTCTA+AGG | + | chr4_2:66154667-66154686 | Msa0616340:intron | 10.0% |
| !!! | TTTTTAAATAAGAACTTTTT+TGG | + | chr4_2:66155138-66155157 | Msa0616340:intron | 10.0% |
| !!! | ACGTTTTTATTAAATTGATA+AGG | + | chr4_2:66151316-66151335 | Msa0616340:intron | 15.0% |
| !!! | AAAAAAGAGTTTAATTTCAT+TGG | + | chr4_2:66151665-66151684 | Msa0616340:intron | 15.0% |
| !! | GATCATATTACTTATTTAAA+TGG | + | chr4_2:66151718-66151737 | Msa0616340:intron | 15.0% |
| !! | AACAAAATAAATAAATTCAG+GGG | - | chr4_2:66153176-66153195 | None:intergenic | 15.0% |
| !! | GAACAAAATAAATAAATTCA+GGG | - | chr4_2:66153177-66153196 | None:intergenic | 15.0% |
| !!! | AGTAATAAGAAAATTTTGAA+GGG | + | chr4_2:66153218-66153237 | Msa0616340:intron | 15.0% |
| !!! | GAAATAAACAATTTTTTTCT+AGG | - | chr4_2:66154665-66154684 | None:intergenic | 15.0% |
| !!! | AGACACAAATTTTTATTTTT+CGG | + | chr4_2:66154744-66154763 | Msa0616340:intron | 15.0% |
| !!! | ATGATATATAAGTTTCTTTT+AGG | - | chr4_2:66154874-66154893 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAATCAAGTAAT+AGG | + | chr4_2:66155186-66155205 | Msa0616340:intron | 15.0% |
| !! | TTAAAAAAACCAAAAAAGTT+CGG | - | chr4_2:66155282-66155301 | None:intergenic | 15.0% |
| !!! | GAATGTGTGTATATTAATTT+TGG | + | chr4_2:66151176-66151195 | Msa0616340:intron | 20.0% |
| !!! | ATTAATTTTGGTTTAGCATA+AGG | + | chr4_2:66151188-66151207 | Msa0616340:intron | 20.0% |
| !!! | TGGGTCTATAATATTTTTAT+AGG | - | chr4_2:66151433-66151452 | None:intergenic | 20.0% |
| !! | AAAAATATTATAGACCCATT+AGG | + | chr4_2:66151435-66151454 | Msa0616340:intron | 20.0% |
| !! | AAATATGCGAAAAATTAATG+TGG | - | chr4_2:66151577-66151596 | None:intergenic | 20.0% |
| !! | ATTACTTATTTAAATGGTGT+TGG | + | chr4_2:66151724-66151743 | Msa0616340:intron | 20.0% |
| !!! | CTTTAAAGTCAATTTTGAAA+AGG | + | chr4_2:66151888-66151907 | Msa0616340:intron | 20.0% |
| !!! | TTGTACTTTTCTTAATTGTA+TGG | + | chr4_2:66152058-66152077 | Msa0616340:intron | 20.0% |
| !! | AGAAAATAAATTTGGTAAAG+TGG | + | chr4_2:66152354-66152373 | Msa0616340:intron | 20.0% |
| !! | GAAAATAAATTTGGTAAAGT+GGG | + | chr4_2:66152355-66152374 | Msa0616340:intron | 20.0% |
| !! | CGAACAAAATAAATAAATTC+AGG | - | chr4_2:66153178-66153197 | None:intergenic | 20.0% |
| !!! | GAGTAATAAGAAAATTTTGA+AGG | + | chr4_2:66153217-66153236 | Msa0616340:intron | 20.0% |
| !!! | TGATATTAAAGTGTTTTACA+TGG | + | chr4_2:66153345-66153364 | Msa0616340:intron | 20.0% |
| !!! | TGTTTTACTAGAGTTTATTT+TGG | + | chr4_2:66153436-66153455 | Msa0616340:intron | 20.0% |
| !!! | TTTATTTTGGTGATTGTATT+CGG | + | chr4_2:66153449-66153468 | Msa0616340:intron | 20.0% |
| !!! | TTGTTTTTTAAACTTGAGTA+TGG | - | chr4_2:66153952-66153971 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTGATTTTCAGA+TGG | + | chr4_2:66154088-66154107 | Msa0616340:intron | 20.0% |
| !!! | TTTTTGTTTGATTTTCAGAT+GGG | + | chr4_2:66154089-66154108 | Msa0616340:intron | 20.0% |
| !!! | AAGCAACTATTTTGAAAAAA+AGG | - | chr4_2:66154407-66154426 | None:intergenic | 20.0% |
| !! | TTATAAAATAGAAACACCTA+CGG | - | chr4_2:66154441-66154460 | None:intergenic | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | - | chr4_2:66154555-66154574 | None:intergenic | 20.0% |
| !! | AAGAAACTTATATATCATCT+TGG | + | chr4_2:66154876-66154895 | Msa0616340:intron | 20.0% |
| !! | AGAAACTTATATATCATCTT+GGG | + | chr4_2:66154877-66154896 | Msa0616340:intron | 20.0% |
| !! | TGATACAATTTCAATTCTTT+CGG | - | chr4_2:66155866-66155885 | None:intergenic | 20.0% |
| !! | AATTGAAATTGTATCATGAT+GGG | + | chr4_2:66155870-66155889 | Msa0616340:CDS | 20.0% |
| ! | TAAACTCTACAAAATTAGAG+AGG | + | chr4_2:66150514-66150533 | Msa0616340:five_prime_UTR | 25.0% |
| !! | TAGAGTTTTTCTTTTTGCAA+TGG | - | chr4_2:66150556-66150575 | None:intergenic | 25.0% |
| ! | AATTACTCAGATTGAAGTTT+GGG | - | chr4_2:66150848-66150867 | None:intergenic | 25.0% |
| ! | TAATTACTCAGATTGAAGTT+TGG | - | chr4_2:66150849-66150868 | None:intergenic | 25.0% |
| !! | TTCAATTTTCAAATGACTCT+TGG | - | chr4_2:66150940-66150959 | None:intergenic | 25.0% |
| ! | TTTGTCGAACATAATAATGT+TGG | + | chr4_2:66151034-66151053 | Msa0616340:intron | 25.0% |
| ! | TCATTCATAGTTACTTAAGT+AGG | - | chr4_2:66151465-66151484 | None:intergenic | 25.0% |
| !! | ACTTTTCTTAATTGTATGGA+AGG | + | chr4_2:66152062-66152081 | Msa0616340:intron | 25.0% |
| ! | TGTGTCAATCTAAAAGAAAT+GGG | + | chr4_2:66152384-66152403 | Msa0616340:intron | 25.0% |
| ! | CAAAAAATACAGAAATGAGT+CGG | - | chr4_2:66152549-66152568 | None:intergenic | 25.0% |
| !!! | TTCTGTATTTTTTGTCTAGA+TGG | + | chr4_2:66152555-66152574 | Msa0616340:intron | 25.0% |
| !!! | TAGATGGTGGAAAAAAAAAT+TGG | + | chr4_2:66152571-66152590 | Msa0616340:intron | 25.0% |
| ! | GAAAAAAAAATTGGTTAGAC+CGG | + | chr4_2:66152580-66152599 | Msa0616340:intron | 25.0% |
| ! | CAAAATCACAAAACAAAAAG+AGG | - | chr4_2:66153100-66153119 | None:intergenic | 25.0% |
| !!! | AGAAAATTTTGAAGGGTTTT+TGG | + | chr4_2:66153225-66153244 | Msa0616340:intron | 25.0% |
| !!! | TGATTTGGTATACAATCATT+TGG | + | chr4_2:66153249-66153268 | Msa0616340:intron | 25.0% |
| !! | GATTTGGTATACAATCATTT+GGG | + | chr4_2:66153250-66153269 | Msa0616340:intron | 25.0% |
| !!! | TATTTTTGAAAACGTGAAGA+AGG | + | chr4_2:66153303-66153322 | Msa0616340:intron | 25.0% |
| ! | ACTCTAGTAAAACAATTACA+AGG | - | chr4_2:66153430-66153449 | None:intergenic | 25.0% |
| !! | TTTCTTTGGTGTATTTAAGT+TGG | + | chr4_2:66153736-66153755 | Msa0616340:intron | 25.0% |
| !!! | GGTACTGATAAAAACTAAAA+AGG | - | chr4_2:66154049-66154068 | None:intergenic | 25.0% |
| ! | AAATCAAACAAAAATGAGGA+GGG | - | chr4_2:66154083-66154102 | None:intergenic | 25.0% |
| ! | AAAATCAAACAAAAATGAGG+AGG | - | chr4_2:66154084-66154103 | None:intergenic | 25.0% |
| ! | CTGAAAATCAAACAAAAATG+AGG | - | chr4_2:66154087-66154106 | None:intergenic | 25.0% |
| ! | ATAGAATTTGTGATTTCAAC+TGG | + | chr4_2:66154134-66154153 | Msa0616340:CDS | 25.0% |
| ! | TCGAATAAAATTACTTCAAC+CGG | - | chr4_2:66154312-66154331 | None:intergenic | 25.0% |
| ! | TGATTGATTGTAAATGAAAG+AGG | - | chr4_2:66154365-66154384 | None:intergenic | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | - | chr4_2:66154556-66154575 | None:intergenic | 25.0% |
| !! | AGATCTTTTATTCTTGATAC+AGG | + | chr4_2:66154592-66154611 | Msa0616340:CDS | 25.0% |
| !!! | CTTGCATTAAGTTTGTTAAA+AGG | - | chr4_2:66154625-66154644 | None:intergenic | 25.0% |
| ! | AAGGTCTTCTAAACAAAATT+TGG | + | chr4_2:66154686-66154705 | Msa0616340:intron | 25.0% |
| !!! | TTTTTTTGGTACAGATAATG+TGG | + | chr4_2:66154916-66154935 | Msa0616340:intron | 25.0% |
| !! | TAATGTGGAATTTTTCTTTG+TGG | + | chr4_2:66154931-66154950 | Msa0616340:CDS | 25.0% |
| !!! | ATAAGAACTTTTTTGGATTC+TGG | + | chr4_2:66155145-66155164 | Msa0616340:intron | 25.0% |
| !!! | GATTCATTTACCTTTAAGAT+GGG | - | chr4_2:66155522-66155541 | None:intergenic | 25.0% |
| !! | TGATTCATTTACCTTTAAGA+TGG | - | chr4_2:66155523-66155542 | None:intergenic | 25.0% |
| ! | AACTGGTTACAAATTGTAAT+AGG | - | chr4_2:66155600-66155619 | None:intergenic | 25.0% |
| ! | GAATTGAAATTGTATCATGA+TGG | + | chr4_2:66155869-66155888 | Msa0616340:CDS | 25.0% |
| !! | ATTGTATTCTACGATGTTTT+TGG | + | chr4_2:66155935-66155954 | Msa0616340:CDS | 25.0% |
| ! | ACGAAAGAATAGTTCTTAAT+GGG | - | chr4_2:66156083-66156102 | None:intergenic | 25.0% |
| ! | TACGAAAGAATAGTTCTTAA+TGG | - | chr4_2:66156084-66156103 | None:intergenic | 25.0% |
| ! | TTTGATGAAATGCATATCTT+TGG | + | chr4_2:66156124-66156143 | Msa0616340:three_prime_UTR | 25.0% |
| TAACAGAAGATAATATGCGT+TGG | - | chr4_2:66150643-66150662 | None:intergenic | 30.0% | |
| ! | GCAACAATCTCTTAACTTTT+TGG | + | chr4_2:66150754-66150773 | Msa0616340:CDS | 30.0% |
| !!! | TCTCTTAACTTTTTGGTTGT+TGG | + | chr4_2:66150761-66150780 | Msa0616340:CDS | 30.0% |
| ATTACTCAGATTGAAGTTTG+GGG | - | chr4_2:66150847-66150866 | None:intergenic | 30.0% | |
| ! | GCAATTTTCCATTGAAAGTA+TGG | + | chr4_2:66150877-66150896 | Msa0616340:intron | 30.0% |
| TGGTTCTTTCTAAGTGTATT+TGG | + | chr4_2:66150914-66150933 | Msa0616340:intron | 30.0% | |
| TGTTCGACAAAAAGATAAAG+TGG | - | chr4_2:66151025-66151044 | None:intergenic | 30.0% | |
| TTATCTATCTCTATCTCTCA+TGG | - | chr4_2:66151139-66151158 | None:intergenic | 30.0% | |
| !!! | GTCTGATCTTTTTAGCTAAA+TGG | - | chr4_2:66151361-66151380 | None:intergenic | 30.0% |
| TTAGCTAAAAAGATCAGACT+AGG | + | chr4_2:66151362-66151381 | Msa0616340:intron | 30.0% | |
| GATTTAGGAATAGGTCTAAA+AGG | - | chr4_2:66151401-66151420 | None:intergenic | 30.0% | |
| TTGTAGTCTGATTTAGGAAT+AGG | - | chr4_2:66151410-66151429 | None:intergenic | 30.0% | |
| TATAGGTTGTAGTCTGATTT+AGG | - | chr4_2:66151416-66151435 | None:intergenic | 30.0% | |
| TCATAGTTACTTAAGTAGGT+CGG | - | chr4_2:66151461-66151480 | None:intergenic | 30.0% | |
| ! | ACTTATTTAAATGGTGTTGG+CGG | + | chr4_2:66151727-66151746 | Msa0616340:intron | 30.0% |
| !! | ACCTTTTACAAATGTCGATT+GGG | - | chr4_2:66151792-66151811 | None:intergenic | 30.0% |
| ! | TACCTTTTACAAATGTCGAT+TGG | - | chr4_2:66151793-66151812 | None:intergenic | 30.0% |
| AATCGACATTTGTAAAAGGT+AGG | + | chr4_2:66151792-66151811 | Msa0616340:intron | 30.0% | |
| ATTTGTAAAAGGTAGGAACT+GGG | + | chr4_2:66151799-66151818 | Msa0616340:intron | 30.0% | |
| GAAAATAAGTCGAGAATGTA+TGG | + | chr4_2:66151864-66151883 | Msa0616340:intron | 30.0% | |
| TACTGGAAAAGTTGTTTAGT+TGG | + | chr4_2:66152002-66152021 | Msa0616340:intron | 30.0% | |
| !!! | CATGTCTTTTTTGAAGATGT+CGG | + | chr4_2:66152265-66152284 | Msa0616340:intron | 30.0% |
| AGGCGGTAAGAAAATAAATT+TGG | + | chr4_2:66152346-66152365 | Msa0616340:intron | 30.0% | |
| AATAAATTTGGTAAAGTGGG+AGG | + | chr4_2:66152358-66152377 | Msa0616340:intron | 30.0% | |
| GTGTGTCAATCTAAAAGAAA+TGG | + | chr4_2:66152383-66152402 | Msa0616340:intron | 30.0% | |
| GTGTCAATCTAAAAGAAATG+GGG | + | chr4_2:66152385-66152404 | Msa0616340:intron | 30.0% | |
| TGTCAATCTAAAAGAAATGG+GGG | + | chr4_2:66152386-66152405 | Msa0616340:intron | 30.0% | |
| !!! | TGTATTTTTTGTCTAGATGG+TGG | + | chr4_2:66152558-66152577 | Msa0616340:intron | 30.0% |
| ! | TTTGGAGCAAAAATATGCTA+AGG | + | chr4_2:66152653-66152672 | Msa0616340:intron | 30.0% |
| CACAAATATTCAACACATCA+AGG | - | chr4_2:66152905-66152924 | None:intergenic | 30.0% | |
| TATTCCTATGGATGATTTGA+AGG | + | chr4_2:66153034-66153053 | Msa0616340:intron | 30.0% | |
| ! | ATTTTGTTCGACTATCTAAG+TGG | + | chr4_2:66153188-66153207 | Msa0616340:intron | 30.0% |
| ! | TTTTGTTCGACTATCTAAGT+GGG | + | chr4_2:66153189-66153208 | Msa0616340:intron | 30.0% |
| TTTGTATTACGAGTGATGTT+GGG | + | chr4_2:66153402-66153421 | Msa0616340:intron | 30.0% | |
| ! | TGTTTTGTGCTTTCTTTCTT+TGG | + | chr4_2:66153722-66153741 | Msa0616340:intron | 30.0% |
| GTGGTATTTCTTTGTTAGTT+TGG | + | chr4_2:66153765-66153784 | Msa0616340:intron | 30.0% | |
| ! | GGTGACAATTTTTATGATGA+TGG | + | chr4_2:66154155-66154174 | Msa0616340:CDS | 30.0% |
| !!! | TTTTATGATGATGGCCTAAA+AGG | + | chr4_2:66154164-66154183 | Msa0616340:CDS | 30.0% |
| ATAAAATTACTTCAACCGGA+GGG | - | chr4_2:66154308-66154327 | None:intergenic | 30.0% | |
| AATAAAATTACTTCAACCGG+AGG | - | chr4_2:66154309-66154328 | None:intergenic | 30.0% | |
| ! | TCATTTTACTGTACCAGTTT+TGG | + | chr4_2:66154489-66154508 | Msa0616340:intron | 30.0% |
| ! | CATTTTACTGTACCAGTTTT+GGG | + | chr4_2:66154490-66154509 | Msa0616340:intron | 30.0% |
| TAAGACAAAAAGATAGCAGA+TGG | + | chr4_2:66154560-66154579 | Msa0616340:CDS | 30.0% | |
| AAGACAAAAAGATAGCAGAT+GGG | + | chr4_2:66154561-66154580 | Msa0616340:CDS | 30.0% | |
| !! | ATTCGTAGAAGAGTACTTTA+CGG | + | chr4_2:66154964-66154983 | Msa0616340:CDS | 30.0% |
| AAAAAACCAAAAAAGTTCGG+TGG | - | chr4_2:66155279-66155298 | None:intergenic | 30.0% | |
| ! | CTGACATTTGGAATTATTGT+AGG | + | chr4_2:66155380-66155399 | Msa0616340:intron | 30.0% |
| TACAAATTGTAATAGGCACA+AGG | - | chr4_2:66155593-66155612 | None:intergenic | 30.0% | |
| AATGTTGATGCATACATCAA+TGG | + | chr4_2:66155644-66155663 | Msa0616340:CDS | 30.0% | |
| !! | TGTTTTTGTACACATTGTAG+TGG | + | chr4_2:66155776-66155795 | Msa0616340:intron | 30.0% |
| !!! | GGAATTCATTTTTTCACAAG+TGG | + | chr4_2:66155797-66155816 | Msa0616340:CDS | 30.0% |
| !!! | ATTCATTTTTTCACAAGTGG+AGG | + | chr4_2:66155800-66155819 | Msa0616340:CDS | 30.0% |
| GTAGAATACAATACTAGCAT+TGG | - | chr4_2:66155927-66155946 | None:intergenic | 30.0% | |
| ACCTCAAGAAAATACAGTAT+AGG | - | chr4_2:66156034-66156053 | None:intergenic | 30.0% | |
| ATTGAAATGCATATCTTTCC+TGG | + | chr4_2:66156180-66156199 | Msa0616340:three_prime_UTR | 30.0% | |
| ATAAGCATAATGAGACGCTA+AGG | - | chr4_2:66150673-66150692 | None:intergenic | 35.0% | |
| TAGCGTCTCATTATGCTTAT+TGG | + | chr4_2:66150673-66150692 | Msa0616340:CDS | 35.0% | |
| TTTAGATGGTGTTCAAACCT+TGG | - | chr4_2:66150728-66150747 | None:intergenic | 35.0% | |
| !!! | ATTGTTGCTGTGGTTTTAGA+TGG | - | chr4_2:66150742-66150761 | None:intergenic | 35.0% |
| AAGTTAAGAGATTGTTGCTG+TGG | - | chr4_2:66150752-66150771 | None:intergenic | 35.0% | |
| !!! | ACTTTTTGGTTGTTGGTGAT+TGG | + | chr4_2:66150768-66150787 | Msa0616340:CDS | 35.0% |
| !!! | CTTTTTGGTTGTTGGTGATT+GGG | + | chr4_2:66150769-66150788 | Msa0616340:CDS | 35.0% |
| !!! | TTTTTGGTTGTTGGTGATTG+GGG | + | chr4_2:66150770-66150789 | Msa0616340:CDS | 35.0% |
| GGGGTAAATAATTACCTGAT+GGG | - | chr4_2:66150828-66150847 | None:intergenic | 35.0% | |
| TGGGGTAAATAATTACCTGA+TGG | - | chr4_2:66150829-66150848 | None:intergenic | 35.0% | |
| GACAAAAAGATAAAGTGGAG+TGG | - | chr4_2:66151020-66151039 | None:intergenic | 35.0% | |
| TGAATAGGTGTATGCTTGTA+TGG | - | chr4_2:66151110-66151129 | None:intergenic | 35.0% | |
| AGAAATTGCAGCATACTTCT+AGG | + | chr4_2:66151224-66151243 | Msa0616340:intron | 35.0% | |
| GAAATTGCAGCATACTTCTA+GGG | + | chr4_2:66151225-66151244 | Msa0616340:intron | 35.0% | |
| AAATTGCAGCATACTTCTAG+GGG | + | chr4_2:66151226-66151245 | Msa0616340:intron | 35.0% | |
| ACCCAATCGACATTTGTAAA+AGG | + | chr4_2:66151788-66151807 | Msa0616340:intron | 35.0% | |
| CATTTGTAAAAGGTAGGAAC+TGG | + | chr4_2:66151798-66151817 | Msa0616340:intron | 35.0% | |
| CGGTAAATGAGGTGATAATT+TGG | + | chr4_2:66151837-66151856 | Msa0616340:intron | 35.0% | |
| !! | TTTTGAAAAGGCGTAAGACT+CGG | + | chr4_2:66151900-66151919 | Msa0616340:intron | 35.0% |
| ! | ACTTTGAAGGTAATTCTGAG+AGG | + | chr4_2:66151948-66151967 | Msa0616340:intron | 35.0% |
| !!! | AATTCTGAGAGGTTTTGAGA+TGG | + | chr4_2:66151959-66151978 | Msa0616340:intron | 35.0% |
| !!! | AGAGGTTTTGAGATGGTTTT+TGG | + | chr4_2:66151966-66151985 | Msa0616340:intron | 35.0% |
| !!! | GAGGTTTTGAGATGGTTTTT+GGG | + | chr4_2:66151967-66151986 | Msa0616340:intron | 35.0% |
| !! | AGTTGTTTAGTTGGTGTCAA+TGG | + | chr4_2:66152011-66152030 | Msa0616340:intron | 35.0% |
| TCCTAGAATATGCATCAACA+GGG | - | chr4_2:66152115-66152134 | None:intergenic | 35.0% | |
| ATCCTAGAATATGCATCAAC+AGG | - | chr4_2:66152116-66152135 | None:intergenic | 35.0% | |
| ! | TCGGATAGTTCTTTTCAACT+CGG | + | chr4_2:66152217-66152236 | Msa0616340:intron | 35.0% |
| ! | ATTCAGAGGGAGTTTTTATG+AGG | + | chr4_2:66152314-66152333 | Msa0616340:intron | 35.0% |
| GTCAATCTAAAAGAAATGGG+GGG | + | chr4_2:66152387-66152406 | Msa0616340:intron | 35.0% | |
| ! | TGGGGATCAGATTTTGAATA+GGG | + | chr4_2:66152511-66152530 | Msa0616340:intron | 35.0% |
| ! | AGATTTTGAATAGGGTGGAT+TGG | + | chr4_2:66152519-66152538 | Msa0616340:intron | 35.0% |
| !! | GATTTTGAATAGGGTGGATT+GGG | + | chr4_2:66152520-66152539 | Msa0616340:intron | 35.0% |
| !!! | ATTTTGAATAGGGTGGATTG+GGG | + | chr4_2:66152521-66152540 | Msa0616340:intron | 35.0% |
| AAAAAAATTGGTTAGACCGG+TGG | + | chr4_2:66152583-66152602 | Msa0616340:intron | 35.0% | |
| AGCAAAAATATGCTAAGGTG+AGG | + | chr4_2:66152658-66152677 | Msa0616340:intron | 35.0% | |
| GCAAAAATATGCTAAGGTGA+GGG | + | chr4_2:66152659-66152678 | Msa0616340:intron | 35.0% | |
| AGATTTACTAGTTCACCTAG+TGG | + | chr4_2:66152751-66152770 | Msa0616340:intron | 35.0% | |
| GATTTACTAGTTCACCTAGT+GGG | + | chr4_2:66152752-66152771 | Msa0616340:intron | 35.0% | |
| ! | TCTCTGTCTTTTCTGTCTTT+GGG | + | chr4_2:66152782-66152801 | Msa0616340:intron | 35.0% |
| TGCTTATTCTTTGATTGCTG+AGG | + | chr4_2:66152860-66152879 | Msa0616340:intron | 35.0% | |
| TTTGTGTGTTTCGTCATGTT+TGG | + | chr4_2:66152919-66152938 | Msa0616340:intron | 35.0% | |
| GAGAAAGCAATAGTCTTTGT+CGG | - | chr4_2:66152957-66152976 | None:intergenic | 35.0% | |
| CTTGAAAGCTCCTTCATAAT+AGG | + | chr4_2:66152976-66152995 | Msa0616340:intron | 35.0% | |
| TAGTGGGAATCCTATTATGA+AGG | - | chr4_2:66152989-66153008 | None:intergenic | 35.0% | |
| TGAGCTAAATCACTTCTAGT+GGG | - | chr4_2:66153005-66153024 | None:intergenic | 35.0% | |
| GGAATAATCAAAACCAAACC+AGG | - | chr4_2:66153155-66153174 | None:intergenic | 35.0% | |
| TTTGTTCGACTATCTAAGTG+GGG | + | chr4_2:66153190-66153209 | Msa0616340:intron | 35.0% | |
| !!! | TGAAGGGTTTTTGGTTGATT+TGG | + | chr4_2:66153234-66153253 | Msa0616340:intron | 35.0% |
| ATACAATCATTTGGGCTATC+TGG | + | chr4_2:66153258-66153277 | Msa0616340:intron | 35.0% | |
| ! | AAGTGTTTTACATGGAGATG+AGG | + | chr4_2:66153353-66153372 | Msa0616340:intron | 35.0% |
| ! | AGTGTTTTACATGGAGATGA+GGG | + | chr4_2:66153354-66153373 | Msa0616340:intron | 35.0% |
| GTTTGTATTACGAGTGATGT+TGG | + | chr4_2:66153401-66153420 | Msa0616340:intron | 35.0% | |
| ! | TTATTTGTTTGGTTGGTGTC+TGG | + | chr4_2:66153543-66153562 | Msa0616340:intron | 35.0% |
| !! | TTGTTTGCTGCAGAATCTTT+TGG | + | chr4_2:66153580-66153599 | Msa0616340:intron | 35.0% |
| !! | TGTTTGCTGCAGAATCTTTT+GGG | + | chr4_2:66153581-66153600 | Msa0616340:intron | 35.0% |
| CAAAACAGAAGACTACCAAA+AGG | - | chr4_2:66153709-66153728 | None:intergenic | 35.0% | |
| !! | CTTTGGTGTATTTAAGTTGG+TGG | + | chr4_2:66153739-66153758 | Msa0616340:intron | 35.0% |
| !! | GTATTTAAGTTGGTGGTTAG+TGG | + | chr4_2:66153746-66153765 | Msa0616340:intron | 35.0% |
| TGTATATGTCTTTCTCGCTT+CGG | + | chr4_2:66153809-66153828 | Msa0616340:intron | 35.0% | |
| ACAGACCAATAAGTCATATC+AGG | + | chr4_2:66153915-66153934 | Msa0616340:intron | 35.0% | |
| GAAAGCCTGATATGACTTAT+TGG | - | chr4_2:66153923-66153942 | None:intergenic | 35.0% | |
| AGTCATATCAGGCTTTCAAA+AGG | + | chr4_2:66153926-66153945 | Msa0616340:intron | 35.0% | |
| ! | GATTTTCAGATGGGAATTGT+AGG | + | chr4_2:66154098-66154117 | Msa0616340:intron | 35.0% |
| ! | ACCATATTTGTTGCAGACTT+GGG | - | chr4_2:66154238-66154257 | None:intergenic | 35.0% |
| ! | TACCATATTTGTTGCAGACT+TGG | - | chr4_2:66154239-66154258 | None:intergenic | 35.0% |
| CTGCAACAAATATGGTACAA+TGG | + | chr4_2:66154242-66154261 | Msa0616340:CDS | 35.0% | |
| !! | TGCTTTAAAACTTTAGCCGT+AGG | + | chr4_2:66154422-66154441 | Msa0616340:intron | 35.0% |
| ! | TGTTTTGTATCCAGATAGCT+GGG | - | chr4_2:66154715-66154734 | None:intergenic | 35.0% |
| !! | TTGTTTTGTATCCAGATAGC+TGG | - | chr4_2:66154716-66154735 | None:intergenic | 35.0% |
| ! | GTAAAGTACTCTTCTACGAA+TGG | - | chr4_2:66154965-66154984 | None:intergenic | 35.0% |
| TTTCAACTGTGTCTGACATT+TGG | + | chr4_2:66155368-66155387 | Msa0616340:intron | 35.0% | |
| ATCATCCTATCAAATCTGCT+GGG | + | chr4_2:66155457-66155476 | Msa0616340:CDS | 35.0% | |
| GCAATGTGAGAATGACAATA+GGG | - | chr4_2:66155547-66155566 | None:intergenic | 35.0% | |
| AGCAATGTGAGAATGACAAT+AGG | - | chr4_2:66155548-66155567 | None:intergenic | 35.0% | |
| TACACAAATAGTGCAGAAAC+TGG | - | chr4_2:66155617-66155636 | None:intergenic | 35.0% | |
| AGCACATAATTGACAAAGAG+AGG | + | chr4_2:66155684-66155703 | Msa0616340:CDS | 35.0% | |
| !! | AAATTGTATCATGATGGGCA+AGG | + | chr4_2:66155875-66155894 | Msa0616340:CDS | 35.0% |
| ! | TTGGCAAAGTTTTGCATACA+TGG | + | chr4_2:66155954-66155973 | Msa0616340:CDS | 35.0% |
| ACTTAAAGAAGCTGCATAGA+TGG | + | chr4_2:66155991-66156010 | Msa0616340:exon | 35.0% | |
| ! | GCCTATACTGTATTTTCTTG+AGG | + | chr4_2:66156030-66156049 | Msa0616340:three_prime_UTR | 35.0% |
| TTAGAGAGGAGCAATTAGAG+AGG | + | chr4_2:66150528-66150547 | Msa0616340:five_prime_UTR | 40.0% | |
| TTGGTTTAAACACCAAGCCA+TGG | - | chr4_2:66150624-66150643 | None:intergenic | 40.0% | |
| TGAAGGGACCATACTTTCAA+TGG | - | chr4_2:66150888-66150907 | None:intergenic | 40.0% | |
| GAAAGAACCATGTGCATGAA+GGG | - | chr4_2:66150904-66150923 | None:intergenic | 40.0% | |
| AGAAAGAACCATGTGCATGA+AGG | - | chr4_2:66150905-66150924 | None:intergenic | 40.0% | |
| ATAAAGTGGAGTGGATGCTA+AGG | - | chr4_2:66151011-66151030 | None:intergenic | 40.0% | |
| TTGTCGCTATGTCGAATTTG+TGG | + | chr4_2:66151058-66151077 | Msa0616340:intron | 40.0% | |
| !! | CTCTCATGGTGTTGTTGAAT+AGG | - | chr4_2:66151125-66151144 | None:intergenic | 40.0% |
| ! | CACAAACGGATTCATAACTC+CGG | - | chr4_2:66151762-66151781 | None:intergenic | 40.0% |
| !!! | TGAGATGGTTTTTGGGTTGA+TGG | + | chr4_2:66151974-66151993 | Msa0616340:intron | 40.0% |
| !! | TTGGGTTGATGGTCAATTAC+TGG | + | chr4_2:66151985-66152004 | Msa0616340:intron | 40.0% |
| ATCACCTTTGTTCTTGCAGA+TGG | + | chr4_2:66152034-66152053 | Msa0616340:intron | 40.0% | |
| ! | GGGAGATCAAGGTACTTAAA+GGG | - | chr4_2:66152095-66152114 | None:intergenic | 40.0% |
| ! | AGGGAGATCAAGGTACTTAA+AGG | - | chr4_2:66152096-66152115 | None:intergenic | 40.0% |
| TCCCTGTTGATGCATATTCT+AGG | + | chr4_2:66152111-66152130 | Msa0616340:intron | 40.0% | |
| AGCCTATGTTAGAACAACTC+CGG | + | chr4_2:66152150-66152169 | Msa0616340:intron | 40.0% | |
| !! | TGAAGATGTCGGTTCATGTT+TGG | + | chr4_2:66152276-66152295 | Msa0616340:intron | 40.0% |
| ATGTTTGGAAGAAGGTGATG+CGG | + | chr4_2:66152291-66152310 | Msa0616340:intron | 40.0% | |
| ! | TTTTTATGAGGAGGAGTCAG+AGG | + | chr4_2:66152326-66152345 | Msa0616340:intron | 40.0% |
| AAATTTGGTAAAGTGGGAGG+TGG | + | chr4_2:66152361-66152380 | Msa0616340:intron | 40.0% | |
| AGCGGTTAATTTAAGCCTTC+TGG | + | chr4_2:66152430-66152449 | Msa0616340:intron | 40.0% | |
| ! | ATTTAAGCCTTCTGGCTAAG+TGG | + | chr4_2:66152438-66152457 | Msa0616340:intron | 40.0% |
| ! | GTGGGGATCAGATTTTGAAT+AGG | + | chr4_2:66152510-66152529 | Msa0616340:intron | 40.0% |
| ! | GGATCAGATTTTGAATAGGG+TGG | + | chr4_2:66152514-66152533 | Msa0616340:intron | 40.0% |
| !!! | TGCGTGACTTGTTGGTATTT+TGG | + | chr4_2:66152635-66152654 | Msa0616340:intron | 40.0% |
| ATATGCTAAGGTGAGGGATA+TGG | + | chr4_2:66152665-66152684 | Msa0616340:intron | 40.0% | |
| TATGCTAAGGTGAGGGATAT+GGG | + | chr4_2:66152666-66152685 | Msa0616340:intron | 40.0% | |
| !! | GGAGATGGGTTTTCAATAGA+CGG | + | chr4_2:66152709-66152728 | Msa0616340:intron | 40.0% |
| ! | GTCTCTGTCTTTTCTGTCTT+TGG | + | chr4_2:66152781-66152800 | Msa0616340:intron | 40.0% |
| ! | CTCTGTCTTTTCTGTCTTTG+GGG | + | chr4_2:66152783-66152802 | Msa0616340:intron | 40.0% |
| ! | TCTGTCTTTTCTGTCTTTGG+GGG | + | chr4_2:66152784-66152803 | Msa0616340:intron | 40.0% |
| CTGAGCTAAATCACTTCTAG+TGG | - | chr4_2:66153006-66153025 | None:intergenic | 40.0% | |
| CAGTCCTTCAAATCATCCAT+AGG | - | chr4_2:66153041-66153060 | None:intergenic | 40.0% | |
| TGTGGTATGACATGTTCTAG+TGG | + | chr4_2:66153129-66153148 | Msa0616340:intron | 40.0% | |
| AATCATTTGGGCTATCTGGA+AGG | + | chr4_2:66153262-66153281 | Msa0616340:intron | 40.0% | |
| ! | ATATCATCCACCACCTCTTT+TGG | - | chr4_2:66153331-66153350 | None:intergenic | 40.0% |
| ! | TTTTACATGGAGATGAGGGT+TGG | + | chr4_2:66153358-66153377 | Msa0616340:intron | 40.0% |
| GATGGGCAGGTTTATTTGTT+TGG | + | chr4_2:66153532-66153551 | Msa0616340:intron | 40.0% | |
| GGCAGGTTTATTTGTTTGGT+TGG | + | chr4_2:66153536-66153555 | Msa0616340:intron | 40.0% | |
| !! | GTTTGCTGCAGAATCTTTTG+GGG | + | chr4_2:66153582-66153601 | Msa0616340:intron | 40.0% |
| !!! | ATCTTTTGGGGCTGATTTAG+TGG | + | chr4_2:66153594-66153613 | Msa0616340:intron | 40.0% |
| !!! | TGATGTTTTTTGTCCCTTCC+AGG | + | chr4_2:66153660-66153679 | Msa0616340:intron | 40.0% |
| ATATACAACCACTGCTTAGC+AGG | - | chr4_2:66153796-66153815 | None:intergenic | 40.0% | |
| ! | CTGGATCATCAACTCCTTTT+AGG | - | chr4_2:66154181-66154200 | None:intergenic | 40.0% |
| ACAAATGACTCGTAGAATGC+TGG | - | chr4_2:66154200-66154219 | None:intergenic | 40.0% | |
| ! | CCATATTTGTTGCAGACTTG+GGG | - | chr4_2:66154237-66154256 | None:intergenic | 40.0% |
| TTCTCTTCATACATTCCCTC+CGG | + | chr4_2:66154290-66154309 | Msa0616340:intron | 40.0% | |
| TAGTCATGGTTTCCCAAAAC+TGG | - | chr4_2:66154505-66154524 | None:intergenic | 40.0% | |
| ! | AATTTGGTTTCCCAGCTATC+TGG | + | chr4_2:66154702-66154721 | Msa0616340:intron | 40.0% |
| AAGCACACCTATGATTGGAA+AGG | + | chr4_2:66154995-66155014 | Msa0616340:CDS | 40.0% | |
| TAACCTTCAAGAGTTCTGCA+CGG | - | chr4_2:66155042-66155061 | None:intergenic | 40.0% | |
| ! | TCATTTTGCAATCGTCTCCT+AGG | + | chr4_2:66155209-66155228 | Msa0616340:intron | 40.0% |
| ! | CATTTTGCAATCGTCTCCTA+GGG | + | chr4_2:66155210-66155229 | Msa0616340:intron | 40.0% |
| ! | ATTTTGCAATCGTCTCCTAG+GGG | + | chr4_2:66155211-66155230 | Msa0616340:intron | 40.0% |
| GATTCGAACTTAGTACCTTG+AGG | + | chr4_2:66155234-66155253 | Msa0616340:intron | 40.0% | |
| AGCTTAGCATTGTAACCTCA+AGG | - | chr4_2:66155252-66155271 | None:intergenic | 40.0% | |
| !!! | CTCATACCACCGAACTTTTT+TGG | + | chr4_2:66155270-66155289 | Msa0616340:intron | 40.0% |
| CATGCACATTAGTACTTGAG+AGG | + | chr4_2:66155342-66155361 | Msa0616340:intron | 40.0% | |
| ! | GTAGGAAGTTGATTCAGCTT+TGG | + | chr4_2:66155398-66155417 | Msa0616340:intron | 40.0% |
| CATCATCCTATCAAATCTGC+TGG | + | chr4_2:66155456-66155475 | Msa0616340:CDS | 40.0% | |
| CAATTATGTGCTCCAAGCAA+TGG | - | chr4_2:66155676-66155695 | None:intergenic | 40.0% | |
| !!! | CATTTTTTCACAAGTGGAGG+CGG | + | chr4_2:66155803-66155822 | Msa0616340:CDS | 40.0% |
| TTCAATTCTTTCGGATCCCA+TGG | - | chr4_2:66155857-66155876 | None:intergenic | 40.0% | |
| TGGGACGACAGAAATATTTG+TGG | - | chr4_2:66156064-66156083 | None:intergenic | 40.0% | |
| !! | GTTGGTGATTGGGGAAGAAA+AGG | + | chr4_2:66150779-66150798 | Msa0616340:CDS | 45.0% |
| GGGTGAGGTTTAGAAACAAG+TGG | - | chr4_2:66150964-66150983 | None:intergenic | 45.0% | |
| ! | TTCTAGGGGTGAGAATAAGC+CGG | + | chr4_2:66151240-66151259 | Msa0616340:intron | 45.0% |
| GGTAGTAGACCCTTCTAAGT+CGG | - | chr4_2:66151267-66151286 | None:intergenic | 45.0% | |
| ACTTGACATGTGTCTGGAGA+AGG | - | chr4_2:66151293-66151312 | None:intergenic | 45.0% | |
| !! | CGTTTGACTTGACATGTGTC+TGG | - | chr4_2:66151299-66151318 | None:intergenic | 45.0% |
| CTTAAGTAGGTCGGCCTAAT+GGG | - | chr4_2:66151452-66151471 | None:intergenic | 45.0% | |
| ACTTAAGTAGGTCGGCCTAA+TGG | - | chr4_2:66151453-66151472 | None:intergenic | 45.0% | |
| CGGAGTTATGAATCCGTTTG+TGG | + | chr4_2:66151760-66151779 | Msa0616340:intron | 45.0% | |
| GATTGGGTACTAGCCACAAA+CGG | - | chr4_2:66151776-66151795 | None:intergenic | 45.0% | |
| AAAGGTAGGAACTGGGTGTA+TGG | + | chr4_2:66151806-66151825 | Msa0616340:intron | 45.0% | |
| AAGGTAGGAACTGGGTGTAT+GGG | + | chr4_2:66151807-66151826 | Msa0616340:intron | 45.0% | |
| TTCGCATCTGTGGACTTTGA+AGG | + | chr4_2:66151935-66151954 | Msa0616340:intron | 45.0% | |
| CAAGCCATCTGCAAGAACAA+AGG | - | chr4_2:66152041-66152060 | None:intergenic | 45.0% | |
| ATGCATCAACAGGGAGATCA+AGG | - | chr4_2:66152106-66152125 | None:intergenic | 45.0% | |
| !! | ATTCTAGGATTCTCACCACG+TGG | + | chr4_2:66152126-66152145 | Msa0616340:intron | 45.0% |
| !! | TTCTAGGATTCTCACCACGT+GGG | + | chr4_2:66152127-66152146 | Msa0616340:intron | 45.0% |
| CACCGGAGTTGTTCTAACAT+AGG | - | chr4_2:66152155-66152174 | None:intergenic | 45.0% | |
| CTATGTTAGAACAACTCCGG+TGG | + | chr4_2:66152153-66152172 | Msa0616340:intron | 45.0% | |
| ! | GGGTACAAGCGCATTAGTTT+CGG | + | chr4_2:66152191-66152210 | Msa0616340:intron | 45.0% |
| ! | TACAAGCGCATTAGTTTCGG+TGG | + | chr4_2:66152194-66152213 | Msa0616340:intron | 45.0% |
| ! | GTCGGTTCATGTTTGGAAGA+AGG | + | chr4_2:66152283-66152302 | Msa0616340:intron | 45.0% |
| ! | CAGAGGGAGTTTTTATGAGG+AGG | + | chr4_2:66152317-66152336 | Msa0616340:intron | 45.0% |
| ATCTAAAAGAAATGGGGGGC+TGG | + | chr4_2:66152391-66152410 | Msa0616340:intron | 45.0% | |
| TCTAAAAGAAATGGGGGGCT+GGG | + | chr4_2:66152392-66152411 | Msa0616340:intron | 45.0% | |
| ! | AAAACGAGGTTCGCTTTGGA+AGG | + | chr4_2:66152477-66152496 | Msa0616340:intron | 45.0% |
| TTTGGAAGGTGGCTTAGTTG+TGG | + | chr4_2:66152491-66152510 | Msa0616340:intron | 45.0% | |
| TTGGAAGGTGGCTTAGTTGT+GGG | + | chr4_2:66152492-66152511 | Msa0616340:intron | 45.0% | |
| ACGCAAAGCTCTCACAAAGA+GGG | - | chr4_2:66152620-66152639 | None:intergenic | 45.0% | |
| ATGCTAAGGTGAGGGATATG+GGG | + | chr4_2:66152667-66152686 | Msa0616340:intron | 45.0% | |
| !! | GATGGGTTTTCAATAGACGG+CGG | + | chr4_2:66152712-66152731 | Msa0616340:intron | 45.0% |
| ACAGAGACAATAGACCCACT+AGG | - | chr4_2:66152769-66152788 | None:intergenic | 45.0% | |
| GTACAAGAGTCACCATCATC+AGG | - | chr4_2:66152831-66152850 | None:intergenic | 45.0% | |
| ! | AGAAGTGATTTAGCTCAGCG+TGG | + | chr4_2:66153008-66153027 | Msa0616340:intron | 45.0% |
| ! | GAAGTGATTTAGCTCAGCGT+GGG | + | chr4_2:66153009-66153028 | Msa0616340:intron | 45.0% |
| ! | AAGTGATTTAGCTCAGCGTG+GGG | + | chr4_2:66153010-66153029 | Msa0616340:intron | 45.0% |
| TATGACATGTTCTAGTGGCC+TGG | + | chr4_2:66153134-66153153 | Msa0616340:intron | 45.0% | |
| CGTGAAGAAGGAACCAAAAG+AGG | + | chr4_2:66153315-66153334 | Msa0616340:intron | 45.0% | |
| GAAGAAGGAACCAAAAGAGG+TGG | + | chr4_2:66153318-66153337 | Msa0616340:intron | 45.0% | |
| TGGTGATTGTATTCGGTTCC+TGG | + | chr4_2:66153456-66153475 | Msa0616340:intron | 45.0% | |
| TAAATCAAGGCAGAGCTACC+AGG | - | chr4_2:66153477-66153496 | None:intergenic | 45.0% | |
| ! | TAGCTCTGCCTTGATTTAGC+AGG | + | chr4_2:66153479-66153498 | Msa0616340:intron | 45.0% |
| TCTGCCTTGATTTAGCAGGT+GGG | + | chr4_2:66153483-66153502 | Msa0616340:intron | 45.0% | |
| TTGAGCTCATGTAGCTGGTT+TGG | + | chr4_2:66153510-66153529 | Msa0616340:intron | 45.0% | |
| !! | CTCATGTAGCTGGTTTGGAT+GGG | + | chr4_2:66153515-66153534 | Msa0616340:intron | 45.0% |
| !!! | TTTTTTGTCCCTTCCAGGTC+TGG | + | chr4_2:66153665-66153684 | Msa0616340:intron | 45.0% |
| ! | TCGTGTGTTTAGGCTCCTTT+TGG | + | chr4_2:66153691-66153710 | Msa0616340:intron | 45.0% |
| ATGAGGAGGGAGTTACAACT+TGG | - | chr4_2:66154070-66154089 | None:intergenic | 45.0% | |
| CCCCAAGTCTGCAACAAATA+TGG | + | chr4_2:66154234-66154253 | Msa0616340:CDS | 45.0% | |
| TTGGGAAACCATGACTACAG+AGG | + | chr4_2:66154508-66154527 | Msa0616340:CDS | 45.0% | |
| GGCGATGTTGAAGCACAATT+AGG | + | chr4_2:66154529-66154548 | Msa0616340:CDS | 45.0% | |
| !! | GAAGAGTACTTTACGGATCC+AGG | + | chr4_2:66154971-66154990 | Msa0616340:CDS | 45.0% |
| CAATCATAGGTGTGCTTTCC+TGG | - | chr4_2:66154992-66155011 | None:intergenic | 45.0% | |
| ! | CAGGAAAGCACACCTATGAT+TGG | + | chr4_2:66154990-66155009 | Msa0616340:CDS | 45.0% |
| AAGCACGCCTTTCCAATCAT+AGG | - | chr4_2:66155005-66155024 | None:intergenic | 45.0% | |
| TCTGCACGGTAAGATTCAAG+AGG | - | chr4_2:66155028-66155047 | None:intergenic | 45.0% | |
| TTACCGTGCAGAACTCTTGA+AGG | + | chr4_2:66155036-66155055 | Msa0616340:CDS | 45.0% | |
| ! | TTTTGCAATCGTCTCCTAGG+GGG | + | chr4_2:66155212-66155231 | Msa0616340:intron | 45.0% |
| TACTAAGTTCGAATCCCCCT+AGG | - | chr4_2:66155229-66155248 | None:intergenic | 45.0% | |
| ! | TTCAGCTTTGGTGCAATCCA+CGG | + | chr4_2:66155410-66155429 | Msa0616340:CDS | 45.0% |
| ! | CACTATCTTCCATTTTGCCG+TGG | - | chr4_2:66155430-66155449 | None:intergenic | 45.0% |
| CACGGCAAAATGGAAGATAG+TGG | + | chr4_2:66155428-66155447 | Msa0616340:CDS | 45.0% | |
| GCAGCTTCTTCCCATCTTAA+AGG | + | chr4_2:66155509-66155528 | Msa0616340:CDS | 45.0% | |
| CAATGGACATGACCATTGCT+TGG | + | chr4_2:66155661-66155680 | Msa0616340:CDS | 45.0% | |
| !!! | TATTCTTTTTTTTTTTTTTT+TGG | + | chr4_2:66154902-66154921 | Msa0616340:intron | 5.0% |
| !! | CTTTCAAGCGCTGAAAGCCA+TGG | + | chr4_2:66150604-66150623 | Msa0616340:exon | 50.0% |
| CCTTGGAAGCTTCTCAGCTA+TGG | - | chr4_2:66150711-66150730 | None:intergenic | 50.0% | |
| CCATAGCTGAGAAGCTTCCA+AGG | + | chr4_2:66150708-66150727 | Msa0616340:CDS | 50.0% | |
| TCAATCTCTTGTCGCCCATC+AGG | + | chr4_2:66150811-66150830 | Msa0616340:CDS | 50.0% | |
| GTATGGTCCCTTCATGCACA+TGG | + | chr4_2:66150894-66150913 | Msa0616340:intron | 50.0% | |
| TGCTAAGGTAGTTGGCCATG+TGG | - | chr4_2:66150996-66151015 | None:intergenic | 50.0% | |
| GGAGTGGATGCTAAGGTAGT+TGG | - | chr4_2:66151004-66151023 | None:intergenic | 50.0% | |
| ! | ATAAGCCGGACCGACTTAGA+AGG | + | chr4_2:66151254-66151273 | Msa0616340:intron | 50.0% |
| ! | TAAGCCGGACCGACTTAGAA+GGG | + | chr4_2:66151255-66151274 | Msa0616340:intron | 50.0% |
| TAGACCCTTCTAAGTCGGTC+CGG | - | chr4_2:66151262-66151281 | None:intergenic | 50.0% | |
| ACATGTGTCTGGAGAAGGCT+AGG | - | chr4_2:66151288-66151307 | None:intergenic | 50.0% | |
| AGGTAGGAACTGGGTGTATG+GGG | + | chr4_2:66151808-66151827 | Msa0616340:intron | 50.0% | |
| ! | TGAAAAGGCGTAAGACTCGG+TGG | + | chr4_2:66151903-66151922 | Msa0616340:intron | 50.0% |
| GATTGGGGAATTCGCATCTG+TGG | + | chr4_2:66151925-66151944 | Msa0616340:intron | 50.0% | |
| TTCTAACATAGGCTCCCACG+TGG | - | chr4_2:66152144-66152163 | None:intergenic | 50.0% | |
| AACAACTCCGGTGGAGACTT+GGG | + | chr4_2:66152162-66152181 | Msa0616340:intron | 50.0% | |
| ! | AGCGCATTAGTTTCGGTGGT+CGG | + | chr4_2:66152198-66152217 | Msa0616340:intron | 50.0% |
| AGAAGGTGATGCGGATTCAG+AGG | + | chr4_2:66152300-66152319 | Msa0616340:intron | 50.0% | |
| GAAGGTGATGCGGATTCAGA+GGG | + | chr4_2:66152301-66152320 | Msa0616340:intron | 50.0% | |
| TTATGAGGAGGAGTCAGAGG+CGG | + | chr4_2:66152329-66152348 | Msa0616340:intron | 50.0% | |
| CTAAAAGAAATGGGGGGCTG+GGG | + | chr4_2:66152393-66152412 | Msa0616340:intron | 50.0% | |
| TAAAAGAAATGGGGGGCTGG+GGG | + | chr4_2:66152394-66152413 | Msa0616340:intron | 50.0% | |
| TCCATCTCCACTTAGCCAGA+AGG | - | chr4_2:66152448-66152467 | None:intergenic | 50.0% | |
| ! | TTCTGGCTAAGTGGAGATGG+AGG | + | chr4_2:66152447-66152466 | Msa0616340:intron | 50.0% |
| ATGGAGGATCCTGCAAAACG+AGG | + | chr4_2:66152463-66152482 | Msa0616340:intron | 50.0% | |
| ! | CAAAGCGAACCTCGTTTTGC+AGG | - | chr4_2:66152475-66152494 | None:intergenic | 50.0% |
| CTGCAAAACGAGGTTCGCTT+TGG | + | chr4_2:66152473-66152492 | Msa0616340:intron | 50.0% | |
| TGGAAGGTGGCTTAGTTGTG+GGG | + | chr4_2:66152493-66152512 | Msa0616340:intron | 50.0% | |
| CACGCAAAGCTCTCACAAAG+AGG | - | chr4_2:66152621-66152640 | None:intergenic | 50.0% | |
| ! | GAGAGCTTTGCGTGACTTGT+TGG | + | chr4_2:66152627-66152646 | Msa0616340:intron | 50.0% |
| TGCTAAGGTGAGGGATATGG+GGG | + | chr4_2:66152668-66152687 | Msa0616340:intron | 50.0% | |
| AGGGATATGGGGGATATGGA+AGG | + | chr4_2:66152678-66152697 | Msa0616340:intron | 50.0% | |
| GATATGGGGGATATGGAAGG+TGG | + | chr4_2:66152681-66152700 | Msa0616340:intron | 50.0% | |
| GGGATATGGAAGGTGGAGAT+TGG | + | chr4_2:66152688-66152707 | Msa0616340:intron | 50.0% | |
| TGGAAGGTGGAGATTGGAGA+TGG | + | chr4_2:66152694-66152713 | Msa0616340:intron | 50.0% | |
| GGAAGGTGGAGATTGGAGAT+GGG | + | chr4_2:66152695-66152714 | Msa0616340:intron | 50.0% | |
| !! | GTCTTTTCTGTCTTTGGGGG+AGG | + | chr4_2:66152787-66152806 | Msa0616340:intron | 50.0% |
| ! | TGCTGAGGTGTTCACGAATG+AGG | + | chr4_2:66152875-66152894 | Msa0616340:intron | 50.0% |
| TCAGCGTGGGGTTATTCCTA+TGG | + | chr4_2:66153022-66153041 | Msa0616340:intron | 50.0% | |
| CGTGCTTTGTGCTGCAAATC+TGG | + | chr4_2:66153061-66153080 | Msa0616340:intron | 50.0% | |
| ! | GTGATTTTGCCTCGCAAGTG+TGG | + | chr4_2:66153111-66153130 | Msa0616340:intron | 50.0% |
| CATGTCATACCACACTTGCG+AGG | - | chr4_2:66153123-66153142 | None:intergenic | 50.0% | |
| CATGTTCTAGTGGCCTGGTT+TGG | + | chr4_2:66153139-66153158 | Msa0616340:intron | 50.0% | |
| TTTGGGCTATCTGGAAGGCT+AGG | + | chr4_2:66153267-66153286 | Msa0616340:intron | 50.0% | |
| GAAGGAACCAAAAGAGGTGG+TGG | + | chr4_2:66153321-66153340 | Msa0616340:intron | 50.0% | |
| CTCTGCCTTGATTTAGCAGG+TGG | + | chr4_2:66153482-66153501 | Msa0616340:intron | 50.0% | |
| GCTACCCACCTGCTAAATCA+AGG | - | chr4_2:66153490-66153509 | None:intergenic | 50.0% | |
| GTAGCTTGAGCTCATGTAGC+TGG | + | chr4_2:66153505-66153524 | Msa0616340:intron | 50.0% | |
| !! | GCTCATGTAGCTGGTTTGGA+TGG | + | chr4_2:66153514-66153533 | Msa0616340:intron | 50.0% |
| ! | GTTTGGTTGGTGTCTGGTAG+TGG | + | chr4_2:66153549-66153568 | Msa0616340:intron | 50.0% |
| AAACACACGACAACCAGACC+TGG | - | chr4_2:66153681-66153700 | None:intergenic | 50.0% | |
| GGTCTGGTTGTCGTGTGTTT+AGG | + | chr4_2:66153681-66153700 | Msa0616340:intron | 50.0% | |
| TGGTTGTTCCTGCTAAGCAG+TGG | + | chr4_2:66153785-66153804 | Msa0616340:intron | 50.0% | |
| ! | TCGGAGCATTTCTTGTGAGC+TGG | + | chr4_2:66153828-66153847 | Msa0616340:intron | 50.0% |
| CAACATCGCCTCTGTAGTCA+TGG | - | chr4_2:66154519-66154538 | None:intergenic | 50.0% | |
| TGGTGCAATCCACGGCAAAA+TGG | + | chr4_2:66155418-66155437 | Msa0616340:CDS | 50.0% | |
| TGAGGCCCAGCAGATTTGAT+AGG | - | chr4_2:66155465-66155484 | None:intergenic | 50.0% | |
| ATCAAATCTGCTGGGCCTCA+TGG | + | chr4_2:66155465-66155484 | Msa0616340:CDS | 50.0% | |
| AAGCTGCTCCACAAGCTCTT+GGG | - | chr4_2:66155496-66155515 | None:intergenic | 50.0% | |
| !! | AAGCGCTGAAAGCCATGGCT+TGG | + | chr4_2:66150609-66150628 | Msa0616340:exon | 55.0% |
| ATGTGGCACACATGTGGGTG+AGG | - | chr4_2:66150979-66150998 | None:intergenic | 55.0% | |
| TCACCCACATGTGTGCCACA+TGG | + | chr4_2:66150978-66150997 | Msa0616340:intron | 55.0% | |
| TGGCCATGTGGCACACATGT+GGG | - | chr4_2:66150984-66151003 | None:intergenic | 55.0% | |
| TTGGCCATGTGGCACACATG+TGG | - | chr4_2:66150985-66151004 | None:intergenic | 55.0% | |
| GAACTGGGTGTATGGGGTGA+TGG | + | chr4_2:66151814-66151833 | Msa0616340:intron | 55.0% | |
| !! | TGGGGTGATGGCGGTAAATG+AGG | + | chr4_2:66151826-66151845 | Msa0616340:intron | 55.0% |
| !! | AGGCGTAAGACTCGGTGGAT+TGG | + | chr4_2:66151908-66151927 | Msa0616340:intron | 55.0% |
| !! | GGCGTAAGACTCGGTGGATT+GGG | + | chr4_2:66151909-66151928 | Msa0616340:intron | 55.0% |
| !! | GCGTAAGACTCGGTGGATTG+GGG | + | chr4_2:66151910-66151929 | Msa0616340:intron | 55.0% |
| GAACAACTCCGGTGGAGACT+TGG | + | chr4_2:66152161-66152180 | Msa0616340:intron | 55.0% | |
| ACAACTCCGGTGGAGACTTG+GGG | + | chr4_2:66152163-66152182 | Msa0616340:intron | 55.0% | |
| ! | GCCTTCTGGCTAAGTGGAGA+TGG | + | chr4_2:66152444-66152463 | Msa0616340:intron | 55.0% |
| !! | ACGAGGTTCGCTTTGGAAGG+TGG | + | chr4_2:66152480-66152499 | Msa0616340:intron | 55.0% |
| GGTGAGGGATATGGGGGATA+TGG | + | chr4_2:66152674-66152693 | Msa0616340:intron | 55.0% | |
| ! | GGGTTTTCAATAGACGGCGG+AGG | + | chr4_2:66152715-66152734 | Msa0616340:intron | 55.0% |
| ! | TCTGTCTTTGGGGGAGGACA+AGG | + | chr4_2:66152793-66152812 | Msa0616340:intron | 55.0% |
| ! | CTGTCTTTGGGGGAGGACAA+GGG | + | chr4_2:66152794-66152813 | Msa0616340:intron | 55.0% |
| ! | TGTCTTTGGGGGAGGACAAG+GGG | + | chr4_2:66152795-66152814 | Msa0616340:intron | 55.0% |
| ! | GGGATTTGGGGTCCTGATGA+TGG | + | chr4_2:66152816-66152835 | Msa0616340:intron | 55.0% |
| GGAAGGCTAGGAACGTAACG+AGG | + | chr4_2:66153279-66153298 | Msa0616340:intron | 55.0% | |
| !! | TGTAGCTGGTTTGGATGGGC+AGG | + | chr4_2:66153519-66153538 | Msa0616340:intron | 55.0% |
| CACGACAACCAGACCTGGAA+GGG | - | chr4_2:66153676-66153695 | None:intergenic | 55.0% | |
| ACACGACAACCAGACCTGGA+AGG | - | chr4_2:66153677-66153696 | None:intergenic | 55.0% | |
| GAAGCTGCTCCACAAGCTCT+TGG | - | chr4_2:66155497-66155516 | None:intergenic | 55.0% | |
| CACAAGTGGAGGCGGATCAA+AGG | + | chr4_2:66155811-66155830 | Msa0616340:CDS | 55.0% | |
| ! | TGGAGGCGGATCAAAGGCAT+GGG | + | chr4_2:66155817-66155836 | Msa0616340:CDS | 55.0% |
| ! | GTGTTGGCGGCGAGACTAAC+CGG | + | chr4_2:66151740-66151759 | Msa0616340:intron | 60.0% |
| ! | CTGGGTGTATGGGGTGATGG+CGG | + | chr4_2:66151817-66151836 | Msa0616340:intron | 60.0% |
| GGGGGTGAGAGATGTGAGAG+CGG | + | chr4_2:66152412-66152431 | Msa0616340:intron | 60.0% | |
| GAGGGTCGTTGCTGATCCAC+CGG | - | chr4_2:66152602-66152621 | None:intergenic | 60.0% | |
| GACGGCGGAGGTTGTTTGAG+TGG | + | chr4_2:66152727-66152746 | Msa0616340:intron | 60.0% | |
| ! | GTCTTTGGGGGAGGACAAGG+GGG | + | chr4_2:66152796-66152815 | Msa0616340:intron | 60.0% |
| GGGGAGGACAAGGGGGATTT+GGG | + | chr4_2:66152803-66152822 | Msa0616340:intron | 60.0% | |
| GGGAGGACAAGGGGGATTTG+GGG | + | chr4_2:66152804-66152823 | Msa0616340:intron | 60.0% | |
| GTGGAGGCGGATCAAAGGCA+TGG | + | chr4_2:66155816-66155835 | Msa0616340:CDS | 60.0% | |
| ! | GGAGGCGGATCAAAGGCATG+GGG | + | chr4_2:66155818-66155837 | Msa0616340:CDS | 60.0% |
| ! | GAGGCGGATCAAAGGCATGG+GGG | + | chr4_2:66155819-66155838 | Msa0616340:CDS | 60.0% |
| ! | AGGCGGATCAAAGGCATGGG+GGG | + | chr4_2:66155820-66155839 | Msa0616340:CDS | 60.0% |
| GGGGGGTGACATCAAGCCAT+GGG | + | chr4_2:66155838-66155857 | Msa0616340:CDS | 60.0% | |
| TCCGGTGGAGACTTGGGGCT+TGG | + | chr4_2:66152168-66152187 | Msa0616340:intron | 65.0% | |
| CCCAAGCCCCAAGTCTCCAC+CGG | - | chr4_2:66152172-66152191 | None:intergenic | 65.0% | |
| CCGGTGGAGACTTGGGGCTT+GGG | + | chr4_2:66152169-66152188 | Msa0616340:intron | 65.0% | |
| CGGTGGAGACTTGGGGCTTG+GGG | + | chr4_2:66152170-66152189 | Msa0616340:intron | 65.0% | |
| GGTGGAGACTTGGGGCTTGG+GGG | + | chr4_2:66152171-66152190 | Msa0616340:intron | 65.0% | |
| GGGGGAGGACAAGGGGGATT+TGG | + | chr4_2:66152802-66152821 | Msa0616340:intron | 65.0% | |
| ! | GGCGGATCAAAGGCATGGGG+GGG | + | chr4_2:66155821-66155840 | Msa0616340:CDS | 65.0% |
| GGGGGGGTGACATCAAGCCA+TGG | + | chr4_2:66155837-66155856 | Msa0616340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66150492 | 66156213 | 66150492 | ID=Msa0616340;Name=Msa0616340 |
| chr4_2 | mRNA | 66150492 | 66156213 | 66150492 | ID=Msa0616340-mRNA-1;Parent=Msa0616340;Name=Msa0616340-mRNA-1;_AED=0.31;_eAED=0.31;_QI=131|1|1|1|1|1|7|204|337 |
| chr4_2 | exon | 66150492 | 66150832 | 66150492 | ID=Msa0616340-mRNA-1:exon:18800;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66154107 | 66154263 | 66154107 | ID=Msa0616340-mRNA-1:exon:18801;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66154506 | 66154613 | 66154506 | ID=Msa0616340-mRNA-1:exon:18802;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66154930 | 66155057 | 66154930 | ID=Msa0616340-mRNA-1:exon:18803;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66155402 | 66155530 | 66155402 | ID=Msa0616340-mRNA-1:exon:18804;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66155638 | 66155705 | 66155638 | ID=Msa0616340-mRNA-1:exon:18805;Parent=Msa0616340-mRNA-1 |
| chr4_2 | exon | 66155796 | 66156213 | 66155796 | ID=Msa0616340-mRNA-1:exon:18806;Parent=Msa0616340-mRNA-1 |
| chr4_2 | five_prime_UTR | 66150492 | 66150622 | 66150492 | ID=Msa0616340-mRNA-1:five_prime_utr;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66150623 | 66150832 | 66150623 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66154107 | 66154263 | 66154107 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66154506 | 66154613 | 66154506 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66154930 | 66155057 | 66154930 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66155402 | 66155530 | 66155402 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66155638 | 66155705 | 66155638 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | CDS | 66155796 | 66156009 | 66155796 | ID=Msa0616340-mRNA-1:cds;Parent=Msa0616340-mRNA-1 |
| chr4_2 | three_prime_UTR | 66156010 | 66156213 | 66156010 | ID=Msa0616340-mRNA-1:three_prime_utr;Parent=Msa0616340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
