AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686740 MtrunA17_Chr4g0036901 90.728 302 16 2 1 290 1 302 2.24e-167 497
Msa0686740 MtrunA17_Chr4g0036901 98.718 78 1 0 302 379 1057 1134 9.75e-47 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686740 AT4G34830.1 58.228 79 30 2 302 379 1013 1089 1.51e-18 88.2

Find 84 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCTCGGTTTGTATTTA+AGG 0.088338 4_4:-51386918 Msa0686740:CDS
GTGTTATCCCTTTGAAATTC+TGG 0.176987 4_4:+51385773 None:intergenic
GATAACACCCTGAATGAAAT+TGG 0.200817 4_4:-51385758 Msa0686740:CDS
TTACGTTATCTGCTGTTTCT+TGG 0.204596 4_4:-51386856 Msa0686740:CDS
ATAGTCTGGGCTTGATAAAA+TGG 0.263170 4_4:-51383964 Msa0686740:CDS
GTCATTGATAACCAGATTCT+TGG 0.282238 4_4:-51385800 Msa0686740:CDS
TTAACTTCCCAATTTCATTC+AGG 0.282563 4_4:+51385750 None:intergenic
CAGTTGCAGCATTGTTTAGA+AGG 0.304681 4_4:-51384036 Msa0686740:CDS
TCCTCCTTCTTCTTCATCCA+TGG 0.325787 4_4:-51387122 Msa0686740:exon
CAGTTCGAATGTTTCGTTGC+TGG 0.345934 4_4:+51383855 None:intergenic
CGAAATAAACGGAACAAGTT+AGG 0.346560 4_4:-51386956 Msa0686740:CDS
ATCTAACGTCCGAGTCTTCA+TGG 0.360484 4_4:+51385640 None:intergenic
GACTTTCCAATCAAATTCAT+TGG 0.364994 4_4:-51385519 Msa0686740:CDS
TAGATGCCAATGAATTTGAT+TGG 0.382010 4_4:+51385513 None:intergenic
GAAACTTAGAATAAATAGTC+TGG 0.387155 4_4:-51383978 Msa0686740:CDS
ATTACTTCCTTGTGGTGATA+AGG 0.396728 4_4:+51385835 None:intergenic
TCGGCGGTTTCCAAGGTGAT+TGG 0.399821 4_4:-51383916 Msa0686740:CDS
CCAAAGCTTGCATCGCCATT+CGG 0.405445 4_4:-51383935 Msa0686740:CDS
CCGAATGGCGATGCAAGCTT+TGG 0.405586 4_4:+51383935 None:intergenic
AACGGTTCCTTTAGTGTCAA+TGG 0.420611 4_4:-51385581 Msa0686740:CDS
TTTGCAATCTTCTATGGTGC+AGG 0.431615 4_4:-51385669 Msa0686740:CDS
ATTCTGGAAAACCAAGAATC+TGG 0.434241 4_4:+51385789 None:intergenic
GCTATAAAACTTCAAGCATC+AGG 0.436278 4_4:-51384444 Msa0686740:intron
ACAACTAGTTTCTCTACCTC+TGG 0.437895 4_4:-51387218 Msa0686740:five_prime_UTR
AAACTAGTTGTTGGTGATGA+TGG 0.443137 4_4:+51387230 None:intergenic
TAACTTCCCAATTTCATTCA+GGG 0.445079 4_4:+51385751 None:intergenic
TAACAGTTCTGAGGTATTAG+AGG 0.450423 4_4:-51385558 Msa0686740:CDS
TCTTCCCGTACAAGTTTCCT+TGG 0.454684 4_4:-51387037 Msa0686740:CDS
CAGCAACGAAACATTCGAAC+TGG 0.460856 4_4:-51383854 Msa0686740:CDS
AAAATTGAAGGTGGACCTCT+TGG 0.462722 4_4:+51385690 None:intergenic
TTCTTCGTCTTCATTCTCCT+CGG 0.463909 4_4:-51386931 Msa0686740:CDS
ATTGGAGCTCATCCCAATTA+CGG 0.467414 4_4:-51383898 Msa0686740:CDS
TCGCCATTCGGCGGTTTCCA+AGG 0.477436 4_4:-51383923 Msa0686740:CDS
AAGGCTTCATATTCCTTACC+AGG 0.478506 4_4:-51384017 Msa0686740:CDS
GTTCTTGACTCTAGTGTCAA+TGG 0.482807 4_4:-51385605 Msa0686740:CDS
CGCTTCGTTCTCGAAATAAA+CGG 0.488086 4_4:-51386967 Msa0686740:CDS
AGGAAGTAATGTTGCGAACC+AGG 0.495071 4_4:-51385822 Msa0686740:CDS
TGTGGTGGCTCACAGATTAA+CGG 0.495518 4_4:-51387292 Msa0686740:five_prime_UTR
TATAGCAATTTCTTGAAGCT+AGG 0.500923 4_4:+51384461 None:intergenic
GTGAAGAATGAAGCATTAGC+AGG 0.506433 4_4:+51387156 None:intergenic
TCGAACTGGAAATCTATCTC+TGG 0.507953 4_4:-51383840 Msa0686740:CDS
TGCAACCAAGGAAACTTGTA+CGG 0.508630 4_4:+51387032 None:intergenic
ATAACACCCTGAATGAAATT+GGG 0.510138 4_4:-51385757 Msa0686740:CDS
TACCAGGGTAGTGAATCAAA+TGG 0.515025 4_4:-51384001 Msa0686740:CDS
TAAACAATGCTGCAACTGCT+TGG 0.520990 4_4:+51384041 None:intergenic
GAGCATAACACTTCTTCTGT+TGG 0.526329 4_4:-51385398 Msa0686740:CDS
ACCAGGGTAGTGAATCAAAT+GGG 0.526877 4_4:-51384000 Msa0686740:CDS
TTTGATTCACTACCCTGGTA+AGG 0.528565 4_4:+51384004 None:intergenic
GAGGTAGAGAAACTAGTTGT+TGG 0.528937 4_4:+51387221 None:intergenic
TGAGACTGTGGTTGCAACCA+AGG 0.530551 4_4:+51387020 None:intergenic
ACAGAAGAAGTGTTATGCTC+AGG 0.532552 4_4:+51385401 None:intergenic
GAAGAGTTTGTTAACATCCA+TGG 0.533521 4_4:+51387105 None:intergenic
ATGTAGGTGGTTTGAGACTG+TGG 0.536856 4_4:+51387008 None:intergenic
CGGGAAGAAGAAACAAATAG+AGG 0.540032 4_4:+51387052 None:intergenic
AAACTTAGAATAAATAGTCT+GGG 0.544570 4_4:-51383977 Msa0686740:CDS
GACTCTAGTGTCAATGGTAA+CGG 0.545279 4_4:-51385599 Msa0686740:CDS
ACTGTTACCATTGACACTAA+AGG 0.558914 4_4:+51385574 None:intergenic
TCTTGAGTTGCCTTTGAGTG+AGG 0.559441 4_4:-51385429 Msa0686740:CDS
AAGCTTGCATCGCCATTCGG+CGG 0.561299 4_4:-51383932 Msa0686740:CDS
AAAGCACTTGATACAATCAA+TGG 0.566195 4_4:-51385368 Msa0686740:CDS
ACATCCATGGATGAAGAAGA+AGG 0.578988 4_4:+51387118 None:intergenic
TCCCATTTGATTCACTACCC+TGG 0.579357 4_4:+51383999 None:intergenic
TTCGCAACATTACTTCCTTG+TGG 0.580658 4_4:+51385827 None:intergenic
AGCTCATCCCAATTACGGCT+CGG 0.582118 4_4:-51383893 Msa0686740:CDS
GAAGCTGAAGCTGAAGATGT+AGG 0.584319 4_4:+51386992 None:intergenic
AGGAAACAGCCATGAAGACT+CGG 0.592255 4_4:-51385649 Msa0686740:CDS
TCAGGTTTGACCTCACTCAA+AGG 0.594372 4_4:+51385419 None:intergenic
GTTAAATGATCTCAACGGAA+AGG 0.595014 4_4:-51385732 Msa0686740:CDS
AGGCTTCATATTCCTTACCA+GGG 0.616389 4_4:-51384016 Msa0686740:CDS
TCACCTTGGAAACCGCCGAA+TGG 0.626001 4_4:+51383920 None:intergenic
GAATCTGGTTATCAATGACC+TGG 0.628382 4_4:+51385804 None:intergenic
GCAACCAAGGAAACTTGTAC+GGG 0.629842 4_4:+51387033 None:intergenic
GGGATGAGCTCCAATCACCT+TGG 0.632966 4_4:+51383906 None:intergenic
GGGAAGTTAAATGATCTCAA+CGG 0.638939 4_4:-51385737 Msa0686740:CDS
TGAGGAAATGACTTTACAAG+TGG 0.640048 4_4:-51385480 Msa0686740:CDS
AAGTTAATCTGAGAGAACGT+TGG 0.644868 4_4:+51387077 None:intergenic
TGTCAATGGTAACAGTTCTG+AGG 0.655177 4_4:-51385567 Msa0686740:CDS
AAATATGCCTTATCACCACA+AGG 0.670513 4_4:-51385842 Msa0686740:CDS
GCAGCCTTAAATACAAACCG+AGG 0.674078 4_4:+51386914 None:intergenic
AGCAAGTTGGAGTGAATCTG+TGG 0.678961 4_4:-51387310 None:intergenic
GCTGAAGCTGAAGATGTAGG+TGG 0.702665 4_4:+51386995 None:intergenic
AAGTTGGAGTGAATCTGTGG+TGG 0.722284 4_4:-51387307 None:intergenic
GAGACTTGAATTGAAACCAG+AGG 0.745670 4_4:+51387202 None:intergenic
TCCATGGATGAAGAAGAAGG+AGG 0.762805 4_4:+51387121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTTCAATAAGAT+AGG - chr4_4:51384637-51384656 Msa0686740:intron 10.0%
!! TTTCTAATATTATATTCCAA+CGG + chr4_4:51386122-51386141 None:intergenic 15.0%
!!! TTTTTTTCAATAAGATAGGA+AGG - chr4_4:51384641-51384660 Msa0686740:intron 20.0%
!!! AGCTAGTAAAAATAAGTTTT+AGG + chr4_4:51384824-51384843 None:intergenic 20.0%
!! ATACATATCAAATGACAAAA+GGG + chr4_4:51384906-51384925 None:intergenic 20.0%
!! TATACATATCAAATGACAAA+AGG + chr4_4:51384907-51384926 None:intergenic 20.0%
!!! GATCAATTTTTTCTTTAGTA+TGG + chr4_4:51385791-51385810 None:intergenic 20.0%
!! AGAAAAAAAAAACAAAAGCT+TGG + chr4_4:51386421-51386440 None:intergenic 20.0%
!! GTTATTTACTTGTCAAAATT+TGG + chr4_4:51386525-51386544 None:intergenic 20.0%
!!! ATCAGGTAAGAATTTTATTT+GGG - chr4_4:51386706-51386725 Msa0686740:intron 20.0%
!! AAACTTAGAATAAATAGTCT+GGG - chr4_4:51387156-51387175 Msa0686740:five_prime_UTR 20.0%
!!! TCATTTTTTAGAATTCAGTG+CGG - chr4_4:51384375-51384394 Msa0686740:intron 25.0%
!!! TTAAAGTTAGTTTTCCGTTA+TGG - chr4_4:51384424-51384443 Msa0686740:intron 25.0%
! ACAGAAAAATATCACCATAA+CGG + chr4_4:51384441-51384460 None:intergenic 25.0%
! TACATATCAAATGACAAAAG+GGG + chr4_4:51384905-51384924 None:intergenic 25.0%
! TTGATTGAATTTGTAGTGTT+TGG + chr4_4:51384953-51384972 None:intergenic 25.0%
!!! AGTTTTTTTTACTGGCTTAT+AGG + chr4_4:51385015-51385034 None:intergenic 25.0%
!! GTTACTAAACAGATGTATTT+TGG - chr4_4:51385060-51385079 Msa0686740:intron 25.0%
! TAGAAGATTGCAAAAATTGA+AGG + chr4_4:51385458-51385477 None:intergenic 25.0%
!! TCAATTTTTGCAATCTTCTA+TGG - chr4_4:51385458-51385477 Msa0686740:CDS 25.0%
! ATTAGTGAAGCAGTATAATT+GGG + chr4_4:51386352-51386371 None:intergenic 25.0%
! AATTAGTGAAGCAGTATAAT+TGG + chr4_4:51386353-51386372 None:intergenic 25.0%
! TCCATAAATAACAGAAACAT+TGG - chr4_4:51386446-51386465 Msa0686740:intron 25.0%
!! TCCAATGTTTCTGTTATTTA+TGG + chr4_4:51386450-51386469 None:intergenic 25.0%
! ATTTACTTGTCAAAATTTGG+AGG + chr4_4:51386522-51386541 None:intergenic 25.0%
!!! TATGAGTAATCAAGTTGTTT+TGG - chr4_4:51386627-51386646 Msa0686740:intron 25.0%
!! CATCAGGTAAGAATTTTATT+TGG - chr4_4:51386705-51386724 Msa0686740:intron 25.0%
! AATTGAAGAAAAGATTTCAG+TGG - chr4_4:51386776-51386795 Msa0686740:intron 25.0%
! GAAACTTAGAATAAATAGTC+TGG - chr4_4:51387155-51387174 Msa0686740:five_prime_UTR 25.0%
GAAAAAGAAGAATATCAACC+AGG - chr4_4:51384323-51384342 Msa0686740:intron 30.0%
! TGATAAAGAAGAGTATAGAG+TGG + chr4_4:51384358-51384377 None:intergenic 30.0%
TGAACTTATAGCAGATAACA+CGG - chr4_4:51384510-51384529 Msa0686740:intron 30.0%
ATTGCTTATCGAAAAACACT+AGG - chr4_4:51384711-51384730 Msa0686740:intron 30.0%
TAAGCTATAAGCTGAAAAAC+TGG + chr4_4:51384752-51384771 None:intergenic 30.0%
AATTCAATCAACTAGCTCAT+CGG - chr4_4:51384962-51384981 Msa0686740:intron 30.0%
AAGCCAGTAAAAAAAACTAC+AGG - chr4_4:51385017-51385036 Msa0686740:intron 30.0%
!!! AGACCTGTAGTTTTTTTTAC+TGG + chr4_4:51385023-51385042 None:intergenic 30.0%
CATTAAAGCTCTATTTGAGA+AGG + chr4_4:51385123-51385142 None:intergenic 30.0%
TAGTAGTGAAAATGTCAAGA+CGG + chr4_4:51385253-51385272 None:intergenic 30.0%
!! TTGGTTTTCCAGAATTTCAA+AGG - chr4_4:51385352-51385371 Msa0686740:CDS 30.0%
! TGGTTTTCCAGAATTTCAAA+GGG - chr4_4:51385353-51385372 Msa0686740:CDS 30.0%
ATAACACCCTGAATGAAATT+GGG - chr4_4:51385376-51385395 Msa0686740:CDS 30.0%
TAACTTCCCAATTTCATTCA+GGG + chr4_4:51385385-51385404 None:intergenic 30.0%
TTAACTTCCCAATTTCATTC+AGG + chr4_4:51385386-51385405 None:intergenic 30.0%
AAGATTGCAAAAATTGAAGG+TGG + chr4_4:51385455-51385474 None:intergenic 30.0%
GACTTTCCAATCAAATTCAT+TGG - chr4_4:51385614-51385633 Msa0686740:CDS 30.0%
TAGATGCCAATGAATTTGAT+TGG + chr4_4:51385623-51385642 None:intergenic 30.0%
! AAAGCACTTGATACAATCAA+TGG - chr4_4:51385765-51385784 Msa0686740:CDS 30.0%
!! AAAGATGACATTGCTTTTGA+TGG + chr4_4:51385820-51385839 None:intergenic 30.0%
ATCAAAAGCAATGTCATCTT+TGG - chr4_4:51385819-51385838 Msa0686740:CDS 30.0%
! GCATTTTGGACTTTTACTTT+GGG - chr4_4:51386046-51386065 Msa0686740:intron 30.0%
AATTGAAGAACAGATTTCAG+CGG + chr4_4:51386219-51386238 None:intergenic 30.0%
ATAATTGATGCTAGCAGTAA+TGG + chr4_4:51386297-51386316 None:intergenic 30.0%
TTAGTGAAGCAGTATAATTG+GGG + chr4_4:51386351-51386370 None:intergenic 30.0%
AATTCTTCAACAGATTGATG+AGG + chr4_4:51386382-51386401 None:intergenic 30.0%
TATAGCAATTTCTTGAAGCT+AGG + chr4_4:51386675-51386694 None:intergenic 30.0%
!! AAACTAGTTGTTGGTGATGA+TGG + chr4_4:51383906-51383925 None:intergenic 35.0%
!! GAAGAGTTTGTTAACATCCA+TGG + chr4_4:51384031-51384050 None:intergenic 35.0%
AAGTTAATCTGAGAGAACGT+TGG + chr4_4:51384059-51384078 None:intergenic 35.0%
CGAAATAAACGGAACAAGTT+AGG - chr4_4:51384177-51384196 Msa0686740:intron 35.0%
! TTCTCCTCGGTTTGTATTTA+AGG - chr4_4:51384215-51384234 Msa0686740:intron 35.0%
!! TTACGTTATCTGCTGTTTCT+TGG - chr4_4:51384277-51384296 Msa0686740:intron 35.0%
!! ATAGAGTGGATTAACTAACC+TGG + chr4_4:51384344-51384363 None:intergenic 35.0%
TATTCTAGTGTTTCCTTCTC+TGG - chr4_4:51385150-51385169 Msa0686740:intron 35.0%
TACATTAACTAAGCCAGAGA+AGG + chr4_4:51385166-51385185 None:intergenic 35.0%
! ATTTTCACTACTACTGACAC+AGG - chr4_4:51385260-51385279 Msa0686740:intron 35.0%
! TTTTCACTACTACTGACACA+GGG - chr4_4:51385261-51385280 Msa0686740:intron 35.0%
AAATATGCCTTATCACCACA+AGG - chr4_4:51385291-51385310 Msa0686740:intron 35.0%
ATTACTTCCTTGTGGTGATA+AGG + chr4_4:51385301-51385320 None:intergenic 35.0%
! GTCATTGATAACCAGATTCT+TGG - chr4_4:51385333-51385352 Msa0686740:CDS 35.0%
! ATTCTGGAAAACCAAGAATC+TGG + chr4_4:51385347-51385366 None:intergenic 35.0%
!! GTGTTATCCCTTTGAAATTC+TGG + chr4_4:51385363-51385382 None:intergenic 35.0%
GATAACACCCTGAATGAAAT+TGG - chr4_4:51385375-51385394 Msa0686740:CDS 35.0%
GGGAAGTTAAATGATCTCAA+CGG - chr4_4:51385396-51385415 Msa0686740:CDS 35.0%
GTTAAATGATCTCAACGGAA+AGG - chr4_4:51385401-51385420 Msa0686740:CDS 35.0%
!! AAAGGACAACCATGTTTTTG+AGG - chr4_4:51385419-51385438 Msa0686740:CDS 35.0%
ACTGTTACCATTGACACTAA+AGG + chr4_4:51385562-51385581 None:intergenic 35.0%
!! TAACAGTTCTGAGGTATTAG+AGG - chr4_4:51385575-51385594 Msa0686740:CDS 35.0%
TGGAAAGTCACAGACAAAAA+AGG + chr4_4:51385603-51385622 None:intergenic 35.0%
TGAGGAAATGACTTTACAAG+TGG - chr4_4:51385653-51385672 Msa0686740:CDS 35.0%
GTTCATACTACACTAATGCA+TGG - chr4_4:51385959-51385978 Msa0686740:intron 35.0%
! GGCATTTTGGACTTTTACTT+TGG - chr4_4:51386045-51386064 Msa0686740:intron 35.0%
AATTCTGCTCTTTACCCAAA+CGG + chr4_4:51386083-51386102 None:intergenic 35.0%
CTTTCAATTCAACATTCCGT+TGG - chr4_4:51386103-51386122 Msa0686740:intron 35.0%
AGCAAAGAAAATGGAGAAGA+TGG + chr4_4:51386258-51386277 None:intergenic 35.0%
AAAAAACAAAAGCTTGGCCA+TGG + chr4_4:51386415-51386434 None:intergenic 35.0%
GCTATAAAACTTCAAGCATC+AGG - chr4_4:51386689-51386708 Msa0686740:intron 35.0%
TTAACTACCGTTGGGAAAAT+CGG + chr4_4:51386841-51386860 None:intergenic 35.0%
!!! ATGCAATGTTTTGACTTCAG+AGG - chr4_4:51387066-51387085 Msa0686740:CDS 35.0%
ATAGTCTGGGCTTGATAAAA+TGG - chr4_4:51387169-51387188 Msa0686740:five_prime_UTR 35.0%
!!! TATCCTGTTTTTAGCTGACG+TGG + chr4_4:51383882-51383901 None:intergenic 40.0%
GAGGTAGAGAAACTAGTTGT+TGG + chr4_4:51383915-51383934 None:intergenic 40.0%
! ACAACTAGTTTCTCTACCTC+TGG - chr4_4:51383915-51383934 Msa0686740:CDS 40.0%
GAGACTTGAATTGAAACCAG+AGG + chr4_4:51383934-51383953 None:intergenic 40.0%
! GTGAAGAATGAAGCATTAGC+AGG + chr4_4:51383980-51383999 None:intergenic 40.0%
ACATCCATGGATGAAGAAGA+AGG + chr4_4:51384018-51384037 None:intergenic 40.0%
CGGGAAGAAGAAACAAATAG+AGG + chr4_4:51384084-51384103 None:intergenic 40.0%
TGCAACCAAGGAAACTTGTA+CGG + chr4_4:51384104-51384123 None:intergenic 40.0%
CGCTTCGTTCTCGAAATAAA+CGG - chr4_4:51384166-51384185 Msa0686740:intron 40.0%
TTCTTCGTCTTCATTCTCCT+CGG - chr4_4:51384202-51384221 Msa0686740:intron 40.0%
GAAAAACACTAGGCTCTGTT+TGG - chr4_4:51384721-51384740 Msa0686740:intron 40.0%
TGTGTTACAGAAAACTCGTC+TGG - chr4_4:51384778-51384797 Msa0686740:intron 40.0%
GACAAAAGGGGTAAACTTGA+GGG + chr4_4:51384893-51384912 None:intergenic 40.0%
TGACAAAAGGGGTAAACTTG+AGG + chr4_4:51384894-51384913 None:intergenic 40.0%
TTCGCAACATTACTTCCTTG+TGG + chr4_4:51385309-51385328 None:intergenic 40.0%
GAATCTGGTTATCAATGACC+TGG + chr4_4:51385332-51385351 None:intergenic 40.0%
AAAATTGAAGGTGGACCTCT+TGG + chr4_4:51385446-51385465 None:intergenic 40.0%
TTTGCAATCTTCTATGGTGC+AGG - chr4_4:51385464-51385483 Msa0686740:CDS 40.0%
GTTCTTGACTCTAGTGTCAA+TGG - chr4_4:51385528-51385547 Msa0686740:CDS 40.0%
GACTCTAGTGTCAATGGTAA+CGG - chr4_4:51385534-51385553 Msa0686740:CDS 40.0%
AACGGTTCCTTTAGTGTCAA+TGG - chr4_4:51385552-51385571 Msa0686740:CDS 40.0%
TGTCAATGGTAACAGTTCTG+AGG - chr4_4:51385566-51385585 Msa0686740:CDS 40.0%
!! ACAGAAGAAGTGTTATGCTC+AGG + chr4_4:51385735-51385754 None:intergenic 40.0%
GAGCATAACACTTCTTCTGT+TGG - chr4_4:51385735-51385754 Msa0686740:CDS 40.0%
TAACGCATGTTAACATGCGT+AGG - chr4_4:51386022-51386041 Msa0686740:intron 40.0%
AACGCATGTTAACATGCGTA+GGG - chr4_4:51386023-51386042 Msa0686740:intron 40.0%
AAATGCTAAAATGCCCTCAG+CGG - chr4_4:51386183-51386202 Msa0686740:intron 40.0%
GGGAAAGAGAGCAAAGAAAA+TGG + chr4_4:51386267-51386286 None:intergenic 40.0%
! TGATGCTAGCAGTAATGGAA+CGG + chr4_4:51386292-51386311 None:intergenic 40.0%
AAGAATTGCCTCTTTCTCCA+TGG - chr4_4:51386395-51386414 Msa0686740:intron 40.0%
GTGAAGAAAAGCAACGAAGA+TGG - chr4_4:51386731-51386750 Msa0686740:intron 40.0%
AAATACTAAAATGCCCCCAG+CGG + chr4_4:51386867-51386886 None:intergenic 40.0%
!!! CAATGTTTTGACTTCAGAGG+TGG - chr4_4:51387069-51387088 Msa0686740:CDS 40.0%
TAAACAATGCTGCAACTGCT+TGG + chr4_4:51387095-51387114 None:intergenic 40.0%
CAGTTGCAGCATTGTTTAGA+AGG - chr4_4:51387097-51387116 Msa0686740:CDS 40.0%
AAGGCTTCATATTCCTTACC+AGG - chr4_4:51387116-51387135 Msa0686740:exon 40.0%
AGGCTTCATATTCCTTACCA+GGG - chr4_4:51387117-51387136 Msa0686740:exon 40.0%
TTTGATTCACTACCCTGGTA+AGG + chr4_4:51387132-51387151 None:intergenic 40.0%
TACCAGGGTAGTGAATCAAA+TGG - chr4_4:51387132-51387151 Msa0686740:five_prime_UTR 40.0%
ACCAGGGTAGTGAATCAAAT+GGG - chr4_4:51387133-51387152 Msa0686740:five_prime_UTR 40.0%
ATTGGAGCTCATCCCAATTA+CGG - chr4_4:51387235-51387254 Msa0686740:five_prime_UTR 40.0%
! ATTTTTGCCGAGCCGTAATT+GGG + chr4_4:51387250-51387269 None:intergenic 40.0%
!! TATTTTTGCCGAGCCGTAAT+TGG + chr4_4:51387251-51387270 None:intergenic 40.0%
TCGAACTGGAAATCTATCTC+TGG - chr4_4:51387293-51387312 Msa0686740:five_prime_UTR 40.0%
TGTGGTGGCTCACAGATTAA+CGG - chr4_4:51383841-51383860 Msa0686740:CDS 45.0%
TCCTCCTTCTTCTTCATCCA+TGG - chr4_4:51384011-51384030 Msa0686740:CDS 45.0%
TCCATGGATGAAGAAGAAGG+AGG + chr4_4:51384015-51384034 None:intergenic 45.0%
TCTTCCCGTACAAGTTTCCT+TGG - chr4_4:51384096-51384115 Msa0686740:intron 45.0%
GCAACCAAGGAAACTTGTAC+GGG + chr4_4:51384103-51384122 None:intergenic 45.0%
! ATGTAGGTGGTTTGAGACTG+TGG + chr4_4:51384128-51384147 None:intergenic 45.0%
GAAGCTGAAGCTGAAGATGT+AGG + chr4_4:51384144-51384163 None:intergenic 45.0%
GCAGCCTTAAATACAAACCG+AGG + chr4_4:51384222-51384241 None:intergenic 45.0%
AGGAAGTAATGTTGCGAACC+AGG - chr4_4:51385311-51385330 Msa0686740:intron 45.0%
CCTCTTGGTCCTCAAAAACA+TGG + chr4_4:51385431-51385450 None:intergenic 45.0%
!! CCATGTTTTTGAGGACCAAG+AGG - chr4_4:51385428-51385447 Msa0686740:CDS 45.0%
AGGAAACAGCCATGAAGACT+CGG - chr4_4:51385484-51385503 Msa0686740:CDS 45.0%
ATCTAACGTCCGAGTCTTCA+TGG + chr4_4:51385496-51385515 None:intergenic 45.0%
! GGCATCTATAGCTTTTGCTG+AGG - chr4_4:51385635-51385654 Msa0686740:CDS 45.0%
! TCTTGAGTTGCCTTTGAGTG+AGG - chr4_4:51385704-51385723 Msa0686740:CDS 45.0%
TCAGGTTTGACCTCACTCAA+AGG + chr4_4:51385717-51385736 None:intergenic 45.0%
ACGCATGTTAACATGCGTAG+GGG - chr4_4:51386024-51386043 Msa0686740:intron 45.0%
!!! TAACATGCGTAGGGGCATTT+TGG - chr4_4:51386032-51386051 Msa0686740:intron 45.0%
! CTAGCAGTAATGGAACGGTT+GGG + chr4_4:51386287-51386306 None:intergenic 45.0%
AGCGGTAGTTAACTACCGTT+GGG + chr4_4:51386849-51386868 None:intergenic 45.0%
AACGGTAGTTAACTACCGCT+GGG - chr4_4:51386849-51386868 Msa0686740:CDS 45.0%
TCCCATTTGATTCACTACCC+TGG + chr4_4:51387137-51387156 None:intergenic 45.0%
CAGTTCGAATGTTTCGTTGC+TGG + chr4_4:51387281-51387300 None:intergenic 45.0%
CAGCAACGAAACATTCGAAC+TGG - chr4_4:51387279-51387298 Msa0686740:five_prime_UTR 45.0%
TGAGACTGTGGTTGCAACCA+AGG + chr4_4:51384116-51384135 None:intergenic 50.0%
GCTGAAGCTGAAGATGTAGG+TGG + chr4_4:51384141-51384160 None:intergenic 50.0%
TGGGAATGAGCAGAACCGTT+TGG - chr4_4:51386065-51386084 Msa0686740:intron 50.0%
GGGAATGAGCAGAACCGTTT+GGG - chr4_4:51386066-51386085 Msa0686740:intron 50.0%
CGGTAGTTAACTACCGCTGA+GGG + chr4_4:51386203-51386222 None:intergenic 50.0%
! GCTAGCAGTAATGGAACGGT+TGG + chr4_4:51386288-51386307 None:intergenic 50.0%
AAGCTTGGCCATGGAGAAAG+AGG + chr4_4:51386406-51386425 None:intergenic 50.0%
CAGTGGTAGTTAACTACCGC+TGG - chr4_4:51386793-51386812 Msa0686740:intron 50.0%
ACTACCGTTGGGAAAATCGG+CGG + chr4_4:51386838-51386857 None:intergenic 50.0%
CAGCGGTAGTTAACTACCGT+TGG + chr4_4:51386850-51386869 None:intergenic 50.0%
CAACGGTAGTTAACTACCGC+TGG - chr4_4:51386848-51386867 Msa0686740:CDS 50.0%
ACGGTAGTTAACTACCGCTG+GGG - chr4_4:51386850-51386869 Msa0686740:CDS 50.0%
CCAAAGCTTGCATCGCCATT+CGG - chr4_4:51387198-51387217 Msa0686740:five_prime_UTR 50.0%
AGCTCATCCCAATTACGGCT+CGG - chr4_4:51387240-51387259 Msa0686740:five_prime_UTR 50.0%
GCGCCACGTCAGCTAAAAAC+AGG - chr4_4:51383876-51383895 Msa0686740:CDS 55.0%
GCGGTAGTTAACTACCGCTG+AGG + chr4_4:51386202-51386221 None:intergenic 55.0%
TTAACTACCGCTGGCACCAG+CGG - chr4_4:51386802-51386821 Msa0686740:intron 55.0%
!!! ACCACCGCCGATTTTCCCAA+CGG - chr4_4:51386831-51386850 Msa0686740:CDS 55.0%
CGGTAGTTAACTACCGCTGG+GGG - chr4_4:51386851-51386870 Msa0686740:CDS 55.0%
CCGAATGGCGATGCAAGCTT+TGG + chr4_4:51387201-51387220 None:intergenic 55.0%
AAGCTTGCATCGCCATTCGG+CGG - chr4_4:51387201-51387220 Msa0686740:five_prime_UTR 55.0%
TCACCTTGGAAACCGCCGAA+TGG + chr4_4:51387216-51387235 None:intergenic 55.0%
TCGGCGGTTTCCAAGGTGAT+TGG - chr4_4:51387217-51387236 Msa0686740:five_prime_UTR 55.0%
GGGATGAGCTCCAATCACCT+TGG + chr4_4:51387230-51387249 None:intergenic 55.0%
! TTAACTGCCGCTGGTGCCAG+CGG + chr4_4:51386812-51386831 None:intergenic 60.0%
ACCGTTGGGAAAATCGGCGG+TGG + chr4_4:51386835-51386854 None:intergenic 60.0%
TCGCCATTCGGCGGTTTCCA+AGG - chr4_4:51387210-51387229 Msa0686740:five_prime_UTR 60.0%
CGGCGGTGGTTAACTGCCGC+TGG + chr4_4:51386821-51386840 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 51383835 51387320 51383835 ID=Msa0686740;Name=Msa0686740
chr4_4 mRNA 51383835 51387320 51383835 ID=Msa0686740-mRNA-1;Parent=Msa0686740;Name=Msa0686740-mRNA-1;_AED=0.10;_eAED=0.10;_QI=195|0.33|0.25|0.5|1|1|4|0|379
chr4_4 exon 51383835 51384069 51383835 ID=Msa0686740-mRNA-1:exon:13265;Parent=Msa0686740-mRNA-1
chr4_4 exon 51384445 51384485 51384445 ID=Msa0686740-mRNA-1:exon:13264;Parent=Msa0686740-mRNA-1
chr4_4 exon 51385325 51385873 51385325 ID=Msa0686740-mRNA-1:exon:13263;Parent=Msa0686740-mRNA-1
chr4_4 exon 51386811 51387320 51386811 ID=Msa0686740-mRNA-1:exon:13262;Parent=Msa0686740-mRNA-1
chr4_4 five_prime_UTR 51387126 51387320 51387126 ID=Msa0686740-mRNA-1:five_prime_utr;Parent=Msa0686740-mRNA-1
chr4_4 CDS 51386811 51387125 51386811 ID=Msa0686740-mRNA-1:cds;Parent=Msa0686740-mRNA-1
chr4_4 CDS 51385325 51385873 51385325 ID=Msa0686740-mRNA-1:cds;Parent=Msa0686740-mRNA-1
chr4_4 CDS 51384445 51384485 51384445 ID=Msa0686740-mRNA-1:cds;Parent=Msa0686740-mRNA-1
chr4_4 CDS 51383835 51384069 51383835 ID=Msa0686740-mRNA-1:cds;Parent=Msa0686740-mRNA-1
Gene Sequence

>Msa0686740

ATGGATGTTAACAAACTCTTCAGCAACCAACGTTCTCTCAGATTAACTTCTCCTCTATTTGTTTCTTCTTCCCGTACAAGTTTCCTTGGTTGCAACCACAGTCTCAAACCACCTACATCTTCAGCTTCAGCTTCGTCGCTTCGTTCTCGAAATAAACGGAACAAGTTAGGACTTCTTCGTCTTCATTCTCCTCGGTTTGTATTTAAGGCTGCTTTAAACTCTCAGCTTATTGTCGTTGTCGTTGTTGTTACGTTATCTGCTGTTTCTTGGATTCATTTCACTCTTAACAATAAGAAAAAGAAGAATATCAACCAGGGACATGCAAAATATGCCTTATCACCACAAGGAAGTAATGTTGCGAACCAGGTCATTGATAACCAGATTCTTGGTTTTCCAGAATTTCAAAGGGATAACACCCTGAATGAAATTGGGAAGTTAAATGATCTCAACGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGTCCACCTTCAATTTTTGCAATCTTCTATGGTGCAGGAAACAGCCATGAAGACTCGGACGTTAGATTCATCATCATCTGTTCTTGACTCTAGTGTCAATGGTAACGGTTCCTTTAGTGTCAATGGTAACAGTTCTGAGGTATTAGAGGAGCCTTTTTTGTCTGTGACTTTCCAATCAAATTCATTGGCATCTATAGCTTTTGCTGAGGAAATGACTTTACAAGTGGAAGAAAGTCAAGATGTTGCTGACTCTGCTCTTGAGTTGCCTTTGAGTGAGGTCAAACCTGAGCATAACACTTCTTCTGTTGGTTTAGACAAAGCACTTGATACAATCAATGGCCATACTAAAGAAAAAATTGATCTTCATGCCATCAAAAGCAATCTCCTAGCTTCAAGAAATTGCTATAAAACTTCAAGCATCAGAGGTGGCCAAGCAGTTGCAGCATTGTTTAGAAGGCTTCATATTCCTTACCAGGGTAGTGAATCAAATGGGAAACTTAGAATAAATAGTCTGGGCTTGATAAAATGGTATCAGCCAAAGCTTGCATCGCCATTCGGCGGTTTCCAAGGTGATTGGAGCTCATCCCAATTACGGCTCGGCAAAAATATTAGCAACCAGCAACGAAACATTCGAACTGGAAATCTATCTCTGGACTAA

Protein sequence

>Msa0686740

MDVNKLFSNQRSLRLTSPLFVSSSRTSFLGCNHSLKPPTSSASASSLRSRNKRNKLGLLRLHSPRFVFKAALNSQLIVVVVVVTLSAVSWIHFTLNNKKKKNINQGHAKYALSPQGSNVANQVIDNQILGFPEFQRDNTLNEIGKLNDLNGKDNHVFEDQEVHLQFLQSSMVQETAMKTRTLDSSSSVLDSSVNGNGSFSVNGNSSEVLEEPFLSVTFQSNSLASIAFAEEMTLQVEESQDVADSALELPLSEVKPEHNTSSVGLDKALDTINGHTKEKIDLHAIKSNLLASRNCYKTSSIRGGQAVAALFRRLHIPYQGSESNGKLRINSLGLIKWYQPKLASPFGGFQGDWSSSQLRLGKNISNQQRNIRTGNLSLD*