AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718900 MtrunA17_Chr5g0408591 97.674 559 12 1 1 559 1 558 0.0 1127
Msa0718900 MtrunA17_Chr7g0240501 46.354 384 195 2 102 474 168 551 4.60e-113 350
Msa0718900 MtrunA17_Chr4g0038651 47.383 363 183 3 117 471 86 448 5.25e-112 345
Msa0718900 MtrunA17_Chr3g0112731 45.596 386 199 4 114 488 96 481 1.57e-110 342
Msa0718900 MtrunA17_Chr5g0436141 45.812 382 196 3 120 490 84 465 6.61e-110 340
Msa0718900 MtrunA17_Chr4g0008771 46.832 363 187 2 118 474 96 458 6.08e-107 331
Msa0718900 MtrunA17_Chr4g0004771 46.240 359 174 6 118 471 90 434 6.26e-106 328
Msa0718900 MtrunA17_Chr2g0331631 46.348 356 180 5 118 471 86 432 5.19e-104 323
Msa0718900 MtrunA17_Chr8g0348921 44.267 375 184 4 117 471 96 465 2.92e-101 314
Msa0718900 MtrunA17_Chr6g0485861 45.730 363 185 6 122 482 100 452 2.93e-101 317
Msa0718900 MtrunA17_Chr7g0247761 39.089 417 186 5 118 471 113 524 2.93e-87 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718900 AT1G31650.1 61.324 574 190 9 1 547 1 569 0.0 654
Msa0718900 AT1G31650.2 61.722 546 179 8 27 547 1 541 0.0 623
Msa0718900 AT4G38430.1 48.077 364 180 3 117 471 89 452 5.81e-113 347
Msa0718900 AT5G05940.1 45.128 390 199 3 114 488 98 487 8.49e-111 343
Msa0718900 AT5G02010.1 46.631 371 187 3 117 478 69 437 4.59e-110 339
Msa0718900 AT4G00460.2 40.795 478 230 11 18 471 18 466 7.95e-105 323
Msa0718900 AT4G00460.4 40.795 478 230 11 18 471 18 466 7.95e-105 323
Msa0718900 AT3G24620.1 43.716 366 196 3 115 479 82 438 1.15e-101 317
Msa0718900 AT1G79860.1 45.658 357 181 6 117 471 91 436 1.46e-101 317
Msa0718900 AT4G13240.1 45.429 361 187 4 115 474 71 422 5.04e-101 315
Msa0718900 AT1G01700.1 44.186 387 192 5 99 471 102 478 8.47e-100 311
Msa0718900 AT3G16130.1 42.119 387 210 5 97 480 71 446 1.30e-96 304
Msa0718900 AT5G05940.2 44.152 342 179 2 114 443 98 439 1.84e-96 302
Msa0718900 AT1G52240.1 43.923 362 190 5 114 474 100 449 4.86e-95 300
Msa0718900 AT1G01700.4 38.511 470 221 8 54 471 55 508 2.68e-93 295
Msa0718900 AT3G55660.1 42.975 363 198 4 115 468 104 466 2.59e-92 295
Msa0718900 AT5G19560.1 44.044 361 192 4 115 473 41 393 5.81e-90 286
Msa0718900 AT5G19560.5 44.044 361 192 4 115 473 41 393 5.81e-90 286
Msa0718900 AT5G19560.4 44.044 361 192 4 115 473 60 412 1.14e-89 285
Msa0718900 AT2G45890.1 41.711 374 193 5 115 471 90 455 4.04e-87 277
Msa0718900 AT1G01700.3 42.857 364 177 7 99 441 102 455 1.63e-84 270
Msa0718900 AT4G00460.3 42.814 334 166 5 155 471 8 333 1.26e-82 261
Msa0718900 AT3G55660.2 41.317 334 187 4 115 439 104 437 5.49e-81 261
Msa0718900 AT5G19560.2 42.508 327 178 4 115 439 60 378 7.45e-76 245
Msa0718900 AT4G00460.1 41.486 323 151 7 18 323 18 319 1.17e-67 223
Msa0718900 AT1G01700.5 42.361 288 137 4 54 323 55 331 1.07e-64 216
Msa0718900 AT1G01700.2 42.361 288 137 4 54 323 55 331 1.07e-64 216
Msa0718900 AT5G19560.3 40.449 267 149 4 209 473 5 263 8.74e-52 181

Find 123 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGAACAGTAACTAAATT+TGG 0.209605 5_1:+13287462 None:intergenic
AACAGCTTCCAATTTATTAA+TGG 0.226323 5_1:+13279209 None:intergenic
CCTTGAGACCATTAATAAAT+TGG 0.239944 5_1:-13279217 Msa0718900:CDS
TGATAAACTTGAGTTATTAT+TGG 0.246352 5_1:-13279091 Msa0718900:CDS
TTGACAGCTGAATCAACTTC+TGG 0.292107 5_1:-13279285 Msa0718900:CDS
TCAGGAATTATGACATATAA+TGG 0.295381 5_1:-13281253 Msa0718900:intron
TTGTTATCTCTGTAGGATAT+TGG 0.303057 5_1:-13278754 Msa0718900:intron
GAAGCGTATTCCAGAGTTCT+TGG 0.321753 5_1:-13278718 Msa0718900:CDS
AAGAAAGAGGTTGGTTCATC+AGG 0.325300 5_1:-13279728 Msa0718900:CDS
AAGAAATGTTTGAGGAAGAT+TGG 0.333774 5_1:+13279026 None:intergenic
ATTTGGCAGCCTTGAATACT+TGG 0.340330 5_1:+13279692 None:intergenic
CTGCATAACAATGCAATCTA+AGG 0.341741 5_1:-13287259 Msa0718900:intron
CTCTTTCTTTCTTCAGATAG+AGG 0.341999 5_1:+13280340 None:intergenic
TCAGAGATATTATTTATTCC+AGG 0.347750 5_1:+13278610 None:intergenic
TTACTTGGTGAAGATGTTAC+TGG 0.361690 5_1:-13280938 Msa0718900:CDS
CAATGGTGAAAACAGAGTTT+TGG 0.364768 5_1:-13279861 Msa0718900:CDS
CAAATTTAGTTACTGTTCAT+AGG 0.371536 5_1:-13287461 Msa0718900:five_prime_UTR
GAGCAAATGGCGAAGAGAAA+TGG 0.382512 5_1:-13280320 Msa0718900:CDS
GTGTAGCTATTATCACATCT+TGG 0.389486 5_1:+13278470 None:intergenic
GGATATTGGACATTCCATTC+TGG 0.394307 5_1:-13278740 Msa0718900:CDS
TCTTCAAGCAAAGATGCGTT+TGG 0.398072 5_1:-13281124 Msa0718900:CDS
CAAAGTGTTTAACAATGAAA+AGG 0.400663 5_1:-13281090 Msa0718900:CDS
GATGCTGCTAAAGTTCAATA+TGG 0.402749 5_1:-13279003 Msa0718900:CDS
TAAGCATAGAGTCCAACTTC+TGG 0.406157 5_1:+13280080 None:intergenic
GATGAGAATAAAGTAATGTA+TGG 0.412466 5_1:+13287394 None:intergenic
CACACTCATGTCTTTCCCTT+CGG 0.412875 5_1:+13279816 None:intergenic
TGTAGCTATTATCACATCTT+GGG 0.415683 5_1:+13278471 None:intergenic
TGTTTAGAATGCAACTTTCA+AGG 0.431869 5_1:+13281230 None:intergenic
TGAATGTCTGCACGAGCTTT+AGG 0.436123 5_1:+13280121 None:intergenic
TAGCTTCAATATCTGAATGT+TGG 0.436489 5_1:+13280984 None:intergenic
AATCACCGGTTCGAACTTCA+TGG 0.438603 5_1:-13279143 Msa0718900:CDS
AGAAATGTTTGAGGAAGATT+GGG 0.439291 5_1:+13279027 None:intergenic
AGAACTATGGAACAAGTTAC+TGG 0.440000 5_1:-13279168 Msa0718900:CDS
ACTGTCTCCTACAAACTATA+TGG 0.440626 5_1:-13280290 Msa0718900:CDS
ATGAACAAGGACTTGAAGAA+TGG 0.447540 5_1:-13281063 Msa0718900:CDS
AGTTTATCAGCTTCTGACAT+AGG 0.450031 5_1:+13279105 None:intergenic
AGCTCAACCATATAGTTTGT+AGG 0.458810 5_1:+13280283 None:intergenic
AGATGTTACTGGAGGAACTA+AGG 0.464313 5_1:-13280927 Msa0718900:CDS
CTGAAGAAAGAAAGAGCAAA+TGG 0.467672 5_1:-13280333 Msa0718900:CDS
GGTCTCAAGGGCCATATGTT+CGG 0.469228 5_1:+13279230 None:intergenic
TTCAGATATTGAAGCTATGA+AGG 0.469502 5_1:-13280978 Msa0718900:CDS
AAAGTGTTTAACAATGAAAA+GGG 0.471202 5_1:-13281089 Msa0718900:CDS
TAAGGGCATCACTACAGCTT+TGG 0.471817 5_1:-13280909 Msa0718900:CDS
AACTCACTAAGTTGCTCCCC+TGG 0.474068 5_1:-13278628 Msa0718900:CDS
CAATTTGAAATCCGAACATA+TGG 0.474139 5_1:-13279241 Msa0718900:CDS
ATAAGAATATAGAGAGAGGA+AGG 0.475890 5_1:+13287433 None:intergenic
AATGCCATCACAAACTTGTC+AGG 0.477719 5_1:-13280878 Msa0718900:intron
GAGTCCAACTTCTGGAGTGC+TGG 0.477913 5_1:+13280088 None:intergenic
TGAACAAGGACTTGAAGAAT+GGG 0.481493 5_1:-13281062 Msa0718900:CDS
TCTTCCAGCACTCCAGAAGT+TGG 0.489929 5_1:-13280092 Msa0718900:CDS
GGCTAAATTTCCAAGAACTC+TGG 0.491194 5_1:+13278708 None:intergenic
GGTGGTACGCCAAGTATTCA+AGG 0.491614 5_1:-13279701 Msa0718900:CDS
CCAATTTATTAATGGTCTCA+AGG 0.492231 5_1:+13279217 None:intergenic
GAGATGTTTAGAATGAAGAA+AGG 0.494814 5_1:-13285766 Msa0718900:CDS
AGCAGAACAAGTAGAGGAGA+CGG 0.494848 5_1:-13281187 Msa0718900:CDS
TAAATAATATCTCTGAAACT+TGG 0.499561 5_1:-13278603 Msa0718900:CDS
GTTTATCAGCTTCTGACATA+GGG 0.501172 5_1:+13279106 None:intergenic
TGCCAATGGTAGAATCTTTG+AGG 0.504782 5_1:-13280239 Msa0718900:intron
AGTTTGTTAGAGCTTAACTT+TGG 0.505063 5_1:+13278109 None:intergenic
GAGGGAGGAAGCAGGACCGA+AGG 0.507585 5_1:-13279832 Msa0718900:CDS
ACAGGATGCACTTGATTCAA+TGG 0.509215 5_1:-13279878 Msa0718900:intron
CCTTGTGCAGTTCTTGTCCA+AGG 0.510155 5_1:+13279310 None:intergenic
GCAGCATCAAGAAATGTTTG+AGG 0.512844 5_1:+13279018 None:intergenic
CAATTTATTAATGGTCTCAA+GGG 0.515889 5_1:+13279218 None:intergenic
CAGAGATATTATTTATTCCA+GGG 0.516460 5_1:+13278611 None:intergenic
ATCATCGTCATCAAATGAAT+CGG 0.519579 5_1:+13281156 None:intergenic
CTCGTTGAAAGAGAGAACTA+TGG 0.524461 5_1:-13279181 Msa0718900:CDS
CACCAAGCAGGAGTAGTGTC+TGG 0.526331 5_1:-13278450 Msa0718900:CDS
AATGTATGGAGGAAGAAGAA+TGG 0.526877 5_1:+13287408 None:intergenic
AAAGTATGGACTTACTCTCT+TGG 0.527670 5_1:+13285695 None:intergenic
GACTAGCTTGCTGCAGCAGA+GGG 0.530037 5_1:-13285744 Msa0718900:CDS
TGATACCGCAAGAAAGAGGT+TGG 0.530544 5_1:-13279737 Msa0718900:CDS
TACCTCAAAGATTCTACCAT+TGG 0.531632 5_1:+13280237 None:intergenic
GAGAATAAAGTAATGTATGG+AGG 0.538610 5_1:+13287397 None:intergenic
TTCAGCATATTGTCTAGAAT+AGG 0.545508 5_1:-13278685 Msa0718900:CDS
CACCAGACACTACTCCTGCT+TGG 0.546870 5_1:+13278448 None:intergenic
AAAGACCATGAAGTTCGAAC+CGG 0.547808 5_1:+13279138 None:intergenic
TCTGGAATACGCTTCCAGAA+TGG 0.548749 5_1:+13278726 None:intergenic
TAATATCTCTGAAACTTGGA+TGG 0.549387 5_1:-13278599 Msa0718900:CDS
GAATGTTGGATTGCATAAGA+AGG 0.550363 5_1:+13280998 None:intergenic
AAACAATCAGTCTTATGAAG+AGG 0.554003 5_1:-13281212 Msa0718900:CDS
TTCTATGTTGCAGTCTGGAA+AGG 0.559632 5_1:-13279337 Msa0718900:intron
AGAGATATTATTTATTCCAG+GGG 0.565546 5_1:+13278612 None:intergenic
TATTAGAGATGCACTTGCAA+AGG 0.565718 5_1:-13279626 Msa0718900:intron
AGTGCATCTCTAATAACTGT+TGG 0.565972 5_1:+13279634 None:intergenic
GATGTTACTGGAGGAACTAA+GGG 0.566443 5_1:-13280926 Msa0718900:CDS
AGAAAGAGGTTGGTTCATCA+GGG 0.566470 5_1:-13279727 Msa0718900:CDS
AGGGAGGAAGCAGGACCGAA+GGG 0.567526 5_1:-13279831 Msa0718900:CDS
TTATGCAGTGAAAAGTTCAA+TGG 0.568269 5_1:+13287274 None:intergenic
TTTCTGATACCGCAAGAAAG+AGG 0.568553 5_1:-13279741 Msa0718900:CDS
TGATAATAGCTACACCAAGC+AGG 0.570801 5_1:-13278462 Msa0718900:CDS
GGATATAAGAATATAGAGAG+AGG 0.573068 5_1:+13287429 None:intergenic
GTTCTTTATTGACAATGAAG+AGG 0.574025 5_1:-13278261 Msa0718900:three_prime_UTR
CAAAAGATGAACAAAGCAGA+TGG 0.584707 5_1:-13278547 Msa0718900:CDS
GGTATGGTGAGGGAGGAAGC+AGG 0.588600 5_1:-13279840 Msa0718900:CDS
CAGTCTGGAAAGGCAAACCT+TGG 0.594632 5_1:-13279327 Msa0718900:CDS
ACAAGTTACTGGCAAATCAC+CGG 0.594634 5_1:-13279157 Msa0718900:CDS
GAGGAAAGCAGAACAAGTAG+AGG 0.594944 5_1:-13281193 Msa0718900:CDS
GGACTAGCTTGCTGCAGCAG+AGG 0.599307 5_1:-13285745 Msa0718900:CDS
TGCTAAAGTTCAATATGGCA+AGG 0.601273 5_1:-13278998 Msa0718900:intron
TCTCTAATAACTGTTGGCAC+AGG 0.604103 5_1:+13279640 None:intergenic
AATAGGAGATATATTACAAG+AGG 0.605594 5_1:-13278668 Msa0718900:CDS
TATTCTAGACAATATGCTGA+AGG 0.609235 5_1:+13278687 None:intergenic
GAGGTTGGTTCATCAGGGAA+AGG 0.610824 5_1:-13279722 Msa0718900:CDS
TATCTCTGAAACTTGGATGG+TGG 0.612314 5_1:-13278596 Msa0718900:CDS
ATGAACCAACCTCTTTCTTG+CGG 0.616377 5_1:+13279732 None:intergenic
CCTTGGACAAGAACTGCACA+AGG 0.620947 5_1:-13279310 Msa0718900:CDS
AATGGCGAAGAGAAATGGAC+TGG 0.621786 5_1:-13280315 Msa0718900:CDS
CAAGCTTAAGCATATAGCAA+TGG 0.623474 5_1:+13287303 None:intergenic
TCACTTTAACAAATGTACTG+TGG 0.626144 5_1:+13285791 None:intergenic
GCTAAGCAAAACAATGCCAA+TGG 0.628095 5_1:-13280253 Msa0718900:CDS
CAAGGTCCAATCAAATTCAA+CGG 0.635223 5_1:-13287486 None:intergenic
AGTGAAAAGTTCAATGGTGA+TGG 0.637154 5_1:+13287280 None:intergenic
GTTGGTTCATCAGGGAAAGG+TGG 0.638880 5_1:-13279719 Msa0718900:CDS
CATACCTGACAAGTTTGTGA+TGG 0.644339 5_1:+13280874 None:intergenic
TGTCTGGTGCATTAGTAGAG+AGG 0.658828 5_1:-13278434 Msa0718900:CDS
CTTGGTGAAGATGTTACTGG+AGG 0.664082 5_1:-13280935 Msa0718900:CDS
AGAACAAGTAGAGGAGACGG+AGG 0.669728 5_1:-13281184 Msa0718900:CDS
ATGAAAAGGGAAGATGAACA+AGG 0.671938 5_1:-13281076 Msa0718900:CDS
GTGTGCGGCATAGTAAAAGA+TGG 0.678764 5_1:-13279798 Msa0718900:CDS
TGCGGCATAGTAAAAGATGG+TGG 0.684737 5_1:-13279795 Msa0718900:CDS
AAGGGAAAGACATGAGTGTG+CGG 0.684788 5_1:-13279813 Msa0718900:CDS
GCTGTAAAAGTGTTTCAGCA+CGG 0.690145 5_1:+13279067 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATAAATTCATAGA+CGG + chr5_1:13278692-13278711 None:intergenic 10.0%
!! AAATTATAATTCTTTGATAA+CGG - chr5_1:13280637-13280656 Msa0718900:intron 10.0%
!! TAAATATTAAATAAATTCCA+TGG + chr5_1:13281106-13281125 None:intergenic 10.0%
!!! TTTAATATTTAAGTTTACTA+TGG - chr5_1:13281115-13281134 Msa0718900:CDS 10.0%
!!! AATTTTTATTTATTATCGTT+TGG - chr5_1:13281148-13281167 Msa0718900:CDS 10.0%
!! AAGAAAAATATATGTATAAT+TGG + chr5_1:13281471-13281490 None:intergenic 10.0%
!! AATTTGTAATATTAAAATGT+GGG + chr5_1:13282308-13282327 None:intergenic 10.0%
!! AAATTTGTAATATTAAAATG+TGG + chr5_1:13282309-13282328 None:intergenic 10.0%
!! AAGTAATAAAATTCATAAAA+AGG + chr5_1:13282922-13282941 None:intergenic 10.0%
!!! TTTTATTTTAATTTCATGTT+TGG + chr5_1:13283441-13283460 None:intergenic 10.0%
!! TAATAAATATTTACCATTTA+TGG + chr5_1:13283546-13283565 None:intergenic 10.0%
!! ATAGATTATATACAATTATA+GGG + chr5_1:13283605-13283624 None:intergenic 10.0%
!! TATAGATTATATACAATTAT+AGG + chr5_1:13283606-13283625 None:intergenic 10.0%
!! TATATAATCTATAATCTATA+AGG - chr5_1:13283613-13283632 Msa0718900:intron 10.0%
!! TTATAAATAAATTCATAGAC+GGG + chr5_1:13278691-13278710 None:intergenic 15.0%
!! AACTTTAATCAAAATATGAT+TGG + chr5_1:13278720-13278739 None:intergenic 15.0%
!! TATCATTTCTCTATTAATTT+AGG - chr5_1:13279225-13279244 Msa0718900:CDS 15.0%
!!! TAATTTTATAATGAGACTTT+GGG - chr5_1:13279255-13279274 Msa0718900:CDS 15.0%
!!! ATTTTAAAGTCAATTTGTTA+TGG + chr5_1:13281236-13281255 None:intergenic 15.0%
!! TTAAATTTAAGTAACCAAAA+CGG + chr5_1:13281395-13281414 None:intergenic 15.0%
!!! TACATATATTTTTCTTACAA+TGG - chr5_1:13281475-13281494 Msa0718900:intron 15.0%
!!! GTTTTGTTATTTCATAAATT+TGG + chr5_1:13281552-13281571 None:intergenic 15.0%
!! ATTATCATTATCAAAAACAA+AGG + chr5_1:13282167-13282186 None:intergenic 15.0%
!! ATTACAAATTTCTTACTATT+TGG - chr5_1:13282318-13282337 Msa0718900:intron 15.0%
!! TTTCTTTCTTTCTAATTATT+AGG - chr5_1:13282425-13282444 Msa0718900:intron 15.0%
!!! ATTTTGATCTTTTCATAAAA+AGG + chr5_1:13283144-13283163 None:intergenic 15.0%
!!! ACTTTAATGTTTTTTTTTCT+GGG + chr5_1:13283218-13283237 None:intergenic 15.0%
!!! TATTTAAAACCATATTACTT+TGG + chr5_1:13284058-13284077 None:intergenic 15.0%
!!! AATATTTATGTTTTCCAAAA+GGG + chr5_1:13284295-13284314 None:intergenic 15.0%
!!! AAATATTTATGTTTTCCAAA+AGG + chr5_1:13284296-13284315 None:intergenic 15.0%
!!! ATTCATTTCTATTTTTCTTT+CGG - chr5_1:13285153-13285172 Msa0718900:intron 15.0%
!! TCAGATATAAAAAAAATCTA+TGG + chr5_1:13287214-13287233 None:intergenic 15.0%
!!! TTTTTTATACTGAAAGTTGA+TGG - chr5_1:13278423-13278442 Msa0718900:CDS 20.0%
!! AGATCAAATAAAAAAGAGAA+AGG + chr5_1:13278483-13278502 None:intergenic 20.0%
!!! AAGTTTTTCAAAAGTAAATG+AGG + chr5_1:13278514-13278533 None:intergenic 20.0%
!! TTTGATTAAAGTTCTTAGAA+TGG - chr5_1:13278727-13278746 Msa0718900:CDS 20.0%
!! TTGATTAAAGTTCTTAGAAT+GGG - chr5_1:13278728-13278747 Msa0718900:CDS 20.0%
!! TGTTAACTATTTGATTCTTA+TGG - chr5_1:13278770-13278789 Msa0718900:intron 20.0%
!! GTTAACTATTTGATTCTTAT+GGG - chr5_1:13278771-13278790 Msa0718900:intron 20.0%
!! AATAAGAAGTGAAAAAAACA+AGG + chr5_1:13279101-13279120 None:intergenic 20.0%
!!! TTGTTTTTTTCACTTCTTAT+TGG - chr5_1:13279100-13279119 Msa0718900:CDS 20.0%
!! AAGTCTCATTATAAAATTAC+AGG + chr5_1:13279254-13279273 None:intergenic 20.0%
!!! GTAATTTTATAATGAGACTT+TGG - chr5_1:13279254-13279273 Msa0718900:CDS 20.0%
!! GACATAGTTTAATAAAAGTA+TGG + chr5_1:13279915-13279934 None:intergenic 20.0%
!! AGGATAATTAAAACAAACTA+TGG + chr5_1:13280018-13280037 None:intergenic 20.0%
!!! TAGTTTGTTTTAATTATCCT+AGG - chr5_1:13280018-13280037 Msa0718900:intron 20.0%
!!! AAAATTCAAAACACAACTTT+TGG - chr5_1:13280256-13280275 Msa0718900:CDS 20.0%
!!! TTATTTCGACATTTTTTTGT+CGG + chr5_1:13280333-13280352 None:intergenic 20.0%
!! AAAAAAATGTCGAAATAACT+AGG - chr5_1:13280335-13280354 Msa0718900:CDS 20.0%
!!! AATATTTTACTGTAGAGATT+TGG - chr5_1:13280736-13280755 Msa0718900:intron 20.0%
!!! GGTTACTTAAATTTAAAGTA+AGG - chr5_1:13281399-13281418 Msa0718900:intron 20.0%
!!! TTTAAAATAGAGAAGATTTC+AGG - chr5_1:13281436-13281455 Msa0718900:intron 20.0%
!! TTAAAATAGAGAAGATTTCA+GGG - chr5_1:13281437-13281456 Msa0718900:intron 20.0%
!!! GTTTTTGATAATGATAATGA+AGG - chr5_1:13282169-13282188 Msa0718900:intron 20.0%
!!! CAATAATACCATATTTTTGA+AGG - chr5_1:13282200-13282219 Msa0718900:intron 20.0%
!! AAATTTCTTACTATTTGGAT+AGG - chr5_1:13282323-13282342 Msa0718900:intron 20.0%
!! TTTGTCTCATATAAAATGTA+AGG - chr5_1:13282524-13282543 Msa0718900:intron 20.0%
!! TAATAAATTCCTATGTACTT+AGG + chr5_1:13282568-13282587 None:intergenic 20.0%
!! TCTAATTATTGAATGAACAA+AGG + chr5_1:13282775-13282794 None:intergenic 20.0%
!!! GATCGTTAATTTATTAGTTT+AGG - chr5_1:13283085-13283104 Msa0718900:intron 20.0%
!! TTCATAAAAAGGTAAACAAA+GGG + chr5_1:13283133-13283152 None:intergenic 20.0%
!! TTTCATAAAAAGGTAAACAA+AGG + chr5_1:13283134-13283153 None:intergenic 20.0%
!!! CACTTTAATGTTTTTTTTTC+TGG + chr5_1:13283219-13283238 None:intergenic 20.0%
!! CAGAAAAAAAAACATTAAAG+TGG - chr5_1:13283217-13283236 Msa0718900:intron 20.0%
!!! TCTAGCATACATTTTTATAA+AGG - chr5_1:13283643-13283662 Msa0718900:intron 20.0%
!!! AGTTGATACAAACTTTTATA+CGG + chr5_1:13283867-13283886 None:intergenic 20.0%
!! TAAATTATTTGCATTGCTAT+TGG + chr5_1:13283966-13283985 None:intergenic 20.0%
!! ATTATGTAACCAAAGTAATA+TGG - chr5_1:13284046-13284065 Msa0718900:intron 20.0%
!!! AATATATTCTTGCATTGTTT+TGG - chr5_1:13284153-13284172 Msa0718900:intron 20.0%
!!! ATATTTATGTTTTCCAAAAG+GGG + chr5_1:13284294-13284313 None:intergenic 20.0%
!!! AAAGTGTTTAACAATGAAAA+GGG - chr5_1:13284504-13284523 Msa0718900:intron 20.0%
!!! AATCATGTTAATTTTAGACT+AGG + chr5_1:13284890-13284909 None:intergenic 20.0%
!!! AAATTAACATGATTCGTTTT+AGG - chr5_1:13284896-13284915 Msa0718900:intron 20.0%
!!! TGACACTTTAAAAAAGATAA+AGG - chr5_1:13285084-13285103 Msa0718900:intron 20.0%
!!! ATAGTTTACTTTTTCTTAAC+TGG + chr5_1:13285394-13285413 None:intergenic 20.0%
!!! AAATAAGAAAGTTTTGTTCT+TGG - chr5_1:13285435-13285454 Msa0718900:intron 20.0%
!!! AAATTTAGCTATTCTAAGAA+AGG - chr5_1:13285590-13285609 Msa0718900:intron 20.0%
!! AATCACATATTAAGTGTATA+CGG + chr5_1:13286056-13286075 None:intergenic 20.0%
!! TATACACTTAATATGTGATT+TGG - chr5_1:13286056-13286075 Msa0718900:intron 20.0%
!! TGATAAACTTGAGTTATTAT+TGG - chr5_1:13286502-13286521 Msa0718900:intron 20.0%
!!! TAAATAATATCTCTGAAACT+TGG - chr5_1:13286990-13287009 Msa0718900:intron 20.0%
! CTATGAACAGTAACTAAATT+TGG + chr5_1:13278134-13278153 None:intergenic 25.0%
! CAAATTTAGTTACTGTTCAT+AGG - chr5_1:13278132-13278151 Msa0718900:three_prime_UTR 25.0%
! GATGAGAATAAAGTAATGTA+TGG + chr5_1:13278202-13278221 None:intergenic 25.0%
! CAGAACAGTAAAAAATATAC+TGG + chr5_1:13278588-13278607 None:intergenic 25.0%
!!! CAGTATATTTTTTACTGTTC+TGG - chr5_1:13278586-13278605 Msa0718900:CDS 25.0%
!! ATTTCGCTAAAAAAGCATAA+GGG + chr5_1:13278992-13279011 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr5_1:13279113-13279132 Msa0718900:CDS 25.0%
! CATTTCTCTATTAATTTAGG+TGG - chr5_1:13279228-13279247 Msa0718900:CDS 25.0%
! TTTAGATGAGAGAGAATAAA+TGG - chr5_1:13279415-13279434 Msa0718900:intron 25.0%
! AATAAATGGTTTAGAGAGAT+AGG - chr5_1:13279429-13279448 Msa0718900:intron 25.0%
! ATTGATCGCTACAAAATTAA+GGG + chr5_1:13279501-13279520 None:intergenic 25.0%
!!! TACTATATTTTGGACATTGT+TGG - chr5_1:13279750-13279769 Msa0718900:CDS 25.0%
!! TTTAATTATCCTAGGTGTTT+TGG - chr5_1:13280026-13280045 Msa0718900:intron 25.0%
!! TTAATTATCCTAGGTGTTTT+GGG - chr5_1:13280027-13280046 Msa0718900:intron 25.0%
! AAACACATTGTAATTGCATT+TGG - chr5_1:13280133-13280152 Msa0718900:CDS 25.0%
! AACACATTGTAATTGCATTT+GGG - chr5_1:13280134-13280153 Msa0718900:intron 25.0%
! TTGATCATAGTGACTAATAT+GGG + chr5_1:13280238-13280257 None:intergenic 25.0%
! TTTGATCATAGTGACTAATA+TGG + chr5_1:13280239-13280258 None:intergenic 25.0%
!!! CTAGTACTTTTTTTATTGAG+AGG + chr5_1:13280305-13280324 None:intergenic 25.0%
!! ATAGAAACAAAGAGTGTATA+TGG - chr5_1:13280524-13280543 Msa0718900:intron 25.0%
!!! ACAACTTATACCATTTTTGT+GGG + chr5_1:13280550-13280569 None:intergenic 25.0%
!!! AACAACTTATACCATTTTTG+TGG + chr5_1:13280551-13280570 None:intergenic 25.0%
! AAATGGTATAAGTTGTTCAT+AGG - chr5_1:13280554-13280573 Msa0718900:intron 25.0%
! ATAAATGTGTCCTACAATAA+AGG + chr5_1:13280912-13280931 None:intergenic 25.0%
! TTGACATTCAAAAAAGATAG+TGG - chr5_1:13281017-13281036 Msa0718900:CDS 25.0%
! TGATATACAATGAAATTCCA+TGG - chr5_1:13281086-13281105 Msa0718900:CDS 25.0%
!! TTTGGAATTTCTTGTATATG+AGG - chr5_1:13281166-13281185 Msa0718900:CDS 25.0%
! TTGGAATTTCTTGTATATGA+GGG - chr5_1:13281167-13281186 Msa0718900:CDS 25.0%
! TTGTAATGATATCCACAAAA+AGG - chr5_1:13281280-13281299 Msa0718900:intron 25.0%
!!! AGTGTGAAAGTTATTTTCAT+TGG + chr5_1:13281352-13281371 None:intergenic 25.0%
!! CAAAGATGTTTACTGTTTTA+AGG - chr5_1:13281621-13281640 Msa0718900:intron 25.0%
!!! TGTTTTAAGGATGAAAATGA+TGG - chr5_1:13281634-13281653 Msa0718900:intron 25.0%
! TATCATGTTAGATGTGATAT+GGG - chr5_1:13281711-13281730 Msa0718900:intron 25.0%
! TTGATTTATATGAAGCAAGT+AGG - chr5_1:13281744-13281763 Msa0718900:intron 25.0%
! AGGCATAATAAAAACACTAA+TGG + chr5_1:13281852-13281871 None:intergenic 25.0%
!!! TACTCACAAAATTTAGTTTG+TGG - chr5_1:13281916-13281935 Msa0718900:intron 25.0%
! GTAAATTAGTCCAATTGATA+AGG + chr5_1:13282135-13282154 None:intergenic 25.0%
! TTTAGTGTCCTTCAAAAATA+TGG + chr5_1:13282211-13282230 None:intergenic 25.0%
!! TTCAATTTTCCTAAGTACAT+AGG - chr5_1:13282556-13282575 Msa0718900:intron 25.0%
!!! AACAAAGGTATATTGATTTG+GGG + chr5_1:13282760-13282779 None:intergenic 25.0%
!!! GAACAAAGGTATATTGATTT+GGG + chr5_1:13282761-13282780 None:intergenic 25.0%
!! TGAACAAAGGTATATTGATT+TGG + chr5_1:13282762-13282781 None:intergenic 25.0%
! CATGTTAAAGATTCCATAAA+TGG - chr5_1:13283530-13283549 Msa0718900:intron 25.0%
!!! GTTTAGTCATATGCTATTTT+TGG - chr5_1:13284093-13284112 Msa0718900:intron 25.0%
!!! CTTAGTTTTATTTGTGTCAA+AGG - chr5_1:13284207-13284226 Msa0718900:intron 25.0%
!! ACTATGTTCTAGACTATATT+TGG - chr5_1:13284234-13284253 Msa0718900:intron 25.0%
!! TTTATATAATGGAACCTTTC+AGG - chr5_1:13284322-13284341 Msa0718900:intron 25.0%
! TATATGTCATAATTCCTGAA+AGG + chr5_1:13284339-13284358 None:intergenic 25.0%
! TCAGGAATTATGACATATAA+TGG - chr5_1:13284340-13284359 Msa0718900:intron 25.0%
!! CAAAGTGTTTAACAATGAAA+AGG - chr5_1:13284503-13284522 Msa0718900:intron 25.0%
!! AAATTTTCAAAGCTCTTACT+TGG - chr5_1:13284640-13284659 Msa0718900:intron 25.0%
! TTTAAAAACGTCAACATTGT+TGG - chr5_1:13284768-13284787 Msa0718900:intron 25.0%
! TAAGCTCTTGACTATTTAAA+AGG - chr5_1:13284802-13284821 Msa0718900:intron 25.0%
! ATGAACGTTGAATTATACTA+TGG + chr5_1:13284988-13285007 None:intergenic 25.0%
! GATCATATAAGTACATAGAT+TGG + chr5_1:13285193-13285212 None:intergenic 25.0%
!! CTTTCTTATTTAGTAGCAAA+GGG + chr5_1:13285426-13285445 None:intergenic 25.0%
!! ACTTTCTTATTTAGTAGCAA+AGG + chr5_1:13285427-13285446 None:intergenic 25.0%
! ATCTTTACTAGCAACATATT+AGG - chr5_1:13285656-13285675 Msa0718900:intron 25.0%
!! TATTTGGATTATTTGTTGAC+AGG - chr5_1:13285697-13285716 Msa0718900:intron 25.0%
!! CACATTTTCATTGATAGATT+TGG + chr5_1:13285921-13285940 None:intergenic 25.0%
! AATAAATTCTAATGCATCGA+AGG - chr5_1:13286023-13286042 Msa0718900:intron 25.0%
!!! TTAATATGTGATTTGGTTCT+TGG - chr5_1:13286063-13286082 Msa0718900:intron 25.0%
! TGACTATTTGATTATAACCT+AGG - chr5_1:13286146-13286165 Msa0718900:intron 25.0%
! CAATTTATTAATGGTCTCAA+GGG + chr5_1:13286378-13286397 None:intergenic 25.0%
! AACAGCTTCCAATTTATTAA+TGG + chr5_1:13286387-13286406 None:intergenic 25.0%
!! TTGGTTTCTTTAGTTTAGAA+AGG + chr5_1:13286690-13286709 None:intergenic 25.0%
!! TTGGTTTCTTTAGTTTAGAA+AGG + chr5_1:13286690-13286709 None:intergenic 25.0%
!!! AAATTGGTTTGATTAACTGT+TGG + chr5_1:13286761-13286780 None:intergenic 25.0%
! AATAGGAGATATATTACAAG+AGG - chr5_1:13286925-13286944 Msa0718900:intron 25.0%
! AGAGATATTATTTATTCCAG+GGG + chr5_1:13286984-13287003 None:intergenic 25.0%
! CAGAGATATTATTTATTCCA+GGG + chr5_1:13286985-13287004 None:intergenic 25.0%
! TCAGAGATATTATTTATTCC+AGG + chr5_1:13286986-13287005 None:intergenic 25.0%
!!! TTTGTTCATCTTTTGAAGTA+AGG + chr5_1:13287041-13287060 None:intergenic 25.0%
ATAAGAATATAGAGAGAGGA+AGG + chr5_1:13278163-13278182 None:intergenic 30.0%
GGATATAAGAATATAGAGAG+AGG + chr5_1:13278167-13278186 None:intergenic 30.0%
GAGAATAAAGTAATGTATGG+AGG + chr5_1:13278199-13278218 None:intergenic 30.0%
TTATGCAGTGAAAAGTTCAA+TGG + chr5_1:13278322-13278341 None:intergenic 30.0%
TCAAAAGTAAATGAGGATGA+AGG + chr5_1:13278507-13278526 None:intergenic 30.0%
ATTCATAGACGGGAAAAAAA+AGG + chr5_1:13278681-13278700 None:intergenic 30.0%
! TGGGTATGATCAATTCTTTT+TGG - chr5_1:13278747-13278766 Msa0718900:intron 30.0%
! TTTTACTTTAATCGTGCTCA+TGG - chr5_1:13278951-13278970 Msa0718900:intron 30.0%
! CATTTCGCTAAAAAAGCATA+AGG + chr5_1:13278993-13279012 None:intergenic 30.0%
TCGTATATGTTACAAACGTA+TGG - chr5_1:13279015-13279034 Msa0718900:CDS 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr5_1:13279075-13279094 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr5_1:13279198-13279217 None:intergenic 30.0%
! TCCTTGGTGATTAATTGATT+TGG - chr5_1:13279281-13279300 Msa0718900:CDS 30.0%
TCCAAATCAATTAATCACCA+AGG + chr5_1:13279285-13279304 None:intergenic 30.0%
!! TGGTGATTAATTGATTTGGA+CGG - chr5_1:13279285-13279304 Msa0718900:CDS 30.0%
TTGATCGCTACAAAATTAAG+GGG + chr5_1:13279500-13279519 None:intergenic 30.0%
CATTGATCGCTACAAAATTA+AGG + chr5_1:13279502-13279521 None:intergenic 30.0%
! CTTAATTTTGTAGCGATCAA+TGG - chr5_1:13279500-13279519 Msa0718900:intron 30.0%
GTACGTGAAATTAAATGCTT+AGG - chr5_1:13279598-13279617 Msa0718900:intron 30.0%
TTCGACATAAATGTATACTG+AGG + chr5_1:13279657-13279676 None:intergenic 30.0%
TGTCGAAATTTCATAAAGTG+TGG - chr5_1:13279670-13279689 Msa0718900:CDS 30.0%
GTCGAAATTTCATAAAGTGT+GGG - chr5_1:13279671-13279690 Msa0718900:CDS 30.0%
TCACTTTAACAAATGTACTG+TGG + chr5_1:13279805-13279824 None:intergenic 30.0%
! GAGATGTTTAGAATGAAGAA+AGG - chr5_1:13279827-13279846 Msa0718900:CDS 30.0%
ATAGCTCATAGCATATTAGT+CGG - chr5_1:13280059-13280078 Msa0718900:intron 30.0%
!! TTCTATCTTGGTGTCATTAA+TGG - chr5_1:13280168-13280187 Msa0718900:intron 30.0%
! TTTTATTGAGAGGTTGAGAT+AGG + chr5_1:13280295-13280314 None:intergenic 30.0%
GAATCTACCGTATATACATA+CGG + chr5_1:13280466-13280485 None:intergenic 30.0%
CACATGAAAAGTTGGAAAAA+TGG + chr5_1:13280488-13280507 None:intergenic 30.0%
! GTTCATAGGTTGTCATATTT+TGG - chr5_1:13280568-13280587 Msa0718900:intron 30.0%
GTTGCATAAAACAATAGTGA+AGG + chr5_1:13280980-13280999 None:intergenic 30.0%
GTGGTCTCAACATAAAAAAA+AGG - chr5_1:13281036-13281055 Msa0718900:CDS 30.0%
ATTTCTTGTATATGAGGGAA+TGG - chr5_1:13281172-13281191 Msa0718900:CDS 30.0%
TACAAATTTGCGAGATAAAG+AGG - chr5_1:13281513-13281532 Msa0718900:intron 30.0%
TTGAAGAGTGATGACATTTA+TGG + chr5_1:13281604-13281623 None:intergenic 30.0%
TCACATCTAACATGATAGAA+CGG + chr5_1:13281708-13281727 None:intergenic 30.0%
CTATCATGTTAGATGTGATA+TGG - chr5_1:13281710-13281729 Msa0718900:intron 30.0%
ATTTATATGAAGCAAGTAGG+AGG - chr5_1:13281747-13281766 Msa0718900:intron 30.0%
TGTTTCAAATCACAATCTGA+AGG - chr5_1:13281792-13281811 Msa0718900:intron 30.0%
!! TTTTGTGAGTATCTTTGAGA+AGG + chr5_1:13281907-13281926 None:intergenic 30.0%
ATGATTCAATAGTAGAGATC+AGG + chr5_1:13282054-13282073 None:intergenic 30.0%
GATCTCTACTATTGAATCAT+TGG - chr5_1:13282054-13282073 Msa0718900:intron 30.0%
! GATTTAGCTCATATCTAACA+AGG + chr5_1:13282113-13282132 None:intergenic 30.0%
TGAGCTAAATCCTTATCAAT+TGG - chr5_1:13282122-13282141 Msa0718900:intron 30.0%
ACTCAAATTCATGTTGAGAT+AGG - chr5_1:13282272-13282291 Msa0718900:intron 30.0%
! ATTTTCCAAAACATAACAGC+AGG - chr5_1:13282709-13282728 Msa0718900:intron 30.0%
AAAAAGGTAAACAAAGGGAA+AGG + chr5_1:13283128-13283147 None:intergenic 30.0%
CTTTAGTGTTTATAAGCTCA+TGG - chr5_1:13283255-13283274 Msa0718900:intron 30.0%
ATCTGTACTAACGTACTAAT+CGG - chr5_1:13283399-13283418 Msa0718900:intron 30.0%
ATTATGAGTCATGCTAACTA+AGG - chr5_1:13283504-13283523 Msa0718900:intron 30.0%
TTATGAGTCATGCTAACTAA+GGG - chr5_1:13283505-13283524 Msa0718900:intron 30.0%
TACAAAACATTGTCCTCTAA+AGG - chr5_1:13283564-13283583 Msa0718900:intron 30.0%
CATATTGATGTACTATTGCT+AGG + chr5_1:13283797-13283816 None:intergenic 30.0%
ATTCTATCACATCTCTATCA+CGG + chr5_1:13283909-13283928 None:intergenic 30.0%
AAGAATATATTCTCTGCTGT+TGG + chr5_1:13284144-13284163 None:intergenic 30.0%
! CATTTAAGTATAACCCCTTT+TGG - chr5_1:13284278-13284297 Msa0718900:intron 30.0%
! TGTTTAGAATGCAACTTTCA+AGG + chr5_1:13284366-13284385 None:intergenic 30.0%
! AAACAATCAGTCTTATGAAG+AGG - chr5_1:13284381-13284400 Msa0718900:intron 30.0%
ATCATCGTCATCAAATGAAT+CGG + chr5_1:13284440-13284459 None:intergenic 30.0%
TCTTTGACGTAAAAATGTTG+AGG + chr5_1:13284571-13284590 None:intergenic 30.0%
TAGCTTCAATATCTGAATGT+TGG + chr5_1:13284612-13284631 None:intergenic 30.0%
TTCAGATATTGAAGCTATGA+AGG - chr5_1:13284615-13284634 Msa0718900:intron 30.0%
AGTCAAGAGCTTAGAAAATT+CGG + chr5_1:13284795-13284814 None:intergenic 30.0%
! TCATACACAGTTACTGTTTT+TGG - chr5_1:13285211-13285230 Msa0718900:intron 30.0%
TGTAGAAAACAAATGACAGA+AGG + chr5_1:13285616-13285635 None:intergenic 30.0%
TTTAAGCAATAACAAGTCCT+AGG + chr5_1:13286166-13286185 None:intergenic 30.0%
TTAAAGCAAATCACAATCAC+AGG - chr5_1:13286181-13286200 Msa0718900:intron 30.0%
TAAAGCAAATCACAATCACA+GGG - chr5_1:13286182-13286201 Msa0718900:intron 30.0%
! CAATTTGAAATCCGAACATA+TGG - chr5_1:13286352-13286371 Msa0718900:intron 30.0%
CCAATTTATTAATGGTCTCA+AGG + chr5_1:13286379-13286398 None:intergenic 30.0%
CCTTGAGACCATTAATAAAT+TGG - chr5_1:13286376-13286395 Msa0718900:intron 30.0%
AGAAATGTTTGAGGAAGATT+GGG + chr5_1:13286569-13286588 None:intergenic 30.0%
AAGAAATGTTTGAGGAAGAT+TGG + chr5_1:13286570-13286589 None:intergenic 30.0%
!! AAATTGGCTTGATTAACTGT+TGG + chr5_1:13286709-13286728 None:intergenic 30.0%
!! AAACCAATTTGTTGTACATG+TGG - chr5_1:13286771-13286790 Msa0718900:intron 30.0%
TTGTTATCTCTGTAGGATAT+TGG - chr5_1:13286839-13286858 Msa0718900:intron 30.0%
TATTCTAGACAATATGCTGA+AGG + chr5_1:13286909-13286928 None:intergenic 30.0%
! TTCAGCATATTGTCTAGAAT+AGG - chr5_1:13286908-13286927 Msa0718900:intron 30.0%
!! TAATATCTCTGAAACTTGGA+TGG - chr5_1:13286994-13287013 Msa0718900:intron 30.0%
TGTAGCTATTATCACATCTT+GGG + chr5_1:13287125-13287144 None:intergenic 30.0%
CTAATAACCCAAAAACTATG+AGG + chr5_1:13287305-13287324 None:intergenic 30.0%
GTTCTTTATTGACAATGAAG+AGG - chr5_1:13287332-13287351 Msa0718900:five_prime_UTR 30.0%
AATGTATGGAGGAAGAAGAA+TGG + chr5_1:13278188-13278207 None:intergenic 35.0%
CAAGCTTAAGCATATAGCAA+TGG + chr5_1:13278293-13278312 None:intergenic 35.0%
AGTGAAAAGTTCAATGGTGA+TGG + chr5_1:13278316-13278335 None:intergenic 35.0%
CTGCATAACAATGCAATCTA+AGG - chr5_1:13278334-13278353 Msa0718900:three_prime_UTR 35.0%
AGGTAATAGTGCACAACAAA+AGG + chr5_1:13278661-13278680 None:intergenic 35.0%
AGAGAGAAAAAGAAAGAGAG+AGG - chr5_1:13279136-13279155 Msa0718900:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr5_1:13279193-13279212 Msa0718900:CDS 35.0%
! GACGGAGATACCTTAATTTT+GGG - chr5_1:13279303-13279322 Msa0718900:CDS 35.0%
!! TCTCTCTCCTTTAAAATGCA+AGG + chr5_1:13279367-13279386 None:intergenic 35.0%
GTTTAGAGAGATAGGAACAA+AGG - chr5_1:13279437-13279456 Msa0718900:intron 35.0%
TGATCGCTACAAAATTAAGG+GGG + chr5_1:13279499-13279518 None:intergenic 35.0%
ATTAGTACATGAACGTGACT+TGG - chr5_1:13279576-13279595 Msa0718900:intron 35.0%
AACACAATACTGTGACATTG+TGG - chr5_1:13279621-13279640 Msa0718900:intron 35.0%
ATGTATACTGAGGAAACCAT+GGG + chr5_1:13279647-13279666 None:intergenic 35.0%
AATGTATACTGAGGAAACCA+TGG + chr5_1:13279648-13279667 None:intergenic 35.0%
!! ATTTTGGACATTGTTGGTGA+AGG - chr5_1:13279756-13279775 Msa0718900:CDS 35.0%
AAAGTATGGACTTACTCTCT+TGG + chr5_1:13279901-13279920 None:intergenic 35.0%
TAGCTCATAGCATATTAGTC+GGG - chr5_1:13280060-13280079 Msa0718900:intron 35.0%
GCAATTACAATGTGTTTGTG+TGG + chr5_1:13280130-13280149 None:intergenic 35.0%
CATTAATGGCCCAGATTTAA+TGG - chr5_1:13280182-13280201 Msa0718900:intron 35.0%
AATAACTAGGTCAAACACTG+TGG - chr5_1:13280348-13280367 Msa0718900:CDS 35.0%
CATCACACCGTATGTATATA+CGG - chr5_1:13280456-13280475 Msa0718900:intron 35.0%
! TTCCAACTTTTCATGTGTCT+TGG - chr5_1:13280491-13280510 Msa0718900:intron 35.0%
TTCCAAGACACATGAAAAGT+TGG + chr5_1:13280496-13280515 None:intergenic 35.0%
! TTTTCATGTGTCTTGGAATG+CGG - chr5_1:13280498-13280517 Msa0718900:intron 35.0%
AGCATCGTATATTCCAATGT+AGG + chr5_1:13280766-13280785 None:intergenic 35.0%
TCCTTACTTTCTCTTCTCTA+TGG - chr5_1:13280800-13280819 Msa0718900:intron 35.0%
ACCATAGAGAAGAGAAAGTA+AGG + chr5_1:13280804-13280823 None:intergenic 35.0%
AACATAGAGAGAAGTAGCTA+TGG + chr5_1:13280840-13280859 None:intergenic 35.0%
TTGAGCAAGTCCTTTATTGT+AGG - chr5_1:13280899-13280918 Msa0718900:CDS 35.0%
!! GGAATGGATAATTGAGTTGA+AGG - chr5_1:13281188-13281207 Msa0718900:CDS 35.0%
!! GGATAATTGAGTTGAAGGAT+TGG - chr5_1:13281193-13281212 Msa0718900:CDS 35.0%
! ATCTTAAGGAGTCCTTTTTG+TGG + chr5_1:13281295-13281314 None:intergenic 35.0%
GGCAAACAATTCTCATCTTA+AGG + chr5_1:13281309-13281328 None:intergenic 35.0%
AGATGAGAATTGTTTGCCAA+TGG - chr5_1:13281311-13281330 Msa0718900:intron 35.0%
! TCATTTCCTATCAACCGTTT+TGG - chr5_1:13281378-13281397 Msa0718900:intron 35.0%
AAGTAACCAAAACGGTTGAT+AGG + chr5_1:13281387-13281406 None:intergenic 35.0%
TGACATTTATGGCGAATAGA+TGG + chr5_1:13281593-13281612 None:intergenic 35.0%
TTCAAATCACAATCTGAAGG+TGG - chr5_1:13281795-13281814 Msa0718900:intron 35.0%
ACATTAACAAGACGTGTTTG+TGG - chr5_1:13281822-13281841 Msa0718900:intron 35.0%
AAGTAAAACGGGTAGTAGTT+AGG + chr5_1:13281872-13281891 None:intergenic 35.0%
!! TTTAGTTTGTGGCTTCATTG+TGG - chr5_1:13281927-13281946 Msa0718900:intron 35.0%
!! TTAGTTTGTGGCTTCATTGT+GGG - chr5_1:13281928-13281947 Msa0718900:intron 35.0%
!!! CGATTTGGGTTTTAAAACAC+CGG + chr5_1:13281958-13281977 None:intergenic 35.0%
!!! CGGTGTTTTAAAACCCAAAT+CGG - chr5_1:13281956-13281975 Msa0718900:intron 35.0%
!! ATCAGATCAATCACCGATTT+GGG + chr5_1:13281972-13281991 None:intergenic 35.0%
CTCATATCTAACAAGGACAT+GGG + chr5_1:13282106-13282125 None:intergenic 35.0%
AAAGAACAAAAGAGCCAAGA+AGG + chr5_1:13282374-13282393 None:intergenic 35.0%
GTTCTATCTTATCATAGCCT+CGG - chr5_1:13282478-13282497 Msa0718900:intron 35.0%
! CTTTACCTGCTGTTATGTTT+TGG + chr5_1:13282717-13282736 None:intergenic 35.0%
TAGTCACGTGCAAGTATTAT+TGG + chr5_1:13283471-13283490 None:intergenic 35.0%
! ATGCTAACTTGTACCTTTAG+AGG + chr5_1:13283580-13283599 None:intergenic 35.0%
GAGATATGCTTGACATTGTT+TGG - chr5_1:13283838-13283857 Msa0718900:intron 35.0%
GCTATTGGCAAATACTCAAA+TGG + chr5_1:13283951-13283970 None:intergenic 35.0%
TAGCATATGACTAAACAGCA+TGG + chr5_1:13284089-13284108 None:intergenic 35.0%
GTTGGACAAATAACATATGC+AGG + chr5_1:13284126-13284145 None:intergenic 35.0%
!!! TTGTTTTGGTATTGACAGCA+AGG - chr5_1:13284167-13284186 Msa0718900:intron 35.0%
ATGAAAAGGGAAGATGAACA+AGG - chr5_1:13284517-13284536 Msa0718900:intron 35.0%
ATGAACAAGGACTTGAAGAA+TGG - chr5_1:13284530-13284549 Msa0718900:intron 35.0%
TGAACAAGGACTTGAAGAAT+GGG - chr5_1:13284531-13284550 Msa0718900:intron 35.0%
GAATGTTGGATTGCATAAGA+AGG + chr5_1:13284598-13284617 None:intergenic 35.0%
! TTACTTGGTGAAGATGTTAC+TGG - chr5_1:13284655-13284674 Msa0718900:intron 35.0%
!! CAACGACTAAGTTGATAAGA+AGG + chr5_1:13284745-13284764 None:intergenic 35.0%
GAACAGAGAATGAAGTTGAA+CGG - chr5_1:13285031-13285050 Msa0718900:intron 35.0%
GCAATATTCAACATCGAACT+TGG + chr5_1:13285111-13285130 None:intergenic 35.0%
!!! TTACTGTTTTTGGTGAGCTA+TGG - chr5_1:13285221-13285240 Msa0718900:intron 35.0%
! TTTTGGTGAGCTATGGAAAT+TGG - chr5_1:13285228-13285247 Msa0718900:intron 35.0%
CTCTTTCTTTCTTCAGATAG+AGG + chr5_1:13285256-13285275 None:intergenic 35.0%
CTGAAGAAAGAAAGAGCAAA+TGG - chr5_1:13285260-13285279 Msa0718900:intron 35.0%
ACTGTCTCCTACAAACTATA+TGG - chr5_1:13285303-13285322 Msa0718900:intron 35.0%
! AGCTCAACCATATAGTTTGT+AGG + chr5_1:13285313-13285332 None:intergenic 35.0%
TACCTCAAAGATTCTACCAT+TGG + chr5_1:13285359-13285378 None:intergenic 35.0%
GCTAAGTGCAACATCTTATT+TGG - chr5_1:13285681-13285700 Msa0718900:intron 35.0%
! CAATGGTGAAAACAGAGTTT+TGG - chr5_1:13285732-13285751 Msa0718900:CDS 35.0%
!! GTGAAAACAGAGTTTTGGTA+TGG - chr5_1:13285737-13285756 Msa0718900:CDS 35.0%
! GTATCAGAAAGACCAGTTTT+TGG + chr5_1:13285842-13285861 None:intergenic 35.0%
AGTGCATCTCTAATAACTGT+TGG + chr5_1:13285962-13285981 None:intergenic 35.0%
TATTAGAGATGCACTTGCAA+AGG - chr5_1:13285967-13285986 Msa0718900:intron 35.0%
AGAACTATGGAACAAGTTAC+TGG - chr5_1:13286425-13286444 Msa0718900:intron 35.0%
! AACTTCATGGTCTTTTGTGA+AGG - chr5_1:13286463-13286482 Msa0718900:intron 35.0%
! ACTTCATGGTCTTTTGTGAA+GGG - chr5_1:13286464-13286483 Msa0718900:intron 35.0%
GTTTATCAGCTTCTGACATA+GGG + chr5_1:13286490-13286509 None:intergenic 35.0%
AGTTTATCAGCTTCTGACAT+AGG + chr5_1:13286491-13286510 None:intergenic 35.0%
GATGCTGCTAAAGTTCAATA+TGG - chr5_1:13286590-13286609 Msa0718900:intron 35.0%
TGCTAAAGTTCAATATGGCA+AGG - chr5_1:13286595-13286614 Msa0718900:intron 35.0%
GAAAGGCTCGAATAACAAAT+TGG + chr5_1:13286725-13286744 None:intergenic 35.0%
AATCACATTACCACTGAACT+AGG + chr5_1:13286810-13286829 None:intergenic 35.0%
! AGTTCAGTGGTAATGTGATT+TGG - chr5_1:13286810-13286829 Msa0718900:intron 35.0%
GTGTATGTTGTTATCTCTGT+AGG - chr5_1:13286832-13286851 Msa0718900:intron 35.0%
CAAAAGATGAACAAAGCAGA+TGG - chr5_1:13287046-13287065 Msa0718900:intron 35.0%
GTGTAGCTATTATCACATCT+TGG + chr5_1:13287126-13287145 None:intergenic 35.0%
! TTTGCCTCCTCATAGTTTTT+GGG - chr5_1:13287295-13287314 Msa0718900:five_prime_UTR 35.0%
ATAACCCAAAAACTATGAGG+AGG + chr5_1:13287302-13287321 None:intergenic 35.0%
!! GTTCTGGTTTCAGACTCTTT+CGG - chr5_1:13278602-13278621 Msa0718900:CDS 40.0%
! GGACGGAGATACCTTAATTT+TGG - chr5_1:13279302-13279321 Msa0718900:CDS 40.0%
! GGAGATACCTTAATTTTGGG+TGG - chr5_1:13279306-13279325 Msa0718900:CDS 40.0%
!! CTTAATTTTGGGTGGCACTT+GGG - chr5_1:13279314-13279333 Msa0718900:CDS 40.0%
!!! TTCGGTGCCTTGCATTTTAA+AGG - chr5_1:13279357-13279376 Msa0718900:intron 40.0%
!! AAAATTAAGGGGGAGCACTT+CGG + chr5_1:13279489-13279508 None:intergenic 40.0%
TGTAACATCCCAAAACACCT+AGG + chr5_1:13280038-13280057 None:intergenic 40.0%
ATATTAGTCGGGTAGCACTT+TGG - chr5_1:13280071-13280090 Msa0718900:intron 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG - chr5_1:13280083-13280102 Msa0718900:CDS 40.0%
TTTGTGTGGCCCAGATTTAA+TGG + chr5_1:13280116-13280135 None:intergenic 40.0%
!! ACCAAGATAGAAGTGTTGTG+TGG + chr5_1:13280160-13280179 None:intergenic 40.0%
GACTAATATGGGTAGCACTT+CGG + chr5_1:13280227-13280246 None:intergenic 40.0%
ATACGGTGTGATGACAACTT+TGG + chr5_1:13280449-13280468 None:intergenic 40.0%
TTTCATGTGTCTTGGAATGC+GGG - chr5_1:13280499-13280518 Msa0718900:intron 40.0%
GTGTATATGGCCCACAAAAA+TGG - chr5_1:13280537-13280556 Msa0718900:intron 40.0%
CTATTTATGACTCGTGAGGT+AGG + chr5_1:13280949-13280968 None:intergenic 40.0%
CTACCTCACGAGTCATAAAT+AGG - chr5_1:13280947-13280966 Msa0718900:CDS 40.0%
ATGCCTATTTATGACTCGTG+AGG + chr5_1:13280953-13280972 None:intergenic 40.0%
GAATGTCAAGTTCATGTGCT+TGG + chr5_1:13281006-13281025 None:intergenic 40.0%
AGGATTGGATCTTGATGAGT+AGG - chr5_1:13281208-13281227 Msa0718900:CDS 40.0%
GGATTGGATCTTGATGAGTA+GGG - chr5_1:13281209-13281228 Msa0718900:CDS 40.0%
! ATGGTTAGCCCTAAAGACAA+AGG - chr5_1:13281653-13281672 Msa0718900:intron 40.0%
! TGGTTAGCCCTAAAGACAAA+GGG - chr5_1:13281654-13281673 Msa0718900:intron 40.0%
GATTCCACCCTTTGTCTTTA+GGG + chr5_1:13281664-13281683 None:intergenic 40.0%
ACATGATAGAACGGAGCTAA+CGG + chr5_1:13281699-13281718 None:intergenic 40.0%
TGTTAGATGTGATATGGGTG+TGG - chr5_1:13281716-13281735 Msa0718900:intron 40.0%
!! AAGTAGGAGGTTGATGTGTA+AGG - chr5_1:13281760-13281779 Msa0718900:intron 40.0%
TTAACAAGACGTGTTTGTGG+TGG - chr5_1:13281825-13281844 Msa0718900:intron 40.0%
ACCATGGAGTGGAAGTAAAA+CGG + chr5_1:13281884-13281903 None:intergenic 40.0%
! AGTATCTTTGAGAAGGACCA+TGG + chr5_1:13281900-13281919 None:intergenic 40.0%
! TAGTTTGTGGCTTCATTGTG+GGG - chr5_1:13281929-13281948 Msa0718900:intron 40.0%
! GATCAGATCAATCACCGATT+TGG + chr5_1:13281973-13281992 None:intergenic 40.0%
GATTGATCTGATCAAGACAC+TGG - chr5_1:13281980-13281999 Msa0718900:intron 40.0%
TGATCAAGACACTGGATTAC+TGG - chr5_1:13281988-13282007 Msa0718900:intron 40.0%
!! TGGTTGGATTGGTGAATCAT+TGG - chr5_1:13282008-13282027 Msa0718900:intron 40.0%
GCTCATATCTAACAAGGACA+TGG + chr5_1:13282107-13282126 None:intergenic 40.0%
! ATTTGGATAGGACCCTTTTG+TGG - chr5_1:13282335-13282354 Msa0718900:intron 40.0%
! TTTGGATAGGACCCTTTTGT+GGG - chr5_1:13282336-13282355 Msa0718900:intron 40.0%
!! GAGACAAAGTTTTGACGACA+CGG + chr5_1:13282512-13282531 None:intergenic 40.0%
TCTTCAAGCAAAGATGCGTT+TGG - chr5_1:13284469-13284488 Msa0718900:intron 40.0%
AGATGTTACTGGAGGAACTA+AGG - chr5_1:13284666-13284685 Msa0718900:intron 40.0%
GATGTTACTGGAGGAACTAA+GGG - chr5_1:13284667-13284686 Msa0718900:intron 40.0%
AATGCCATCACAAACTTGTC+AGG - chr5_1:13284715-13284734 Msa0718900:intron 40.0%
CATACCTGACAAGTTTGTGA+TGG + chr5_1:13284722-13284741 None:intergenic 40.0%
TTGACTACGAGTGTCTAATG+TGG - chr5_1:13284941-13284960 Msa0718900:intron 40.0%
!! TTGGCATTGTTTTGCTTAGC+AGG + chr5_1:13285340-13285359 None:intergenic 40.0%
GCTAAGCAAAACAATGCCAA+TGG - chr5_1:13285340-13285359 Msa0718900:intron 40.0%
TGCCAATGGTAGAATCTTTG+AGG - chr5_1:13285354-13285373 Msa0718900:intron 40.0%
TAAGCATAGAGTCCAACTTC+TGG + chr5_1:13285516-13285535 None:intergenic 40.0%
ACAGGATGCACTTGATTCAA+TGG - chr5_1:13285715-13285734 Msa0718900:CDS 40.0%
!! AACAGAGTTTTGGTATGGTG+AGG - chr5_1:13285742-13285761 Msa0718900:CDS 40.0%
!! ACAGAGTTTTGGTATGGTGA+GGG - chr5_1:13285743-13285762 Msa0718900:CDS 40.0%
!!! GTTTTTGGTACTTGAGGTGA+TGG + chr5_1:13285827-13285846 None:intergenic 40.0%
TCACCTCAAGTACCAAAAAC+TGG - chr5_1:13285827-13285846 Msa0718900:intron 40.0%
!!! AGACCAGTTTTTGGTACTTG+AGG + chr5_1:13285833-13285852 None:intergenic 40.0%
TTTCTGATACCGCAAGAAAG+AGG - chr5_1:13285852-13285871 Msa0718900:intron 40.0%
ATGAACCAACCTCTTTCTTG+CGG + chr5_1:13285864-13285883 None:intergenic 40.0%
! AAGAAAGAGGTTGGTTCATC+AGG - chr5_1:13285865-13285884 Msa0718900:intron 40.0%
! AGAAAGAGGTTGGTTCATCA+GGG - chr5_1:13285866-13285885 Msa0718900:intron 40.0%
ATTTGGCAGCCTTGAATACT+TGG + chr5_1:13285904-13285923 None:intergenic 40.0%
TCTCTAATAACTGTTGGCAC+AGG + chr5_1:13285956-13285975 None:intergenic 40.0%
GAATGTTCTATGTTGCAGTC+TGG - chr5_1:13286251-13286270 Msa0718900:intron 40.0%
TTCTATGTTGCAGTCTGGAA+AGG - chr5_1:13286256-13286275 Msa0718900:intron 40.0%
TTGACAGCTGAATCAACTTC+TGG - chr5_1:13286308-13286327 Msa0718900:intron 40.0%
CTCGTTGAAAGAGAGAACTA+TGG - chr5_1:13286412-13286431 Msa0718900:intron 40.0%
ACAAGTTACTGGCAAATCAC+CGG - chr5_1:13286436-13286455 Msa0718900:intron 40.0%
AAAGACCATGAAGTTCGAAC+CGG + chr5_1:13286458-13286477 None:intergenic 40.0%
!! GCTGTAAAAGTGTTTCAGCA+CGG + chr5_1:13286529-13286548 None:intergenic 40.0%
GCAGCATCAAGAAATGTTTG+AGG + chr5_1:13286578-13286597 None:intergenic 40.0%
TAGAAAGGCTCGAATGTAGA+TGG + chr5_1:13286675-13286694 None:intergenic 40.0%
TGGCCACATGTACAACAAAT+TGG + chr5_1:13286777-13286796 None:intergenic 40.0%
TGTACATGTGGCCAAAAAGT+TGG - chr5_1:13286783-13286802 Msa0718900:intron 40.0%
! CTGAACTAGGACCAACTTTT+TGG + chr5_1:13286797-13286816 None:intergenic 40.0%
! AAAAGTTGGTCCTAGTTCAG+TGG - chr5_1:13286797-13286816 Msa0718900:intron 40.0%
GGATATTGGACATTCCATTC+TGG - chr5_1:13286853-13286872 Msa0718900:intron 40.0%
GGCTAAATTTCCAAGAACTC+TGG + chr5_1:13286888-13286907 None:intergenic 40.0%
!! TATCTCTGAAACTTGGATGG+TGG - chr5_1:13286997-13287016 Msa0718900:intron 40.0%
TGATAATAGCTACACCAAGC+AGG - chr5_1:13287131-13287150 Msa0718900:intron 40.0%
! GTTTGCCTCCTCATAGTTTT+TGG - chr5_1:13287294-13287313 Msa0718900:five_prime_UTR 40.0%
ATGAGACTTTGGGCTATCCT+TGG - chr5_1:13279265-13279284 Msa0718900:CDS 45.0%
CCAAGTGCCACCCAAAATTA+AGG + chr5_1:13279316-13279335 None:intergenic 45.0%
!! CCTTAATTTTGGGTGGCACT+TGG - chr5_1:13279313-13279332 Msa0718900:CDS 45.0%
!! CCTTTGCTTTTGGTGGCTTT+CGG - chr5_1:13279339-13279358 Msa0718900:intron 45.0%
! GATAGGAACAAAGGCACGAA+AGG - chr5_1:13279446-13279465 Msa0718900:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr5_1:13280199-13280218 None:intergenic 45.0%
GCCACACAACACTTCTATCT+TGG - chr5_1:13280156-13280175 Msa0718900:intron 45.0%
ATGGCCCAGATTTAATGGCA+CGG - chr5_1:13280187-13280206 Msa0718900:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - chr5_1:13280199-13280218 Msa0718900:intron 45.0%
!! TAGCACTTCGGTGCCATTAA+TGG + chr5_1:13280215-13280234 None:intergenic 45.0%
GAGATTTGGCATGCCTACAT+TGG - chr5_1:13280750-13280769 Msa0718900:intron 45.0%
!! TGCCAATGGATTGTAGCTAG+TGG - chr5_1:13281325-13281344 Msa0718900:intron 45.0%
GACCACTAGCTACAATCCAT+TGG + chr5_1:13281330-13281349 None:intergenic 45.0%
TTAGCCCTAAAGACAAAGGG+TGG - chr5_1:13281657-13281676 Msa0718900:intron 45.0%
GGATTCCACCCTTTGTCTTT+AGG + chr5_1:13281665-13281684 None:intergenic 45.0%
!! GAGCTAACGGTTCAAGTTGT+GGG + chr5_1:13281686-13281705 None:intergenic 45.0%
CCATGGAGTGGAAGTAAAAC+GGG + chr5_1:13281883-13281902 None:intergenic 45.0%
CAAGACACTGGATTACTGGT+TGG - chr5_1:13281992-13282011 Msa0718900:intron 45.0%
! CACTGGATTACTGGTTGGAT+TGG - chr5_1:13281997-13282016 Msa0718900:intron 45.0%
GAAGCGTAAGATAGTTGACC+TGG - chr5_1:13282079-13282098 Msa0718900:intron 45.0%
! TTGGATAGGACCCTTTTGTG+GGG - chr5_1:13282337-13282356 Msa0718900:intron 45.0%
TACTTGCACGTGACTATACG+TGG - chr5_1:13283475-13283494 Msa0718900:intron 45.0%
GAGGAAAGCAGAACAAGTAG+AGG - chr5_1:13284400-13284419 Msa0718900:intron 45.0%
AGCAGAACAAGTAGAGGAGA+CGG - chr5_1:13284406-13284425 Msa0718900:intron 45.0%
CTTGGTGAAGATGTTACTGG+AGG - chr5_1:13284658-13284677 Msa0718900:intron 45.0%
!! TAAGGGCATCACTACAGCTT+TGG - chr5_1:13284684-13284703 Msa0718900:intron 45.0%
GAGCAAATGGCGAAGAGAAA+TGG - chr5_1:13285273-13285292 Msa0718900:intron 45.0%
AATGGCGAAGAGAAATGGAC+TGG - chr5_1:13285278-13285297 Msa0718900:intron 45.0%
TGAATGTCTGCACGAGCTTT+AGG + chr5_1:13285475-13285494 None:intergenic 45.0%
CACACTCATGTCTTTCCCTT+CGG + chr5_1:13285780-13285799 None:intergenic 45.0%
AAGGGAAAGACATGAGTGTG+CGG - chr5_1:13285780-13285799 Msa0718900:exon 45.0%
GTGTGCGGCATAGTAAAAGA+TGG - chr5_1:13285795-13285814 Msa0718900:five_prime_UTR 45.0%
TGCGGCATAGTAAAAGATGG+TGG - chr5_1:13285798-13285817 Msa0718900:five_prime_UTR 45.0%
TGATACCGCAAGAAAGAGGT+TGG - chr5_1:13285856-13285875 Msa0718900:intron 45.0%
!! AATCACCGGTTCGAACTTCA+TGG - chr5_1:13286450-13286469 Msa0718900:intron 45.0%
! TCTGGAATACGCTTCCAGAA+TGG + chr5_1:13286870-13286889 None:intergenic 45.0%
GAAGCGTATTCCAGAGTTCT+TGG - chr5_1:13286875-13286894 Msa0718900:intron 45.0%
TGTCTGGTGCATTAGTAGAG+AGG - chr5_1:13287159-13287178 Msa0718900:intron 45.0%
!!! AAGATTAATTTAATTTAAAA+TGG - chr5_1:13278914-13278933 Msa0718900:intron 5.0%
!!! AGATTAATTTAATTTAAAAT+GGG - chr5_1:13278915-13278934 Msa0718900:intron 5.0%
!!! ATTTTTTCTTTTAAATTTTT+TGG - chr5_1:13279534-13279553 Msa0718900:intron 5.0%
!!! TTTAAAATAATACTATATTT+TGG - chr5_1:13279740-13279759 Msa0718900:CDS 5.0%
!! TTTAAATAATATCAATTAAT+TGG - chr5_1:13283998-13284017 Msa0718900:intron 5.0%
!! TTAAATAATATCAATTAATT+GGG - chr5_1:13283999-13284018 Msa0718900:intron 5.0%
!!! TATTTTATGATTTTATATAA+TGG - chr5_1:13284311-13284330 Msa0718900:intron 5.0%
! CACTTGGGTGCCTTTGCTTT+TGG - chr5_1:13279329-13279348 Msa0718900:intron 50.0%
!! TTGGGTGCCTTTGCTTTTGG+TGG - chr5_1:13279332-13279351 Msa0718900:intron 50.0%
CCGAAAGCCACCAAAAGCAA+AGG + chr5_1:13279342-13279361 None:intergenic 50.0%
TACTGTGACATTGTGGCCCA+TGG - chr5_1:13279628-13279647 Msa0718900:CDS 50.0%
! TGGCACCGTGCCATTAAATC+TGG - chr5_1:13280103-13280122 Msa0718900:CDS 50.0%
! GGCACCGTGCCATTAAATCT+GGG - chr5_1:13280104-13280123 Msa0718900:CDS 50.0%
GTGGCCCAGATTTAATGGCA+CGG + chr5_1:13280111-13280130 None:intergenic 50.0%
! GGCACCGTGCCATTAAATCT+GGG + chr5_1:13280104-13280123 None:intergenic 50.0%
! TGGCACCGTGCCATTAAATC+TGG + chr5_1:13280103-13280122 None:intergenic 50.0%
TAGGTCAAACACTGTGGTCG+TGG - chr5_1:13280354-13280373 Msa0718900:CDS 50.0%
!! GGAGCTAACGGTTCAAGTTG+TGG + chr5_1:13281687-13281706 None:intergenic 50.0%
! CCCGTTTTACTTCCACTCCA+TGG - chr5_1:13281880-13281899 Msa0718900:intron 50.0%
! CTTTGAGAAGGACCATGGAG+TGG + chr5_1:13281895-13281914 None:intergenic 50.0%
TCTAACAAGGACATGGGACC+AGG + chr5_1:13282100-13282119 None:intergenic 50.0%
GAGAAGAGAGCCCCACAAAA+GGG + chr5_1:13282350-13282369 None:intergenic 50.0%
AGAGAAGAGAGCCCCACAAA+AGG + chr5_1:13282351-13282370 None:intergenic 50.0%
AGAACAAGTAGAGGAGACGG+AGG - chr5_1:13284409-13284428 Msa0718900:intron 50.0%
TCTTCCAGCACTCCAGAAGT+TGG - chr5_1:13285501-13285520 Msa0718900:intron 50.0%
!! GAGTTTTGGTATGGTGAGGG+AGG - chr5_1:13285746-13285765 Msa0718900:CDS 50.0%
! GAGGTTGGTTCATCAGGGAA+AGG - chr5_1:13285871-13285890 Msa0718900:intron 50.0%
! GTTGGTTCATCAGGGAAAGG+TGG - chr5_1:13285874-13285893 Msa0718900:intron 50.0%
GGTGGTACGCCAAGTATTCA+AGG - chr5_1:13285892-13285911 Msa0718900:intron 50.0%
CAGTCTGGAAAGGCAAACCT+TGG - chr5_1:13286266-13286285 Msa0718900:intron 50.0%
CCTTGTGCAGTTCTTGTCCA+AGG + chr5_1:13286286-13286305 None:intergenic 50.0%
CCTTGGACAAGAACTGCACA+AGG - chr5_1:13286283-13286302 Msa0718900:intron 50.0%
GGTCTCAAGGGCCATATGTT+CGG + chr5_1:13286366-13286385 None:intergenic 50.0%
AACTCACTAAGTTGCTCCCC+TGG - chr5_1:13286965-13286984 Msa0718900:intron 50.0%
!! ACGAAAGGCACCGAAGCCAA+AGG - chr5_1:13279461-13279480 Msa0718900:intron 55.0%
!! CACTTCGGTGCCTTTGGCTT+CGG + chr5_1:13279474-13279493 None:intergenic 55.0%
!! GACTAGCTTGCTGCAGCAGA+GGG - chr5_1:13279849-13279868 Msa0718900:CDS 55.0%
GTGAGGTAGGACTGTAGGAC+AGG + chr5_1:13280936-13280955 None:intergenic 55.0%
GACTCGTGAGGTAGGACTGT+AGG + chr5_1:13280941-13280960 None:intergenic 55.0%
TGGCTTCATTGTGGGGTAGC+CGG - chr5_1:13281936-13281955 Msa0718900:intron 55.0%
GGGCTCTCTTCTCTCCTTCT+TGG - chr5_1:13282357-13282376 Msa0718900:intron 55.0%
ACGACACGGAGAAACTTCCG+AGG + chr5_1:13282498-13282517 None:intergenic 55.0%
!! GAGTCCAACTTCTGGAGTGC+TGG + chr5_1:13285508-13285527 None:intergenic 55.0%
CACCAAGCAGGAGTAGTGTC+TGG - chr5_1:13287143-13287162 Msa0718900:intron 55.0%
CACCAGACACTACTCCTGCT+TGG + chr5_1:13287148-13287167 None:intergenic 55.0%
!! GGACTAGCTTGCTGCAGCAG+AGG - chr5_1:13279848-13279867 Msa0718900:CDS 60.0%
GGTATGGTGAGGGAGGAAGC+AGG - chr5_1:13285753-13285772 Msa0718900:CDS 60.0%
AGGGAGGAAGCAGGACCGAA+GGG - chr5_1:13285762-13285781 Msa0718900:CDS 60.0%
!! GGGGAGCACTTCGGTGCCTT+TGG + chr5_1:13279480-13279499 None:intergenic 65.0%
GAGGGAGGAAGCAGGACCGA+AGG - chr5_1:13285761-13285780 Msa0718900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 13278117 13287498 13278117 ID=Msa0718900;Name=Msa0718900
chr5_1 mRNA 13278117 13287498 13278117 ID=Msa0718900-mRNA-1;Parent=Msa0718900;Name=Msa0718900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=291|1|1|1|0.71|0.62|8|282|559
chr5_1 exon 13278117 13278761 13278117 ID=Msa0718900-mRNA-1:exon:5430;Parent=Msa0718900-mRNA-1
chr5_1 exon 13278999 13279346 13278999 ID=Msa0718900-mRNA-1:exon:5429;Parent=Msa0718900-mRNA-1
chr5_1 exon 13279627 13279896 13279627 ID=Msa0718900-mRNA-1:exon:5428;Parent=Msa0718900-mRNA-1
chr5_1 exon 13280078 13280152 13280078 ID=Msa0718900-mRNA-1:exon:5427;Parent=Msa0718900-mRNA-1
chr5_1 exon 13280240 13280394 13280240 ID=Msa0718900-mRNA-1:exon:5426;Parent=Msa0718900-mRNA-1
chr5_1 exon 13280879 13281271 13280879 ID=Msa0718900-mRNA-1:exon:5425;Parent=Msa0718900-mRNA-1
chr5_1 exon 13285710 13285837 13285710 ID=Msa0718900-mRNA-1:exon:5424;Parent=Msa0718900-mRNA-1
chr5_1 exon 13287260 13287498 13287260 ID=Msa0718900-mRNA-1:exon:5423;Parent=Msa0718900-mRNA-1
chr5_1 five_prime_UTR 13287260 13287498 13287260 ID=Msa0718900-mRNA-1:five_prime_utr;Parent=Msa0718900-mRNA-1
chr5_1 five_prime_UTR 13285786 13285837 13285786 ID=Msa0718900-mRNA-1:five_prime_utr;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13285710 13285785 13285710 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13280879 13281271 13280879 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13280240 13280394 13280240 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13280078 13280152 13280078 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13279627 13279896 13279627 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13278999 13279346 13278999 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 CDS 13278399 13278761 13278399 ID=Msa0718900-mRNA-1:cds;Parent=Msa0718900-mRNA-1
chr5_1 three_prime_UTR 13278117 13278398 13278117 ID=Msa0718900-mRNA-1:three_prime_utr;Parent=Msa0718900-mRNA-1
Gene Sequence

>Msa0718900

ATGTTTAGAATGAAGAAAGGACTAGCTTGCTGCAGCAGAGGGAAGAAAATCAGCATTGATTTTCATGACCAAGAGAGAATTATGACATATAATGGCCTTGAAAGTTGCATTCTAAACAATCAGTCTTATGAAGAGGAAAGCAGAACAAGTAGAGGAGACGGAGGCATAACCGATTCATTTGATGACGATGATTCAAGCTGTTCTTCAAGCAAAGATGCGTTTGGATCATTCTCTTCAAAGTGTTTAACAATGAAAAGGGAAGATGAACAAGGACTTGAAGAATGGGAACTCTCAGAAAGTCCTCAACATTTTTACGTCAAAGAGAAACCTTCTTATGCAATCCAACATTCAGATATTGAAGCTATGAAGGAAAAATTTTCAAAGCTCTTACTTGGTGAAGATGTTACTGGAGGAACTAAGGGCATCACTACAGCTTTGGCACTGTCTAATGCCATCACAAACTTGTCAGTTACTGTTTTTGGTGAGCTATGGAAATTGGAACCTCTATCTGAAGAAAGAAAGAGCAAATGGCGAAGAGAAATGGACTGGTTACTGTCTCCTACAAACTATATGGTTGAGCTAGTTCCTGCTAAGCAAAACAATGCCAATGGTAGAATCTTTGAGATAATGACGCCTAAAGCTCGTGCAGACATTCACATGAATCTTCCAGCACTCCAGAAGTTGGACTCTATGCTTATCGATGCACTTGATTCAATGGTGAAAACAGAGTTTTGGTATGGTGAGGGAGGAAGCAGGACCGAAGGGAAAGACATGAGTGTGCGGCATAGTAAAAGATGGTGGCTTCCATCACCTCAAGTACCAAAAACTGGTCTTTCTGATACCGCAAGAAAGAGGTTGGTTCATCAGGGAAAGGTGGTACGCCAAGTATTCAAGGCTGCCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCTGTGCCAACAGTTATTAGAGATGCACTTGCAAAGTCTGGAAAGGCAAACCTTGGACAAGAACTGCACAAGGTTTTGACAGCTGAATCAACTTCTGGAGAAGACATGATTAAATCTCTCAATTTGAAATCCGAACATATGGCCCTTGAGACCATTAATAAATTGGAAGCTGTTATATTCTCGTTGAAAGAGAGAACTATGGAACAAGTTACTGGCAAATCACCGGTTCGAACTTCATGGTCTTTTGTGAAGGGCCCTATGTCAGAAGCTGATAAACTTGAGTTATTATTGGACCGTGCTGAAACACTTTTACAGCTTCTTAAAATCAGATATCCCAATCTTCCTCAAACATTTCTTGATGCTGCTAAAGTTCAATATGGCAAGGATATTGGACATTCCATTCTGGAAGCGTATTCCAGAGTTCTTGGAAATTTAGCCTTCAGCATATTGTCTAGAATAGGAGATATATTACAAGAGGATTGTCTAAGCAGTTCTAACTCACTAAGTTGCTCCCCTGGAATAAATAATATCTCTGAAACTTGGATGGTGGATTCACATATTAAGCAATCCTTACTTCAAAAGATGAACAAAGCAGATGGACAATGTTGTGACAGTACTTCAGATTTAGAGCTCAAATCATTTGATGCTAAATCCCAAGATGTGATAATAGCTACACCAAGCAGGAGTAGTGTCTGGTGCATTAGTAGAGAGGCTTGTACGAGTGTGTCTACTCAAAATTCGCCATAG

Protein sequence

>Msa0718900

MFRMKKGLACCSRGKKISIDFHDQERIMTYNGLESCILNNQSYEEESRTSRGDGGITDSFDDDDSSCSSSKDAFGSFSSKCLTMKREDEQGLEEWELSESPQHFYVKEKPSYAIQHSDIEAMKEKFSKLLLGEDVTGGTKGITTALALSNAITNLSVTVFGELWKLEPLSEERKSKWRREMDWLLSPTNYMVELVPAKQNNANGRIFEIMTPKARADIHMNLPALQKLDSMLIDALDSMVKTEFWYGEGGSRTEGKDMSVRHSKRWWLPSPQVPKTGLSDTARKRLVHQGKVVRQVFKAAKSINENVLLEMPVPTVIRDALAKSGKANLGQELHKVLTAESTSGEDMIKSLNLKSEHMALETINKLEAVIFSLKERTMEQVTGKSPVRTSWSFVKGPMSEADKLELLLDRAETLLQLLKIRYPNLPQTFLDAAKVQYGKDIGHSILEAYSRVLGNLAFSILSRIGDILQEDCLSSSNSLSCSPGINNISETWMVDSHIKQSLLQKMNKADGQCCDSTSDLELKSFDAKSQDVIIATPSRSSVWCISREACTSVSTQNSP*