Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098190 | XP_013465938.1 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 6.83e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098190 | I3SWK3 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 3.26e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012460 | Msa0098190 | 0.830577 | 2.716237e-55 | -8.615850e-47 |
| Msa0017120 | Msa0098190 | 0.825869 | 3.704658e-54 | -8.615850e-47 |
| Msa0017760 | Msa0098190 | 0.973226 | 4.515072e-136 | -8.615850e-47 |
| Msa0034320 | Msa0098190 | 0.804835 | 1.785396e-49 | -8.615850e-47 |
| Msa0034340 | Msa0098190 | 0.802246 | 6.144862e-49 | -8.615850e-47 |
| Msa0044220 | Msa0098190 | 0.813071 | 3.080776e-51 | -8.615850e-47 |
| Msa0049990 | Msa0098190 | 0.811784 | 5.886794e-51 | -8.615850e-47 |
| Msa0056130 | Msa0098190 | 0.819386 | 1.193336e-52 | -8.615850e-47 |
| Msa0056160 | Msa0098190 | 0.820769 | 5.757013e-53 | -8.615850e-47 |
| Msa0062750 | Msa0098190 | 0.808151 | 3.566061e-50 | -8.615850e-47 |
| Msa0065390 | Msa0098190 | 0.824940 | 6.145794e-54 | -8.615850e-47 |
| Msa0065690 | Msa0098190 | 0.835802 | 1.357216e-56 | -8.615850e-47 |
| Msa0078090 | Msa0098190 | 0.824507 | 7.775188e-54 | -8.615850e-47 |
| Msa0084680 | Msa0098190 | 0.811084 | 8.356894e-51 | -8.615850e-47 |
| Msa0089210 | Msa0098190 | 0.836909 | 7.096075e-57 | -8.615850e-47 |
| Msa0090800 | Msa0098190 | 0.830039 | 3.675811e-55 | -8.615850e-47 |
| Msa0091550 | Msa0098190 | 0.842216 | 2.960006e-58 | -8.615850e-47 |
| Msa0092660 | Msa0098190 | 0.812734 | 3.652703e-51 | -8.615850e-47 |
| Msa0092730 | Msa0098190 | 0.814061 | 1.865933e-51 | -8.615850e-47 |
| Msa0098190 | Msa0110710 | 0.818755 | 1.661476e-52 | -8.615850e-47 |
| Msa0098190 | Msa0112290 | 0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0098190 | Msa0123170 | 0.809501 | 1.834515e-50 | -8.615850e-47 |
| Msa0098190 | Msa0127080 | 0.803106 | 4.084129e-49 | -8.615850e-47 |
| Msa0098190 | Msa0131390 | 0.813769 | 2.163970e-51 | -8.615850e-47 |
| Msa0098190 | Msa0135980 | 0.806142 | 9.497802e-50 | -8.615850e-47 |
| Msa0098190 | Msa0137600 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa0098190 | Msa0139050 | 0.818778 | 1.640897e-52 | -8.615850e-47 |
| Msa0098190 | Msa0144340 | 0.816496 | 5.367500e-52 | -8.615850e-47 |
| Msa0098190 | Msa0146180 | 0.806730 | 7.137472e-50 | -8.615850e-47 |
| Msa0098190 | Msa0147990 | 0.801294 | 9.635594e-49 | -8.615850e-47 |
| Msa0098190 | Msa0149070 | 0.802762 | 4.809630e-49 | -8.615850e-47 |
| Msa0098190 | Msa0152380 | 0.833728 | 4.512841e-56 | -8.615850e-47 |
| Msa0098190 | Msa0157020 | 0.815021 | 1.144459e-51 | -8.615850e-47 |
| Msa0098190 | Msa0173610 | 0.802851 | 4.610932e-49 | -8.615850e-47 |
| Msa0098190 | Msa0176710 | 0.804079 | 2.566044e-49 | -8.615850e-47 |
| Msa0098190 | Msa0177490 | 0.806856 | 6.712383e-50 | -8.615850e-47 |
| Msa0098190 | Msa0194570 | 0.840635 | 7.723708e-58 | -8.615850e-47 |
| Msa0098190 | Msa0206940 | 0.822229 | 2.648935e-53 | -8.615850e-47 |
| Msa0098190 | Msa0214730 | 0.807728 | 4.387562e-50 | -8.615850e-47 |
| Msa0098190 | Msa0217470 | 0.800123 | 1.670164e-48 | -8.615850e-47 |
| Msa0098190 | Msa0222070 | 0.817246 | 3.643121e-52 | -8.615850e-47 |
| Msa0098190 | Msa0222120 | 0.817196 | 3.737963e-52 | -8.615850e-47 |
| Msa0098190 | Msa0223280 | 0.809439 | 1.890940e-50 | -8.615850e-47 |
| Msa0098190 | Msa0225010 | 0.801937 | 7.114563e-49 | -8.615850e-47 |
| Msa0098190 | Msa0226800 | 0.824146 | 9.454460e-54 | -8.615850e-47 |
| Msa0098190 | Msa0227290 | 0.806877 | 6.645537e-50 | -8.615850e-47 |
| Msa0098190 | Msa0247310 | 0.842022 | 3.333165e-58 | -8.615850e-47 |
| Msa0098190 | Msa0250520 | 0.814210 | 1.730180e-51 | -8.615850e-47 |
| Msa0098190 | Msa0257130 | 0.845166 | 4.811513e-59 | -8.615850e-47 |
| Msa0098190 | Msa0258380 | 0.824108 | 9.649582e-54 | -8.615850e-47 |
| Msa0098190 | Msa0259980 | 0.812370 | 4.386137e-51 | -8.615850e-47 |
| Msa0098190 | Msa0263620 | 0.816355 | 5.771942e-52 | -8.615850e-47 |
| Msa0098190 | Msa0269830 | 0.812560 | 3.986586e-51 | -8.615850e-47 |
| Msa0098190 | Msa0298940 | 0.807958 | 3.918909e-50 | -8.615850e-47 |
| Msa0098190 | Msa0298970 | 0.827889 | 1.219170e-54 | -8.615850e-47 |
| Msa0098190 | Msa0304870 | 0.818532 | 1.865897e-52 | -8.615850e-47 |
| Msa0098190 | Msa0307620 | 0.985177 | 9.174243e-163 | -8.615850e-47 |
| Msa0098190 | Msa0314790 | 0.832736 | 7.972032e-56 | -8.615850e-47 |
| Msa0098190 | Msa0323990 | 0.812656 | 3.799285e-51 | -8.615850e-47 |
| Msa0098190 | Msa0327900 | 0.810864 | 9.324934e-51 | -8.615850e-47 |
| Msa0098190 | Msa0334780 | 0.843671 | 1.213899e-58 | -8.615850e-47 |
| Msa0098190 | Msa0334980 | 0.800091 | 1.695924e-48 | -8.615850e-47 |
| Msa0098190 | Msa0335740 | 0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa0098190 | Msa0341260 | 0.817668 | 2.925941e-52 | -8.615850e-47 |
| Msa0098190 | Msa0352200 | 0.803745 | 3.011224e-49 | -8.615850e-47 |
| Msa0098190 | Msa0354490 | 0.812434 | 4.247928e-51 | -8.615850e-47 |
| Msa0098190 | Msa0362840 | 0.815520 | 8.865139e-52 | -8.615850e-47 |
| Msa0098190 | Msa0367370 | 0.806887 | 6.611067e-50 | -8.615850e-47 |
| Msa0098190 | Msa0375430 | 0.814175 | 1.761376e-51 | -8.615850e-47 |
| Msa0098190 | Msa0377560 | 0.805233 | 1.473799e-49 | -8.615850e-47 |
| Msa0098190 | Msa0377630 | 0.804241 | 2.373850e-49 | -8.615850e-47 |
| Msa0098190 | Msa0380360 | 0.831142 | 1.973736e-55 | -8.615850e-47 |
| Msa0098190 | Msa0382500 | 0.813442 | 2.554808e-51 | -8.615850e-47 |
| Msa0098190 | Msa0413180 | 0.809561 | 1.780532e-50 | -8.615850e-47 |
| Msa0098190 | Msa0417630 | 0.806971 | 6.347105e-50 | -8.615850e-47 |
| Msa0098190 | Msa0432680 | 0.819944 | 8.899550e-53 | -8.615850e-47 |
| Msa0098190 | Msa0446480 | 0.821660 | 3.587296e-53 | -8.615850e-47 |
| Msa0098190 | Msa0458110 | 0.810448 | 1.146766e-50 | -8.615850e-47 |
| Msa0098190 | Msa0482960 | 0.817461 | 3.259149e-52 | -8.615850e-47 |
| Msa0098190 | Msa0485280 | 0.847559 | 1.071087e-59 | -8.615850e-47 |
| Msa0098190 | Msa0504730 | 0.806899 | 6.575666e-50 | -8.615850e-47 |
| Msa0098190 | Msa0517300 | 0.811783 | 5.889310e-51 | -8.615850e-47 |
| Msa0098190 | Msa0518160 | 0.816116 | 6.525933e-52 | -8.615850e-47 |
| Msa0098190 | Msa0524050 | 0.803921 | 2.766917e-49 | -8.615850e-47 |
| Msa0098190 | Msa0524120 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
| Msa0098190 | Msa0546740 | 0.815809 | 7.643869e-52 | -8.615850e-47 |
| Msa0098190 | Msa0555940 | 0.822729 | 2.027056e-53 | -8.615850e-47 |
| Msa0098190 | Msa0560200 | 0.817683 | 2.903390e-52 | -8.615850e-47 |
| Msa0098190 | Msa0567290 | 0.866080 | 3.703565e-65 | -8.615850e-47 |
| Msa0098190 | Msa0568170 | 0.822667 | 2.094993e-53 | -8.615850e-47 |
| Msa0098190 | Msa0574170 | 0.820716 | 5.921699e-53 | -8.615850e-47 |
| Msa0098190 | Msa0576420 | 0.828392 | 9.224814e-55 | -8.615850e-47 |
| Msa0098190 | Msa0589290 | 0.812324 | 4.489440e-51 | -8.615850e-47 |
| Msa0098190 | Msa0600390 | 0.820523 | 6.557456e-53 | -8.615850e-47 |
| Msa0098190 | Msa0607280 | 0.813485 | 2.499164e-51 | -8.615850e-47 |
| Msa0098190 | Msa0607300 | 0.836920 | 7.052333e-57 | -8.615850e-47 |
| Msa0098190 | Msa0619060 | 0.800321 | 1.522326e-48 | -8.615850e-47 |
| Msa0098190 | Msa0619330 | 0.809314 | 2.011211e-50 | -8.615850e-47 |
| Msa0098190 | Msa0622390 | 0.804388 | 2.212938e-49 | -8.615850e-47 |
| Msa0098190 | Msa0623270 | 0.802690 | 4.978172e-49 | -8.615850e-47 |
| Msa0098190 | Msa0640880 | 0.831783 | 1.372206e-55 | -8.615850e-47 |
| Msa0098190 | Msa0645820 | 0.818802 | 1.621102e-52 | -8.615850e-47 |
| Msa0098190 | Msa0647750 | 0.809507 | 1.828596e-50 | -8.615850e-47 |
| Msa0098190 | Msa0667970 | 0.823395 | 1.417301e-53 | -8.615850e-47 |
| Msa0098190 | Msa0681890 | 0.806516 | 7.921936e-50 | -8.615850e-47 |
| Msa0098190 | Msa0683650 | 0.811481 | 6.852345e-51 | -8.615850e-47 |
| Msa0098190 | Msa0685540 | 0.800561 | 1.360241e-48 | -8.615850e-47 |
| Msa0098190 | Msa0686740 | 0.818036 | 2.416662e-52 | -8.615850e-47 |
| Msa0098190 | Msa0690350 | 0.825025 | 5.870252e-54 | -8.615850e-47 |
| Msa0098190 | Msa0702070 | 0.811452 | 6.950334e-51 | -8.615850e-47 |
| Msa0098190 | Msa0702120 | 0.816300 | 5.937951e-52 | -8.615850e-47 |
| Msa0098190 | Msa0703720 | 0.800374 | 1.484988e-48 | -8.615850e-47 |
| Msa0098190 | Msa0703760 | 0.835233 | 1.890414e-56 | -8.615850e-47 |
| Msa0098190 | Msa0704570 | 0.800181 | 1.625443e-48 | -8.615850e-47 |
| Msa0098190 | Msa0707780 | 0.825702 | 4.059705e-54 | -8.615850e-47 |
| Msa0098190 | Msa0770430 | 0.809407 | 1.921337e-50 | -8.615850e-47 |
| Msa0098190 | Msa0780140 | 0.823666 | 1.225285e-53 | -8.615850e-47 |
| Msa0098190 | Msa0790180 | 0.815749 | 7.881122e-52 | -8.615850e-47 |
| Msa0098190 | Msa0790830 | 0.812920 | 3.325006e-51 | -8.615850e-47 |
| Msa0098190 | Msa0802210 | 0.801603 | 8.329979e-49 | -8.615850e-47 |
| Msa0098190 | Msa0824140 | 0.823945 | 1.053622e-53 | -8.615850e-47 |
| Msa0098190 | Msa0836200 | 0.802695 | 4.966270e-49 | -8.615850e-47 |
| Msa0098190 | Msa0851740 | 0.803571 | 3.271922e-49 | -8.615850e-47 |
| Msa0098190 | Msa0863250 | 0.829798 | 4.207930e-55 | -8.615850e-47 |
| Msa0098190 | Msa0864150 | 0.815418 | 9.341762e-52 | -8.615850e-47 |
| Msa0098190 | Msa0873830 | 0.811865 | 5.652420e-51 | -8.615850e-47 |
| Msa0098190 | Msa0925160 | 0.814660 | 1.376021e-51 | -8.615850e-47 |
| Msa0098190 | Msa0926090 | 0.802531 | 5.367857e-49 | -8.615850e-47 |
| Msa0098190 | Msa1001780 | 0.805692 | 1.180836e-49 | -8.615850e-47 |
| Msa0098190 | Msa1002980 | 0.804258 | 2.355289e-49 | -8.615850e-47 |
| Msa0098190 | Msa1022310 | 0.806272 | 8.916650e-50 | -8.615850e-47 |
| Msa0098190 | Msa1033160 | 0.807143 | 5.836507e-50 | -8.615850e-47 |
| Msa0098190 | Msa1061180 | 0.805825 | 1.107098e-49 | -8.615850e-47 |
| Msa0098190 | Msa1067430 | 0.831226 | 1.881712e-55 | -8.615850e-47 |
| Msa0098190 | Msa1069440 | 0.810325 | 1.219521e-50 | -8.615850e-47 |
| Msa0098190 | Msa1069450 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0098190 | Msa1080620 | 0.830853 | 2.323425e-55 | -8.615850e-47 |
| Msa0098190 | Msa1080690 | 0.819334 | 1.226759e-52 | -8.615850e-47 |
| Msa0098190 | Msa1084490 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0098190 | Msa1106560 | 0.816568 | 5.170923e-52 | -8.615850e-47 |
| Msa0098190 | Msa1126310 | 0.815879 | 7.372962e-52 | -8.615850e-47 |
| Msa0098190 | Msa1130650 | 0.816372 | 5.720014e-52 | -8.615850e-47 |
| Msa0098190 | Msa1130660 | 0.810901 | 9.152125e-51 | -8.615850e-47 |
| Msa0098190 | Msa1130730 | 0.834904 | 2.288278e-56 | -8.615850e-47 |
| Msa0098190 | Msa1132820 | 0.803871 | 2.834420e-49 | -8.615850e-47 |
| Msa0098190 | Msa1145370 | 0.802060 | 6.710886e-49 | -8.615850e-47 |
| Msa0098190 | Msa1149760 | 0.802562 | 5.290151e-49 | -8.615850e-47 |
| Msa0098190 | Msa1161160 | 0.810624 | 1.050568e-50 | -8.615850e-47 |
| Msa0098190 | Msa1166180 | 0.827860 | 1.238885e-54 | -8.615850e-47 |
| Msa0098190 | Msa1166280 | 0.829646 | 4.582169e-55 | -8.615850e-47 |
| Msa0098190 | Msa1167160 | 0.830482 | 2.864475e-55 | -8.615850e-47 |
| Msa0098190 | Msa1171340 | 0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0098190 | Msa1186210 | 0.812585 | 3.937635e-51 | -8.615850e-47 |
| Msa0098190 | Msa1197110 | 0.810614 | 1.056209e-50 | -8.615850e-47 |
| Msa0098190 | Msa1208750 | 0.827594 | 1.435098e-54 | -8.615850e-47 |
| Msa0098190 | Msa1219250 | 0.815107 | 1.095189e-51 | -8.615850e-47 |
| Msa0098190 | Msa1226360 | 0.810477 | 1.130556e-50 | -8.615850e-47 |
| Msa0098190 | Msa1250670 | 0.801482 | 8.818622e-49 | -8.615850e-47 |
| Msa0098190 | Msa1259470 | 0.807031 | 6.164594e-50 | -8.615850e-47 |
| Msa0098190 | Msa1263030 | 0.829618 | 4.655236e-55 | -8.615850e-47 |
| Msa0098190 | Msa1274740 | 0.811654 | 6.282868e-51 | -8.615850e-47 |
| Msa0098190 | Msa1279340 | 0.843870 | 1.073791e-58 | -8.615850e-47 |
| Msa0098190 | Msa1293530 | 0.816599 | 5.089050e-52 | -8.615850e-47 |
| Msa0098190 | Msa1299160 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0098190 | Msa1300880 | 0.805072 | 1.592584e-49 | -8.615850e-47 |
| Msa0098190 | Msa1312730 | 0.808913 | 2.451625e-50 | -8.615850e-47 |
| Msa0098190 | Msa1319520 | 0.801180 | 1.016846e-48 | -8.615850e-47 |
| Msa0098190 | Msa1325650 | 0.828726 | 7.657249e-55 | -8.615850e-47 |
| Msa0098190 | Msa1325980 | 0.812689 | 3.737145e-51 | -8.615850e-47 |
| Msa0098190 | Msa1344430 | 0.809229 | 2.098263e-50 | -8.615850e-47 |
| Msa0098190 | Msa1368730 | 0.814961 | 1.180023e-51 | -8.615850e-47 |
| Msa0098190 | Msa1374810 | 0.811458 | 6.931946e-51 | -8.615850e-47 |
| Msa0098190 | Msa1380720 | 0.801707 | 7.928907e-49 | -8.615850e-47 |
| Msa0098190 | Msa1392680 | 0.829915 | 3.939534e-55 | -8.615850e-47 |
| Msa0098190 | Msa1405770 | 0.818486 | 1.912021e-52 | -8.615850e-47 |
| Msa0098190 | Msa1406230 | 0.818542 | 1.856434e-52 | -8.615850e-47 |
| Msa0098190 | Msa1407710 | 0.855740 | 5.149222e-62 | -8.615850e-47 |
| Msa0098190 | Msa1410170 | 0.834700 | 2.575510e-56 | -8.615850e-47 |
| Msa0098190 | Msa1412520 | 0.807308 | 5.386436e-50 | -8.615850e-47 |
| Msa0098190 | Msa1415250 | 0.828592 | 8.253680e-55 | -8.615850e-47 |
| Msa0098190 | Msa1416460 | 0.811535 | 6.669779e-51 | -8.615850e-47 |
| Msa0098190 | Msa1418200 | 0.845821 | 3.197147e-59 | -8.615850e-47 |
| Msa0098190 | Msa1422500 | 0.802745 | 4.849152e-49 | -8.615850e-47 |
| Msa0098190 | Msa1423550 | 0.805031 | 1.624585e-49 | -8.615850e-47 |
| Msa0098190 | Msa1424240 | 0.802663 | 5.041121e-49 | -8.615850e-47 |
| Msa0098190 | Msa1431960 | 0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0098190 | Msa1439800 | 0.801077 | 1.067582e-48 | -8.615850e-47 |
| Msa0098190 | Msa1449600 | 0.811705 | 6.125526e-51 | -8.615850e-47 |
| Msa0098190 | Msa1449680 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
| Msa0098190 | Msa1451840 | 0.814593 | 1.423624e-51 | -8.615850e-47 |
| Msa0098190 | Msa1456830 | 0.815752 | 7.871641e-52 | -8.615850e-47 |
| Msa0098190 | Msa1458330 | 0.826561 | 2.535052e-54 | -8.615850e-47 |
| Msa0098190 | Msa1458920 | 0.815662 | 8.241241e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098190 | MtrunA17_Chr1g0152021 | 80.531 | 226 | 6 | 1 | 1 | 226 | 1 | 188 | 8.81e-129 | 361 |
| Msa0098190 | MtrunA17_Chr1g0162311 | 23.457 | 162 | 121 | 1 | 46 | 204 | 49 | 210 | 2.03e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098190 | AT1G49510.2 | 27.344 | 128 | 93 | 0 | 76 | 203 | 30 | 157 | 2.02e-12 | 63.9 |
| Msa0098190 | AT1G49510.3 | 27.344 | 128 | 93 | 0 | 76 | 203 | 88 | 215 | 3.51e-12 | 64.3 |
| Msa0098190 | AT1G49510.1 | 27.344 | 128 | 93 | 0 | 76 | 203 | 88 | 215 | 3.51e-12 | 64.3 |
Find 69 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCAACTTCCAAGTTTC+GGG | 0.178366 | 1_3:-4135038 | Msa0098190:intron |
| TTCCTTCAACTTCCAAGTTT+CGG | 0.256394 | 1_3:-4135039 | Msa0098190:CDS |
| TAACTTCATTAGGCTCATTA+TGG | 0.304347 | 1_3:+4133610 | None:intergenic |
| CGAGTATAAAATGTTTGATT+TGG | 0.307830 | 1_3:+4133663 | None:intergenic |
| CTCCAAGGAAATTCTTGAAC+CGG | 0.309185 | 1_3:+4133537 | None:intergenic |
| GATAAATTTCCGAGCATTTA+CGG | 0.310915 | 1_3:+4133688 | None:intergenic |
| CCTTGTGGCTGATTTCTTGA+AGG | 0.337664 | 1_3:-4133352 | Msa0098190:CDS |
| TGATTTGAAATGGCGTCGTT+TGG | 0.340202 | 1_3:-4133193 | Msa0098190:CDS |
| TTCCGGTTTGGAGGCATAGA+TGG | 0.341673 | 1_3:-4133007 | Msa0098190:exon |
| ATTTGTATCTTAACTTCATT+AGG | 0.343357 | 1_3:+4133600 | None:intergenic |
| CATATGCCGCCGCTAATCTA+TGG | 0.351138 | 1_3:+4132782 | None:intergenic |
| TGATGCAGTTACTTTGGTAT+TGG | 0.370619 | 1_3:-4133077 | Msa0098190:CDS |
| ATTCCCGTTGGCCTCTTTGT+TGG | 0.381717 | 1_3:-4133378 | Msa0098190:CDS |
| AATGAAGTTAAGATACAAAT+CGG | 0.391426 | 1_3:-4133597 | Msa0098190:CDS |
| TTCATCAAGTGTTGCTAAGT+TGG | 0.400076 | 1_3:+4132595 | None:intergenic |
| GGAAATTCTTGAACCGGGCT+TGG | 0.402797 | 1_3:+4133543 | None:intergenic |
| AATGAACACTCCTTCCGGTT+TGG | 0.403905 | 1_3:-4133019 | Msa0098190:CDS |
| GCCCGGTTCAAGAATTTCCT+TGG | 0.409789 | 1_3:-4133539 | Msa0098190:CDS |
| CAGAAAATGAACACTCCTTC+CGG | 0.415455 | 1_3:-4133024 | Msa0098190:CDS |
| GATTTGAAATGGCGTCGTTT+GGG | 0.422850 | 1_3:-4133192 | Msa0098190:CDS |
| AAGATAGCGTCGACATCCTT+AGG | 0.423870 | 1_3:+4135071 | None:intergenic |
| GACAGGAGAATGATTTGAAA+TGG | 0.426454 | 1_3:-4133203 | Msa0098190:intron |
| TATTTATTCCCTTGTTCAAG+TGG | 0.438460 | 1_3:-4132850 | Msa0098190:three_prime_UTR |
| ACACCAACAAAGAGGCCAAC+GGG | 0.464195 | 1_3:+4133375 | None:intergenic |
| AACACTTGATGAAGATTGTA+TGG | 0.465405 | 1_3:-4132585 | Msa0098190:three_prime_UTR |
| GAACACTCCTTCCGGTTTGG+AGG | 0.482482 | 1_3:-4133016 | Msa0098190:CDS |
| ATCCATCTATGCCTCCAAAC+CGG | 0.494534 | 1_3:+4133005 | None:intergenic |
| TCCAAGGAAATTCTTGAACC+GGG | 0.496662 | 1_3:+4133538 | None:intergenic |
| ACATGGTTCGCAACACAACC+AGG | 0.501673 | 1_3:-4133132 | Msa0098190:CDS |
| TTATACGACACTAAGCTTGT+GGG | 0.503274 | 1_3:+4132618 | None:intergenic |
| AGTGGATGAAACAAACTCAA+TGG | 0.513698 | 1_3:-4132832 | Msa0098190:three_prime_UTR |
| CCTCTTTGTTGGTGTCCTTG+TGG | 0.514383 | 1_3:-4133367 | Msa0098190:CDS |
| CACCGATGCTTTAATTGAAG+TGG | 0.515271 | 1_3:+4133638 | None:intergenic |
| TGACGGAGTTGGCATCGAAA+CGG | 0.517136 | 1_3:+4133714 | None:intergenic |
| ACCCGAAACTTGGAAGTTGA+AGG | 0.533653 | 1_3:+4135037 | None:intergenic |
| CAAAGAAGCATTGCCAAGCC+CGG | 0.535706 | 1_3:-4133556 | Msa0098190:CDS |
| GTGGACTGATGCAGTTACTT+TGG | 0.537937 | 1_3:-4133083 | Msa0098190:CDS |
| ATGAAGTTAAGATACAAATC+GGG | 0.545027 | 1_3:-4133596 | Msa0098190:CDS |
| CCACAAGGACACCAACAAAG+AGG | 0.551906 | 1_3:+4133367 | None:intergenic |
| CCGAGCATTTACGGAAATGA+CGG | 0.553717 | 1_3:+4133697 | None:intergenic |
| ATGAACAAGATGATTGAAAG+TGG | 0.558348 | 1_3:+4132885 | None:intergenic |
| TTGTTTCATCCACTTGAACA+AGG | 0.558419 | 1_3:+4132841 | None:intergenic |
| GTTATACGACACTAAGCTTG+TGG | 0.560076 | 1_3:+4132617 | None:intergenic |
| ATTTACGGAAATGACGGAGT+TGG | 0.560264 | 1_3:+4133703 | None:intergenic |
| TGTTTCATCCACTTGAACAA+GGG | 0.563976 | 1_3:+4132842 | None:intergenic |
| TGAAGAACTCGAAGCTCCTA+AGG | 0.565387 | 1_3:-4135087 | Msa0098190:five_prime_UTR |
| CCGTCATTTCCGTAAATGCT+CGG | 0.572387 | 1_3:-4133697 | Msa0098190:CDS |
| TACCACTTCAATTAAAGCAT+CGG | 0.577368 | 1_3:-4133640 | Msa0098190:CDS |
| TTCATGTAACCATAGATTAG+CGG | 0.583962 | 1_3:-4132791 | Msa0098190:three_prime_UTR |
| GACACCAACAAAGAGGCCAA+CGG | 0.588142 | 1_3:+4133374 | None:intergenic |
| ACTACATCTTCTTGTGCAAG+AGG | 0.590723 | 1_3:-4133487 | Msa0098190:CDS |
| AGATGACGTTCATGTCAGCT+TGG | 0.591753 | 1_3:+4132957 | None:intergenic |
| TGGCGTCGTTTGGGCTTGTG+TGG | 0.592958 | 1_3:-4133183 | Msa0098190:CDS |
| CACTTCAATTAAAGCATCGG+TGG | 0.597546 | 1_3:-4133637 | Msa0098190:CDS |
| ATCTATGCCTCCAAACCGGA+AGG | 0.607041 | 1_3:+4133009 | None:intergenic |
| TGGTCAAGTTTATGTCGACA+TGG | 0.610369 | 1_3:-4133149 | Msa0098190:CDS |
| GATACAAATCGGGATCATGA+AGG | 0.613335 | 1_3:-4133586 | Msa0098190:CDS |
| TTGTGCAAGAGGCATTAAAG+TGG | 0.616743 | 1_3:-4133476 | Msa0098190:CDS |
| GTATGTTGAGCATTTCTCCA+AGG | 0.620282 | 1_3:+4133522 | None:intergenic |
| CGAGAATTAATCATTCCCGT+TGG | 0.622166 | 1_3:-4133390 | Msa0098190:CDS |
| TATACGACACTAAGCTTGTG+GGG | 0.634173 | 1_3:+4132619 | None:intergenic |
| CATGGTTCGCAACACAACCA+GGG | 0.638072 | 1_3:-4133131 | Msa0098190:CDS |
| ACATGCAAAAGAAACACCCC+TGG | 0.646921 | 1_3:+4133114 | None:intergenic |
| AGAATTGTTTCATCAATCCG+AGG | 0.652715 | 1_3:-4133319 | Msa0098190:intron |
| CTTGCACAAGAAGATGTAGT+CGG | 0.655649 | 1_3:+4133490 | None:intergenic |
| CCTTCAAGAAATCAGCCACA+AGG | 0.660555 | 1_3:+4133352 | None:intergenic |
| ATGGTTCGCAACACAACCAG+GGG | 0.671611 | 1_3:-4133130 | Msa0098190:CDS |
| ATGTAACCATAGATTAGCGG+CGG | 0.677000 | 1_3:-4132788 | Msa0098190:three_prime_UTR |
| TAAGCTTGTGGGGAAGATCG+AGG | 0.682021 | 1_3:+4132629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAAAATAGTTTTATTAT+TGG | - | chr1_3:4133375-4133394 | Msa0098190:CDS | 10.0% |
| !!! | ATATATTTTGTCTTTAAAAA+AGG | - | chr1_3:4133686-4133705 | Msa0098190:CDS | 10.0% |
| !!! | AAATAATTTTTGACATGTTT+AGG | - | chr1_3:4133005-4133024 | Msa0098190:exon | 15.0% |
| !!! | AAAACATTTTATAGCTTATA+CGG | - | chr1_3:4133073-4133092 | Msa0098190:CDS | 15.0% |
| !!! | TAAAATAGTTTTATTATTGG+TGG | - | chr1_3:4133378-4133397 | Msa0098190:CDS | 15.0% |
| !! | ATTATGTTATAACTTTAGAT+AGG | - | chr1_3:4133833-4133852 | Msa0098190:intron | 15.0% |
| !! | TCTCTTAATTGCATTAATTA+AGG | - | chr1_3:4132715-4132734 | Msa0098190:three_prime_UTR | 20.0% |
| !!! | TATTTCTAATCATTCATTTC+TGG | + | chr1_3:4133262-4133281 | None:intergenic | 20.0% |
| !! | TAACATAATTCATAAATTGC+AGG | + | chr1_3:4133822-4133841 | None:intergenic | 20.0% |
| !! | ATTTGTATCTTAACTTCATT+AGG | + | chr1_3:4134060-4134079 | None:intergenic | 20.0% |
| !! | AATGAAGTTAAGATACAAAT+CGG | - | chr1_3:4134060-4134079 | Msa0098190:intron | 20.0% |
| !! | TGTAATAAAAAAAGGAATTG+TGG | + | chr1_3:4134391-4134410 | None:intergenic | 20.0% |
| !! | TAGTGTGTTAAATGAAAAAA+TGG | + | chr1_3:4135108-4135127 | None:intergenic | 20.0% |
| !! | ATTAAGTTGTTAATCCAAAC+AGG | - | chr1_3:4133168-4133187 | Msa0098190:CDS | 25.0% |
| !! | TTAAGTTGTTAATCCAAACA+GGG | - | chr1_3:4133169-4133188 | Msa0098190:CDS | 25.0% |
| ! | TCAATTGTTAACAACATCAA+TGG | - | chr1_3:4133403-4133422 | Msa0098190:CDS | 25.0% |
| !! | ACTTTTGATAAACCATACAT+AGG | + | chr1_3:4133567-4133586 | None:intergenic | 25.0% |
| ! | TGTTATAACTTTAGATAGGA+TGG | - | chr1_3:4133837-4133856 | Msa0098190:intron | 25.0% |
| ! | TAAATAAACGAACATTGGAA+TGG | + | chr1_3:4133889-4133908 | None:intergenic | 25.0% |
| ! | TGCTATAAATAAACGAACAT+TGG | + | chr1_3:4133894-4133913 | None:intergenic | 25.0% |
| ! | CGAGTATAAAATGTTTGATT+TGG | + | chr1_3:4133997-4134016 | None:intergenic | 25.0% |
| ! | ATGAAGTTAAGATACAAATC+GGG | - | chr1_3:4134061-4134080 | Msa0098190:intron | 25.0% |
| ! | TAATAATGCAACATATACCT+CGG | + | chr1_3:4134358-4134377 | None:intergenic | 25.0% |
| !!! | TTGGTATTGGAGAAATTTTA+TGG | - | chr1_3:4134593-4134612 | Msa0098190:intron | 25.0% |
| !!! | ATAAAACACTCTTTTGAAGA+GGG | + | chr1_3:4134998-4135017 | None:intergenic | 25.0% |
| !!! | TATAAAACACTCTTTTGAAG+AGG | + | chr1_3:4134999-4135018 | None:intergenic | 25.0% |
| !!! | TCTTCAAAAGAGTGTTTTAT+AGG | - | chr1_3:4134998-4135017 | Msa0098190:intron | 25.0% |
| !!! | CTTCAAAAGAGTGTTTTATA+GGG | - | chr1_3:4134999-4135018 | Msa0098190:intron | 25.0% |
| !!! | TTCAAAAGAGTGTTTTATAG+GGG | - | chr1_3:4135000-4135019 | Msa0098190:intron | 25.0% |
| ! | CTTATTTCTTTAAGCTCTCA+AGG | - | chr1_3:4132876-4132895 | Msa0098190:three_prime_UTR | 30.0% |
| ! | TAAGCTAGAGTATAACTTGT+AGG | - | chr1_3:4133226-4133245 | Msa0098190:intron | 30.0% |
| TATAGTGTAAGAAGTTGCAA+AGG | - | chr1_3:4133348-4133367 | Msa0098190:CDS | 30.0% | |
| ! | ATCAATGGAGATGTCTTTTA+CGG | - | chr1_3:4133418-4133437 | Msa0098190:CDS | 30.0% |
| ATTTAGCATGATTATCTTCG+TGG | - | chr1_3:4133539-4133558 | Msa0098190:CDS | 30.0% | |
| !!! | TGTGTTTTTATTTTGCTCTG+AGG | - | chr1_3:4133588-4133607 | Msa0098190:CDS | 30.0% |
| AATCACTTGCACATACAATA+AGG | + | chr1_3:4133783-4133802 | None:intergenic | 30.0% | |
| !! | ATTGTTTGACTTTTGCAATC+TGG | - | chr1_3:4133861-4133880 | Msa0098190:intron | 30.0% |
| ! | TATCTTTCATTCTTTTGTGC+AGG | - | chr1_3:4133915-4133934 | Msa0098190:intron | 30.0% |
| GATAAATTTCCGAGCATTTA+CGG | + | chr1_3:4133972-4133991 | None:intergenic | 30.0% | |
| TACCACTTCAATTAAAGCAT+CGG | - | chr1_3:4134017-4134036 | Msa0098190:intron | 30.0% | |
| TAACTTCATTAGGCTCATTA+TGG | + | chr1_3:4134050-4134069 | None:intergenic | 30.0% | |
| ! | TATTTTATTGTATCTGCTCG+TGG | - | chr1_3:4134421-4134440 | Msa0098190:intron | 30.0% |
| ! | ATTTTATTGTATCTGCTCGT+GGG | - | chr1_3:4134422-4134441 | Msa0098190:intron | 30.0% |
| ! | TTTCTTTTGCATGTTGCAAA+TGG | - | chr1_3:4134552-4134571 | Msa0098190:intron | 30.0% |
| ATGAACAAGATGATTGAAAG+TGG | + | chr1_3:4134775-4134794 | None:intergenic | 30.0% | |
| TATTTATTCCCTTGTTCAAG+TGG | - | chr1_3:4134807-4134826 | Msa0098190:intron | 30.0% | |
| TTCATGTAACCATAGATTAG+CGG | - | chr1_3:4134866-4134885 | Msa0098190:intron | 30.0% | |
| !! | TAAAACACTCTTTTGAAGAG+GGG | + | chr1_3:4134997-4135016 | None:intergenic | 30.0% |
| AACACTTGATGAAGATTGTA+TGG | - | chr1_3:4135072-4135091 | Msa0098190:exon | 30.0% | |
| TTCCTTCAACTTCCAAGTTT+CGG | - | chr1_3:4132618-4132637 | Msa0098190:three_prime_UTR | 35.0% | |
| ACAAAAACATACCCGAAACT+TGG | + | chr1_3:4132633-4132652 | None:intergenic | 35.0% | |
| AGTTGTAAATCCCTTGCATT+AGG | - | chr1_3:4132743-4132762 | Msa0098190:three_prime_UTR | 35.0% | |
| !! | CTTATTTTCATAAGCTCTCG+AGG | - | chr1_3:4133040-4133059 | Msa0098190:CDS | 35.0% |
| CAACATAATCCAATTCTAGC+AGG | + | chr1_3:4133447-4133466 | None:intergenic | 35.0% | |
| !! | ACGTGTTTTAAACCCTTTGT+CGG | - | chr1_3:4133480-4133499 | Msa0098190:CDS | 35.0% |
| GACATTACATAGTCTGTACT+AGG | + | chr1_3:4133620-4133639 | None:intergenic | 35.0% | |
| TGTGTCATCTTGAAAACACA+TGG | - | chr1_3:4133753-4133772 | Msa0098190:intron | 35.0% | |
| AAGTGATTGCACTAAGTTTC+AGG | - | chr1_3:4133795-4133814 | Msa0098190:intron | 35.0% | |
| AGAATTGTTTCATCAATCCG+AGG | - | chr1_3:4134338-4134357 | Msa0098190:intron | 35.0% | |
| GACAGGAGAATGATTTGAAA+TGG | - | chr1_3:4134454-4134473 | Msa0098190:intron | 35.0% | |
| ! | TGATGCAGTTACTTTGGTAT+TGG | - | chr1_3:4134580-4134599 | Msa0098190:intron | 35.0% |
| TGTTTCATCCACTTGAACAA+GGG | + | chr1_3:4134818-4134837 | None:intergenic | 35.0% | |
| TTGTTTCATCCACTTGAACA+AGG | + | chr1_3:4134819-4134838 | None:intergenic | 35.0% | |
| AGTGGATGAAACAAACTCAA+TGG | - | chr1_3:4134825-4134844 | Msa0098190:intron | 35.0% | |
| TTATACGACACTAAGCTTGT+GGG | + | chr1_3:4135042-4135061 | None:intergenic | 35.0% | |
| ! | TTCATCAAGTGTTGCTAAGT+TGG | + | chr1_3:4135065-4135084 | None:intergenic | 35.0% |
| TCCTTCAACTTCCAAGTTTC+GGG | - | chr1_3:4132619-4132638 | Msa0098190:three_prime_UTR | 40.0% | |
| CAATCAGACACCTAATGCAA+GGG | + | chr1_3:4132756-4132775 | None:intergenic | 40.0% | |
| CATGATATAGAAGCAATCCC+AGG | + | chr1_3:4133204-4133223 | None:intergenic | 40.0% | |
| ! | CACTGAACCGAATGTTTCTA+TGG | - | chr1_3:4133317-4133336 | Msa0098190:intron | 40.0% |
| ! | AACCGAATGTTTCTATGGAG+TGG | - | chr1_3:4133322-4133341 | Msa0098190:CDS | 40.0% |
| CACCACTCCATAGAAACATT+CGG | + | chr1_3:4133327-4133346 | None:intergenic | 40.0% | |
| ! | ATTTACGGAAATGACGGAGT+TGG | + | chr1_3:4133957-4133976 | None:intergenic | 40.0% |
| CACCGATGCTTTAATTGAAG+TGG | + | chr1_3:4134022-4134041 | None:intergenic | 40.0% | |
| !! | CACTTCAATTAAAGCATCGG+TGG | - | chr1_3:4134020-4134039 | Msa0098190:intron | 40.0% |
| GATACAAATCGGGATCATGA+AGG | - | chr1_3:4134071-4134090 | Msa0098190:intron | 40.0% | |
| TCCAAGGAAATTCTTGAACC+GGG | + | chr1_3:4134122-4134141 | None:intergenic | 40.0% | |
| CTCCAAGGAAATTCTTGAAC+CGG | + | chr1_3:4134123-4134142 | None:intergenic | 40.0% | |
| GTATGTTGAGCATTTCTCCA+AGG | + | chr1_3:4134138-4134157 | None:intergenic | 40.0% | |
| CTTGCACAAGAAGATGTAGT+CGG | + | chr1_3:4134170-4134189 | None:intergenic | 40.0% | |
| ACTACATCTTCTTGTGCAAG+AGG | - | chr1_3:4134170-4134189 | Msa0098190:intron | 40.0% | |
| !! | TTGTGCAAGAGGCATTAAAG+TGG | - | chr1_3:4134181-4134200 | Msa0098190:intron | 40.0% |
| CGAGAATTAATCATTCCCGT+TGG | - | chr1_3:4134267-4134286 | Msa0098190:intron | 40.0% | |
| CAAATCATTCTCCTGTCAAG+TGG | + | chr1_3:4134451-4134470 | None:intergenic | 40.0% | |
| ! | TGATTTGAAATGGCGTCGTT+TGG | - | chr1_3:4134464-4134483 | Msa0098190:intron | 40.0% |
| ! | GATTTGAAATGGCGTCGTTT+GGG | - | chr1_3:4134465-4134484 | Msa0098190:intron | 40.0% |
| ! | CTTGTGTGGTATTTTCGTGT+TGG | - | chr1_3:4134488-4134507 | Msa0098190:intron | 40.0% |
| TGGTCAAGTTTATGTCGACA+TGG | - | chr1_3:4134508-4134527 | Msa0098190:intron | 40.0% | |
| ! | CTTTTGCATGTTGCAAATGG+TGG | - | chr1_3:4134555-4134574 | Msa0098190:intron | 40.0% |
| CAGAAAATGAACACTCCTTC+CGG | - | chr1_3:4134633-4134652 | Msa0098190:intron | 40.0% | |
| ATGTAACCATAGATTAGCGG+CGG | - | chr1_3:4134869-4134888 | Msa0098190:intron | 40.0% | |
| TATACGACACTAAGCTTGTG+GGG | + | chr1_3:4135041-4135060 | None:intergenic | 40.0% | |
| GTTATACGACACTAAGCTTG+TGG | + | chr1_3:4135043-4135062 | None:intergenic | 40.0% | |
| TGAAGAACTCGAAGCTCCTA+AGG | - | chr1_3:4132570-4132589 | Msa0098190:three_prime_UTR | 45.0% | |
| !! | AAGATAGCGTCGACATCCTT+AGG | + | chr1_3:4132589-4132608 | None:intergenic | 45.0% |
| ACCCGAAACTTGGAAGTTGA+AGG | + | chr1_3:4132623-4132642 | None:intergenic | 45.0% | |
| CCAATCAGACACCTAATGCA+AGG | + | chr1_3:4132757-4132776 | None:intergenic | 45.0% | |
| CCTTGCATTAGGTGTCTGAT+TGG | - | chr1_3:4132754-4132773 | Msa0098190:three_prime_UTR | 45.0% | |
| AAACAGGGTCTATGTGTCCT+GGG | - | chr1_3:4133184-4133203 | Msa0098190:CDS | 45.0% | |
| ! | CGAATGTTTCTATGGAGTGG+TGG | - | chr1_3:4133325-4133344 | Msa0098190:CDS | 45.0% |
| TTACGGTGACCTGCTAGAAT+TGG | - | chr1_3:4133435-4133454 | Msa0098190:CDS | 45.0% | |
| ! | ACACATGACTTGCCGACAAA+GGG | + | chr1_3:4133495-4133514 | None:intergenic | 45.0% |
| ! | AACACATGACTTGCCGACAA+AGG | + | chr1_3:4133496-4133515 | None:intergenic | 45.0% |
| GGCAAGTCATGTGTTTGCAA+TGG | - | chr1_3:4133501-4133520 | Msa0098190:CDS | 45.0% | |
| ATCTTCGTGGTGCCTATGTA+TGG | - | chr1_3:4133552-4133571 | Msa0098190:CDS | 45.0% | |
| CCGAGCATTTACGGAAATGA+CGG | + | chr1_3:4133963-4133982 | None:intergenic | 45.0% | |
| CCGTCATTTCCGTAAATGCT+CGG | - | chr1_3:4133960-4133979 | Msa0098190:intron | 45.0% | |
| CCTTCAAGAAATCAGCCACA+AGG | + | chr1_3:4134308-4134327 | None:intergenic | 45.0% | |
| ! | CCTTGTGGCTGATTTCTTGA+AGG | - | chr1_3:4134305-4134324 | Msa0098190:intron | 45.0% |
| ACATGCAAAAGAAACACCCC+TGG | + | chr1_3:4134546-4134565 | None:intergenic | 45.0% | |
| ! | GTGGACTGATGCAGTTACTT+TGG | - | chr1_3:4134574-4134593 | Msa0098190:intron | 45.0% |
| AATGAACACTCCTTCCGGTT+TGG | - | chr1_3:4134638-4134657 | Msa0098190:intron | 45.0% | |
| ATCCATCTATGCCTCCAAAC+CGG | + | chr1_3:4134655-4134674 | None:intergenic | 45.0% | |
| AGATGACGTTCATGTCAGCT+TGG | + | chr1_3:4134703-4134722 | None:intergenic | 45.0% | |
| !! | ATTAATAATGTAATAAAAAA+AGG | + | chr1_3:4134399-4134418 | None:intergenic | 5.0% |
| CAGGACACATAGACCCTGTT+TGG | + | chr1_3:4133185-4133204 | None:intergenic | 50.0% | |
| CAAACAGGGTCTATGTGTCC+TGG | - | chr1_3:4133183-4133202 | Msa0098190:CDS | 50.0% | |
| ! | TGACGGAGTTGGCATCGAAA+CGG | + | chr1_3:4133946-4133965 | None:intergenic | 50.0% |
| !! | CAAAGAAGCATTGCCAAGCC+CGG | - | chr1_3:4134101-4134120 | Msa0098190:intron | 50.0% |
| GGAAATTCTTGAACCGGGCT+TGG | + | chr1_3:4134117-4134136 | None:intergenic | 50.0% | |
| GCCCGGTTCAAGAATTTCCT+TGG | - | chr1_3:4134118-4134137 | Msa0098190:intron | 50.0% | |
| ! | ATTCCCGTTGGCCTCTTTGT+TGG | - | chr1_3:4134279-4134298 | Msa0098190:intron | 50.0% |
| ACACCAACAAAGAGGCCAAC+GGG | + | chr1_3:4134285-4134304 | None:intergenic | 50.0% | |
| GACACCAACAAAGAGGCCAA+CGG | + | chr1_3:4134286-4134305 | None:intergenic | 50.0% | |
| CCACAAGGACACCAACAAAG+AGG | + | chr1_3:4134293-4134312 | None:intergenic | 50.0% | |
| ! | CCTCTTTGTTGGTGTCCTTG+TGG | - | chr1_3:4134290-4134309 | Msa0098190:intron | 50.0% |
| ACATGGTTCGCAACACAACC+AGG | - | chr1_3:4134525-4134544 | Msa0098190:intron | 50.0% | |
| CATGGTTCGCAACACAACCA+GGG | - | chr1_3:4134526-4134545 | Msa0098190:intron | 50.0% | |
| ATGGTTCGCAACACAACCAG+GGG | - | chr1_3:4134527-4134546 | Msa0098190:intron | 50.0% | |
| ATCTATGCCTCCAAACCGGA+AGG | + | chr1_3:4134651-4134670 | None:intergenic | 50.0% | |
| !! | TTCCGGTTTGGAGGCATAGA+TGG | - | chr1_3:4134650-4134669 | Msa0098190:intron | 50.0% |
| CATATGCCGCCGCTAATCTA+TGG | + | chr1_3:4134878-4134897 | None:intergenic | 50.0% | |
| TAAGCTTGTGGGGAAGATCG+AGG | + | chr1_3:4135031-4135050 | None:intergenic | 50.0% | |
| !! | GAACACTCCTTCCGGTTTGG+AGG | - | chr1_3:4134641-4134660 | Msa0098190:intron | 55.0% |
| TGGCGTCGTTTGGGCTTGTG+TGG | - | chr1_3:4134474-4134493 | Msa0098190:intron | 60.0% | |
| ! | CTCGTGGGCTGCCACTTGAC+AGG | - | chr1_3:4134437-4134456 | Msa0098190:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4132548 | 4135131 | 4132548 | ID=Msa0098190;Name=Msa0098190 |
| chr1_3 | mRNA | 4132548 | 4135131 | 4132548 | ID=Msa0098190-mRNA-1;Parent=Msa0098190;Name=Msa0098190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=45|1|1|1|1|1|3|463|226 |
| chr1_3 | exon | 4132548 | 4133220 | 4132548 | ID=Msa0098190-mRNA-1:exon:1373;Parent=Msa0098190-mRNA-1 |
| chr1_3 | exon | 4133320 | 4133742 | 4133320 | ID=Msa0098190-mRNA-1:exon:1372;Parent=Msa0098190-mRNA-1 |
| chr1_3 | exon | 4135039 | 4135131 | 4135039 | ID=Msa0098190-mRNA-1:exon:1371;Parent=Msa0098190-mRNA-1 |
| chr1_3 | five_prime_UTR | 4135087 | 4135131 | 4135087 | ID=Msa0098190-mRNA-1:five_prime_utr;Parent=Msa0098190-mRNA-1 |
| chr1_3 | CDS | 4135039 | 4135086 | 4135039 | ID=Msa0098190-mRNA-1:cds;Parent=Msa0098190-mRNA-1 |
| chr1_3 | CDS | 4133320 | 4133742 | 4133320 | ID=Msa0098190-mRNA-1:cds;Parent=Msa0098190-mRNA-1 |
| chr1_3 | CDS | 4133011 | 4133220 | 4133011 | ID=Msa0098190-mRNA-1:cds;Parent=Msa0098190-mRNA-1 |
| chr1_3 | three_prime_UTR | 4132548 | 4133010 | 4132548 | ID=Msa0098190-mRNA-1:three_prime_utr;Parent=Msa0098190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
