Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786340 | A0A396I0I8 | 96.774 | 62 | 2 | 0 | 1 | 62 | 1 | 62 | 4.22e-33 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006400 | Msa0786340 | 0.810595 | 1.066229e-50 | -8.615850e-47 |
| Msa0017510 | Msa0786340 | 0.818764 | 1.653587e-52 | -8.615850e-47 |
| Msa0105070 | Msa0786340 | 0.813535 | 2.437266e-51 | -8.615850e-47 |
| Msa0116770 | Msa0786340 | 0.803016 | 4.262823e-49 | -8.615850e-47 |
| Msa0608620 | Msa0786340 | 0.818580 | 1.819930e-52 | -8.615850e-47 |
| Msa0613440 | Msa0786340 | 0.826444 | 2.704176e-54 | -8.615850e-47 |
| Msa0626280 | Msa0786340 | 0.804010 | 2.651479e-49 | -8.615850e-47 |
| Msa0648880 | Msa0786340 | 0.805894 | 1.071015e-49 | -8.615850e-47 |
| Msa0657610 | Msa0786340 | 0.814278 | 1.670930e-51 | -8.615850e-47 |
| Msa0657970 | Msa0786340 | 0.829220 | 5.814416e-55 | -8.615850e-47 |
| Msa0658570 | Msa0786340 | 0.815765 | 7.819259e-52 | -8.615850e-47 |
| Msa0661650 | Msa0786340 | 0.839999 | 1.132110e-57 | -8.615850e-47 |
| Msa0683510 | Msa0786340 | 0.813495 | 2.487279e-51 | -8.615850e-47 |
| Msa0693380 | Msa0786340 | 0.826001 | 3.447047e-54 | -8.615850e-47 |
| Msa0724210 | Msa0786340 | 0.827819 | 1.266948e-54 | -8.615850e-47 |
| Msa0731940 | Msa0786340 | 0.804877 | 1.749490e-49 | -8.615850e-47 |
| Msa0735170 | Msa0786340 | 0.804362 | 2.240761e-49 | -8.615850e-47 |
| Msa0759410 | Msa0786340 | 0.804600 | 1.998409e-49 | -8.615850e-47 |
| Msa0760130 | Msa0786340 | 0.803472 | 3.430145e-49 | -8.615850e-47 |
| Msa0786340 | Msa0806090 | 0.803223 | 3.862117e-49 | -8.615850e-47 |
| Msa0786340 | Msa0810220 | 0.805134 | 1.545691e-49 | -8.615850e-47 |
| Msa0786340 | Msa0816710 | 0.821348 | 4.236010e-53 | -8.615850e-47 |
| Msa0786340 | Msa0867890 | 0.817754 | 2.798749e-52 | -8.615850e-47 |
| Msa0786340 | Msa0870530 | 0.813001 | 3.192464e-51 | -8.615850e-47 |
| Msa0786340 | Msa0880140 | 0.818911 | 1.530637e-52 | -8.615850e-47 |
| Msa0786340 | Msa0891040 | 0.805388 | 1.367536e-49 | -8.615850e-47 |
| Msa0786340 | Msa0903700 | 0.807604 | 4.660923e-50 | -8.615850e-47 |
| Msa0786340 | Msa0907070 | 0.826596 | 2.486937e-54 | -8.615850e-47 |
| Msa0786340 | Msa0908050 | 0.818455 | 1.942903e-52 | -8.615850e-47 |
| Msa0786340 | Msa0909120 | 0.817291 | 3.558495e-52 | -8.615850e-47 |
| Msa0786340 | Msa0926890 | 0.817799 | 2.734245e-52 | -8.615850e-47 |
| Msa0786340 | Msa0947660 | 0.808402 | 3.153096e-50 | -8.615850e-47 |
| Msa0786340 | Msa0959360 | 0.800599 | 1.336086e-48 | -8.615850e-47 |
| Msa0786340 | Msa0969520 | 0.805439 | 1.334125e-49 | -8.615850e-47 |
| Msa0786340 | Msa0973150 | 0.802591 | 5.217970e-49 | -8.615850e-47 |
| Msa0786340 | Msa0990960 | 0.805543 | 1.268913e-49 | -8.615850e-47 |
| Msa0786340 | Msa1003620 | 0.807840 | 4.153314e-50 | -8.615850e-47 |
| Msa0786340 | Msa1014540 | 0.830118 | 3.516486e-55 | -8.615850e-47 |
| Msa0786340 | Msa1075220 | -0.817059 | 4.012475e-52 | -8.615850e-47 |
| Msa0786340 | Msa1082500 | 0.845148 | 4.865712e-59 | -8.615850e-47 |
| Msa0786340 | Msa1085200 | 0.805603 | 1.232865e-49 | -8.615850e-47 |
| Msa0786340 | Msa1162550 | -0.811840 | 5.723158e-51 | -8.615850e-47 |
| Msa0786340 | Msa1186060 | 0.814757 | 1.309260e-51 | -8.615850e-47 |
| Msa0786340 | Msa1238930 | 0.811543 | 6.642879e-51 | -8.615850e-47 |
| Msa0786340 | Msa1249490 | 0.812426 | 4.265898e-51 | -8.615850e-47 |
| Msa0786340 | Msa1278840 | 0.807184 | 5.720603e-50 | -8.615850e-47 |
| Msa0786340 | Msa1282580 | -0.806179 | 9.325274e-50 | -8.615850e-47 |
| Msa0786340 | Msa1283860 | 0.816023 | 6.846682e-52 | -8.615850e-47 |
| Msa0786340 | Msa1284680 | 0.805626 | 1.219229e-49 | -8.615850e-47 |
| Msa0786340 | Msa1306850 | 0.808060 | 3.728353e-50 | -8.615850e-47 |
| Msa0786340 | Msa1313150 | 0.810021 | 1.417823e-50 | -8.615850e-47 |
| Msa0786340 | Msa1376890 | 0.802430 | 5.631436e-49 | -8.615850e-47 |
| Msa0786340 | Msa1392240 | 0.807366 | 5.234449e-50 | -8.615850e-47 |
| Msa0786340 | Msa1392260 | 0.803688 | 3.093054e-49 | -8.615850e-47 |
| Msa0786340 | Msa1409870 | 0.815603 | 8.493854e-52 | -8.615850e-47 |
| Msa0786340 | Msa1423880 | 0.826937 | 2.062624e-54 | -8.615850e-47 |
| Msa0786340 | Msa1435420 | 0.800043 | 1.733926e-48 | -8.615850e-47 |
| Msa0786340 | Msa1438970 | 0.806238 | 9.065773e-50 | -8.615850e-47 |
| Msa0786340 | Msa1440560 | 0.805567 | 1.254547e-49 | -8.615850e-47 |
| Msa0786340 | Msa1452120 | 0.821294 | 4.358310e-53 | -8.615850e-47 |
| Msa0786340 | Msa1453320 | 0.812629 | 3.850049e-51 | -8.615850e-47 |
| Msa0786340 | Msa1466540 | 0.807247 | 5.549153e-50 | -8.615850e-47 |
| Msa0157290 | Msa0786340 | 0.818605 | 1.796737e-52 | -8.615850e-47 |
| Msa0170140 | Msa0786340 | 0.803584 | 3.251795e-49 | -8.615850e-47 |
| Msa0191250 | Msa0786340 | 0.801099 | 1.056188e-48 | -8.615850e-47 |
| Msa0201070 | Msa0786340 | 0.808916 | 2.447817e-50 | -8.615850e-47 |
| Msa0212990 | Msa0786340 | 0.804556 | 2.040911e-49 | -8.615850e-47 |
| Msa0215320 | Msa0786340 | -0.818853 | 1.578003e-52 | -8.615850e-47 |
| Msa0216910 | Msa0786340 | 0.804516 | 2.080334e-49 | -8.615850e-47 |
| Msa0227470 | Msa0786340 | 0.821114 | 4.795790e-53 | -8.615850e-47 |
| Msa0376590 | Msa0786340 | 0.811536 | 6.665440e-51 | -8.615850e-47 |
| Msa0388960 | Msa0786340 | 0.815816 | 7.614316e-52 | -8.615850e-47 |
| Msa0392510 | Msa0786340 | 0.800746 | 1.246924e-48 | -8.615850e-47 |
| Msa0410650 | Msa0786340 | 0.806732 | 7.131659e-50 | -8.615850e-47 |
| Msa0432300 | Msa0786340 | 0.804307 | 2.299909e-49 | -8.615850e-47 |
| Msa0443260 | Msa0786340 | 0.816279 | 6.000680e-52 | -8.615850e-47 |
| Msa0466390 | Msa0786340 | 0.800959 | 1.128090e-48 | -8.615850e-47 |
| Msa0243710 | Msa0786340 | 0.807470 | 4.975682e-50 | -8.615850e-47 |
| Msa0244860 | Msa0786340 | 0.802474 | 5.515217e-49 | -8.615850e-47 |
| Msa0283450 | Msa0786340 | 0.815870 | 7.408589e-52 | -8.615850e-47 |
| Msa0284520 | Msa0786340 | 0.807208 | 5.656018e-50 | -8.615850e-47 |
| Msa0305700 | Msa0786340 | 0.808727 | 2.686554e-50 | -8.615850e-47 |
| Msa0332000 | Msa0786340 | 0.807112 | 5.925491e-50 | -8.615850e-47 |
| Msa0338110 | Msa0786340 | 0.803290 | 3.740410e-49 | -8.615850e-47 |
| Msa0340450 | Msa0786340 | 0.819309 | 1.242771e-52 | -8.615850e-47 |
| Msa0341540 | Msa0786340 | 0.801288 | 9.661807e-49 | -8.615850e-47 |
| Msa0350990 | Msa0786340 | 0.800425 | 1.450347e-48 | -8.615850e-47 |
| Msa0351030 | Msa0786340 | 0.803757 | 2.994044e-49 | -8.615850e-47 |
| Msa0484780 | Msa0786340 | 0.821411 | 4.095031e-53 | -8.615850e-47 |
| Msa0495330 | Msa0786340 | 0.806856 | 6.712598e-50 | -8.615850e-47 |
| Msa0512900 | Msa0786340 | 0.802134 | 6.480901e-49 | -8.615850e-47 |
| Msa0516370 | Msa0786340 | 0.811496 | 6.800796e-51 | -8.615850e-47 |
| Msa0520700 | Msa0786340 | 0.825313 | 5.017639e-54 | -8.615850e-47 |
| Msa0531180 | Msa0786340 | 0.801587 | 8.393631e-49 | -8.615850e-47 |
| Msa0555020 | Msa0786340 | 0.814765 | 1.304087e-51 | -8.615850e-47 |
| Msa0567020 | Msa0786340 | 0.800002 | 1.767509e-48 | -8.615850e-47 |
| Msa0572420 | Msa0786340 | 0.823135 | 1.629891e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786340 | MtrunA17_Chr5g0443111 | 96.774 | 62 | 2 | 0 | 1 | 62 | 1 | 62 | 8.12e-37 | 125 |
| Msa0786340 | MtrunA17_Chr4g0052091 | 50.877 | 57 | 28 | 0 | 6 | 62 | 8 | 64 | 7.06e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786340 | AT3G59090.1 | 50.000 | 62 | 30 | 1 | 2 | 63 | 11 | 71 | 5.42e-16 | 70.5 |
| Msa0786340 | AT3G59090.2 | 50.000 | 62 | 30 | 1 | 2 | 63 | 11 | 71 | 6.53e-16 | 70.1 |
Find 22 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATCAAATGTGATATA+GGG | 0.261239 | 5_2:-71786008 | None:intergenic |
| ATTCTCATCAAATGTGATAT+AGG | 0.293999 | 5_2:-71786009 | None:intergenic |
| AATAAACTAACAAGTTGTTT+TGG | 0.305227 | 5_2:-71784472 | None:intergenic |
| GTAGCTCTGGCTTGTGTTGA+TGG | 0.329717 | 5_2:+71784576 | Msa0786340:CDS |
| AATCTTAGTCTTACCTAAGT+TGG | 0.379035 | 5_2:-71785958 | None:intergenic |
| AACTTGTTAGTTTATTTGTC+TGG | 0.379307 | 5_2:+71784479 | Msa0786340:five_prime_UTR |
| CACGTGCGAAGTCGACAAAT+TGG | 0.395153 | 5_2:+71785699 | Msa0786340:CDS |
| TGCCTTCATTGCATTTGCTC+AGG | 0.405627 | 5_2:+71784605 | Msa0786340:CDS |
| CTATCACATGGCAGGTCCTC+AGG | 0.426295 | 5_2:+71785673 | Msa0786340:intron |
| ATTTGTCTGGTAAGGTGAAA+AGG | 0.429535 | 5_2:+71784492 | Msa0786340:five_prime_UTR |
| ATGGTTGGCACTTCCAACTT+AGG | 0.432156 | 5_2:+71785945 | Msa0786340:CDS |
| GTTAGTTTATTTGTCTGGTA+AGG | 0.447905 | 5_2:+71784484 | Msa0786340:five_prime_UTR |
| GATCATTCTCAATGTAGCTC+TGG | 0.451467 | 5_2:+71784563 | Msa0786340:CDS |
| CAGGTACTTCATATCATGGT+TGG | 0.457856 | 5_2:+71785930 | Msa0786340:intron |
| AACCTGAGCAAATGCAATGA+AGG | 0.528739 | 5_2:-71784607 | None:intergenic |
| AGACAGTGTGACAGATAGAC+AGG | 0.535089 | 5_2:-71784401 | None:intergenic |
| TGTAATCTATGACTGAGGAT+TGG | 0.536227 | 5_2:+71784520 | Msa0786340:exon |
| TGCGAAGTCGACAAATTGGT+TGG | 0.543303 | 5_2:+71785703 | Msa0786340:CDS |
| ATCGTTGTAATCTATGACTG+AGG | 0.558926 | 5_2:+71784515 | Msa0786340:exon |
| TCTCATCAAATGTGATATAG+GGG | 0.585129 | 5_2:-71786007 | None:intergenic |
| TATAGGACTGACTATGTACA+AGG | 0.616583 | 5_2:-71784365 | None:intergenic |
| GACTTCGCACGTGAATCCTG+AGG | 0.695769 | 5_2:-71785689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTTGAACAATAAAAAT+TGG | - | chr5_2:71785179-71785198 | None:intergenic | 15.0% |
| !! | AAAAGAAACAAGAAATTATT+TGG | - | chr5_2:71785628-71785647 | None:intergenic | 15.0% |
| !! | GTTATTTGAACAATAAAAAT+TGG | - | chr5_2:71785179-71785198 | None:intergenic | 15.0% |
| !! | AAAAGAAACAAGAAATTATT+TGG | - | chr5_2:71785628-71785647 | None:intergenic | 15.0% |
| !!! | AATAAACTAACAAGTTGTTT+TGG | - | chr5_2:71784475-71784494 | None:intergenic | 20.0% |
| !! | AACTTCATTAAACATGAATT+TGG | + | chr5_2:71784956-71784975 | Msa0786340:intron | 20.0% |
| !! | ATTAAACATGAATTTGGATA+TGG | + | chr5_2:71784962-71784981 | Msa0786340:intron | 20.0% |
| !! | TTTATGCTATATAATCTTTC+CGG | + | chr5_2:71785404-71785423 | Msa0786340:intron | 20.0% |
| !! | AAGAAATGTTATAGAATAAG+AGG | - | chr5_2:71785843-71785862 | None:intergenic | 20.0% |
| !!! | TATAATAGCTACTATTTTTC+AGG | + | chr5_2:71785911-71785930 | Msa0786340:intron | 20.0% |
| !!! | AATAAACTAACAAGTTGTTT+TGG | - | chr5_2:71784475-71784494 | None:intergenic | 20.0% |
| !! | AACTTCATTAAACATGAATT+TGG | + | chr5_2:71784956-71784975 | Msa0786340:intron | 20.0% |
| !! | ATTAAACATGAATTTGGATA+TGG | + | chr5_2:71784962-71784981 | Msa0786340:intron | 20.0% |
| !! | TTTATGCTATATAATCTTTC+CGG | + | chr5_2:71785404-71785423 | Msa0786340:intron | 20.0% |
| !! | AAGAAATGTTATAGAATAAG+AGG | - | chr5_2:71785843-71785862 | None:intergenic | 20.0% |
| !!! | TATAATAGCTACTATTTTTC+AGG | + | chr5_2:71785911-71785930 | Msa0786340:intron | 20.0% |
| !! | TTATTGTGTTTTTCTTCTTC+TGG | + | chr5_2:71784439-71784458 | Msa0786340:five_prime_UTR | 25.0% |
| !!! | AACTTGTTAGTTTATTTGTC+TGG | + | chr5_2:71784479-71784498 | Msa0786340:five_prime_UTR | 25.0% |
| !!! | TCAAAATCCATTTTTTCCAT+TGG | + | chr5_2:71784742-71784761 | Msa0786340:intron | 25.0% |
| ! | TATGGTTAACCATAATTTAC+AGG | + | chr5_2:71784980-71784999 | Msa0786340:intron | 25.0% |
| ! | ATTTGAAGATCTTGAAATTG+TGG | + | chr5_2:71785020-71785039 | Msa0786340:intron | 25.0% |
| ! | AAATTGTGGTTAATGAAGTT+AGG | + | chr5_2:71785034-71785053 | Msa0786340:intron | 25.0% |
| ! | TATATCTATTAACCATTTGC+TGG | + | chr5_2:71785092-71785111 | Msa0786340:intron | 25.0% |
| ! | TTTGTAAATCTTACTTGCAA+AGG | + | chr5_2:71785239-71785258 | Msa0786340:intron | 25.0% |
| !!! | AATTTTTTTGCACTATCACA+TGG | + | chr5_2:71785661-71785680 | Msa0786340:intron | 25.0% |
| ! | AATGTTATAGAATAAGAGGA+GGG | - | chr5_2:71785839-71785858 | None:intergenic | 25.0% |
| ! | AAATGTTATAGAATAAGAGG+AGG | - | chr5_2:71785840-71785859 | None:intergenic | 25.0% |
| ! | ATGAAAGTAAGGAACATTAT+TGG | - | chr5_2:71785874-71785893 | None:intergenic | 25.0% |
| ! | TTCCTTACTTTCATGAAATA+GGG | + | chr5_2:71785880-71785899 | Msa0786340:intron | 25.0% |
| ! | TTCTCATCAAATGTGATATA+GGG | - | chr5_2:71786011-71786030 | None:intergenic | 25.0% |
| ! | ATTCTCATCAAATGTGATAT+AGG | - | chr5_2:71786012-71786031 | None:intergenic | 25.0% |
| !! | TTATTGTGTTTTTCTTCTTC+TGG | + | chr5_2:71784439-71784458 | Msa0786340:five_prime_UTR | 25.0% |
| !!! | AACTTGTTAGTTTATTTGTC+TGG | + | chr5_2:71784479-71784498 | Msa0786340:five_prime_UTR | 25.0% |
| !!! | TCAAAATCCATTTTTTCCAT+TGG | + | chr5_2:71784742-71784761 | Msa0786340:intron | 25.0% |
| ! | TATGGTTAACCATAATTTAC+AGG | + | chr5_2:71784980-71784999 | Msa0786340:intron | 25.0% |
| ! | ATTTGAAGATCTTGAAATTG+TGG | + | chr5_2:71785020-71785039 | Msa0786340:intron | 25.0% |
| ! | AAATTGTGGTTAATGAAGTT+AGG | + | chr5_2:71785034-71785053 | Msa0786340:intron | 25.0% |
| ! | TATATCTATTAACCATTTGC+TGG | + | chr5_2:71785092-71785111 | Msa0786340:intron | 25.0% |
| ! | TTTGTAAATCTTACTTGCAA+AGG | + | chr5_2:71785239-71785258 | Msa0786340:intron | 25.0% |
| !!! | AATTTTTTTGCACTATCACA+TGG | + | chr5_2:71785661-71785680 | Msa0786340:intron | 25.0% |
| ! | AATGTTATAGAATAAGAGGA+GGG | - | chr5_2:71785839-71785858 | None:intergenic | 25.0% |
| ! | AAATGTTATAGAATAAGAGG+AGG | - | chr5_2:71785840-71785859 | None:intergenic | 25.0% |
| ! | ATGAAAGTAAGGAACATTAT+TGG | - | chr5_2:71785874-71785893 | None:intergenic | 25.0% |
| ! | TTCCTTACTTTCATGAAATA+GGG | + | chr5_2:71785880-71785899 | Msa0786340:intron | 25.0% |
| ! | TTCTCATCAAATGTGATATA+GGG | - | chr5_2:71786011-71786030 | None:intergenic | 25.0% |
| ! | ATTCTCATCAAATGTGATAT+AGG | - | chr5_2:71786012-71786031 | None:intergenic | 25.0% |
| !!! | AACTAACAAGTTGTTTTGGA+TGG | - | chr5_2:71784471-71784490 | None:intergenic | 30.0% |
| ! | GTTAGTTTATTTGTCTGGTA+AGG | + | chr5_2:71784484-71784503 | Msa0786340:five_prime_UTR | 30.0% |
| GATATGCTTGAATGCTAAAA+AGG | - | chr5_2:71784657-71784676 | None:intergenic | 30.0% | |
| TGCTTAAAGTAAGTAGTATC+TGG | + | chr5_2:71784702-71784721 | Msa0786340:intron | 30.0% | |
| GCTTAAAGTAAGTAGTATCT+GGG | + | chr5_2:71784703-71784722 | Msa0786340:intron | 30.0% | |
| CTTAAAGTAAGTAGTATCTG+GGG | + | chr5_2:71784704-71784723 | Msa0786340:intron | 30.0% | |
| TTCAATATAGTCACAAGTGT+CGG | - | chr5_2:71784846-71784865 | None:intergenic | 30.0% | |
| ! | TTATTAGTGTCTGTCTTGTT+TGG | + | chr5_2:71784888-71784907 | Msa0786340:intron | 30.0% |
| CATGTTTAATGAAGTTACGT+TGG | - | chr5_2:71784952-71784971 | None:intergenic | 30.0% | |
| AAGATCTTCAAATCAACATG+TGG | - | chr5_2:71785013-71785032 | None:intergenic | 30.0% | |
| GGTTAATGAAGTTAGGATAA+TGG | + | chr5_2:71785041-71785060 | Msa0786340:intron | 30.0% | |
| TAAATCTTACTTGCAAAGGT+AGG | + | chr5_2:71785243-71785262 | Msa0786340:intron | 30.0% | |
| AAATCTTACTTGCAAAGGTA+GGG | + | chr5_2:71785244-71785263 | Msa0786340:intron | 30.0% | |
| !! | TAGATTACTTGTTTTCTGTG+AGG | + | chr5_2:71785301-71785320 | Msa0786340:intron | 30.0% |
| !! | AGATTACTTGTTTTCTGTGA+GGG | + | chr5_2:71785302-71785321 | Msa0786340:intron | 30.0% |
| ! | TTTTCTCACTCCTTTTTTTC+AGG | - | chr5_2:71785439-71785458 | None:intergenic | 30.0% |
| CTGGTATTCAGGATTAAAAT+CGG | - | chr5_2:71785587-71785606 | None:intergenic | 30.0% | |
| GATTATTGTAACTAAGCTTC+TGG | - | chr5_2:71785606-71785625 | None:intergenic | 30.0% | |
| ! | ATCCGATACTACTAACTTTT+TGG | - | chr5_2:71785734-71785753 | None:intergenic | 30.0% |
| GTTCCTTACTTTCATGAAAT+AGG | + | chr5_2:71785879-71785898 | Msa0786340:intron | 30.0% | |
| AACCCTATTTCATGAAAGTA+AGG | - | chr5_2:71785885-71785904 | None:intergenic | 30.0% | |
| !!! | TTTTCAGGTACTTCATATCA+TGG | + | chr5_2:71785926-71785945 | Msa0786340:intron | 30.0% |
| !! | AATCTTAGTCTTACCTAAGT+TGG | - | chr5_2:71785961-71785980 | None:intergenic | 30.0% |
| TCTCATCAAATGTGATATAG+GGG | - | chr5_2:71786010-71786029 | None:intergenic | 30.0% | |
| !!! | AACTAACAAGTTGTTTTGGA+TGG | - | chr5_2:71784471-71784490 | None:intergenic | 30.0% |
| ! | GTTAGTTTATTTGTCTGGTA+AGG | + | chr5_2:71784484-71784503 | Msa0786340:five_prime_UTR | 30.0% |
| GATATGCTTGAATGCTAAAA+AGG | - | chr5_2:71784657-71784676 | None:intergenic | 30.0% | |
| TGCTTAAAGTAAGTAGTATC+TGG | + | chr5_2:71784702-71784721 | Msa0786340:intron | 30.0% | |
| GCTTAAAGTAAGTAGTATCT+GGG | + | chr5_2:71784703-71784722 | Msa0786340:intron | 30.0% | |
| CTTAAAGTAAGTAGTATCTG+GGG | + | chr5_2:71784704-71784723 | Msa0786340:intron | 30.0% | |
| TTCAATATAGTCACAAGTGT+CGG | - | chr5_2:71784846-71784865 | None:intergenic | 30.0% | |
| ! | TTATTAGTGTCTGTCTTGTT+TGG | + | chr5_2:71784888-71784907 | Msa0786340:intron | 30.0% |
| CATGTTTAATGAAGTTACGT+TGG | - | chr5_2:71784952-71784971 | None:intergenic | 30.0% | |
| AAGATCTTCAAATCAACATG+TGG | - | chr5_2:71785013-71785032 | None:intergenic | 30.0% | |
| GGTTAATGAAGTTAGGATAA+TGG | + | chr5_2:71785041-71785060 | Msa0786340:intron | 30.0% | |
| TAAATCTTACTTGCAAAGGT+AGG | + | chr5_2:71785243-71785262 | Msa0786340:intron | 30.0% | |
| AAATCTTACTTGCAAAGGTA+GGG | + | chr5_2:71785244-71785263 | Msa0786340:intron | 30.0% | |
| !! | TAGATTACTTGTTTTCTGTG+AGG | + | chr5_2:71785301-71785320 | Msa0786340:intron | 30.0% |
| !! | AGATTACTTGTTTTCTGTGA+GGG | + | chr5_2:71785302-71785321 | Msa0786340:intron | 30.0% |
| ! | TTTTCTCACTCCTTTTTTTC+AGG | - | chr5_2:71785439-71785458 | None:intergenic | 30.0% |
| CTGGTATTCAGGATTAAAAT+CGG | - | chr5_2:71785587-71785606 | None:intergenic | 30.0% | |
| GATTATTGTAACTAAGCTTC+TGG | - | chr5_2:71785606-71785625 | None:intergenic | 30.0% | |
| ! | ATCCGATACTACTAACTTTT+TGG | - | chr5_2:71785734-71785753 | None:intergenic | 30.0% |
| GTTCCTTACTTTCATGAAAT+AGG | + | chr5_2:71785879-71785898 | Msa0786340:intron | 30.0% | |
| AACCCTATTTCATGAAAGTA+AGG | - | chr5_2:71785885-71785904 | None:intergenic | 30.0% | |
| !!! | TTTTCAGGTACTTCATATCA+TGG | + | chr5_2:71785926-71785945 | Msa0786340:intron | 30.0% |
| !! | AATCTTAGTCTTACCTAAGT+TGG | - | chr5_2:71785961-71785980 | None:intergenic | 30.0% |
| TCTCATCAAATGTGATATAG+GGG | - | chr5_2:71786010-71786029 | None:intergenic | 30.0% | |
| TATAGGACTGACTATGTACA+AGG | - | chr5_2:71784368-71784387 | None:intergenic | 35.0% | |
| !!! | CAGGTTTTGTTAGTTGGTAT+AGG | - | chr5_2:71784385-71784404 | None:intergenic | 35.0% |
| !!! | GATAGACAGGTTTTGTTAGT+TGG | - | chr5_2:71784391-71784410 | None:intergenic | 35.0% |
| ATTTGTCTGGTAAGGTGAAA+AGG | + | chr5_2:71784492-71784511 | Msa0786340:five_prime_UTR | 35.0% | |
| ATCGTTGTAATCTATGACTG+AGG | + | chr5_2:71784515-71784534 | Msa0786340:exon | 35.0% | |
| TGTAATCTATGACTGAGGAT+TGG | + | chr5_2:71784520-71784539 | Msa0786340:exon | 35.0% | |
| ACACTCACCAATGGAAAAAA+TGG | - | chr5_2:71784752-71784771 | None:intergenic | 35.0% | |
| ! | TTTTTCCATTGGTGAGTGTA+CGG | + | chr5_2:71784753-71784772 | Msa0786340:intron | 35.0% |
| !! | TGTCTTGTTTGGTGTATACT+AGG | + | chr5_2:71784899-71784918 | Msa0786340:intron | 35.0% |
| GTTTAATGAAGTTACGTTGG+TGG | - | chr5_2:71784949-71784968 | None:intergenic | 35.0% | |
| GGTTGAACACCTGTAAATTA+TGG | - | chr5_2:71784992-71785011 | None:intergenic | 35.0% | |
| ! | GATTAGTTACATCCAGCAAA+TGG | - | chr5_2:71785107-71785126 | None:intergenic | 35.0% |
| ! | TAACATTTTTACCTCCGTCT+GGG | - | chr5_2:71785339-71785358 | None:intergenic | 35.0% |
| ! | ATAACATTTTTACCTCCGTC+TGG | - | chr5_2:71785340-71785359 | None:intergenic | 35.0% |
| !! | TGAGTAGAGTTTTATGCAGA+AGG | - | chr5_2:71785379-71785398 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGGACAAACTCAC+CGG | - | chr5_2:71785426-71785445 | None:intergenic | 35.0% |
| GTGAGTTTGTCCTGAAAAAA+AGG | + | chr5_2:71785426-71785445 | Msa0786340:intron | 35.0% | |
| TAACTAAGCTTCTGGTATTC+AGG | - | chr5_2:71785598-71785617 | None:intergenic | 35.0% | |
| CGCCAAAAAGTTAGTAGTAT+CGG | + | chr5_2:71785729-71785748 | Msa0786340:intron | 35.0% | |
| CATTCTAACATTCTGTGCTT+TGG | + | chr5_2:71785798-71785817 | Msa0786340:intron | 35.0% | |
| TATAGGACTGACTATGTACA+AGG | - | chr5_2:71784368-71784387 | None:intergenic | 35.0% | |
| !!! | CAGGTTTTGTTAGTTGGTAT+AGG | - | chr5_2:71784385-71784404 | None:intergenic | 35.0% |
| !!! | GATAGACAGGTTTTGTTAGT+TGG | - | chr5_2:71784391-71784410 | None:intergenic | 35.0% |
| ATTTGTCTGGTAAGGTGAAA+AGG | + | chr5_2:71784492-71784511 | Msa0786340:five_prime_UTR | 35.0% | |
| ATCGTTGTAATCTATGACTG+AGG | + | chr5_2:71784515-71784534 | Msa0786340:exon | 35.0% | |
| TGTAATCTATGACTGAGGAT+TGG | + | chr5_2:71784520-71784539 | Msa0786340:exon | 35.0% | |
| ACACTCACCAATGGAAAAAA+TGG | - | chr5_2:71784752-71784771 | None:intergenic | 35.0% | |
| ! | TTTTTCCATTGGTGAGTGTA+CGG | + | chr5_2:71784753-71784772 | Msa0786340:intron | 35.0% |
| !! | TGTCTTGTTTGGTGTATACT+AGG | + | chr5_2:71784899-71784918 | Msa0786340:intron | 35.0% |
| GTTTAATGAAGTTACGTTGG+TGG | - | chr5_2:71784949-71784968 | None:intergenic | 35.0% | |
| GGTTGAACACCTGTAAATTA+TGG | - | chr5_2:71784992-71785011 | None:intergenic | 35.0% | |
| ! | GATTAGTTACATCCAGCAAA+TGG | - | chr5_2:71785107-71785126 | None:intergenic | 35.0% |
| ! | TAACATTTTTACCTCCGTCT+GGG | - | chr5_2:71785339-71785358 | None:intergenic | 35.0% |
| ! | ATAACATTTTTACCTCCGTC+TGG | - | chr5_2:71785340-71785359 | None:intergenic | 35.0% |
| !! | TGAGTAGAGTTTTATGCAGA+AGG | - | chr5_2:71785379-71785398 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGGACAAACTCAC+CGG | - | chr5_2:71785426-71785445 | None:intergenic | 35.0% |
| GTGAGTTTGTCCTGAAAAAA+AGG | + | chr5_2:71785426-71785445 | Msa0786340:intron | 35.0% | |
| TAACTAAGCTTCTGGTATTC+AGG | - | chr5_2:71785598-71785617 | None:intergenic | 35.0% | |
| CGCCAAAAAGTTAGTAGTAT+CGG | + | chr5_2:71785729-71785748 | Msa0786340:intron | 35.0% | |
| CATTCTAACATTCTGTGCTT+TGG | + | chr5_2:71785798-71785817 | Msa0786340:intron | 35.0% | |
| GATCATTCTCAATGTAGCTC+TGG | + | chr5_2:71784563-71784582 | Msa0786340:CDS | 40.0% | |
| AACCTGAGCAAATGCAATGA+AGG | - | chr5_2:71784610-71784629 | None:intergenic | 40.0% | |
| AAAGTAAGTAGTATCTGGGG+TGG | + | chr5_2:71784707-71784726 | Msa0786340:intron | 40.0% | |
| ! | AAGTAAGTAGTATCTGGGGT+GGG | + | chr5_2:71784708-71784727 | Msa0786340:intron | 40.0% |
| TTCTGATCGAATGAGTGTTC+CGG | + | chr5_2:71784780-71784799 | Msa0786340:intron | 40.0% | |
| CAGAAGGATACTACACTGAA+AGG | - | chr5_2:71785363-71785382 | None:intergenic | 40.0% | |
| ! | TTTTTGCACTATCACATGGC+AGG | + | chr5_2:71785665-71785684 | Msa0786340:intron | 40.0% |
| AGAGGAGGGTAAAAATTCTC+AGG | - | chr5_2:71785825-71785844 | None:intergenic | 40.0% | |
| CAGGTACTTCATATCATGGT+TGG | + | chr5_2:71785930-71785949 | Msa0786340:intron | 40.0% | |
| GATCATTCTCAATGTAGCTC+TGG | + | chr5_2:71784563-71784582 | Msa0786340:CDS | 40.0% | |
| AACCTGAGCAAATGCAATGA+AGG | - | chr5_2:71784610-71784629 | None:intergenic | 40.0% | |
| AAAGTAAGTAGTATCTGGGG+TGG | + | chr5_2:71784707-71784726 | Msa0786340:intron | 40.0% | |
| ! | AAGTAAGTAGTATCTGGGGT+GGG | + | chr5_2:71784708-71784727 | Msa0786340:intron | 40.0% |
| TTCTGATCGAATGAGTGTTC+CGG | + | chr5_2:71784780-71784799 | Msa0786340:intron | 40.0% | |
| CAGAAGGATACTACACTGAA+AGG | - | chr5_2:71785363-71785382 | None:intergenic | 40.0% | |
| ! | TTTTTGCACTATCACATGGC+AGG | + | chr5_2:71785665-71785684 | Msa0786340:intron | 40.0% |
| AGAGGAGGGTAAAAATTCTC+AGG | - | chr5_2:71785825-71785844 | None:intergenic | 40.0% | |
| CAGGTACTTCATATCATGGT+TGG | + | chr5_2:71785930-71785949 | Msa0786340:intron | 40.0% | |
| AGACAGTGTGACAGATAGAC+AGG | - | chr5_2:71784404-71784423 | None:intergenic | 45.0% | |
| TGCCTTCATTGCATTTGCTC+AGG | + | chr5_2:71784605-71784624 | Msa0786340:CDS | 45.0% | |
| ! | AGTAAGTAGTATCTGGGGTG+GGG | + | chr5_2:71784709-71784728 | Msa0786340:intron | 45.0% |
| AGGTAGGGAGTAAGTTCTCT+TGG | + | chr5_2:71785259-71785278 | Msa0786340:intron | 45.0% | |
| ! | GGGATTTAGAGTAACCCAGA+CGG | + | chr5_2:71785322-71785341 | Msa0786340:intron | 45.0% |
| ! | ATTTAGAGTAACCCAGACGG+AGG | + | chr5_2:71785325-71785344 | Msa0786340:intron | 45.0% |
| TGCGAAGTCGACAAATTGGT+TGG | + | chr5_2:71785703-71785722 | Msa0786340:CDS | 45.0% | |
| ATGGTTGGCACTTCCAACTT+AGG | + | chr5_2:71785945-71785964 | Msa0786340:CDS | 45.0% | |
| AGACAGTGTGACAGATAGAC+AGG | - | chr5_2:71784404-71784423 | None:intergenic | 45.0% | |
| TGCCTTCATTGCATTTGCTC+AGG | + | chr5_2:71784605-71784624 | Msa0786340:CDS | 45.0% | |
| ! | AGTAAGTAGTATCTGGGGTG+GGG | + | chr5_2:71784709-71784728 | Msa0786340:intron | 45.0% |
| AGGTAGGGAGTAAGTTCTCT+TGG | + | chr5_2:71785259-71785278 | Msa0786340:intron | 45.0% | |
| ! | GGGATTTAGAGTAACCCAGA+CGG | + | chr5_2:71785322-71785341 | Msa0786340:intron | 45.0% |
| ! | ATTTAGAGTAACCCAGACGG+AGG | + | chr5_2:71785325-71785344 | Msa0786340:intron | 45.0% |
| TGCGAAGTCGACAAATTGGT+TGG | + | chr5_2:71785703-71785722 | Msa0786340:CDS | 45.0% | |
| ATGGTTGGCACTTCCAACTT+AGG | + | chr5_2:71785945-71785964 | Msa0786340:CDS | 45.0% | |
| !! | GTAGCTCTGGCTTGTGTTGA+TGG | + | chr5_2:71784576-71784595 | Msa0786340:CDS | 50.0% |
| AGTGTCCGTACACTCACCAA+TGG | - | chr5_2:71784761-71784780 | None:intergenic | 50.0% | |
| CTGTCCGACATGACATGACA+CGG | + | chr5_2:71784818-71784837 | Msa0786340:intron | 50.0% | |
| CACGTGCGAAGTCGACAAAT+TGG | + | chr5_2:71785699-71785718 | Msa0786340:CDS | 50.0% | |
| !! | GTAGCTCTGGCTTGTGTTGA+TGG | + | chr5_2:71784576-71784595 | Msa0786340:CDS | 50.0% |
| AGTGTCCGTACACTCACCAA+TGG | - | chr5_2:71784761-71784780 | None:intergenic | 50.0% | |
| CTGTCCGACATGACATGACA+CGG | + | chr5_2:71784818-71784837 | Msa0786340:intron | 50.0% | |
| CACGTGCGAAGTCGACAAAT+TGG | + | chr5_2:71785699-71785718 | Msa0786340:CDS | 50.0% | |
| ATGTCGGACAGGACACGTGT+CGG | - | chr5_2:71784809-71784828 | None:intergenic | 55.0% | |
| CGTGTCATGTCATGTCGGAC+AGG | - | chr5_2:71784820-71784839 | None:intergenic | 55.0% | |
| ! | GGTGCCGTGTCATGTCATGT+CGG | - | chr5_2:71784825-71784844 | None:intergenic | 55.0% |
| CTATCACATGGCAGGTCCTC+AGG | + | chr5_2:71785673-71785692 | Msa0786340:intron | 55.0% | |
| GACTTCGCACGTGAATCCTG+AGG | - | chr5_2:71785692-71785711 | None:intergenic | 55.0% | |
| ATGTCGGACAGGACACGTGT+CGG | - | chr5_2:71784809-71784828 | None:intergenic | 55.0% | |
| CGTGTCATGTCATGTCGGAC+AGG | - | chr5_2:71784820-71784839 | None:intergenic | 55.0% | |
| ! | GGTGCCGTGTCATGTCATGT+CGG | - | chr5_2:71784825-71784844 | None:intergenic | 55.0% |
| CTATCACATGGCAGGTCCTC+AGG | + | chr5_2:71785673-71785692 | Msa0786340:intron | 55.0% | |
| GACTTCGCACGTGAATCCTG+AGG | - | chr5_2:71785692-71785711 | None:intergenic | 55.0% | |
| ACAGGACACGTGTCGGACAC+CGG | - | chr5_2:71784802-71784821 | None:intergenic | 60.0% | |
| ACAGGACACGTGTCGGACAC+CGG | - | chr5_2:71784802-71784821 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 71784321 | 71786047 | 71784321 | ID=Msa0786340;Name=Msa0786340 |
| chr5_2 | mRNA | 71784321 | 71786047 | 71784321 | ID=Msa0786340-mRNA-1;Parent=Msa0786340;Name=Msa0786340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=207|1|1|1|1|1|3|58|68 |
| chr5_2 | exon | 71784321 | 71784626 | 71784321 | ID=Msa0786340-mRNA-1:exon:21672;Parent=Msa0786340-mRNA-1 |
| chr5_2 | exon | 71785687 | 71785737 | 71785687 | ID=Msa0786340-mRNA-1:exon:21673;Parent=Msa0786340-mRNA-1 |
| chr5_2 | exon | 71785933 | 71786047 | 71785933 | ID=Msa0786340-mRNA-1:exon:21674;Parent=Msa0786340-mRNA-1 |
| chr5_2 | five_prime_UTR | 71784321 | 71784527 | 71784321 | ID=Msa0786340-mRNA-1:five_prime_utr;Parent=Msa0786340-mRNA-1 |
| chr5_2 | CDS | 71784528 | 71784626 | 71784528 | ID=Msa0786340-mRNA-1:cds;Parent=Msa0786340-mRNA-1 |
| chr5_2 | CDS | 71785687 | 71785737 | 71785687 | ID=Msa0786340-mRNA-1:cds;Parent=Msa0786340-mRNA-1 |
| chr5_2 | CDS | 71785933 | 71785989 | 71785933 | ID=Msa0786340-mRNA-1:cds;Parent=Msa0786340-mRNA-1 |
| chr5_2 | three_prime_UTR | 71785990 | 71786047 | 71785990 | ID=Msa0786340-mRNA-1:three_prime_utr;Parent=Msa0786340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
