Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605350 | XP_013456377.1 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.02e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605350 | sp|Q8W453|DIRL1_ARATH | 41.558 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 5.92e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0605350 | 0.860023 | 2.756267e-63 | -8.615850e-47 |
| Msa0013270 | Msa0605350 | 0.804004 | 2.660303e-49 | -8.615850e-47 |
| Msa0032130 | Msa0605350 | 0.804213 | 2.406125e-49 | -8.615850e-47 |
| Msa0043840 | Msa0605350 | 0.806396 | 8.394965e-50 | -8.615850e-47 |
| Msa0045620 | Msa0605350 | 0.820879 | 5.431553e-53 | -8.615850e-47 |
| Msa0050530 | Msa0605350 | 0.818462 | 1.935454e-52 | -8.615850e-47 |
| Msa0057860 | Msa0605350 | 0.845012 | 5.295759e-59 | -8.615850e-47 |
| Msa0073270 | Msa0605350 | 0.829529 | 4.892499e-55 | -8.615850e-47 |
| Msa0090500 | Msa0605350 | 0.816363 | 5.747833e-52 | -8.615850e-47 |
| Msa0092350 | Msa0605350 | 0.818273 | 2.136455e-52 | -8.615850e-47 |
| Msa0100600 | Msa0605350 | 0.816521 | 5.297108e-52 | -8.615850e-47 |
| Msa0100890 | Msa0605350 | 0.818104 | 2.332488e-52 | -8.615850e-47 |
| Msa0102920 | Msa0605350 | 0.861120 | 1.282323e-63 | -8.615850e-47 |
| Msa0106540 | Msa0605350 | 0.805155 | 1.530335e-49 | -8.615850e-47 |
| Msa0605350 | Msa0605520 | 0.807041 | 6.133771e-50 | -8.615850e-47 |
| Msa0605350 | Msa0610190 | 0.822668 | 2.094395e-53 | -8.615850e-47 |
| Msa0605350 | Msa0623310 | 0.824630 | 7.273133e-54 | -8.615850e-47 |
| Msa0605350 | Msa0623980 | 0.809357 | 1.969502e-50 | -8.615850e-47 |
| Msa0605350 | Msa0624050 | 0.802533 | 5.363222e-49 | -8.615850e-47 |
| Msa0605350 | Msa0626980 | 0.829599 | 4.702770e-55 | -8.615850e-47 |
| Msa0605350 | Msa0627360 | 0.831218 | 1.890309e-55 | -8.615850e-47 |
| Msa0605350 | Msa0646260 | 0.962494 | 6.052065e-121 | -8.615850e-47 |
| Msa0605350 | Msa0646440 | 0.800517 | 1.388784e-48 | -8.615850e-47 |
| Msa0605350 | Msa0663290 | 0.803009 | 4.277418e-49 | -8.615850e-47 |
| Msa0605350 | Msa0673940 | 0.855193 | 7.436074e-62 | -8.615850e-47 |
| Msa0605350 | Msa0676190 | 0.804741 | 1.867775e-49 | -8.615850e-47 |
| Msa0605350 | Msa0676200 | 0.840535 | 8.201555e-58 | -8.615850e-47 |
| Msa0605350 | Msa0685390 | -0.805154 | 1.530805e-49 | -8.615850e-47 |
| Msa0605350 | Msa0685610 | 0.842097 | 3.183787e-58 | -8.615850e-47 |
| Msa0605350 | Msa0708020 | 0.811678 | 6.207861e-51 | -8.615850e-47 |
| Msa0605350 | Msa0751720 | 0.823573 | 1.288206e-53 | -8.615850e-47 |
| Msa0605350 | Msa0756670 | -0.804849 | 1.773421e-49 | -8.615850e-47 |
| Msa0605350 | Msa0761830 | 0.826054 | 3.348204e-54 | -8.615850e-47 |
| Msa0605350 | Msa0831820 | 0.825927 | 3.588443e-54 | -8.615850e-47 |
| Msa0605350 | Msa0842180 | 0.805786 | 1.128289e-49 | -8.615850e-47 |
| Msa0605350 | Msa0870020 | 0.809109 | 2.226210e-50 | -8.615850e-47 |
| Msa0605350 | Msa0871420 | 0.821078 | 4.887676e-53 | -8.615850e-47 |
| Msa0605350 | Msa0876630 | 0.804323 | 2.282545e-49 | -8.615850e-47 |
| Msa0605350 | Msa0900830 | 0.819112 | 1.378013e-52 | -8.615850e-47 |
| Msa0605350 | Msa0929900 | 0.810975 | 8.822875e-51 | -8.615850e-47 |
| Msa0605350 | Msa0931370 | 0.820213 | 7.723595e-53 | -8.615850e-47 |
| Msa0605350 | Msa0936630 | 0.815032 | 1.138170e-51 | -8.615850e-47 |
| Msa0605350 | Msa0970040 | 0.815361 | 9.616050e-52 | -8.615850e-47 |
| Msa0605350 | Msa0970100 | 0.811939 | 5.447514e-51 | -8.615850e-47 |
| Msa0605350 | Msa1004720 | -0.800211 | 1.603319e-48 | -8.615850e-47 |
| Msa0605350 | Msa1011360 | 0.811439 | 6.997563e-51 | -8.615850e-47 |
| Msa0605350 | Msa1021560 | 0.817221 | 3.689435e-52 | -8.615850e-47 |
| Msa0605350 | Msa1026710 | 0.825927 | 3.588314e-54 | -8.615850e-47 |
| Msa0605350 | Msa1038860 | 0.815078 | 1.111204e-51 | -8.615850e-47 |
| Msa0605350 | Msa1057620 | -0.826482 | 2.647870e-54 | -8.615850e-47 |
| Msa0605350 | Msa1060300 | 0.820506 | 6.618318e-53 | -8.615850e-47 |
| Msa0605350 | Msa1085560 | 0.813714 | 2.225158e-51 | -8.615850e-47 |
| Msa0605350 | Msa1085680 | 0.861699 | 8.538708e-64 | -8.615850e-47 |
| Msa0605350 | Msa1105580 | 0.804541 | 2.056234e-49 | -8.615850e-47 |
| Msa0605350 | Msa1130770 | 0.828086 | 1.093204e-54 | -8.615850e-47 |
| Msa0605350 | Msa1144990 | 0.817891 | 2.606083e-52 | -8.615850e-47 |
| Msa0605350 | Msa1148930 | 0.810696 | 1.013869e-50 | -8.615850e-47 |
| Msa0605350 | Msa1154630 | 0.802404 | 5.702157e-49 | -8.615850e-47 |
| Msa0605350 | Msa1162360 | 0.803920 | 2.768878e-49 | -8.615850e-47 |
| Msa0605350 | Msa1192360 | 0.821347 | 4.237605e-53 | -8.615850e-47 |
| Msa0605350 | Msa1197720 | 0.804659 | 1.942614e-49 | -8.615850e-47 |
| Msa0605350 | Msa1200360 | 0.810494 | 1.120918e-50 | -8.615850e-47 |
| Msa0605350 | Msa1217890 | 0.833986 | 3.890576e-56 | -8.615850e-47 |
| Msa0605350 | Msa1220720 | 0.837731 | 4.371081e-57 | -8.615850e-47 |
| Msa0605350 | Msa1231440 | 0.815537 | 8.785527e-52 | -8.615850e-47 |
| Msa0605350 | Msa1246830 | 0.810123 | 1.347966e-50 | -8.615850e-47 |
| Msa0605350 | Msa1255710 | 0.855663 | 5.422716e-62 | -8.615850e-47 |
| Msa0605350 | Msa1265570 | 0.837763 | 4.290918e-57 | -8.615850e-47 |
| Msa0605350 | Msa1278000 | 0.809366 | 1.960650e-50 | -8.615850e-47 |
| Msa0605350 | Msa1288070 | 0.813416 | 2.588298e-51 | -8.615850e-47 |
| Msa0605350 | Msa1288970 | -0.825905 | 3.632022e-54 | -8.615850e-47 |
| Msa0605350 | Msa1296860 | 0.822878 | 1.871399e-53 | -8.615850e-47 |
| Msa0605350 | Msa1328280 | 0.800641 | 1.310105e-48 | -8.615850e-47 |
| Msa0605350 | Msa1334670 | 0.839174 | 1.854812e-57 | -8.615850e-47 |
| Msa0605350 | Msa1352580 | 0.827297 | 1.690870e-54 | -8.615850e-47 |
| Msa0605350 | Msa1362590 | 0.825198 | 5.341160e-54 | -8.615850e-47 |
| Msa0605350 | Msa1365230 | 0.840107 | 1.061164e-57 | -8.615850e-47 |
| Msa0605350 | Msa1370270 | -0.808360 | 3.218204e-50 | -8.615850e-47 |
| Msa0605350 | Msa1371800 | 0.823433 | 1.388490e-53 | -8.615850e-47 |
| Msa0605350 | Msa1372030 | 0.829885 | 4.006133e-55 | -8.615850e-47 |
| Msa0605350 | Msa1376310 | 0.818172 | 2.251610e-52 | -8.615850e-47 |
| Msa0605350 | Msa1378400 | 0.806933 | 6.466793e-50 | -8.615850e-47 |
| Msa0605350 | Msa1379940 | 0.818818 | 1.607255e-52 | -8.615850e-47 |
| Msa0605350 | Msa1389820 | 0.800907 | 1.156445e-48 | -8.615850e-47 |
| Msa0605350 | Msa1398490 | 0.809772 | 1.604065e-50 | -8.615850e-47 |
| Msa0605350 | Msa1405830 | 0.803198 | 3.908431e-49 | -8.615850e-47 |
| Msa0605350 | Msa1413020 | 0.804505 | 2.092260e-49 | -8.615850e-47 |
| Msa0605350 | Msa1417950 | 0.814943 | 1.190882e-51 | -8.615850e-47 |
| Msa0605350 | Msa1420830 | 0.813886 | 2.039734e-51 | -8.615850e-47 |
| Msa0605350 | Msa1427600 | -0.801297 | 9.624281e-49 | -8.615850e-47 |
| Msa0605350 | Msa1429810 | 0.815042 | 1.131968e-51 | -8.615850e-47 |
| Msa0605350 | Msa1434700 | 0.816559 | 5.196687e-52 | -8.615850e-47 |
| Msa0605350 | Msa1438510 | 0.861902 | 7.398588e-64 | -8.615850e-47 |
| Msa0605350 | Msa1447900 | 0.834264 | 3.315054e-56 | -8.615850e-47 |
| Msa0605350 | Msa1462780 | 0.832369 | 9.833802e-56 | -8.615850e-47 |
| Msa0121470 | Msa0605350 | 0.827887 | 1.220717e-54 | -8.615850e-47 |
| Msa0121490 | Msa0605350 | 0.830119 | 3.513193e-55 | -8.615850e-47 |
| Msa0128340 | Msa0605350 | 0.814625 | 1.400958e-51 | -8.615850e-47 |
| Msa0128740 | Msa0605350 | 0.812396 | 4.329615e-51 | -8.615850e-47 |
| Msa0137970 | Msa0605350 | 0.802598 | 5.200802e-49 | -8.615850e-47 |
| Msa0147680 | Msa0605350 | 0.860549 | 1.911066e-63 | -8.615850e-47 |
| Msa0164170 | Msa0605350 | 0.816105 | 6.562934e-52 | -8.615850e-47 |
| Msa0168380 | Msa0605350 | 0.817290 | 3.559609e-52 | -8.615850e-47 |
| Msa0183920 | Msa0605350 | 0.807506 | 4.890403e-50 | -8.615850e-47 |
| Msa0185690 | Msa0605350 | 0.818684 | 1.724120e-52 | -8.615850e-47 |
| Msa0192830 | Msa0605350 | 0.810272 | 1.251845e-50 | -8.615850e-47 |
| Msa0206370 | Msa0605350 | 0.841293 | 5.186895e-58 | -8.615850e-47 |
| Msa0219840 | Msa0605350 | 0.809521 | 1.816180e-50 | -8.615850e-47 |
| Msa0221460 | Msa0605350 | -0.834424 | 3.021698e-56 | -8.615850e-47 |
| Msa0235080 | Msa0605350 | 0.821518 | 3.868638e-53 | -8.615850e-47 |
| Msa0372100 | Msa0605350 | 0.822785 | 1.967304e-53 | -8.615850e-47 |
| Msa0416210 | Msa0605350 | 0.807066 | 6.061239e-50 | -8.615850e-47 |
| Msa0244310 | Msa0605350 | 0.811173 | 7.992051e-51 | -8.615850e-47 |
| Msa0244820 | Msa0605350 | -0.838524 | 2.731708e-57 | -8.615850e-47 |
| Msa0260980 | Msa0605350 | 0.835505 | 1.613927e-56 | -8.615850e-47 |
| Msa0272990 | Msa0605350 | -0.800804 | 1.213818e-48 | -8.615850e-47 |
| Msa0273360 | Msa0605350 | 0.817325 | 3.496170e-52 | -8.615850e-47 |
| Msa0300670 | Msa0605350 | -0.839653 | 1.392957e-57 | -8.615850e-47 |
| Msa0316000 | Msa0605350 | 0.800050 | 1.728782e-48 | -8.615850e-47 |
| Msa0336430 | Msa0605350 | 0.867135 | 1.710532e-65 | -8.615850e-47 |
| Msa0336460 | Msa0605350 | 0.842333 | 2.756262e-58 | -8.615850e-47 |
| Msa0336520 | Msa0605350 | 0.861498 | 9.836619e-64 | -8.615850e-47 |
| Msa0337760 | Msa0605350 | -0.836923 | 7.041355e-57 | -8.615850e-47 |
| Msa0521510 | Msa0605350 | 0.801944 | 7.089119e-49 | -8.615850e-47 |
| Msa0526150 | Msa0605350 | 0.803279 | 3.761041e-49 | -8.615850e-47 |
| Msa0530660 | Msa0605350 | 0.830708 | 2.521673e-55 | -8.615850e-47 |
| Msa0541880 | Msa0605350 | 0.843114 | 1.709689e-58 | -8.615850e-47 |
| Msa0541940 | Msa0605350 | 0.833663 | 4.685468e-56 | -8.615850e-47 |
| Msa0549870 | Msa0605350 | 0.965482 | 1.158782e-124 | -8.615850e-47 |
| Msa0566460 | Msa0605350 | 0.813209 | 2.873369e-51 | -8.615850e-47 |
| Msa0568460 | Msa0605350 | -0.802048 | 6.748400e-49 | -8.615850e-47 |
| Msa0572360 | Msa0605350 | 0.803684 | 3.099515e-49 | -8.615850e-47 |
| Msa0574660 | Msa0605350 | 0.802410 | 5.685723e-49 | -8.615850e-47 |
| Msa0575950 | Msa0605350 | 0.812836 | 3.469584e-51 | -8.615850e-47 |
| Msa0576330 | Msa0605350 | 0.857914 | 1.179278e-62 | -8.615850e-47 |
| Msa0584970 | Msa0605350 | 0.843681 | 1.206606e-58 | -8.615850e-47 |
| Msa0587180 | Msa0605350 | 0.846909 | 1.614792e-59 | -8.615850e-47 |
| Msa0591890 | Msa0605350 | 0.800545 | 1.370897e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605350 | MtrunA17_Chr4g0034581 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.86e-68 | 200 |
| Msa0605350 | MtrunA17_Chr4g0034531 | 73.077 | 104 | 28 | 0 | 1 | 104 | 1 | 104 | 1.13e-52 | 160 |
| Msa0605350 | MtrunA17_Chr4g0034561 | 55.238 | 105 | 45 | 2 | 1 | 104 | 1 | 104 | 2.01e-37 | 122 |
| Msa0605350 | MtrunA17_Chr4g0034571 | 42.857 | 105 | 52 | 2 | 1 | 105 | 1 | 97 | 2.66e-21 | 84.0 |
| Msa0605350 | MtrunA17_Chr7g0234401 | 41.748 | 103 | 57 | 1 | 2 | 104 | 5 | 104 | 8.68e-21 | 79.7 |
| Msa0605350 | MtrunA17_Chr5g0445131 | 33.654 | 104 | 60 | 4 | 2 | 104 | 7 | 102 | 1.83e-11 | 55.8 |
| Msa0605350 | MtrunA17_Chr3g0100281 | 36.667 | 90 | 49 | 3 | 7 | 96 | 14 | 95 | 4.49e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0605350 | AT5G48490.1 | 36.634 | 101 | 60 | 2 | 5 | 104 | 4 | 101 | 4.02e-14 | 63.2 |
| Msa0605350 | AT5G48485.1 | 41.558 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 6.02e-14 | 62.8 |
Find 32 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGGTTGCTTTCTTTCTA+TGG | 0.215569 | 4_2:+51165867 | Msa0605350:CDS |
| CTATGTCGTTATAAGGATTC+AGG | 0.249484 | 4_2:+51165849 | Msa0605350:CDS |
| TCCTGTTAACTGTAAGCTTA+TGG | 0.254280 | 4_2:+51165917 | Msa0605350:CDS |
| TCAATGCCTATGTCGTTATA+AGG | 0.293667 | 4_2:+51165842 | Msa0605350:CDS |
| AATACCATGATGTTGGTTAA+TGG | 0.374528 | 4_2:+51165693 | Msa0605350:CDS |
| AGTGGTGACAATTCTGTTAA+TGG | 0.378651 | 4_2:+51165771 | Msa0605350:CDS |
| TCCATAAGCTTACAGTTAAC+AGG | 0.382556 | 4_2:-51165918 | None:intergenic |
| GGAAGTTCCATGGCTTGGTT+AGG | 0.427875 | 4_2:-51165897 | None:intergenic |
| TAGGCATTGAAGATCGGCTT+TGG | 0.464541 | 4_2:-51165829 | None:intergenic |
| ATTAACCAACATCATGGTAT+TGG | 0.470830 | 4_2:-51165691 | None:intergenic |
| TAACAGGAAGTTCCATGGCT+TGG | 0.486774 | 4_2:-51165902 | None:intergenic |
| TATGATTGTGGCGATGTTGT+TGG | 0.507427 | 4_2:+51165662 | Msa0605350:CDS |
| TATGTCGTTATAAGGATTCA+GGG | 0.530226 | 4_2:+51165850 | Msa0605350:CDS |
| CTGAATCCTTATAACGACAT+AGG | 0.550946 | 4_2:-51165848 | None:intergenic |
| AGAGATGGAGGCATACAAGC+AGG | 0.551353 | 4_2:+51165638 | None:intergenic |
| AACAAGGACTGAAGGCATGC+GGG | 0.556452 | 4_2:+51165739 | Msa0605350:CDS |
| GCCGTCTGATGCTTGCTGCT+CGG | 0.561297 | 4_2:+51165800 | Msa0605350:CDS |
| ACAGTTAACAGGAAGTTCCA+TGG | 0.568806 | 4_2:-51165907 | None:intergenic |
| CTGACCATTAACCAACATCA+TGG | 0.570185 | 4_2:-51165697 | None:intergenic |
| GCCGAGCAGCAAGCATCAGA+CGG | 0.582886 | 4_2:-51165801 | None:intergenic |
| ACGACATAGGCATTGAAGAT+CGG | 0.583458 | 4_2:-51165835 | None:intergenic |
| GAATTGTCACCACTCACATA+CGG | 0.587779 | 4_2:-51165762 | None:intergenic |
| CATGACAAAACAAGGACTGA+AGG | 0.588836 | 4_2:+51165731 | Msa0605350:CDS |
| ATACAAGCAGGTTATGATTG+TGG | 0.602790 | 4_2:+51165650 | Msa0605350:CDS |
| CAACATCATGGTATTGGCAA+TGG | 0.605291 | 4_2:-51165685 | None:intergenic |
| CATTGCCAATACCATGATGT+TGG | 0.609484 | 4_2:+51165686 | Msa0605350:CDS |
| TTATGTCACATGACAAAACA+AGG | 0.627195 | 4_2:+51165723 | Msa0605350:CDS |
| AAACAAGGACTGAAGGCATG+CGG | 0.631589 | 4_2:+51165738 | Msa0605350:CDS |
| TATTGATCCTAACCAAGCCA+TGG | 0.632800 | 4_2:+51165890 | Msa0605350:CDS |
| AACCACATGACTAGTAGCAG+TGG | 0.639755 | 4_2:-51165947 | None:intergenic |
| GCATGCGGGCCGTATGTGAG+TGG | 0.668512 | 4_2:+51165753 | Msa0605350:CDS |
| ACATGACTAGTAGCAGTGGA+AGG | 0.673463 | 4_2:-51165943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATTAACCAACATCATGGTAT+TGG | - | chr4_2:51165694-51165713 | None:intergenic | 30.0% | |
| ! | AATACCATGATGTTGGTTAA+TGG | + | chr4_2:51165693-51165712 | Msa0605350:CDS | 30.0% |
| TTATGTCACATGACAAAACA+AGG | + | chr4_2:51165723-51165742 | Msa0605350:CDS | 30.0% | |
| TATGTCGTTATAAGGATTCA+GGG | + | chr4_2:51165850-51165869 | Msa0605350:CDS | 30.0% | |
| ATACAAGCAGGTTATGATTG+TGG | + | chr4_2:51165650-51165669 | Msa0605350:CDS | 35.0% | |
| AGTGGTGACAATTCTGTTAA+TGG | + | chr4_2:51165771-51165790 | Msa0605350:CDS | 35.0% | |
| TCAATGCCTATGTCGTTATA+AGG | + | chr4_2:51165842-51165861 | Msa0605350:CDS | 35.0% | |
| CTGAATCCTTATAACGACAT+AGG | - | chr4_2:51165851-51165870 | None:intergenic | 35.0% | |
| CTATGTCGTTATAAGGATTC+AGG | + | chr4_2:51165849-51165868 | Msa0605350:CDS | 35.0% | |
| TCCTGTTAACTGTAAGCTTA+TGG | + | chr4_2:51165917-51165936 | Msa0605350:CDS | 35.0% | |
| TCCATAAGCTTACAGTTAAC+AGG | - | chr4_2:51165921-51165940 | None:intergenic | 35.0% | |
| TATGATTGTGGCGATGTTGT+TGG | + | chr4_2:51165662-51165681 | Msa0605350:CDS | 40.0% | |
| !! | CAACATCATGGTATTGGCAA+TGG | - | chr4_2:51165688-51165707 | None:intergenic | 40.0% |
| CATTGCCAATACCATGATGT+TGG | + | chr4_2:51165686-51165705 | Msa0605350:CDS | 40.0% | |
| CTGACCATTAACCAACATCA+TGG | - | chr4_2:51165700-51165719 | None:intergenic | 40.0% | |
| CATGACAAAACAAGGACTGA+AGG | + | chr4_2:51165731-51165750 | Msa0605350:CDS | 40.0% | |
| GAATTGTCACCACTCACATA+CGG | - | chr4_2:51165765-51165784 | None:intergenic | 40.0% | |
| !! | ACGACATAGGCATTGAAGAT+CGG | - | chr4_2:51165838-51165857 | None:intergenic | 40.0% |
| ! | TCAGGGTTGCTTTCTTTCTA+TGG | + | chr4_2:51165867-51165886 | Msa0605350:CDS | 40.0% |
| TATTGATCCTAACCAAGCCA+TGG | + | chr4_2:51165890-51165909 | Msa0605350:CDS | 40.0% | |
| ACAGTTAACAGGAAGTTCCA+TGG | - | chr4_2:51165910-51165929 | None:intergenic | 40.0% | |
| ! | AAACAAGGACTGAAGGCATG+CGG | + | chr4_2:51165738-51165757 | Msa0605350:CDS | 45.0% |
| !! | TAGGCATTGAAGATCGGCTT+TGG | - | chr4_2:51165832-51165851 | None:intergenic | 45.0% |
| TAACAGGAAGTTCCATGGCT+TGG | - | chr4_2:51165905-51165924 | None:intergenic | 45.0% | |
| ! | AACAAGGACTGAAGGCATGC+GGG | + | chr4_2:51165739-51165758 | Msa0605350:CDS | 50.0% |
| !! | GGAAGTTCCATGGCTTGGTT+AGG | - | chr4_2:51165900-51165919 | None:intergenic | 50.0% |
| ! | GCCGTCTGATGCTTGCTGCT+CGG | + | chr4_2:51165800-51165819 | Msa0605350:CDS | 60.0% |
| GCCGAGCAGCAAGCATCAGA+CGG | - | chr4_2:51165804-51165823 | None:intergenic | 60.0% | |
| GCATGCGGGCCGTATGTGAG+TGG | + | chr4_2:51165753-51165772 | Msa0605350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 51165642 | 51165959 | 51165642 | ID=Msa0605350;Name=Msa0605350 |
| chr4_2 | mRNA | 51165642 | 51165959 | 51165642 | ID=Msa0605350-mRNA-1;Parent=Msa0605350;Name=Msa0605350-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|105 |
| chr4_2 | exon | 51165642 | 51165959 | 51165642 | ID=Msa0605350-mRNA-1:exon:12213;Parent=Msa0605350-mRNA-1 |
| chr4_2 | CDS | 51165642 | 51165959 | 51165642 | ID=Msa0605350-mRNA-1:cds;Parent=Msa0605350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
