Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680450 | XP_003606114.1 | 90.153 | 589 | 44 | 1 | 1 | 575 | 1 | 589 | 0.0 | 1012 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680450 | sp|F4HW17|TMN5_ARATH | 51.370 | 584 | 263 | 5 | 8 | 575 | 11 | 589 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680450 | G7JIE2 | 90.153 | 589 | 44 | 1 | 1 | 575 | 1 | 589 | 0.0 | 1012 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa0680450 | -0.816947 | 4.253233e-52 | -8.615850e-47 |
| Msa0011100 | Msa0680450 | -0.817212 | 3.707083e-52 | -8.615850e-47 |
| Msa0016380 | Msa0680450 | -0.802981 | 4.334963e-49 | -8.615850e-47 |
| Msa0017710 | Msa0680450 | 0.819836 | 9.423383e-53 | -8.615850e-47 |
| Msa0045620 | Msa0680450 | 0.814121 | 1.809922e-51 | -8.615850e-47 |
| Msa0048410 | Msa0680450 | -0.808184 | 3.508780e-50 | -8.615850e-47 |
| Msa0089470 | Msa0680450 | -0.810516 | 1.108823e-50 | -8.615850e-47 |
| Msa0089540 | Msa0680450 | 0.825855 | 3.733381e-54 | -8.615850e-47 |
| Msa0091220 | Msa0680450 | -0.800772 | 1.232296e-48 | -8.615850e-47 |
| Msa0094900 | Msa0680450 | -0.806109 | 9.650254e-50 | -8.615850e-47 |
| Msa0108500 | Msa0680450 | -0.803198 | 3.909183e-49 | -8.615850e-47 |
| Msa0120320 | Msa0680450 | -0.800802 | 1.214913e-48 | -8.615850e-47 |
| Msa0608940 | Msa0680450 | -0.823297 | 1.494326e-53 | -8.615850e-47 |
| Msa0612880 | Msa0680450 | -0.809947 | 1.471010e-50 | -8.615850e-47 |
| Msa0623310 | Msa0680450 | 0.819664 | 1.031293e-52 | -8.615850e-47 |
| Msa0659020 | Msa0680450 | -0.841931 | 3.523001e-58 | -8.615850e-47 |
| Msa0661480 | Msa0680450 | 0.804332 | 2.272837e-49 | -8.615850e-47 |
| Msa0673940 | Msa0680450 | 0.823983 | 1.032541e-53 | -8.615850e-47 |
| Msa0680370 | Msa0680450 | 0.982384 | 5.929313e-155 | -8.615850e-47 |
| Msa0680450 | Msa0685390 | -0.807583 | 4.709602e-50 | -8.615850e-47 |
| Msa0680450 | Msa0691740 | -0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0680450 | Msa0704690 | 0.812094 | 5.039486e-51 | -8.615850e-47 |
| Msa0680450 | Msa0704780 | -0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0680450 | Msa0732970 | 0.820613 | 6.252940e-53 | -8.615850e-47 |
| Msa0680450 | Msa0733240 | -0.823139 | 1.626295e-53 | -8.615850e-47 |
| Msa0680450 | Msa0756440 | -0.806557 | 7.762002e-50 | -8.615850e-47 |
| Msa0680450 | Msa0761830 | 0.809376 | 1.950974e-50 | -8.615850e-47 |
| Msa0680450 | Msa0773960 | 0.814579 | 1.433865e-51 | -8.615850e-47 |
| Msa0680450 | Msa0774360 | -0.814872 | 1.234529e-51 | -8.615850e-47 |
| Msa0680450 | Msa0812020 | -0.829054 | 6.379699e-55 | -8.615850e-47 |
| Msa0680450 | Msa0834200 | -0.804287 | 2.322801e-49 | -8.615850e-47 |
| Msa0680450 | Msa0842180 | 0.826222 | 3.054000e-54 | -8.615850e-47 |
| Msa0680450 | Msa0848780 | -0.802560 | 5.295490e-49 | -8.615850e-47 |
| Msa0680450 | Msa0852090 | -0.820851 | 5.512791e-53 | -8.615850e-47 |
| Msa0680450 | Msa0870020 | 0.805988 | 1.022934e-49 | -8.615850e-47 |
| Msa0680450 | Msa0871420 | 0.820220 | 7.696306e-53 | -8.615850e-47 |
| Msa0680450 | Msa0906100 | -0.812413 | 4.292230e-51 | -8.615850e-47 |
| Msa0680450 | Msa0936630 | 0.813170 | 2.930419e-51 | -8.615850e-47 |
| Msa0680450 | Msa0938150 | -0.812587 | 3.932670e-51 | -8.615850e-47 |
| Msa0680450 | Msa0941150 | -0.801709 | 7.923947e-49 | -8.615850e-47 |
| Msa0680450 | Msa0967900 | -0.811027 | 8.596589e-51 | -8.615850e-47 |
| Msa0680450 | Msa1026710 | 0.848859 | 4.685566e-60 | -8.615850e-47 |
| Msa0680450 | Msa1031530 | -0.809512 | 1.824020e-50 | -8.615850e-47 |
| Msa0680450 | Msa1070630 | -0.815984 | 6.984620e-52 | -8.615850e-47 |
| Msa0680450 | Msa1078590 | -0.803292 | 3.737902e-49 | -8.615850e-47 |
| Msa0680450 | Msa1088740 | -0.807877 | 4.077226e-50 | -8.615850e-47 |
| Msa0680450 | Msa1093190 | -0.820297 | 7.390465e-53 | -8.615850e-47 |
| Msa0680450 | Msa1129660 | -0.835114 | 2.025330e-56 | -8.615850e-47 |
| Msa0680450 | Msa1130770 | 0.831184 | 1.927216e-55 | -8.615850e-47 |
| Msa0680450 | Msa1158450 | -0.811452 | 6.953807e-51 | -8.615850e-47 |
| Msa0680450 | Msa1186670 | 0.806756 | 7.046235e-50 | -8.615850e-47 |
| Msa0680450 | Msa1190350 | -0.812428 | 4.261285e-51 | -8.615850e-47 |
| Msa0680450 | Msa1217890 | 0.802982 | 4.331167e-49 | -8.615850e-47 |
| Msa0680450 | Msa1220580 | 0.817048 | 4.036794e-52 | -8.615850e-47 |
| Msa0680450 | Msa1220720 | 0.801241 | 9.880069e-49 | -8.615850e-47 |
| Msa0680450 | Msa1240240 | -0.804027 | 2.630289e-49 | -8.615850e-47 |
| Msa0680450 | Msa1266120 | -0.822571 | 2.205491e-53 | -8.615850e-47 |
| Msa0680450 | Msa1286860 | -0.815692 | 8.114221e-52 | -8.615850e-47 |
| Msa0680450 | Msa1295210 | -0.802086 | 6.628557e-49 | -8.615850e-47 |
| Msa0680450 | Msa1320660 | -0.816959 | 4.225123e-52 | -8.615850e-47 |
| Msa0680450 | Msa1321490 | 0.804117 | 2.520019e-49 | -8.615850e-47 |
| Msa0680450 | Msa1323260 | -0.810593 | 1.067245e-50 | -8.615850e-47 |
| Msa0680450 | Msa1334560 | 0.825478 | 4.585579e-54 | -8.615850e-47 |
| Msa0680450 | Msa1347610 | 0.833252 | 5.934906e-56 | -8.615850e-47 |
| Msa0680450 | Msa1352630 | -0.812900 | 3.358984e-51 | -8.615850e-47 |
| Msa0680450 | Msa1362590 | 0.813056 | 3.104394e-51 | -8.615850e-47 |
| Msa0680450 | Msa1371800 | 0.808927 | 2.435406e-50 | -8.615850e-47 |
| Msa0680450 | Msa1372030 | 0.800099 | 1.689237e-48 | -8.615850e-47 |
| Msa0680450 | Msa1376310 | 0.810777 | 9.736833e-51 | -8.615850e-47 |
| Msa0680450 | Msa1379940 | 0.823008 | 1.745539e-53 | -8.615850e-47 |
| Msa0680450 | Msa1392570 | -0.812979 | 3.227150e-51 | -8.615850e-47 |
| Msa0680450 | Msa1401000 | -0.829334 | 5.457328e-55 | -8.615850e-47 |
| Msa0680450 | Msa1421630 | 0.820966 | 5.187993e-53 | -8.615850e-47 |
| Msa0680450 | Msa1437780 | 0.800764 | 1.236680e-48 | -8.615850e-47 |
| Msa0680450 | Msa1447900 | 0.823801 | 1.138818e-53 | -8.615850e-47 |
| Msa0680450 | Msa1450630 | -0.811848 | 5.700287e-51 | -8.615850e-47 |
| Msa0121320 | Msa0680450 | 0.805101 | 1.570235e-49 | -8.615850e-47 |
| Msa0137010 | Msa0680450 | -0.808898 | 2.470392e-50 | -8.615850e-47 |
| Msa0140870 | Msa0680450 | -0.802838 | 4.638632e-49 | -8.615850e-47 |
| Msa0147680 | Msa0680450 | 0.800313 | 1.528477e-48 | -8.615850e-47 |
| Msa0166180 | Msa0680450 | 0.812282 | 4.586089e-51 | -8.615850e-47 |
| Msa0178440 | Msa0680450 | -0.810409 | 1.169442e-50 | -8.615850e-47 |
| Msa0194750 | Msa0680450 | -0.802429 | 5.634127e-49 | -8.615850e-47 |
| Msa0196260 | Msa0680450 | 0.812484 | 4.142620e-51 | -8.615850e-47 |
| Msa0211460 | Msa0680450 | 0.828865 | 7.088509e-55 | -8.615850e-47 |
| Msa0225070 | Msa0680450 | -0.807414 | 5.114397e-50 | -8.615850e-47 |
| Msa0235080 | Msa0680450 | 0.803478 | 3.420514e-49 | -8.615850e-47 |
| Msa0236690 | Msa0680450 | -0.804463 | 2.134384e-49 | -8.615850e-47 |
| Msa0237180 | Msa0680450 | 0.809801 | 1.581448e-50 | -8.615850e-47 |
| Msa0367590 | Msa0680450 | -0.803520 | 3.351827e-49 | -8.615850e-47 |
| Msa0370350 | Msa0680450 | -0.813809 | 2.120460e-51 | -8.615850e-47 |
| Msa0380590 | Msa0680450 | 0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0416210 | Msa0680450 | 0.807116 | 5.914010e-50 | -8.615850e-47 |
| Msa0417850 | Msa0680450 | -0.810017 | 1.420470e-50 | -8.615850e-47 |
| Msa0419420 | Msa0680450 | -0.804363 | 2.239766e-49 | -8.615850e-47 |
| Msa0430040 | Msa0680450 | -0.809391 | 1.936368e-50 | -8.615850e-47 |
| Msa0436100 | Msa0680450 | 0.820637 | 6.174300e-53 | -8.615850e-47 |
| Msa0240590 | Msa0680450 | -0.807120 | 5.904410e-50 | -8.615850e-47 |
| Msa0267450 | Msa0680450 | -0.824111 | 9.636451e-54 | -8.615850e-47 |
| Msa0267510 | Msa0680450 | -0.820270 | 7.493456e-53 | -8.615850e-47 |
| Msa0276800 | Msa0680450 | -0.818139 | 2.290215e-52 | -8.615850e-47 |
| Msa0290800 | Msa0680450 | 0.801850 | 7.412198e-49 | -8.615850e-47 |
| Msa0302310 | Msa0680450 | -0.809701 | 1.661304e-50 | -8.615850e-47 |
| Msa0307430 | Msa0680450 | 0.819981 | 8.729976e-53 | -8.615850e-47 |
| Msa0315660 | Msa0680450 | 0.809690 | 1.670650e-50 | -8.615850e-47 |
| Msa0316720 | Msa0680450 | -0.815741 | 7.912453e-52 | -8.615850e-47 |
| Msa0328870 | Msa0680450 | 0.814172 | 1.763739e-51 | -8.615850e-47 |
| Msa0336520 | Msa0680450 | 0.808288 | 3.333692e-50 | -8.615850e-47 |
| Msa0483090 | Msa0680450 | -0.809076 | 2.261955e-50 | -8.615850e-47 |
| Msa0500420 | Msa0680450 | 0.800219 | 1.597292e-48 | -8.615850e-47 |
| Msa0506750 | Msa0680450 | 0.807662 | 4.530392e-50 | -8.615850e-47 |
| Msa0526150 | Msa0680450 | 0.822539 | 2.243870e-53 | -8.615850e-47 |
| Msa0538050 | Msa0680450 | -0.801265 | 9.768050e-49 | -8.615850e-47 |
| Msa0567570 | Msa0680450 | 0.807589 | 4.695127e-50 | -8.615850e-47 |
| Msa0568290 | Msa0680450 | -0.803259 | 3.796713e-49 | -8.615850e-47 |
| Msa0568460 | Msa0680450 | -0.833596 | 4.871510e-56 | -8.615850e-47 |
| Msa0572360 | Msa0680450 | 0.825536 | 4.442432e-54 | -8.615850e-47 |
| Msa0576320 | Msa0680450 | 0.815239 | 1.023646e-51 | -8.615850e-47 |
| Msa0587180 | Msa0680450 | 0.815433 | 9.266331e-52 | -8.615850e-47 |
| Msa0601380 | Msa0680450 | 0.861268 | 1.155733e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680450 | MtrunA17_Chr4g0026371 | 90.153 | 589 | 44 | 1 | 1 | 575 | 1 | 589 | 0.0 | 1012 |
| Msa0680450 | MtrunA17_Chr8g0375501 | 46.271 | 590 | 292 | 5 | 7 | 575 | 6 | 591 | 0.0 | 561 |
| Msa0680450 | MtrunA17_Chr5g0434001 | 46.758 | 586 | 292 | 4 | 8 | 575 | 24 | 607 | 0.0 | 558 |
| Msa0680450 | MtrunA17_Chr6g0480551 | 45.194 | 593 | 302 | 5 | 1 | 575 | 1 | 588 | 0.0 | 540 |
| Msa0680450 | MtrunA17_Chr2g0277491 | 33.448 | 580 | 352 | 8 | 20 | 575 | 14 | 583 | 1.66e-97 | 308 |
| Msa0680450 | MtrunA17_Chr8g0380651 | 32.933 | 583 | 345 | 12 | 24 | 575 | 22 | 589 | 3.95e-95 | 302 |
| Msa0680450 | MtrunA17_Chr8g0342031 | 29.276 | 608 | 359 | 10 | 31 | 573 | 45 | 646 | 3.12e-93 | 299 |
| Msa0680450 | MtrunA17_Chr1g0150181 | 29.819 | 607 | 357 | 10 | 31 | 573 | 34 | 635 | 1.02e-90 | 292 |
| Msa0680450 | MtrunA17_Chr3g0136881 | 30.570 | 579 | 346 | 9 | 46 | 573 | 61 | 634 | 6.85e-89 | 287 |
| Msa0680450 | MtrunA17_Chr4g0065301 | 28.145 | 636 | 357 | 15 | 29 | 575 | 32 | 656 | 9.33e-74 | 248 |
| Msa0680450 | MtrunA17_Chr5g0448371 | 26.452 | 620 | 371 | 15 | 28 | 573 | 55 | 663 | 4.52e-57 | 202 |
| Msa0680450 | MtrunA17_Chr3g0120461 | 26.214 | 618 | 375 | 14 | 28 | 573 | 49 | 657 | 2.26e-55 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680450 | AT1G08350.3 | 51.370 | 584 | 263 | 5 | 8 | 575 | 11 | 589 | 0.0 | 609 |
| Msa0680450 | AT1G08350.2 | 51.370 | 584 | 263 | 5 | 8 | 575 | 11 | 589 | 0.0 | 609 |
| Msa0680450 | AT1G08350.1 | 51.874 | 507 | 242 | 2 | 71 | 575 | 2 | 508 | 0.0 | 555 |
| Msa0680450 | AT2G01970.1 | 45.363 | 593 | 305 | 4 | 1 | 575 | 1 | 592 | 0.0 | 550 |
| Msa0680450 | AT1G14670.1 | 46.848 | 587 | 291 | 5 | 9 | 575 | 7 | 592 | 0.0 | 548 |
| Msa0680450 | AT5G37310.1 | 47.009 | 585 | 290 | 5 | 10 | 575 | 10 | 593 | 0.0 | 546 |
| Msa0680450 | AT5G37310.2 | 47.009 | 585 | 290 | 5 | 10 | 575 | 10 | 593 | 0.0 | 546 |
| Msa0680450 | AT1G08350.4 | 49.515 | 515 | 239 | 5 | 8 | 506 | 11 | 520 | 2.99e-176 | 509 |
| Msa0680450 | AT1G10950.1 | 32.465 | 576 | 355 | 8 | 24 | 575 | 24 | 589 | 6.15e-97 | 307 |
| Msa0680450 | AT3G13772.1 | 31.065 | 573 | 327 | 9 | 58 | 573 | 78 | 639 | 1.69e-95 | 305 |
| Msa0680450 | AT2G24170.1 | 30.000 | 640 | 376 | 11 | 1 | 573 | 1 | 635 | 2.04e-93 | 300 |
| Msa0680450 | AT1G55130.1 | 29.319 | 573 | 337 | 9 | 58 | 573 | 74 | 635 | 9.28e-89 | 287 |
| Msa0680450 | AT5G25100.2 | 30.016 | 613 | 347 | 9 | 33 | 573 | 47 | 649 | 8.34e-85 | 277 |
| Msa0680450 | AT5G25100.1 | 30.494 | 587 | 339 | 8 | 46 | 573 | 66 | 642 | 1.12e-84 | 277 |
| Msa0680450 | AT5G10840.1 | 30.664 | 587 | 336 | 8 | 46 | 573 | 72 | 646 | 6.92e-84 | 275 |
| Msa0680450 | AT5G35160.2 | 26.626 | 661 | 381 | 16 | 8 | 575 | 9 | 658 | 5.50e-63 | 219 |
| Msa0680450 | AT5G35160.3 | 26.626 | 661 | 381 | 16 | 8 | 575 | 9 | 658 | 5.50e-63 | 219 |
| Msa0680450 | AT5G35160.4 | 26.626 | 661 | 381 | 16 | 8 | 575 | 9 | 658 | 5.50e-63 | 219 |
| Msa0680450 | AT5G35160.1 | 26.584 | 647 | 371 | 16 | 8 | 575 | 9 | 630 | 3.47e-61 | 214 |
| Msa0680450 | AT4G12650.1 | 27.172 | 633 | 362 | 15 | 29 | 573 | 29 | 650 | 3.90e-58 | 206 |
| Msa0680450 | AT2G24170.2 | 27.229 | 415 | 235 | 8 | 31 | 382 | 34 | 444 | 4.51e-47 | 171 |
Find 168 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGATGATCTTCCATTT+TGG | 0.104752 | 4_4:-39457905 | Msa0680450:CDS |
| AGCAAGTTAAACGATAATTT+TGG | 0.129845 | 4_4:-39453332 | Msa0680450:three_prime_UTR |
| TTACAACTATCCTTCTTTAT+TGG | 0.166873 | 4_4:-39453945 | Msa0680450:CDS |
| TCGGTTTAGGTCCAAGTTTC+AGG | 0.182537 | 4_4:-39455032 | Msa0680450:CDS |
| TATGCTTTCTTCCTGATATT+TGG | 0.187363 | 4_4:-39453903 | Msa0680450:CDS |
| ATCGTGATTATTAGTTTATT+TGG | 0.195282 | 4_4:-39455100 | Msa0680450:CDS |
| ACACCATTTCAAATGTTTAT+TGG | 0.207200 | 4_4:-39454950 | Msa0680450:CDS |
| ATACACTCTTCCTGGCATTT+TGG | 0.207826 | 4_4:-39454855 | Msa0680450:CDS |
| GACCACTCCAAAGTGTAATT+TGG | 0.216068 | 4_4:-39453466 | Msa0680450:three_prime_UTR |
| AATTCACTTATTCGGTTATC+TGG | 0.221535 | 4_4:-39457701 | Msa0680450:CDS |
| AAGCTTACAATTGATGAAAT+TGG | 0.229144 | 4_4:-39457972 | Msa0680450:CDS |
| TCCTAATTAGTTCTTGTTCT+AGG | 0.259683 | 4_4:+39458777 | None:intergenic |
| ACATTATTGCAATATCTTAC+AGG | 0.260840 | 4_4:-39455153 | Msa0680450:CDS |
| CCCATCCATTCTCAGCAAAT+TGG | 0.263581 | 4_4:+39455334 | None:intergenic |
| GATTGATGAACTCTTCTCTT+TGG | 0.264860 | 4_4:-39453769 | Msa0680450:three_prime_UTR |
| TAGCGTACACCTGGTGTAAT+TGG | 0.283426 | 4_4:+39454897 | None:intergenic |
| AACATCAATGCCAACATCTT+TGG | 0.283609 | 4_4:+39457725 | None:intergenic |
| AGAGGGTAGGTTGTTAGAAT+TGG | 0.300458 | 4_4:-39453580 | Msa0680450:three_prime_UTR |
| TGATGTTAAATTCACTTATT+CGG | 0.301127 | 4_4:-39457709 | Msa0680450:CDS |
| CAAGCTGAACATGTGTAAAA+AGG | 0.322583 | 4_4:+39457820 | None:intergenic |
| CACAGTTTGGAAGAGCTTTA+CGG | 0.324619 | 4_4:-39453623 | Msa0680450:three_prime_UTR |
| CGATCCCATTACTTGCATTC+GGG | 0.330440 | 4_4:-39455069 | Msa0680450:CDS |
| GAGTAATTGGATATCGGTTT+AGG | 0.339176 | 4_4:-39455045 | Msa0680450:CDS |
| AGAAAGGAGTGGAATTATAG+AGG | 0.344095 | 4_4:-39453598 | Msa0680450:three_prime_UTR |
| GTTTGTATGAGTTCAAATTC+AGG | 0.346786 | 4_4:-39458028 | Msa0680450:CDS |
| GTTATATCTACAGCGCGATT+TGG | 0.348460 | 4_4:+39457747 | None:intergenic |
| ACCTAGAACAAGAACTAATT+AGG | 0.351324 | 4_4:-39458778 | Msa0680450:five_prime_UTR |
| TCGATCCCATTACTTGCATT+CGG | 0.351439 | 4_4:-39455070 | Msa0680450:CDS |
| AACTGATGGCACCAAATATC+AGG | 0.360427 | 4_4:+39453892 | None:intergenic |
| GTTGAAGAAAACACAATCTA+TGG | 0.371936 | 4_4:-39458675 | Msa0680450:exon |
| CAAATCACATCTACAACGTT+GGG | 0.372759 | 4_4:-39458577 | Msa0680450:CDS |
| CTTCTGTTCCTAGCAATTAT+CGG | 0.376000 | 4_4:-39455459 | Msa0680450:CDS |
| GGAGTTTCATGACTTATAAC+AGG | 0.383738 | 4_4:-39458734 | Msa0680450:intron |
| GAGAAGAGTGTTAGTCTAGC+TGG | 0.385735 | 4_4:-39455220 | Msa0680450:CDS |
| ACCGTAACCAAACATGAAAA+TGG | 0.387429 | 4_4:+39454004 | None:intergenic |
| CATACCTCCACCACCATTCA+TGG | 0.389249 | 4_4:+39454753 | None:intergenic |
| CTAGCGCAAATGAAGAAGAT+AGG | 0.390988 | 4_4:-39457400 | Msa0680450:CDS |
| GGAAGCTGTTGAATCTCTTT+CGG | 0.396624 | 4_4:+39454986 | None:intergenic |
| TCTGGAATGCCACTGAATTA+CGG | 0.400032 | 4_4:-39457683 | Msa0680450:CDS |
| AAATCCATGGCTGCACAGTT+TGG | 0.401672 | 4_4:-39453636 | Msa0680450:three_prime_UTR |
| TACAAAATATACACTCTTCC+TGG | 0.403164 | 4_4:-39454863 | Msa0680450:CDS |
| GTTGTAGAAGTAAAAGCATT+TGG | 0.408783 | 4_4:-39457774 | Msa0680450:CDS |
| ACAGTTTGGAAGAGCTTTAC+GGG | 0.409540 | 4_4:-39453622 | Msa0680450:three_prime_UTR |
| GTCACAGCTGGACTCCCATT+GGG | 0.412663 | 4_4:-39455130 | Msa0680450:CDS |
| AGCTTGATGTTCTTTACAAT+GGG | 0.413660 | 4_4:-39457803 | Msa0680450:CDS |
| GTCCAAGTTTCAGGTCCCCT+TGG | 0.415276 | 4_4:-39455023 | Msa0680450:CDS |
| GAATGGTGAAGATGAGGAGA+AGG | 0.426866 | 4_4:+39458630 | None:intergenic |
| GAAGATGAAAGTTTGATTCA+TGG | 0.429871 | 4_4:-39457864 | Msa0680450:CDS |
| CATGGCCAATTTGCTGAGAA+TGG | 0.430352 | 4_4:-39455339 | Msa0680450:CDS |
| TCCAAGTTTCAGGTCCCCTT+GGG | 0.431667 | 4_4:-39455022 | Msa0680450:CDS |
| ACTCACATTTAACTAACATC+AGG | 0.435532 | 4_4:+39453395 | None:intergenic |
| CAGATGAAAGAGCGAATAGA+AGG | 0.436318 | 4_4:+39455391 | None:intergenic |
| TCAAATATCTCGTATAAAGC+AGG | 0.441728 | 4_4:+39457541 | None:intergenic |
| AAGAGATTCAACAGCTTCCT+TGG | 0.444008 | 4_4:-39454982 | Msa0680450:CDS |
| GGTTGTTAGAATTGGAGATC+AGG | 0.446325 | 4_4:-39453572 | Msa0680450:three_prime_UTR |
| ACCCAAGGGGACCTGAAACT+TGG | 0.452480 | 4_4:+39455021 | None:intergenic |
| TTTGATAACAGTTTATTCCT+TGG | 0.452715 | 4_4:-39453728 | Msa0680450:three_prime_UTR |
| TGGGATTCTTTACATTGGTC+CGG | 0.456365 | 4_4:-39455200 | Msa0680450:CDS |
| CAGCTTGATGTTCTTTACAA+TGG | 0.457083 | 4_4:-39457804 | Msa0680450:CDS |
| CCAGGTGTACGCTAGTTTGT+GGG | 0.458018 | 4_4:-39454888 | Msa0680450:CDS |
| AGCTTACAAGATTAGCAGTT+GGG | 0.461088 | 4_4:+39457292 | None:intergenic |
| CACCATGACTGTATGGATAG+AGG | 0.461983 | 4_4:+39455433 | None:intergenic |
| ACCAGGTGTACGCTAGTTTG+TGG | 0.462770 | 4_4:-39454889 | Msa0680450:CDS |
| TTGTGTATCGTAAAGTTCAT+TGG | 0.462873 | 4_4:-39457617 | Msa0680450:CDS |
| GGAGAAGGAGAATGAGGTGA+TGG | 0.465191 | 4_4:+39458645 | None:intergenic |
| ATTACGGTTTGAGAATAGAA+TGG | 0.466201 | 4_4:-39457667 | Msa0680450:CDS |
| TTCAACAGCTTCCTTGGTAC+AGG | 0.467031 | 4_4:-39454976 | Msa0680450:CDS |
| GAAGAGCTTTACGGGAAGAA+AGG | 0.469317 | 4_4:-39453614 | Msa0680450:three_prime_UTR |
| CCTCCAATAAACATTTGAAA+TGG | 0.469524 | 4_4:+39454947 | None:intergenic |
| GGTCACAGCTGGACTCCCAT+TGG | 0.470714 | 4_4:-39455131 | Msa0680450:CDS |
| GAGAAGGAGAATGAGGTGAT+GGG | 0.473388 | 4_4:+39458646 | None:intergenic |
| AGTAAGTTGAATAAACTTGA+TGG | 0.476846 | 4_4:-39458755 | Msa0680450:five_prime_UTR |
| GAATAGAAGGACAAGCCAAC+TGG | 0.478682 | 4_4:+39455404 | None:intergenic |
| GCCAATTTGCTGAGAATGGA+TGG | 0.479155 | 4_4:-39455335 | Msa0680450:CDS |
| CGGATATCTCTTTGTACCCA+AGG | 0.484114 | 4_4:+39455006 | None:intergenic |
| CCATTTCAAATGTTTATTGG+AGG | 0.484636 | 4_4:-39454947 | Msa0680450:CDS |
| AGCAAAACCAAATTACACTT+TGG | 0.485747 | 4_4:+39453459 | None:intergenic |
| AAGAAGATAGGGAGGTTGGT+TGG | 0.486649 | 4_4:-39457388 | Msa0680450:CDS |
| TGGATGAAAATTGCACCAAA+AGG | 0.486946 | 4_4:+39454917 | None:intergenic |
| AGTGAAAAGATAGAATCTCT+TGG | 0.489049 | 4_4:-39458083 | Msa0680450:CDS |
| TTTGTATGAGTTCAAATTCA+GGG | 0.499515 | 4_4:-39458027 | Msa0680450:CDS |
| TGATGAAATTGGTGTCTTGA+AGG | 0.499596 | 4_4:-39457961 | Msa0680450:CDS |
| GAGAGTCCACCATGACTGTA+TGG | 0.501120 | 4_4:+39455426 | None:intergenic |
| AGATGAGGAGAAGGAGAATG+AGG | 0.503185 | 4_4:+39458639 | None:intergenic |
| AATAAGGACGGGTGCGGAGG+AGG | 0.503888 | 4_4:+39457338 | None:intergenic |
| TCACGATAATAGAGCCCAAT+GGG | 0.504953 | 4_4:+39455116 | None:intergenic |
| TCAAATCACATCTACAACGT+TGG | 0.508263 | 4_4:-39458578 | Msa0680450:CDS |
| GAAAGGAGTGGAATTATAGA+GGG | 0.514988 | 4_4:-39453597 | Msa0680450:three_prime_UTR |
| AATGGTGATCGTTTGAGCAA+TGG | 0.518346 | 4_4:-39458050 | Msa0680450:CDS |
| TGTTGACCTGGGATTGTTGA+AGG | 0.519716 | 4_4:+39458520 | None:intergenic |
| ATTGTAGAATGGTGAAGATG+AGG | 0.521362 | 4_4:+39458624 | None:intergenic |
| CATTATTGCAATATCTTACA+GGG | 0.521402 | 4_4:-39455152 | Msa0680450:CDS |
| ATATCTTACAGGGTCACAGC+TGG | 0.526781 | 4_4:-39455142 | Msa0680450:CDS |
| GTCTTGAAGGAAGCTATAAA+CGG | 0.528744 | 4_4:-39457948 | Msa0680450:CDS |
| CTAGCTGGGATTCTTTACAT+TGG | 0.529641 | 4_4:-39455205 | Msa0680450:CDS |
| CGCACTGTAGCCAATAAAGA+AGG | 0.533327 | 4_4:+39453935 | None:intergenic |
| TGAAAGTTTGATTCATGGTG+GGG | 0.534546 | 4_4:-39457859 | Msa0680450:CDS |
| ATGAAAGTTTGATTCATGGT+GGG | 0.539192 | 4_4:-39457860 | Msa0680450:CDS |
| AGAAGAGTGTTAGTCTAGCT+GGG | 0.542187 | 4_4:-39455219 | Msa0680450:CDS |
| CTCAGCAAATTGGCCATGGA+AGG | 0.542407 | 4_4:+39455344 | None:intergenic |
| CTCACATTTAACTAACATCA+GGG | 0.545109 | 4_4:+39453396 | None:intergenic |
| TAGCGCAAATGAAGAAGATA+GGG | 0.545410 | 4_4:-39457399 | Msa0680450:CDS |
| CTGAATCAAGACTAAATCCA+TGG | 0.551624 | 4_4:-39453649 | Msa0680450:three_prime_UTR |
| AATGAAGAAGATAGGGAGGT+TGG | 0.554718 | 4_4:-39457392 | Msa0680450:CDS |
| AACGTTGTAGATGTGATTTG+AGG | 0.557372 | 4_4:+39458580 | None:intergenic |
| TCTTCCAAACTGTGCAGCCA+TGG | 0.557389 | 4_4:+39453632 | None:intergenic |
| ACCATGACTGTATGGATAGA+GGG | 0.558598 | 4_4:+39455434 | None:intergenic |
| CAATTTGCAATCAAACATGT+TGG | 0.559250 | 4_4:+39453513 | None:intergenic |
| CATTCTCAGCAAATTGGCCA+TGG | 0.562379 | 4_4:+39455340 | None:intergenic |
| AGAAGGAGAATGAGGTGATG+GGG | 0.562448 | 4_4:+39458647 | None:intergenic |
| GGATATCTCTTTGTACCCAA+GGG | 0.562534 | 4_4:+39455007 | None:intergenic |
| CCCACAAACTAGCGTACACC+TGG | 0.564764 | 4_4:+39454888 | None:intergenic |
| TAGCTTACAAGATTAGCAGT+TGG | 0.564792 | 4_4:+39457291 | None:intergenic |
| TAGGTCCCTTCAACAATCCC+AGG | 0.566359 | 4_4:-39458526 | Msa0680450:intron |
| AGTGTCGCAGCCAAAATGCC+AGG | 0.566462 | 4_4:+39454845 | None:intergenic |
| TACTCAACAGCATCCTTCCA+TGG | 0.574888 | 4_4:-39455357 | Msa0680450:CDS |
| TCTCTTGGAGAAGTTCTCAA+TGG | 0.576224 | 4_4:-39458068 | Msa0680450:CDS |
| GGAGTGGAATTATAGAGGGT+AGG | 0.577279 | 4_4:-39453593 | Msa0680450:three_prime_UTR |
| CAAAGAAACTCTGAAACTGA+TGG | 0.577705 | 4_4:+39453878 | None:intergenic |
| ATTGTTGCGCTCGTAAATGT+TGG | 0.577891 | 4_4:-39454806 | Msa0680450:CDS |
| CAAATATCTCGTATAAAGCA+GGG | 0.578014 | 4_4:+39457542 | None:intergenic |
| GTAGATATAACCAAAGATGT+TGG | 0.578689 | 4_4:-39457735 | Msa0680450:CDS |
| GACATATGTTCAACTATCTG+TGG | 0.579107 | 4_4:-39454780 | Msa0680450:CDS |
| AACGGTAGAAGATTGTAGAA+TGG | 0.584443 | 4_4:+39458613 | None:intergenic |
| CGATAATTGCTAGGAACAGA+AGG | 0.585429 | 4_4:+39455460 | None:intergenic |
| CTTGGTTGAATTCTTCAACA+AGG | 0.585822 | 4_4:-39453710 | Msa0680450:three_prime_UTR |
| ATTTGAGGTTGATGCGGTAA+CGG | 0.587799 | 4_4:+39458595 | None:intergenic |
| AGAGGGTACCGATAATTGCT+AGG | 0.591090 | 4_4:+39455451 | None:intergenic |
| GTCATGGTGGACTCTCCAGT+TGG | 0.591186 | 4_4:-39455419 | Msa0680450:CDS |
| TTTATACGAGATATTTGAAG+AGG | 0.593080 | 4_4:-39457536 | Msa0680450:CDS |
| TGCAGATCTGTGCTGTGTGG+TGG | 0.593952 | 4_4:-39454035 | Msa0680450:intron |
| TGGCAACCTCATAAACAACC+AGG | 0.593967 | 4_4:+39453533 | None:intergenic |
| TGGAAGACCATGAATGGTGG+TGG | 0.594903 | 4_4:-39454760 | Msa0680450:CDS |
| TCTCAAGCACAAAGTAACAT+TGG | 0.601261 | 4_4:-39453803 | Msa0680450:three_prime_UTR |
| GAAAGTTTGATTCATGGTGG+GGG | 0.605503 | 4_4:-39457858 | Msa0680450:CDS |
| ATCACGATAATAGAGCCCAA+TGG | 0.607721 | 4_4:+39455115 | None:intergenic |
| TTATACGAGATATTTGAAGA+GGG | 0.612050 | 4_4:-39457535 | Msa0680450:CDS |
| AAGATATTGCAATAATGTTG+AGG | 0.614798 | 4_4:+39455158 | None:intergenic |
| ATTCTCAAACCGTAATTCAG+TGG | 0.618167 | 4_4:+39457674 | None:intergenic |
| GGTCATTAGACACACGATTG+AGG | 0.618324 | 4_4:+39453485 | None:intergenic |
| GTTGACCTGGGATTGTTGAA+GGG | 0.620928 | 4_4:+39458521 | None:intergenic |
| GTTGGTTGGAAGTCAATCCA+TGG | 0.623172 | 4_4:-39457374 | Msa0680450:CDS |
| ACCCTCTATCCATACAGTCA+TGG | 0.624597 | 4_4:-39455435 | Msa0680450:CDS |
| GATGAAAGTTTGATTCATGG+TGG | 0.627468 | 4_4:-39457861 | Msa0680450:CDS |
| CTTGTTGAAGAATTCAACCA+AGG | 0.628061 | 4_4:+39453711 | None:intergenic |
| TATCTGTGGAAGACCATGAA+TGG | 0.629462 | 4_4:-39454766 | Msa0680450:CDS |
| AACCAAATTACACTTTGGAG+TGG | 0.632487 | 4_4:+39453464 | None:intergenic |
| ATAGAGAATGCAACAAACAC+CGG | 0.633680 | 4_4:+39455181 | None:intergenic |
| ATCCCATTACTTGCATTCGG+GGG | 0.634423 | 4_4:-39455067 | Msa0680450:CDS |
| CGCAAATGAAGAAGATAGGG+AGG | 0.637904 | 4_4:-39457396 | Msa0680450:CDS |
| GATCCCATTACTTGCATTCG+GGG | 0.641089 | 4_4:-39455068 | Msa0680450:CDS |
| CTCTATCCATACAGTCATGG+TGG | 0.644933 | 4_4:-39455432 | Msa0680450:CDS |
| AAGACCATGAATGGTGGTGG+AGG | 0.651799 | 4_4:-39454757 | Msa0680450:intron |
| GGCAACCTCATAAACAACCA+GGG | 0.655525 | 4_4:+39453534 | None:intergenic |
| CAAAAGCAAAATGATGACGA+AGG | 0.660240 | 4_4:+39457578 | None:intergenic |
| CAGGTGTACGCTAGTTTGTG+GGG | 0.666363 | 4_4:-39454887 | Msa0680450:CDS |
| CCAATTTGCTGAGAATGGAT+GGG | 0.667467 | 4_4:-39455334 | Msa0680450:intron |
| TATGCAAGATCAAGAATGAG+CGG | 0.669114 | 4_4:-39453972 | Msa0680450:CDS |
| GTGTGCAGATCTGTGCTGTG+TGG | 0.676378 | 4_4:-39454038 | Msa0680450:intron |
| AAATCACATCTACAACGTTG+GGG | 0.680330 | 4_4:-39458576 | Msa0680450:CDS |
| GATATCTCTTTGTACCCAAG+GGG | 0.684564 | 4_4:+39455008 | None:intergenic |
| GCTTTACGGGAAGAAAGGAG+TGG | 0.689124 | 4_4:-39453609 | Msa0680450:three_prime_UTR |
| GCAACCTCATAAACAACCAG+GGG | 0.692045 | 4_4:+39453535 | None:intergenic |
| GAGGCTTGAATACATCACCA+TGG | 0.694814 | 4_4:+39457357 | None:intergenic |
| GATGTGATTTGAGGTTGATG+CGG | 0.702090 | 4_4:+39458589 | None:intergenic |
| AATGGTGTTCTCCTGTACCA+AGG | 0.705648 | 4_4:+39454965 | None:intergenic |
| CTGTGGAAGACCATGAATGG+TGG | 0.732393 | 4_4:-39454763 | Msa0680450:CDS |
| CAACCTCATAAACAACCAGG+GGG | 0.765718 | 4_4:+39453536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAAATCAAATAATTA+AGG | - | chr4_4:39453989-39454008 | Msa0680450:CDS | 10.0% |
| !! | AATGAAAATCAAATAATTAA+GGG | - | chr4_4:39453990-39454009 | Msa0680450:CDS | 10.0% |
| !! | AAAGAAAAATTGAATGAAAA+TGG | + | chr4_4:39453704-39453723 | None:intergenic | 15.0% |
| !! | ATGAAAATCAAATAATTAAG+GGG | - | chr4_4:39453991-39454010 | Msa0680450:CDS | 15.0% |
| !! | ATTGTAAAATGAATATAGTT+AGG | + | chr4_4:39454721-39454740 | None:intergenic | 15.0% |
| !!! | CTATATTCATTTTACAATTT+AGG | - | chr4_4:39454723-39454742 | Msa0680450:intron | 15.0% |
| !! | TTAAATATTTCTTGATTGTT+TGG | + | chr4_4:39455322-39455341 | None:intergenic | 15.0% |
| !!! | CTTTTAATATTCTATATTCA+AGG | + | chr4_4:39456370-39456389 | None:intergenic | 15.0% |
| !! | AGAAATTAAATTGAAAAGAA+AGG | + | chr4_4:39456594-39456613 | None:intergenic | 15.0% |
| !!! | TTCTTTTCAATTTAATTTCT+TGG | - | chr4_4:39456594-39456613 | Msa0680450:intron | 15.0% |
| !! | GGTTAAAAATGAAATAAAAA+TGG | + | chr4_4:39456879-39456898 | None:intergenic | 15.0% |
| !!! | ACTTTGAAACTAAAATTTAT+CGG | + | chr4_4:39457817-39457836 | None:intergenic | 15.0% |
| !! | TGAAAATTGAATGAAAATAG+AGG | + | chr4_4:39453666-39453685 | None:intergenic | 20.0% |
| !! | AAATAATTAAGGGGTTTAAT+TGG | - | chr4_4:39454000-39454019 | Msa0680450:CDS | 20.0% |
| !! | TGATGTTAAATTCACTTATT+CGG | - | chr4_4:39454441-39454460 | Msa0680450:intron | 20.0% |
| !!! | AAGGATTTTATTACAAACAT+AGG | + | chr4_4:39455032-39455051 | None:intergenic | 20.0% |
| !!! | CCTCAAGTTTTTTTTTTTTT+TGG | + | chr4_4:39455299-39455318 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAAAAACTTG+AGG | - | chr4_4:39455296-39455315 | Msa0680450:intron | 20.0% |
| !! | GATATGATTTATAGTAAGTT+TGG | - | chr4_4:39455362-39455381 | Msa0680450:CDS | 20.0% |
| !! | TTCTAATATAGAAATCAAAG+AGG | - | chr4_4:39455738-39455757 | Msa0680450:intron | 20.0% |
| !! | AGAGGAATATTTATGTAAAT+AGG | - | chr4_4:39456014-39456033 | Msa0680450:intron | 20.0% |
| !!! | AAAAACCCAAATTTTGAATT+GGG | + | chr4_4:39456216-39456235 | None:intergenic | 20.0% |
| !!! | ATCGTGATTATTAGTTTATT+TGG | - | chr4_4:39457050-39457069 | Msa0680450:intron | 20.0% |
| !! | AGAAAAAACATTAAAAGTGA+TGG | + | chr4_4:39457459-39457478 | None:intergenic | 20.0% |
| !! | AATACATTTAATTGCTTCAA+AGG | - | chr4_4:39457883-39457902 | Msa0680450:CDS | 20.0% |
| !!! | TTTTAAAAAGTACAGGAATA+GGG | - | chr4_4:39457906-39457925 | Msa0680450:CDS | 20.0% |
| !! | AGTAAGTTGAATAAACTTGA+TGG | - | chr4_4:39453395-39453414 | Msa0680450:three_prime_UTR | 25.0% |
| ! | CTACTTTGTTGACAAAAAAT+GGG | + | chr4_4:39453607-39453626 | None:intergenic | 25.0% |
| ! | TGGTAATTCATAGTATTCAT+AGG | + | chr4_4:39453751-39453770 | None:intergenic | 25.0% |
| !! | GATTCTATCTTTTCACTATT+GGG | + | chr4_4:39454064-39454083 | None:intergenic | 25.0% |
| !! | AGATTCTATCTTTTCACTAT+TGG | + | chr4_4:39454065-39454084 | None:intergenic | 25.0% |
| ! | TTTGTATGAGTTCAAATTCA+GGG | - | chr4_4:39454123-39454142 | Msa0680450:intron | 25.0% |
| ! | AAGCTTACAATTGATGAAAT+TGG | - | chr4_4:39454178-39454197 | Msa0680450:intron | 25.0% |
| ! | TTTATACGAGATATTTGAAG+AGG | - | chr4_4:39454614-39454633 | Msa0680450:intron | 25.0% |
| ! | TTATACGAGATATTTGAAGA+GGG | - | chr4_4:39454615-39454634 | Msa0680450:intron | 25.0% |
| !!! | TACAAGAGAAGATTTTTAGT+AGG | - | chr4_4:39454678-39454697 | Msa0680450:intron | 25.0% |
| ! | ACACTTCATATATTGTTATG+AGG | + | chr4_4:39454977-39454996 | None:intergenic | 25.0% |
| !! | ATTTTGTACAAGATAAGAGT+GGG | - | chr4_4:39455169-39455188 | Msa0680450:CDS | 25.0% |
| ! | GTCAATAAATTCATCTTTGA+AGG | - | chr4_4:39455468-39455487 | Msa0680450:CDS | 25.0% |
| ! | TACAGAAGTTGAAAGAATTA+GGG | + | chr4_4:39455541-39455560 | None:intergenic | 25.0% |
| ! | TAGAAAGATATCATATTCCA+TGG | + | chr4_4:39455584-39455603 | None:intergenic | 25.0% |
| !! | TTTTCTCATGTTACACAAAT+GGG | + | chr4_4:39455806-39455825 | None:intergenic | 25.0% |
| ! | CAATTTACAAGTAAACTGTT+AGG | - | chr4_4:39455928-39455947 | Msa0680450:intron | 25.0% |
| ! | ACTGTTAGGATATAGAATAA+AGG | - | chr4_4:39455942-39455961 | Msa0680450:intron | 25.0% |
| ! | CTGTTAGGATATAGAATAAA+GGG | - | chr4_4:39455943-39455962 | Msa0680450:intron | 25.0% |
| ! | TGTTAGGATATAGAATAAAG+GGG | - | chr4_4:39455944-39455963 | Msa0680450:intron | 25.0% |
| ! | TTAAGAGTAATTAGAGTAGT+TGG | - | chr4_4:39455977-39455996 | Msa0680450:intron | 25.0% |
| ! | GGAATATTTATGTAAATAGG+AGG | - | chr4_4:39456017-39456036 | Msa0680450:intron | 25.0% |
| !! | CAAAAACCCAAATTTTGAAT+TGG | + | chr4_4:39456217-39456236 | None:intergenic | 25.0% |
| ! | AAAGAATATTAAAGGATCGA+GGG | - | chr4_4:39456308-39456327 | Msa0680450:intron | 25.0% |
| ! | ATATTAAAAGTAGTTAGAGC+AGG | - | chr4_4:39456380-39456399 | Msa0680450:intron | 25.0% |
| !! | GAAAGGACTATTTTATTGAA+AGG | + | chr4_4:39456577-39456596 | None:intergenic | 25.0% |
| ! | AAAGTTAACGACTTTATGTT+AGG | + | chr4_4:39456622-39456641 | None:intergenic | 25.0% |
| ! | AATTCTATATGCATTTCTCA+AGG | - | chr4_4:39456840-39456859 | Msa0680450:intron | 25.0% |
| ! | AAGATATTGCAATAATGTTG+AGG | + | chr4_4:39456995-39457014 | None:intergenic | 25.0% |
| ! | ACATTATTGCAATATCTTAC+AGG | - | chr4_4:39456997-39457016 | Msa0680450:intron | 25.0% |
| ! | CATTATTGCAATATCTTACA+GGG | - | chr4_4:39456998-39457017 | Msa0680450:intron | 25.0% |
| ! | ACACCATTTCAAATGTTTAT+TGG | - | chr4_4:39457200-39457219 | Msa0680450:intron | 25.0% |
| !! | TGATTTTACTTAAGATGTCA+TGG | + | chr4_4:39457539-39457558 | None:intergenic | 25.0% |
| ! | ACATGCATATCTATCTATTT+GGG | + | chr4_4:39457646-39457665 | None:intergenic | 25.0% |
| ! | TACATGCATATCTATCTATT+TGG | + | chr4_4:39457647-39457666 | None:intergenic | 25.0% |
| ! | TAAGAATTGTGATATCAATG+TGG | + | chr4_4:39457762-39457781 | None:intergenic | 25.0% |
| !! | TATCTCTATCTTTGTTTACT+AGG | + | chr4_4:39457790-39457809 | None:intergenic | 25.0% |
| ! | TAGTTTCAAAGTTTGTACAT+AGG | - | chr4_4:39457825-39457844 | Msa0680450:CDS | 25.0% |
| !!! | TCAAAGGTTTTAAAAAGTAC+AGG | - | chr4_4:39457899-39457918 | Msa0680450:CDS | 25.0% |
| !!! | GTTTTAAAAAGTACAGGAAT+AGG | - | chr4_4:39457905-39457924 | Msa0680450:CDS | 25.0% |
| !! | TGTTCTCTTTTCTTTAATTC+TGG | - | chr4_4:39457952-39457971 | Msa0680450:CDS | 25.0% |
| !! | TTACAAAGCTTTATACTGAA+GGG | + | chr4_4:39458069-39458088 | None:intergenic | 25.0% |
| !! | ATTACAAAGCTTTATACTGA+AGG | + | chr4_4:39458070-39458089 | None:intergenic | 25.0% |
| ! | TTACAACTATCCTTCTTTAT+TGG | - | chr4_4:39458205-39458224 | Msa0680450:intron | 25.0% |
| !! | TTTGATAACAGTTTATTCCT+TGG | - | chr4_4:39458422-39458441 | Msa0680450:intron | 25.0% |
| !! | AGCAAGTTAAACGATAATTT+TGG | - | chr4_4:39458818-39458837 | Msa0680450:five_prime_UTR | 25.0% |
| !! | GCAAGTTAAACGATAATTTT+GGG | - | chr4_4:39458819-39458838 | Msa0680450:five_prime_UTR | 25.0% |
| ACCTAGAACAAGAACTAATT+AGG | - | chr4_4:39453372-39453391 | Msa0680450:three_prime_UTR | 30.0% | |
| ! | TCCTAATTAGTTCTTGTTCT+AGG | + | chr4_4:39453376-39453395 | None:intergenic | 30.0% |
| GTTGAAGAAAACACAATCTA+TGG | - | chr4_4:39453475-39453494 | Msa0680450:three_prime_UTR | 30.0% | |
| CCTACTTTGTTGACAAAAAA+TGG | + | chr4_4:39453608-39453627 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTCAACAAAGT+AGG | - | chr4_4:39453605-39453624 | Msa0680450:three_prime_UTR | 30.0% |
| ACATCGACACTTCTAATAAA+AGG | + | chr4_4:39453948-39453967 | None:intergenic | 30.0% | |
| !! | TATTAGAAGTGTCGATGTTA+CGG | - | chr4_4:39453950-39453969 | Msa0680450:CDS | 30.0% |
| GAACTACTTGGATTTGAAAA+AGG | - | chr4_4:39454022-39454041 | Msa0680450:CDS | 30.0% | |
| AGTGAAAAGATAGAATCTCT+TGG | - | chr4_4:39454067-39454086 | Msa0680450:intron | 30.0% | |
| GTTTGTATGAGTTCAAATTC+AGG | - | chr4_4:39454122-39454141 | Msa0680450:intron | 30.0% | |
| !! | ATCTTGATGATCTTCCATTT+TGG | - | chr4_4:39454245-39454264 | Msa0680450:intron | 30.0% |
| !! | TCTTGATGATCTTCCATTTT+GGG | - | chr4_4:39454246-39454265 | Msa0680450:intron | 30.0% |
| GAAGATGAAAGTTTGATTCA+TGG | - | chr4_4:39454286-39454305 | Msa0680450:intron | 30.0% | |
| ATGAAAGTTTGATTCATGGT+GGG | - | chr4_4:39454290-39454309 | Msa0680450:intron | 30.0% | |
| AGCTTGATGTTCTTTACAAT+GGG | - | chr4_4:39454347-39454366 | Msa0680450:intron | 30.0% | |
| !! | GTTGTAGAAGTAAAAGCATT+TGG | - | chr4_4:39454376-39454395 | Msa0680450:intron | 30.0% |
| GTAGATATAACCAAAGATGT+TGG | - | chr4_4:39454415-39454434 | Msa0680450:intron | 30.0% | |
| AATTCACTTATTCGGTTATC+TGG | - | chr4_4:39454449-39454468 | Msa0680450:intron | 30.0% | |
| ATTACGGTTTGAGAATAGAA+TGG | - | chr4_4:39454483-39454502 | Msa0680450:intron | 30.0% | |
| TTGTGTATCGTAAAGTTCAT+TGG | - | chr4_4:39454533-39454552 | Msa0680450:intron | 30.0% | |
| CAAATATCTCGTATAAAGCA+GGG | + | chr4_4:39454611-39454630 | None:intergenic | 30.0% | |
| TCAAATATCTCGTATAAAGC+AGG | + | chr4_4:39454612-39454631 | None:intergenic | 30.0% | |
| ACAACAGCAAAAAATAAGGA+CGG | + | chr4_4:39454827-39454846 | None:intergenic | 30.0% | |
| !!! | TCCTTATTTTTTGCTGTTGT+GGG | - | chr4_4:39454827-39454846 | Msa0680450:CDS | 30.0% |
| AAAACTAGAGGCTGAATATT+TGG | + | chr4_4:39454941-39454960 | None:intergenic | 30.0% | |
| GTCTAGATTTAGATTGGTAA+AGG | + | chr4_4:39455051-39455070 | None:intergenic | 30.0% | |
| ! | TTGGTAGTCTAGATTTAGAT+TGG | + | chr4_4:39455057-39455076 | None:intergenic | 30.0% |
| !! | AAGAGAAAAAAGAGTACTTC+TGG | + | chr4_4:39455093-39455112 | None:intergenic | 30.0% |
| ! | GATTTTGTACAAGATAAGAG+TGG | - | chr4_4:39455168-39455187 | Msa0680450:CDS | 30.0% |
| ! | GATTTTTGCATAAGGTGATT+CGG | - | chr4_4:39455198-39455217 | Msa0680450:CDS | 30.0% |
| ! | ATTTTTGCATAAGGTGATTC+GGG | - | chr4_4:39455199-39455218 | Msa0680450:CDS | 30.0% |
| AAGAGTAGCATAAATGTTAG+AGG | - | chr4_4:39455263-39455282 | Msa0680450:intron | 30.0% | |
| AAGCATTTACCTATTAGACA+GGG | + | chr4_4:39455406-39455425 | None:intergenic | 30.0% | |
| GTACAGAAGTTGAAAGAATT+AGG | + | chr4_4:39455542-39455561 | None:intergenic | 30.0% | |
| CAAACACAACATTTAGTCAA+GGG | + | chr4_4:39455660-39455679 | None:intergenic | 30.0% | |
| ACAAACACAACATTTAGTCA+AGG | + | chr4_4:39455661-39455680 | None:intergenic | 30.0% | |
| CATGCATTGTATGTGTTTAA+GGG | + | chr4_4:39455707-39455726 | None:intergenic | 30.0% | |
| ACATGCATTGTATGTGTTTA+AGG | + | chr4_4:39455708-39455727 | None:intergenic | 30.0% | |
| ! | CTTTTCTCATGTTACACAAA+TGG | + | chr4_4:39455807-39455826 | None:intergenic | 30.0% |
| TATGTAAATAGGAGGATACA+AGG | - | chr4_4:39456025-39456044 | Msa0680450:intron | 30.0% | |
| ! | GATTTTACGTTCCTAATTTG+AGG | - | chr4_4:39456154-39456173 | Msa0680450:intron | 30.0% |
| ATCTAGCCCAATTCAAAATT+TGG | - | chr4_4:39456207-39456226 | Msa0680450:intron | 30.0% | |
| TCTAGCCCAATTCAAAATTT+GGG | - | chr4_4:39456208-39456227 | Msa0680450:intron | 30.0% | |
| CGATCCTTTAATATTCTTTC+TGG | + | chr4_4:39456307-39456326 | None:intergenic | 30.0% | |
| GAAAGAATATTAAAGGATCG+AGG | - | chr4_4:39456307-39456326 | Msa0680450:intron | 30.0% | |
| ! | TAGAAAAGTGCATGTTAGTA+AGG | + | chr4_4:39456658-39456677 | None:intergenic | 30.0% |
| CCTCCAATAAACATTTGAAA+TGG | + | chr4_4:39457206-39457225 | None:intergenic | 30.0% | |
| CCATTTCAAATGTTTATTGG+AGG | - | chr4_4:39457203-39457222 | Msa0680450:intron | 30.0% | |
| ! | AATTTTCATCCAATTACACC+AGG | - | chr4_4:39457244-39457263 | Msa0680450:intron | 30.0% |
| TACAAAATATACACTCTTCC+TGG | - | chr4_4:39457287-39457306 | Msa0680450:intron | 30.0% | |
| TCAAGTACACAATCAAAAGA+AGG | + | chr4_4:39457494-39457513 | None:intergenic | 30.0% | |
| TTAAGATGTCATGGCTATTA+AGG | + | chr4_4:39457530-39457549 | None:intergenic | 30.0% | |
| ! | CTATCTTTGTTTACTAGGAT+GGG | + | chr4_4:39457785-39457804 | None:intergenic | 30.0% |
| ! | TCTATCTTTGTTTACTAGGA+TGG | + | chr4_4:39457786-39457805 | None:intergenic | 30.0% |
| TTTCAAAGTTTGTACATAGG+AGG | - | chr4_4:39457828-39457847 | Msa0680450:CDS | 30.0% | |
| TATGCTTTCTTCCTGATATT+TGG | - | chr4_4:39458247-39458266 | Msa0680450:intron | 30.0% | |
| CAATTTGCAATCAAACATGT+TGG | + | chr4_4:39458640-39458659 | None:intergenic | 30.0% | |
| AGCAAAACCAAATTACACTT+TGG | + | chr4_4:39458694-39458713 | None:intergenic | 30.0% | |
| CTCACATTTAACTAACATCA+GGG | + | chr4_4:39458757-39458776 | None:intergenic | 30.0% | |
| ACTCACATTTAACTAACATC+AGG | + | chr4_4:39458758-39458777 | None:intergenic | 30.0% | |
| GGAGTTTCATGACTTATAAC+AGG | - | chr4_4:39453416-39453435 | Msa0680450:three_prime_UTR | 35.0% | |
| TGACTTATAACAGGTGTAAG+AGG | - | chr4_4:39453425-39453444 | Msa0680450:three_prime_UTR | 35.0% | |
| ATTGTAGAATGGTGAAGATG+AGG | + | chr4_4:39453529-39453548 | None:intergenic | 35.0% | |
| AACGGTAGAAGATTGTAGAA+TGG | + | chr4_4:39453540-39453559 | None:intergenic | 35.0% | |
| AACGTTGTAGATGTGATTTG+AGG | + | chr4_4:39453573-39453592 | None:intergenic | 35.0% | |
| TCAAATCACATCTACAACGT+TGG | - | chr4_4:39453572-39453591 | Msa0680450:three_prime_UTR | 35.0% | |
| CAAATCACATCTACAACGTT+GGG | - | chr4_4:39453573-39453592 | Msa0680450:three_prime_UTR | 35.0% | |
| AAATCACATCTACAACGTTG+GGG | - | chr4_4:39453574-39453593 | Msa0680450:three_prime_UTR | 35.0% | |
| GACTTAAATTGTAACTGACC+TGG | + | chr4_4:39453783-39453802 | None:intergenic | 35.0% | |
| TAATCACATGTGTCACATGT+CGG | - | chr4_4:39453910-39453929 | Msa0680450:CDS | 35.0% | |
| ! | TGATGAAATTGGTGTCTTGA+AGG | - | chr4_4:39454189-39454208 | Msa0680450:intron | 35.0% |
| GTCTTGAAGGAAGCTATAAA+CGG | - | chr4_4:39454202-39454221 | Msa0680450:intron | 35.0% | |
| !! | CTTGATGATCTTCCATTTTG+GGG | - | chr4_4:39454247-39454266 | Msa0680450:intron | 35.0% |
| !! | TTGATGATCTTCCATTTTGG+GGG | - | chr4_4:39454248-39454267 | Msa0680450:intron | 35.0% |
| GATGAAAGTTTGATTCATGG+TGG | - | chr4_4:39454289-39454308 | Msa0680450:intron | 35.0% | |
| TGAAAGTTTGATTCATGGTG+GGG | - | chr4_4:39454291-39454310 | Msa0680450:intron | 35.0% | |
| CAAGCTGAACATGTGTAAAA+AGG | + | chr4_4:39454333-39454352 | None:intergenic | 35.0% | |
| CAGCTTGATGTTCTTTACAA+TGG | - | chr4_4:39454346-39454365 | Msa0680450:intron | 35.0% | |
| AACATCAATGCCAACATCTT+TGG | + | chr4_4:39454428-39454447 | None:intergenic | 35.0% | |
| ATTCTCAAACCGTAATTCAG+TGG | + | chr4_4:39454479-39454498 | None:intergenic | 35.0% | |
| ! | CAAAAGCAAAATGATGACGA+AGG | + | chr4_4:39454575-39454594 | None:intergenic | 35.0% |
| ! | CTTCGTCATCATTTTGCTTT+TGG | - | chr4_4:39454573-39454592 | Msa0680450:intron | 35.0% |
| TAGCGCAAATGAAGAAGATA+GGG | - | chr4_4:39454751-39454770 | Msa0680450:intron | 35.0% | |
| CAACAGCAAAAAATAAGGAC+GGG | + | chr4_4:39454826-39454845 | None:intergenic | 35.0% | |
| !!! | GTCCTTATTTTTTGCTGTTG+TGG | - | chr4_4:39454826-39454845 | Msa0680450:CDS | 35.0% |
| TCCCACAACAGCAAAAAATA+AGG | + | chr4_4:39454831-39454850 | None:intergenic | 35.0% | |
| !!! | ATTTTTTGCTGTTGTGGGAA+TGG | - | chr4_4:39454832-39454851 | Msa0680450:CDS | 35.0% |
| !!! | TTTTTTGCTGTTGTGGGAAT+GGG | - | chr4_4:39454833-39454852 | Msa0680450:CDS | 35.0% |
| AGCTTACAAGATTAGCAGTT+GGG | + | chr4_4:39454861-39454880 | None:intergenic | 35.0% | |
| TAGCTTACAAGATTAGCAGT+TGG | + | chr4_4:39454862-39454881 | None:intergenic | 35.0% | |
| !!! | TTCAGCCTCTAGTTTTTACA+TGG | - | chr4_4:39454945-39454964 | Msa0680450:CDS | 35.0% |
| CAATGCCATGTAAAAACTAG+AGG | + | chr4_4:39454953-39454972 | None:intergenic | 35.0% | |
| AGACTACCAAGTGATAGTAA+AGG | - | chr4_4:39455067-39455086 | Msa0680450:CDS | 35.0% | |
| ! | CTCTTGATTTTTGCTTTCAC+TGG | - | chr4_4:39455108-39455127 | Msa0680450:CDS | 35.0% |
| TTACCTATTAGACAGGGTAT+TGG | + | chr4_4:39455400-39455419 | None:intergenic | 35.0% | |
| ! | GAAGCATTTACCTATTAGAC+AGG | + | chr4_4:39455407-39455426 | None:intergenic | 35.0% |
| GAAGTTGAAAGAATTAGGGT+TGG | + | chr4_4:39455537-39455556 | None:intergenic | 35.0% | |
| !! | TTGTTTTTCTCATGTCCCTT+GGG | + | chr4_4:39455911-39455930 | None:intergenic | 35.0% |
| !! | ATTGTTTTTCTCATGTCCCT+TGG | + | chr4_4:39455912-39455931 | None:intergenic | 35.0% |
| GAGTAATTAGAGTAGTTGGT+TGG | - | chr4_4:39455981-39456000 | Msa0680450:intron | 35.0% | |
| ATGAACTTTGGCCTCAAATT+AGG | + | chr4_4:39456168-39456187 | None:intergenic | 35.0% | |
| ! | AATTTGAGGCCAAAGTTCAT+TGG | - | chr4_4:39456168-39456187 | Msa0680450:intron | 35.0% |
| ! | ATTTGAGGCCAAAGTTCATT+GGG | - | chr4_4:39456169-39456188 | Msa0680450:intron | 35.0% |
| GGGTCCAGAAAGAATATTAA+AGG | - | chr4_4:39456300-39456319 | Msa0680450:intron | 35.0% | |
| AATATTAAAGGATCGAGGGA+AGG | - | chr4_4:39456312-39456331 | Msa0680450:intron | 35.0% | |
| AAGGAAGATACAAGGATAGA+GGG | - | chr4_4:39456340-39456359 | Msa0680450:intron | 35.0% | |
| TTAAAAGTAGTTAGAGCAGG+TGG | - | chr4_4:39456383-39456402 | Msa0680450:intron | 35.0% | |
| ACAGGAATCTTTGCAGAAAT+AGG | - | chr4_4:39456412-39456431 | Msa0680450:intron | 35.0% | |
| ! | ACTAACATGCACTTTTCTAC+AGG | - | chr4_4:39456659-39456678 | Msa0680450:intron | 35.0% |
| CTTCTGTTCCTAGCAATTAT+CGG | - | chr4_4:39456691-39456710 | Msa0680450:intron | 35.0% | |
| !!! | CTCTTTCATCTGTTTTTGCT+GGG | - | chr4_4:39456770-39456789 | Msa0680450:intron | 35.0% |
| AGTCAAGACAGAGAAATAGT+TGG | + | chr4_4:39456900-39456919 | None:intergenic | 35.0% | |
| ATAGAGAATGCAACAAACAC+CGG | + | chr4_4:39456972-39456991 | None:intergenic | 35.0% | |
| !! | GAGTAATTGGATATCGGTTT+AGG | - | chr4_4:39457105-39457124 | Msa0680450:intron | 35.0% |
| !!! | ATTGGAGGTTTTGTTCCTTT+TGG | - | chr4_4:39457218-39457237 | Msa0680450:intron | 35.0% |
| TGGATGAAAATTGCACCAAA+AGG | + | chr4_4:39457236-39457255 | None:intergenic | 35.0% | |
| GACATATGTTCAACTATCTG+TGG | - | chr4_4:39457370-39457389 | Msa0680450:CDS | 35.0% | |
| ACAATCAAAAGAAGGAAGCT+AGG | + | chr4_4:39457486-39457505 | None:intergenic | 35.0% | |
| TATGCATGTAACTGATCTTG+TGG | - | chr4_4:39457657-39457676 | Msa0680450:CDS | 35.0% | |
| ! | TGATCTTGTGGTTTTCTGTA+GGG | - | chr4_4:39457669-39457688 | Msa0680450:CDS | 35.0% |
| AATGTGGATATTAAGCCATG+AGG | + | chr4_4:39457746-39457765 | None:intergenic | 35.0% | |
| !! | TCAACAGCCATTTTCATGTT+TGG | - | chr4_4:39458139-39458158 | Msa0680450:intron | 35.0% |
| !! | GCCATTTTCATGTTTGGTTA+CGG | - | chr4_4:39458145-39458164 | Msa0680450:intron | 35.0% |
| ACCGTAACCAAACATGAAAA+TGG | + | chr4_4:39458149-39458168 | None:intergenic | 35.0% | |
| TATGCAAGATCAAGAATGAG+CGG | - | chr4_4:39458178-39458197 | Msa0680450:intron | 35.0% | |
| !! | CAAAGAAACTCTGAAACTGA+TGG | + | chr4_4:39458275-39458294 | None:intergenic | 35.0% |
| ! | CTCACTCTCTTTTGACATTA+TGG | + | chr4_4:39458318-39458337 | None:intergenic | 35.0% |
| TCTCAAGCACAAAGTAACAT+TGG | - | chr4_4:39458347-39458366 | Msa0680450:intron | 35.0% | |
| GATTGATGAACTCTTCTCTT+TGG | - | chr4_4:39458381-39458400 | Msa0680450:intron | 35.0% | |
| CTTGTTGAAGAATTCAACCA+AGG | + | chr4_4:39458442-39458461 | None:intergenic | 35.0% | |
| CTTGGTTGAATTCTTCAACA+AGG | - | chr4_4:39458440-39458459 | Msa0680450:intron | 35.0% | |
| CTGAATCAAGACTAAATCCA+TGG | - | chr4_4:39458501-39458520 | Msa0680450:intron | 35.0% | |
| AGAAAGGAGTGGAATTATAG+AGG | - | chr4_4:39458552-39458571 | Msa0680450:CDS | 35.0% | |
| GAAAGGAGTGGAATTATAGA+GGG | - | chr4_4:39458553-39458572 | Msa0680450:CDS | 35.0% | |
| ! | AACCAAATTACACTTTGGAG+TGG | + | chr4_4:39458689-39458708 | None:intergenic | 35.0% |
| !! | ATTTGAGGTTGATGCGGTAA+CGG | + | chr4_4:39453558-39453577 | None:intergenic | 40.0% |
| !! | GATGTGATTTGAGGTTGATG+CGG | + | chr4_4:39453564-39453583 | None:intergenic | 40.0% |
| GTGAAGAGAATTGTTGACCT+GGG | + | chr4_4:39453644-39453663 | None:intergenic | 40.0% | |
| GAATTACCATTCTGCAAACC+AGG | - | chr4_4:39453762-39453781 | Msa0680450:three_prime_UTR | 40.0% | |
| ACCAAAATCAGTGTCGTATC+CGG | + | chr4_4:39453860-39453879 | None:intergenic | 40.0% | |
| ! | CTTCTAATAAAAGGCGTGTC+CGG | + | chr4_4:39453939-39453958 | None:intergenic | 40.0% |
| GGGGTTTAATTGGAACTACT+TGG | - | chr4_4:39454010-39454029 | Msa0680450:CDS | 40.0% | |
| TCTCTTGGAGAAGTTCTCAA+TGG | - | chr4_4:39454082-39454101 | Msa0680450:intron | 40.0% | |
| AATGGTGATCGTTTGAGCAA+TGG | - | chr4_4:39454100-39454119 | Msa0680450:intron | 40.0% | |
| GAAAGTTTGATTCATGGTGG+GGG | - | chr4_4:39454292-39454311 | Msa0680450:intron | 40.0% | |
| GTTATATCTACAGCGCGATT+TGG | + | chr4_4:39454406-39454425 | None:intergenic | 40.0% | |
| ! | TCTGGAATGCCACTGAATTA+CGG | - | chr4_4:39454467-39454486 | Msa0680450:intron | 40.0% |
| CTAGCGCAAATGAAGAAGAT+AGG | - | chr4_4:39454750-39454769 | Msa0680450:intron | 40.0% | |
| AATGAAGAAGATAGGGAGGT+TGG | - | chr4_4:39454758-39454777 | Msa0680450:CDS | 40.0% | |
| ! | TTCTGGCCTTTACTATCACT+TGG | + | chr4_4:39455076-39455095 | None:intergenic | 40.0% |
| ! | CACTGGTCTGTTCTTATGTA+TGG | - | chr4_4:39455125-39455144 | Msa0680450:CDS | 40.0% |
| GTCTGTTCTTATGTATGGTG+TGG | - | chr4_4:39455130-39455149 | Msa0680450:CDS | 40.0% | |
| TTGTACAAGATAAGAGTGGG+TGG | - | chr4_4:39455172-39455191 | Msa0680450:CDS | 40.0% | |
| ! | GGTGGTAGGATTTTTGCATA+AGG | - | chr4_4:39455190-39455209 | Msa0680450:CDS | 40.0% |
| !! | TTAGACAGGGTATTGGCTTA+TGG | + | chr4_4:39455393-39455412 | None:intergenic | 40.0% |
| AAGCCAATACCCTGTCTAAT+AGG | - | chr4_4:39455394-39455413 | Msa0680450:CDS | 40.0% | |
| CAAGTAACAAAGTCTGTCAC+TGG | + | chr4_4:39455441-39455460 | None:intergenic | 40.0% | |
| TATTCCATGGCAAAGATACC+AGG | + | chr4_4:39455571-39455590 | None:intergenic | 40.0% | |
| TGGGGGACATCTGATAAAAT+TGG | + | chr4_4:39455892-39455911 | None:intergenic | 40.0% | |
| ! | ATTTTATCAGATGTCCCCCA+AGG | - | chr4_4:39455892-39455911 | Msa0680450:intron | 40.0% |
| ! | TTTTATCAGATGTCCCCCAA+GGG | - | chr4_4:39455893-39455912 | Msa0680450:intron | 40.0% |
| ! | TGTTTTTCTCATGTCCCTTG+GGG | + | chr4_4:39455910-39455929 | None:intergenic | 40.0% |
| ! | AGAGTAGTTGGTTGGTTAGT+CGG | - | chr4_4:39455989-39456008 | Msa0680450:intron | 40.0% |
| ! | AATTGGGCTAGATGTACCTT+GGG | + | chr4_4:39456200-39456219 | None:intergenic | 40.0% |
| !! | AGGCATTGAAGGAAGATACA+AGG | - | chr4_4:39456332-39456351 | Msa0680450:intron | 40.0% |
| GAAGGAAGATACAAGGATAG+AGG | - | chr4_4:39456339-39456358 | Msa0680450:intron | 40.0% | |
| AAGATACAAGGATAGAGGGA+AGG | - | chr4_4:39456344-39456363 | Msa0680450:intron | 40.0% | |
| GGAATCTTTGCAGAAATAGG+AGG | - | chr4_4:39456415-39456434 | Msa0680450:intron | 40.0% | |
| TGCAGAAATAGGAGGATACA+AGG | - | chr4_4:39456423-39456442 | Msa0680450:intron | 40.0% | |
| ATAGGAGGATACAAGGATAG+AGG | - | chr4_4:39456430-39456449 | Msa0680450:intron | 40.0% | |
| TAGGAGGATACAAGGATAGA+GGG | - | chr4_4:39456431-39456450 | Msa0680450:intron | 40.0% | |
| TTGTAGAGGAGGAAACTCTT+GGG | - | chr4_4:39456502-39456521 | Msa0680450:intron | 40.0% | |
| CGATAATTGCTAGGAACAGA+AGG | + | chr4_4:39456693-39456712 | None:intergenic | 40.0% | |
| ACCATGACTGTATGGATAGA+GGG | + | chr4_4:39456719-39456738 | None:intergenic | 40.0% | |
| CAGATGAAAGAGCGAATAGA+AGG | + | chr4_4:39456762-39456781 | None:intergenic | 40.0% | |
| !!! | GCTCTTTCATCTGTTTTTGC+TGG | - | chr4_4:39456769-39456788 | Msa0680450:intron | 40.0% |
| !! | CCAATTTGCTGAGAATGGAT+GGG | - | chr4_4:39456816-39456835 | Msa0680450:intron | 40.0% |
| !! | AGAAGAGTGTTAGTCTAGCT+GGG | - | chr4_4:39456931-39456950 | Msa0680450:intron | 40.0% |
| CTAGCTGGGATTCTTTACAT+TGG | - | chr4_4:39456945-39456964 | Msa0680450:intron | 40.0% | |
| TGGGATTCTTTACATTGGTC+CGG | - | chr4_4:39456950-39456969 | Msa0680450:intron | 40.0% | |
| TCACGATAATAGAGCCCAAT+GGG | + | chr4_4:39457037-39457056 | None:intergenic | 40.0% | |
| ATCACGATAATAGAGCCCAA+TGG | + | chr4_4:39457038-39457057 | None:intergenic | 40.0% | |
| TCGATCCCATTACTTGCATT+CGG | - | chr4_4:39457080-39457099 | Msa0680450:intron | 40.0% | |
| GATATCTCTTTGTACCCAAG+GGG | + | chr4_4:39457145-39457164 | None:intergenic | 40.0% | |
| GGATATCTCTTTGTACCCAA+GGG | + | chr4_4:39457146-39457165 | None:intergenic | 40.0% | |
| GGAAGCTGTTGAATCTCTTT+CGG | + | chr4_4:39457167-39457186 | None:intergenic | 40.0% | |
| AAGAGATTCAACAGCTTCCT+TGG | - | chr4_4:39457168-39457187 | Msa0680450:intron | 40.0% | |
| ! | ATACACTCTTCCTGGCATTT+TGG | - | chr4_4:39457295-39457314 | Msa0680450:intron | 40.0% |
| ATTGTTGCGCTCGTAAATGT+TGG | - | chr4_4:39457344-39457363 | Msa0680450:CDS | 40.0% | |
| TATCTGTGGAAGACCATGAA+TGG | - | chr4_4:39457384-39457403 | Msa0680450:CDS | 40.0% | |
| GATGTCAGATACTACACTAG+AGG | + | chr4_4:39457612-39457631 | None:intergenic | 40.0% | |
| ! | CTGATCTTGTGGTTTTCTGT+AGG | - | chr4_4:39457668-39457687 | Msa0680450:CDS | 40.0% |
| ! | GATCTTGTGGTTTTCTGTAG+GGG | - | chr4_4:39457670-39457689 | Msa0680450:CDS | 40.0% |
| GAGGATGAATCAGATTACCA+GGG | + | chr4_4:39457727-39457746 | None:intergenic | 40.0% | |
| TGAGGATGAATCAGATTACC+AGG | + | chr4_4:39457728-39457747 | None:intergenic | 40.0% | |
| GGTAATCTGATTCATCCTCA+TGG | - | chr4_4:39457728-39457747 | Msa0680450:CDS | 40.0% | |
| AACTGATGGCACCAAATATC+AGG | + | chr4_4:39458261-39458280 | None:intergenic | 40.0% | |
| CACAGTTTGGAAGAGCTTTA+CGG | - | chr4_4:39458527-39458546 | Msa0680450:CDS | 40.0% | |
| ACAGTTTGGAAGAGCTTTAC+GGG | - | chr4_4:39458528-39458547 | Msa0680450:CDS | 40.0% | |
| AGAGGGTAGGTTGTTAGAAT+TGG | - | chr4_4:39458570-39458589 | Msa0680450:CDS | 40.0% | |
| GGTTGTTAGAATTGGAGATC+AGG | - | chr4_4:39458578-39458597 | Msa0680450:CDS | 40.0% | |
| GACCACTCCAAAGTGTAATT+TGG | - | chr4_4:39458684-39458703 | Msa0680450:five_prime_UTR | 40.0% | |
| AGAAGGAGAATGAGGTGATG+GGG | + | chr4_4:39453506-39453525 | None:intergenic | 45.0% | |
| GAGAAGGAGAATGAGGTGAT+GGG | + | chr4_4:39453507-39453526 | None:intergenic | 45.0% | |
| AGATGAGGAGAAGGAGAATG+AGG | + | chr4_4:39453514-39453533 | None:intergenic | 45.0% | |
| GAATGGTGAAGATGAGGAGA+AGG | + | chr4_4:39453523-39453542 | None:intergenic | 45.0% | |
| GTTGACCTGGGATTGTTGAA+GGG | + | chr4_4:39453632-39453651 | None:intergenic | 45.0% | |
| TGTTGACCTGGGATTGTTGA+AGG | + | chr4_4:39453633-39453652 | None:intergenic | 45.0% | |
| GGTGAAGAGAATTGTTGACC+TGG | + | chr4_4:39453645-39453664 | None:intergenic | 45.0% | |
| ! | AACTGACCTGGTTTGCAGAA+TGG | + | chr4_4:39453771-39453790 | None:intergenic | 45.0% |
| TGAAGCACAGACACATACAC+CGG | - | chr4_4:39453838-39453857 | Msa0680450:CDS | 45.0% | |
| !!! | ACCGGATACGACACTGATTT+TGG | - | chr4_4:39453856-39453875 | Msa0680450:CDS | 45.0% |
| !! | TTCCATTTTGGGGGTTCGTT+GGG | - | chr4_4:39454257-39454276 | Msa0680450:intron | 45.0% |
| CGCAAATGAAGAAGATAGGG+AGG | - | chr4_4:39454754-39454773 | Msa0680450:intron | 45.0% | |
| ! | AAGAAGATAGGGAGGTTGGT+TGG | - | chr4_4:39454762-39454781 | Msa0680450:CDS | 45.0% |
| GTTGGTTGGAAGTCAATCCA+TGG | - | chr4_4:39454776-39454795 | Msa0680450:CDS | 45.0% | |
| GAGGCTTGAATACATCACCA+TGG | + | chr4_4:39454796-39454815 | None:intergenic | 45.0% | |
| GCAAAAAATAAGGACGGGTG+CGG | + | chr4_4:39454821-39454840 | None:intergenic | 45.0% | |
| ACAAGATAAGAGTGGGTGGT+AGG | - | chr4_4:39455176-39455195 | Msa0680450:CDS | 45.0% | |
| TTATCATTGCCCCCTAGACA+AGG | + | chr4_4:39455853-39455872 | None:intergenic | 45.0% | |
| ! | GTTTTTCTCATGTCCCTTGG+GGG | + | chr4_4:39455909-39455928 | None:intergenic | 45.0% |
| ATAGGAGGATACAAGGACTG+AGG | - | chr4_4:39456032-39456051 | Msa0680450:intron | 45.0% | |
| TAGGAGGATACAAGGACTGA+GGG | - | chr4_4:39456033-39456052 | Msa0680450:intron | 45.0% | |
| AGCAGTGACTCTGTTGTAGA+AGG | - | chr4_4:39456089-39456108 | Msa0680450:intron | 45.0% | |
| GCAGTGACTCTGTTGTAGAA+GGG | - | chr4_4:39456090-39456109 | Msa0680450:intron | 45.0% | |
| CAGTGACTCTGTTGTAGAAG+GGG | - | chr4_4:39456091-39456110 | Msa0680450:intron | 45.0% | |
| GTTGTAGAAGGGGAAATCCT+TGG | - | chr4_4:39456101-39456120 | Msa0680450:intron | 45.0% | |
| ! | GAATTGGGCTAGATGTACCT+TGG | + | chr4_4:39456201-39456220 | None:intergenic | 45.0% |
| !! | AAGTGCTGTGGAAAAGTGCT+GGG | - | chr4_4:39456240-39456259 | Msa0680450:intron | 45.0% |
| !!! | GTGGAAAAGTGCTGGGTTTT+TGG | - | chr4_4:39456247-39456266 | Msa0680450:intron | 45.0% |
| ! | AGCAGAAAAGTGCAGATCGA+AGG | - | chr4_4:39456277-39456296 | Msa0680450:intron | 45.0% |
| ! | GCAGAAAAGTGCAGATCGAA+GGG | - | chr4_4:39456278-39456297 | Msa0680450:intron | 45.0% |
| ! | CAGAAAAGTGCAGATCGAAG+GGG | - | chr4_4:39456279-39456298 | Msa0680450:intron | 45.0% |
| ! | AGAAAAGTGCAGATCGAAGG+GGG | - | chr4_4:39456280-39456299 | Msa0680450:intron | 45.0% |
| ! | TAGAGCAGGTGGTTAGTTAC+AGG | - | chr4_4:39456394-39456413 | Msa0680450:intron | 45.0% |
| AGGATACAAGGATAGAGGGA+AGG | - | chr4_4:39456435-39456454 | Msa0680450:intron | 45.0% | |
| GTTGTAGAGGAGGAAACTCT+TGG | - | chr4_4:39456501-39456520 | Msa0680450:intron | 45.0% | |
| TGTAGAGGAGGAAACTCTTG+GGG | - | chr4_4:39456503-39456522 | Msa0680450:intron | 45.0% | |
| !! | AGAGGGTACCGATAATTGCT+AGG | + | chr4_4:39456702-39456721 | None:intergenic | 45.0% |
| ACCCTCTATCCATACAGTCA+TGG | - | chr4_4:39456715-39456734 | Msa0680450:intron | 45.0% | |
| CACCATGACTGTATGGATAG+AGG | + | chr4_4:39456720-39456739 | None:intergenic | 45.0% | |
| CTCTATCCATACAGTCATGG+TGG | - | chr4_4:39456718-39456737 | Msa0680450:intron | 45.0% | |
| GAATAGAAGGACAAGCCAAC+TGG | + | chr4_4:39456749-39456768 | None:intergenic | 45.0% | |
| TACTCAACAGCATCCTTCCA+TGG | - | chr4_4:39456793-39456812 | Msa0680450:intron | 45.0% | |
| CATTCTCAGCAAATTGGCCA+TGG | + | chr4_4:39456813-39456832 | None:intergenic | 45.0% | |
| !! | CATGGCCAATTTGCTGAGAA+TGG | - | chr4_4:39456811-39456830 | Msa0680450:intron | 45.0% |
| !! | GCCAATTTGCTGAGAATGGA+TGG | - | chr4_4:39456815-39456834 | Msa0680450:intron | 45.0% |
| CCCATCCATTCTCAGCAAAT+TGG | + | chr4_4:39456819-39456838 | None:intergenic | 45.0% | |
| TCTGTCTTGACTATGACTCC+AGG | - | chr4_4:39456908-39456927 | Msa0680450:intron | 45.0% | |
| CTAGACTAACACTCTTCTCC+TGG | + | chr4_4:39456929-39456948 | None:intergenic | 45.0% | |
| !! | GAGAAGAGTGTTAGTCTAGC+TGG | - | chr4_4:39456930-39456949 | Msa0680450:intron | 45.0% |
| ATATCTTACAGGGTCACAGC+TGG | - | chr4_4:39457008-39457027 | Msa0680450:intron | 45.0% | |
| CGATCCCATTACTTGCATTC+GGG | - | chr4_4:39457081-39457100 | Msa0680450:intron | 45.0% | |
| GATCCCATTACTTGCATTCG+GGG | - | chr4_4:39457082-39457101 | Msa0680450:intron | 45.0% | |
| ATCCCATTACTTGCATTCGG+GGG | - | chr4_4:39457083-39457102 | Msa0680450:intron | 45.0% | |
| TCGGGGGAGTAATTGGATAT+CGG | - | chr4_4:39457099-39457118 | Msa0680450:intron | 45.0% | |
| TCGGTTTAGGTCCAAGTTTC+AGG | - | chr4_4:39457118-39457137 | Msa0680450:intron | 45.0% | |
| CGGATATCTCTTTGTACCCA+AGG | + | chr4_4:39457147-39457166 | None:intergenic | 45.0% | |
| TTCAACAGCTTCCTTGGTAC+AGG | - | chr4_4:39457174-39457193 | Msa0680450:intron | 45.0% | |
| AATGGTGTTCTCCTGTACCA+AGG | + | chr4_4:39457188-39457207 | None:intergenic | 45.0% | |
| TAGCGTACACCTGGTGTAAT+TGG | + | chr4_4:39457256-39457275 | None:intergenic | 45.0% | |
| TACTTCTCCTGAGATCAGGA+GGG | + | chr4_4:39457702-39457721 | None:intergenic | 45.0% | |
| TTACTTCTCCTGAGATCAGG+AGG | + | chr4_4:39457703-39457722 | None:intergenic | 45.0% | |
| GAAAAGAGAACACAGTGCAG+AGG | + | chr4_4:39457944-39457963 | None:intergenic | 45.0% | |
| CGCACTGTAGCCAATAAAGA+AGG | + | chr4_4:39458218-39458237 | None:intergenic | 45.0% | |
| AAATCCATGGCTGCACAGTT+TGG | - | chr4_4:39458514-39458533 | Msa0680450:intron | 45.0% | |
| GAAGAGCTTTACGGGAAGAA+AGG | - | chr4_4:39458536-39458555 | Msa0680450:CDS | 45.0% | |
| GGAGTGGAATTATAGAGGGT+AGG | - | chr4_4:39458557-39458576 | Msa0680450:CDS | 45.0% | |
| GGTGAATTAATTAAGCCCCC+TGG | - | chr4_4:39458599-39458618 | Msa0680450:CDS | 45.0% | |
| CAACCTCATAAACAACCAGG+GGG | + | chr4_4:39458617-39458636 | None:intergenic | 45.0% | |
| GCAACCTCATAAACAACCAG+GGG | + | chr4_4:39458618-39458637 | None:intergenic | 45.0% | |
| GGCAACCTCATAAACAACCA+GGG | + | chr4_4:39458619-39458638 | None:intergenic | 45.0% | |
| TGGCAACCTCATAAACAACC+AGG | + | chr4_4:39458620-39458639 | None:intergenic | 45.0% | |
| GGTCATTAGACACACGATTG+AGG | + | chr4_4:39458668-39458687 | None:intergenic | 45.0% | |
| GGAGAAGGAGAATGAGGTGA+TGG | + | chr4_4:39453508-39453527 | None:intergenic | 50.0% | |
| TAGGTCCCTTCAACAATCCC+AGG | - | chr4_4:39453624-39453643 | Msa0680450:three_prime_UTR | 50.0% | |
| ATGTGTCACATGTCGGACAC+CGG | - | chr4_4:39453917-39453936 | Msa0680450:CDS | 50.0% | |
| !! | CTTCCATTTTGGGGGTTCGT+TGG | - | chr4_4:39454256-39454275 | Msa0680450:intron | 50.0% |
| TTCCCAACGAACCCCCAAAA+TGG | + | chr4_4:39454262-39454281 | None:intergenic | 50.0% | |
| ! | AGTTTGATTCATGGTGGGGG+AGG | - | chr4_4:39454295-39454314 | Msa0680450:intron | 50.0% |
| AAAAATAAGGACGGGTGCGG+AGG | + | chr4_4:39454818-39454837 | None:intergenic | 50.0% | |
| GACAAGGACGACACGCAATT+GGG | + | chr4_4:39455837-39455856 | None:intergenic | 50.0% | |
| AGACAAGGACGACACGCAAT+TGG | + | chr4_4:39455838-39455857 | None:intergenic | 50.0% | |
| ATTGCGTGTCGTCCTTGTCT+AGG | - | chr4_4:39455838-39455857 | Msa0680450:intron | 50.0% | |
| TTGCGTGTCGTCCTTGTCTA+GGG | - | chr4_4:39455839-39455858 | Msa0680450:intron | 50.0% | |
| ! | TTGGTTGGTTAGTCGGTCAG+AGG | - | chr4_4:39455996-39456015 | Msa0680450:intron | 50.0% |
| GAAGGGGAAATCCTTGGAGT+TGG | - | chr4_4:39456107-39456126 | Msa0680450:intron | 50.0% | |
| !! | TCCTTGGAGTTGGTATCTGC+TGG | - | chr4_4:39456117-39456136 | Msa0680450:intron | 50.0% |
| TCCAGCAGATACCAACTCCA+AGG | + | chr4_4:39456121-39456140 | None:intergenic | 50.0% | |
| ATCTGCTGGAGTCGAGAACA+AGG | - | chr4_4:39456131-39456150 | Msa0680450:intron | 50.0% | |
| TCTGCTGGAGTCGAGAACAA+GGG | - | chr4_4:39456132-39456151 | Msa0680450:intron | 50.0% | |
| GGGTTAGGCCCAATGAACTT+TGG | + | chr4_4:39456180-39456199 | None:intergenic | 50.0% | |
| AGTTCATTGGGCCTAACCCA+AGG | - | chr4_4:39456181-39456200 | Msa0680450:intron | 50.0% | |
| GGCTAGATGTACCTTGGGTT+AGG | + | chr4_4:39456195-39456214 | None:intergenic | 50.0% | |
| !! | GGGTTTTTGCTCAAGTGCTG+TGG | - | chr4_4:39456228-39456247 | Msa0680450:intron | 50.0% |
| ! | CAAGTGCTGTGGAAAAGTGC+TGG | - | chr4_4:39456239-39456258 | Msa0680450:intron | 50.0% |
| GCAGTGTGACTCTGTTGTAG+AGG | - | chr4_4:39456488-39456507 | Msa0680450:intron | 50.0% | |
| GTGTGACTCTGTTGTAGAGG+AGG | - | chr4_4:39456491-39456510 | Msa0680450:intron | 50.0% | |
| GAGAGTCCACCATGACTGTA+TGG | + | chr4_4:39456727-39456746 | None:intergenic | 50.0% | |
| CTCAGCAAATTGGCCATGGA+AGG | + | chr4_4:39456809-39456828 | None:intergenic | 50.0% | |
| CTCCCCCGAATGCAAGTAAT+GGG | + | chr4_4:39457088-39457107 | None:intergenic | 50.0% | |
| ACTCCCCCGAATGCAAGTAA+TGG | + | chr4_4:39457089-39457108 | None:intergenic | 50.0% | |
| CTTGCATTCGGGGGAGTAAT+TGG | - | chr4_4:39457092-39457111 | Msa0680450:intron | 50.0% | |
| ! | TCCAAGTTTCAGGTCCCCTT+GGG | - | chr4_4:39457128-39457147 | Msa0680450:intron | 50.0% |
| ! | ACCAGGTGTACGCTAGTTTG+TGG | - | chr4_4:39457261-39457280 | Msa0680450:intron | 50.0% |
| ! | CCAGGTGTACGCTAGTTTGT+GGG | - | chr4_4:39457262-39457281 | Msa0680450:intron | 50.0% |
| ! | CAGGTGTACGCTAGTTTGTG+GGG | - | chr4_4:39457263-39457282 | Msa0680450:intron | 50.0% |
| CTGTGGAAGACCATGAATGG+TGG | - | chr4_4:39457387-39457406 | Msa0680450:CDS | 50.0% | |
| TGGAAGACCATGAATGGTGG+TGG | - | chr4_4:39457390-39457409 | Msa0680450:CDS | 50.0% | |
| !! | AAGACCATGAATGGTGGTGG+AGG | - | chr4_4:39457393-39457412 | Msa0680450:CDS | 50.0% |
| CATACCTCCACCACCATTCA+TGG | + | chr4_4:39457400-39457419 | None:intergenic | 50.0% | |
| GTCTTAACCCTCCTGATCTC+AGG | - | chr4_4:39457692-39457711 | Msa0680450:CDS | 50.0% | |
| GGCTTACTTCTCCTGAGATC+AGG | + | chr4_4:39457706-39457725 | None:intergenic | 50.0% | |
| ATCTCAGGAGAAGTAAGCCC+TGG | - | chr4_4:39457707-39457726 | Msa0680450:CDS | 50.0% | |
| ACACAGTGCAGAGGTCAACA+AGG | + | chr4_4:39457935-39457954 | None:intergenic | 50.0% | |
| TCTTCCAAACTGTGCAGCCA+TGG | + | chr4_4:39458521-39458540 | None:intergenic | 50.0% | |
| GCTTTACGGGAAGAAAGGAG+TGG | - | chr4_4:39458541-39458560 | Msa0680450:CDS | 50.0% | |
| AAGCCCCCTGGTTGTTTATG+AGG | - | chr4_4:39458611-39458630 | Msa0680450:CDS | 50.0% | |
| CAACTTCTGTACTGCCTGCC+TGG | - | chr4_4:39455550-39455569 | Msa0680450:intron | 55.0% | |
| CCATGGCAAAGATACCAGGC+AGG | + | chr4_4:39455567-39455586 | None:intergenic | 55.0% | |
| CCTGCCTGGTATCTTTGCCA+TGG | - | chr4_4:39455564-39455583 | Msa0680450:intron | 55.0% | |
| TGCGTGTCGTCCTTGTCTAG+GGG | - | chr4_4:39455840-39455859 | Msa0680450:intron | 55.0% | |
| !! | GGATCGAGGGAAGGCATTGA+AGG | - | chr4_4:39456321-39456340 | Msa0680450:intron | 55.0% |
| GAGGAGGAAACTCTTGGGGT+TGG | - | chr4_4:39456507-39456526 | Msa0680450:intron | 55.0% | |
| GAGGAAACTCTTGGGGTTGG+AGG | - | chr4_4:39456510-39456529 | Msa0680450:intron | 55.0% | |
| !! | GTCATGGTGGACTCTCCAGT+TGG | - | chr4_4:39456731-39456750 | Msa0680450:intron | 55.0% |
| GTCACAGCTGGACTCCCATT+GGG | - | chr4_4:39457020-39457039 | Msa0680450:intron | 55.0% | |
| ! | GTCCAAGTTTCAGGTCCCCT+TGG | - | chr4_4:39457127-39457146 | Msa0680450:intron | 55.0% |
| ACCCAAGGGGACCTGAAACT+TGG | + | chr4_4:39457132-39457151 | None:intergenic | 55.0% | |
| CCCACAAACTAGCGTACACC+TGG | + | chr4_4:39457265-39457284 | None:intergenic | 55.0% | |
| AGTGTCGCAGCCAAAATGCC+AGG | + | chr4_4:39457308-39457327 | None:intergenic | 55.0% | |
| GTGTGCAGATCTGTGCTGTG+TGG | - | chr4_4:39458112-39458131 | Msa0680450:intron | 55.0% | |
| TGCAGATCTGTGCTGTGTGG+TGG | - | chr4_4:39458115-39458134 | Msa0680450:intron | 55.0% | |
| AATAAGGACGGGTGCGGAGG+AGG | + | chr4_4:39454815-39454834 | None:intergenic | 60.0% | |
| GCGTGTCGTCCTTGTCTAGG+GGG | - | chr4_4:39455841-39455860 | Msa0680450:intron | 60.0% | |
| GGTCACAGCTGGACTCCCAT+TGG | - | chr4_4:39457019-39457038 | Msa0680450:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 39453313 | 39458859 | 39453313 | ID=Msa0680450;Name=Msa0680450 |
| chr4_4 | mRNA | 39453313 | 39458859 | 39453313 | ID=Msa0680450-mRNA-1;Parent=Msa0680450;Name=Msa0680450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=161|0.83|1|1|0.83|0.71|7|523|575 |
| chr4_4 | exon | 39453313 | 39454052 | 39453313 | ID=Msa0680450-mRNA-1:exon:9320;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39454758 | 39455242 | 39454758 | ID=Msa0680450-mRNA-1:exon:9319;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39455335 | 39455491 | 39455335 | ID=Msa0680450-mRNA-1:exon:9318;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39457299 | 39457427 | 39457299 | ID=Msa0680450-mRNA-1:exon:9317;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39457525 | 39458112 | 39457525 | ID=Msa0680450-mRNA-1:exon:9316;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39458527 | 39458714 | 39458527 | ID=Msa0680450-mRNA-1:exon:9315;Parent=Msa0680450-mRNA-1 |
| chr4_4 | exon | 39458735 | 39458859 | 39458735 | ID=Msa0680450-mRNA-1:exon:9314;Parent=Msa0680450-mRNA-1 |
| chr4_4 | five_prime_UTR | 39458735 | 39458859 | 39458735 | ID=Msa0680450-mRNA-1:five_prime_utr;Parent=Msa0680450-mRNA-1 |
| chr4_4 | five_prime_UTR | 39458679 | 39458714 | 39458679 | ID=Msa0680450-mRNA-1:five_prime_utr;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39458527 | 39458678 | 39458527 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39457525 | 39458112 | 39457525 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39457299 | 39457427 | 39457299 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39455335 | 39455491 | 39455335 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39454758 | 39455242 | 39454758 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | CDS | 39453836 | 39454052 | 39453836 | ID=Msa0680450-mRNA-1:cds;Parent=Msa0680450-mRNA-1 |
| chr4_4 | three_prime_UTR | 39453313 | 39453835 | 39453313 | ID=Msa0680450-mRNA-1:three_prime_utr;Parent=Msa0680450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
