AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0963060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963060 MtrunA17_Chr6g0483361 82.724 492 54 2 1 473 1 480 0.0 786
Msa0963060 MtrunA17_Chr6g0483381 80.972 494 61 3 1 473 1 482 0.0 777
Msa0963060 MtrunA17_Chr6g0477961 75.506 494 88 3 1 473 1 482 0.0 720
Msa0963060 MtrunA17_Chr6g0483351 81.390 446 31 3 68 473 1 434 0.0 680
Msa0963060 MtrunA17_Chr1g0208791 53.239 494 189 5 3 471 15 491 0.0 517
Msa0963060 MtrunA17_Chr6g0483341 54.852 474 180 4 20 473 36 495 9.21e-180 512
Msa0963060 MtrunA17_Chr6g0483331 56.329 474 173 4 20 473 7 466 3.03e-178 507
Msa0963060 MtrunA17_Chr8g0392601 56.290 469 172 3 16 465 3 457 6.74e-178 507
Msa0963060 MtrunA17_Chr1g0208821 45.963 483 220 4 9 464 17 485 2.25e-143 420
Msa0963060 MtrunA17_Chr6g0449061 45.607 478 222 6 5 462 14 473 2.25e-140 412
Msa0963060 MtrunA17_Chr1g0208881 47.712 459 207 3 25 464 25 469 6.42e-134 395
Msa0963060 MtrunA17_Chr7g0251331 42.710 487 243 4 9 473 7 479 1.29e-131 389
Msa0963060 MtrunA17_Chr1g0208891 44.025 477 229 4 13 465 7 469 1.06e-127 379
Msa0963060 MtrunA17_Chr6g0483161 51.475 373 148 3 82 454 20 359 4.41e-126 371
Msa0963060 MtrunA17_Chr7g0251321 44.032 377 178 3 86 462 22 365 8.98e-104 314
Msa0963060 MtrunA17_Chr2g0322671 37.991 458 251 3 26 464 53 496 9.03e-103 316
Msa0963060 MtrunA17_Chr2g0317131 37.323 493 258 7 4 461 11 487 3.21e-102 314
Msa0963060 MtrunA17_Chr2g0317151 37.872 470 258 4 4 453 11 466 1.95e-101 311
Msa0963060 MtrunA17_Chr4g0024501 37.605 476 261 5 19 472 56 517 5.64e-100 309
Msa0963060 MtrunA17_Chr2g0317161 35.113 487 273 5 14 471 13 485 2.33e-94 294
Msa0963060 MtrunA17_Chr2g0288281 40.155 386 214 3 82 464 18 389 2.49e-92 285
Msa0963060 MtrunA17_Chr2g0317171 34.623 491 278 5 10 471 15 491 7.45e-91 285
Msa0963060 MtrunA17_Chr5g0428251 32.645 484 290 4 10 471 37 506 6.88e-83 266
Msa0963060 MtrunA17_Chr2g0317221 36.962 395 228 4 82 471 27 405 1.05e-81 259
Msa0963060 MtrunA17_Chr5g0412771 34.341 463 270 4 21 464 52 499 1.46e-80 259
Msa0963060 MtrunA17_Chr5g0442331 34.156 486 283 5 9 471 26 497 2.56e-80 258
Msa0963060 MtrunA17_Chr1g0203791 31.393 481 285 6 6 458 39 502 1.08e-79 257
Msa0963060 MtrunA17_Chr5g0397991 32.292 480 284 6 5 460 43 505 1.17e-78 254
Msa0963060 MtrunA17_Chr8g0368001 33.909 463 268 5 21 462 46 491 3.38e-78 253
Msa0963060 MtrunA17_Chr3g0140931 33.124 477 276 6 10 460 32 491 3.95e-77 251
Msa0963060 MtrunA17_Chr6g0483264 59.314 204 83 0 259 462 1 204 2.14e-76 238
Msa0963060 MtrunA17_Chr1g0154441 36.911 382 226 3 83 464 19 385 1.24e-74 239
Msa0963060 MtrunA17_Chr7g0254521 32.409 469 283 5 21 470 27 480 1.65e-73 239
Msa0963060 MtrunA17_Chr6g0473701 31.263 483 290 7 1 458 101 566 2.99e-73 242
Msa0963060 MtrunA17_Chr1g0202761 32.976 467 277 6 18 464 35 485 6.60e-73 238
Msa0963060 MtrunA17_Chr5g0412541 32.427 478 281 6 17 467 28 490 1.48e-72 237
Msa0963060 MtrunA17_Chr8g0389801 32.272 471 283 5 7 458 6 459 6.28e-71 232
Msa0963060 MtrunA17_Chr6g0467321 31.435 474 265 7 22 458 39 489 1.70e-70 233
Msa0963060 MtrunA17_Chr7g0254511 29.328 491 308 8 2 470 5 478 3.60e-69 228
Msa0963060 MtrunA17_Chr7g0254531 34.653 404 238 6 68 464 1 385 1.35e-66 219
Msa0963060 MtrunA17_Chr6g0468531 30.943 488 294 5 3 463 1 472 1.54e-64 216
Msa0963060 MtrunA17_Chr6g0468521 29.713 488 299 6 3 463 1 471 3.38e-64 215
Msa0963060 MtrunA17_Chr4g0013031 29.175 473 300 7 22 473 63 521 1.05e-63 215
Msa0963060 MtrunA17_Chr5g0412571 36.220 381 221 6 82 458 57 419 2.50e-63 211
Msa0963060 MtrunA17_Chr3g0132531 30.417 480 299 5 10 469 31 495 4.80e-63 213
Msa0963060 MtrunA17_Chr7g0254501 33.121 314 194 3 150 463 2 299 2.78e-55 187
Msa0963060 MtrunA17_Chr2g0295631 27.004 474 309 5 18 462 13 478 2.61e-54 189
Msa0963060 MtrunA17_Chr6g0468511 29.352 494 305 6 3 469 1 477 4.17e-54 188
Msa0963060 MtrunA17_Chr6g0483241 55.215 163 71 1 82 244 20 180 1.26e-52 175
Msa0963060 MtrunA17_Chr7g0248051 30.303 462 286 6 15 456 59 504 4.80e-52 183
Msa0963060 MtrunA17_Chr6g0460541 31.888 392 245 6 82 470 22 394 7.51e-52 180
Msa0963060 MtrunA17_Chr6g0483261 56.051 157 69 0 306 462 6 162 4.97e-51 171
Msa0963060 MtrunA17_Chr6g0483221 53.020 149 70 0 306 454 6 154 1.50e-50 169
Msa0963060 MtrunA17_Chr6g0487091 28.662 471 251 9 2 465 8 400 1.66e-47 169
Msa0963060 MtrunA17_Chr5g0440661 29.076 368 183 5 87 453 23 313 1.12e-41 150
Msa0963060 MtrunA17_Chr3g0132541 25.577 477 266 7 13 470 29 435 6.59e-40 149
Msa0963060 MtrunA17_Chr8g0364751 42.308 182 103 1 294 473 5 186 4.95e-38 137
Msa0963060 MtrunA17_Chr8g0364761 33.333 288 158 4 21 288 49 322 1.82e-36 137
Msa0963060 MtrunA17_Chr6g0460521 36.098 205 131 0 259 463 4 208 4.99e-34 127
Msa0963060 MtrunA17_Chr5g0398571 32.394 213 144 0 257 469 84 296 3.55e-28 114
Msa0963060 MtrunA17_Chr1g0208901 35.897 156 69 2 12 167 4 128 5.62e-20 85.9
Msa0963060 MtrunA17_Chr5g0442311 32.911 158 104 1 87 244 23 178 1.73e-19 86.3
Msa0963060 MtrunA17_Chr6g0483281 62.319 69 24 1 176 244 5 71 1.41e-18 80.5
Msa0963060 MtrunA17_Chr6g0483251 58.462 65 27 0 20 84 5 69 2.01e-17 76.6
Msa0963060 MtrunA17_Chr6g0483291 55.556 63 27 1 20 81 5 67 4.31e-15 70.1
Msa0963060 MtrunA17_Chr6g0460531 26.172 256 163 5 10 244 9 259 1.37e-14 73.9
Msa0963060 MtrunA17_Chr6g0483271 63.830 47 17 0 267 313 1 47 3.48e-12 61.2
Msa0963060 MtrunA17_Chr6g0483231 57.447 47 20 0 267 313 1 47 1.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0963060 AT5G52450.1 61.864 472 147 3 19 471 19 476 0.0 575
Msa0963060 AT2G34360.1 58.664 479 154 6 6 465 12 465 0.0 552
Msa0963060 AT1G73700.1 57.202 486 171 4 6 472 8 475 0.0 535
Msa0963060 AT1G71140.1 44.776 469 224 4 15 462 13 467 8.48e-135 398
Msa0963060 AT1G15150.1 39.673 489 259 4 4 470 9 483 1.65e-126 377
Msa0963060 AT1G15160.1 40.164 488 256 4 5 470 10 483 3.59e-126 376
Msa0963060 AT1G15170.1 42.029 483 245 4 7 468 13 481 1.74e-125 374
Msa0963060 AT2G04100.1 42.333 463 232 6 20 462 24 471 3.04e-123 368
Msa0963060 AT1G66760.2 40.580 483 252 5 2 464 4 471 1.68e-122 366
Msa0963060 AT2G04090.1 41.866 461 233 6 22 462 26 471 1.82e-120 361
Msa0963060 AT2G04100.2 42.198 455 228 6 20 454 24 463 7.02e-120 359
Msa0963060 AT1G15180.1 42.650 483 242 4 7 468 14 482 1.49e-119 358
Msa0963060 AT1G66760.1 40.592 473 246 5 2 454 4 461 1.87e-119 358
Msa0963060 AT2G04070.1 42.391 460 232 3 22 462 23 468 2.38e-118 355
Msa0963060 AT2G04080.1 40.977 471 242 5 19 470 20 473 6.37e-117 352
Msa0963060 AT2G04040.1 42.184 467 234 5 23 470 24 473 1.50e-116 351
Msa0963060 AT2G04050.1 40.664 482 250 4 3 462 1 468 3.09e-115 347
Msa0963060 AT1G15170.2 44.947 376 193 2 93 468 1 362 9.98e-114 339
Msa0963060 AT2G04080.2 40.700 457 238 4 19 456 20 462 2.81e-113 342
Msa0963060 AT1G15150.2 42.257 381 203 3 93 470 1 367 5.15e-109 328
Msa0963060 AT1G66780.1 40.225 445 233 3 44 469 53 483 3.09e-108 330
Msa0963060 AT1G64820.1 38.530 449 243 3 33 462 36 470 2.49e-104 320
Msa0963060 AT3G23560.1 37.866 478 254 4 5 453 8 471 4.45e-103 316
Msa0963060 AT3G23550.1 38.616 448 242 3 25 453 30 463 3.04e-101 311
Msa0963060 AT1G61890.1 34.608 497 277 6 2 464 8 490 1.04e-99 308
Msa0963060 AT1G66760.3 45.058 344 175 2 111 454 4 333 5.43e-97 296
Msa0963060 AT1G61890.2 34.702 487 270 6 2 454 8 480 6.95e-97 301
Msa0963060 AT3G21690.1 36.207 464 263 3 20 464 46 495 1.85e-96 300
Msa0963060 AT1G11670.1 34.120 466 274 3 26 472 50 501 3.27e-96 299
Msa0963060 AT1G66760.4 39.259 405 211 5 2 386 4 393 1.27e-91 284
Msa0963060 AT4G21910.2 36.623 456 257 4 26 463 57 498 5.43e-91 286
Msa0963060 AT4G21910.4 36.623 456 257 4 26 463 57 498 5.43e-91 286
Msa0963060 AT4G21910.3 36.184 456 259 4 26 463 55 496 2.11e-90 285
Msa0963060 AT4G21910.1 36.184 456 259 4 26 463 55 496 2.11e-90 285
Msa0963060 AT2G34360.2 56.202 258 87 3 6 244 12 262 1.15e-89 280
Msa0963060 AT2G34360.2 62.112 161 61 0 305 465 263 423 4.83e-68 224
Msa0963060 AT3G59030.1 35.400 500 272 7 3 467 14 497 1.74e-89 282
Msa0963060 AT4G21903.1 36.425 442 249 4 40 463 67 494 1.53e-87 277
Msa0963060 AT4G21903.2 35.808 458 252 6 40 471 67 508 7.18e-85 270
Msa0963060 AT4G21903.3 37.436 390 230 2 82 471 18 393 1.33e-84 266
Msa0963060 AT1G61890.3 33.843 458 255 6 2 425 8 451 1.47e-83 266
Msa0963060 AT1G15180.2 44.068 295 151 2 93 387 1 281 5.54e-80 254
Msa0963060 AT1G58340.1 34.725 455 264 3 25 460 57 497 3.58e-79 256
Msa0963060 AT3G23560.2 36.983 411 216 4 5 386 8 404 2.86e-78 250
Msa0963060 AT3G26590.1 31.749 463 282 4 21 464 40 487 2.90e-78 253
Msa0963060 AT1G23300.1 33.548 465 271 5 21 464 39 486 4.92e-76 247
Msa0963060 AT1G47530.1 33.056 481 286 6 4 464 13 477 1.00e-75 246
Msa0963060 AT5G38030.1 31.317 463 284 4 21 464 40 487 1.09e-75 246
Msa0963060 AT1G12950.1 32.088 455 274 5 30 464 70 509 4.37e-75 245
Msa0963060 AT2G38510.1 31.590 459 280 7 22 460 2 446 2.13e-73 239
Msa0963060 AT3G26590.2 34.383 381 235 3 84 464 20 385 5.99e-73 236
Msa0963060 AT5G44050.1 32.292 480 279 8 13 464 22 483 1.48e-72 238
Msa0963060 AT4G23030.1 33.824 476 272 7 11 460 14 472 3.23e-71 234
Msa0963060 AT4G00350.1 31.579 456 276 5 29 464 90 529 1.83e-70 233
Msa0963060 AT4G29140.1 31.789 475 284 6 10 458 33 493 2.54e-70 233
Msa0963060 AT1G47530.2 35.340 382 232 3 83 464 19 385 4.24e-69 226
Msa0963060 AT5G65380.1 32.573 482 287 6 3 464 17 480 8.84e-69 228
Msa0963060 AT1G33090.1 31.697 489 292 9 8 470 12 484 2.06e-68 227
Msa0963060 AT5G52050.1 32.000 450 269 5 33 458 42 478 2.71e-68 227
Msa0963060 AT5G10420.1 32.017 481 288 6 14 470 22 487 7.89e-67 223
Msa0963060 AT1G71870.1 31.250 480 291 8 10 458 8 479 9.71e-67 223
Msa0963060 AT1G33100.1 31.070 486 296 8 8 470 12 481 1.39e-66 222
Msa0963060 AT1G33110.1 30.533 488 299 8 8 470 12 484 1.86e-65 219
Msa0963060 AT5G49130.1 29.234 496 314 7 7 471 1 490 2.73e-65 219
Msa0963060 AT5G19700.1 30.185 487 299 5 9 468 16 488 4.23e-64 216
Msa0963060 AT3G59030.2 35.322 419 220 8 3 386 14 416 1.42e-63 212
Msa0963060 AT1G33080.1 30.675 489 297 9 8 470 12 484 3.23e-63 213
Msa0963060 AT1G33080.2 30.962 478 288 9 8 459 12 473 1.11e-61 209
Msa0963060 AT4G25640.1 31.084 489 289 9 9 470 14 481 8.66e-58 199
Msa0963060 AT4G25640.2 31.084 489 289 9 9 470 14 481 1.68e-57 198
Msa0963060 AT5G17700.2 29.375 480 293 11 11 464 17 476 3.06e-55 192
Msa0963060 AT5G17700.1 29.375 480 293 11 11 464 17 476 3.06e-55 192
Msa0963060 AT3G03620.2 30.000 480 289 11 11 463 19 478 1.19e-54 191
Msa0963060 AT3G03620.1 30.000 480 289 11 11 463 19 478 1.19e-54 191
Msa0963060 AT4G22790.1 30.087 462 282 8 21 458 25 469 6.02e-53 186
Msa0963060 AT4G25640.3 30.995 442 257 9 9 423 14 434 2.07e-50 178
Msa0963060 AT1G33110.2 28.889 405 246 9 8 386 12 400 4.36e-40 149
Msa0963060 AT2G04066.1 47.541 122 64 0 341 462 42 163 5.24e-35 129
Msa0963060 AT5G17700.3 27.363 402 246 11 11 386 17 398 2.26e-32 128

Find 103 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATACTAGTTCGTAATTTA+TGG 0.139599 6_3:+87287520 Msa0963060:CDS
CTATTCCCCTCGCGATTATT+TGG 0.190931 6_3:+87286375 Msa0963060:CDS
TGTTACTGGTTTCAGTTTAT+TGG 0.197279 6_3:+87284410 Msa0963060:CDS
GAATTAATGGTTCTTCTTTC+GGG 0.199172 6_3:+87286991 Msa0963060:CDS
TGAATTAATGGTTCTTCTTT+CGG 0.201119 6_3:+87286990 Msa0963060:CDS
GGAATGCAAGCTGTTCTTTC+AGG 0.202710 6_3:+87287627 Msa0963060:CDS
ATGGCAAGCTTCAGGAAAAT+TGG 0.241777 6_3:-87286770 None:intergenic
CTGTAGATATTTCATGATCT+TGG 0.274075 6_3:-87286430 None:intergenic
GATGTTTCCAACTTTGGATT+TGG 0.287173 6_3:-87287021 None:intergenic
AAGACACAGTTATGGTTATC+AGG 0.292681 6_3:+87284270 Msa0963060:CDS
TATTCCCCTCGCGATTATTT+GGG 0.313645 6_3:+87286376 Msa0963060:CDS
AATGTGGTCATTTGAATTAA+TGG 0.315453 6_3:+87286978 Msa0963060:CDS
GAGAATGAAGAGACATGTTT+TGG 0.315699 6_3:-87284182 None:intergenic
GGAAGAAGAAAGAAGAAAAT+TGG 0.317280 6_3:+87284236 Msa0963060:CDS
CTTATGTTTGTTGGTCATCT+TGG 0.328499 6_3:+87284342 Msa0963060:CDS
CTTGGATCATATTATTTAGT+TGG 0.330742 6_3:+87288016 Msa0963060:CDS
AGCACAGATGTTTCCAACTT+TGG 0.335573 6_3:-87287027 None:intergenic
TCAGTTACACTCTTAAATTA+TGG 0.341516 6_3:+87284303 Msa0963060:CDS
TCTTCCTCTATGTTGGATAA+TGG 0.343949 6_3:+87286589 Msa0963060:CDS
AAACATCTGTGCTTTCTATC+TGG 0.352029 6_3:+87287037 Msa0963060:CDS
CTGAAGGAATGGCAAGCTTC+AGG 0.354381 6_3:-87286778 None:intergenic
ATTATTTCACTTATGTTTGT+TGG 0.354686 6_3:+87284333 Msa0963060:CDS
TCATCCACAGGCTGCGCGTT+TGG 0.355776 6_3:+87287440 Msa0963060:CDS
TGGCAGCTATGCAAAGTTAA+TGG 0.367835 6_3:+87286457 Msa0963060:CDS
GATACTAGTTCGTAATTTAT+GGG 0.370982 6_3:+87287521 Msa0963060:CDS
ATCTTTCAATGCACTGTTGA+AGG 0.371429 6_3:+87288481 Msa0963060:three_prime_UTR
TTTGTTTCTTCAACAATCAA+TGG 0.392959 6_3:-87284204 None:intergenic
TGCCATTCCTTCAGCTGTAA+TGG 0.395491 6_3:+87286787 Msa0963060:CDS
GTAGAAGACCGTAAGCAAAA+AGG 0.395768 6_3:-87286487 None:intergenic
TTGGATCATATTATTTAGTT+GGG 0.395886 6_3:+87288017 Msa0963060:CDS
TTTGACATAGAGTGCGAGTA+TGG 0.397501 6_3:-87286681 None:intergenic
ATGGTATACAAGTCTGGATT+AGG 0.409491 6_3:+87286608 Msa0963060:CDS
CTTGGTGAGTTATCTCTCTC+TGG 0.414750 6_3:+87284360 Msa0963060:CDS
TAAATACAACAGCAGCTGTT+TGG 0.423923 6_3:+87287206 Msa0963060:CDS
GTTCAGTGCAAGTGCTTCCT+TGG 0.430530 6_3:-87286741 None:intergenic
TCCAATGATGTTTAGCTCCT+CGG 0.431966 6_3:+87286550 Msa0963060:CDS
GGATGTGGTTGGCAGAAAAT+TGG 0.435156 6_3:+87287980 Msa0963060:CDS
TACTTCATCTTCCTCTATGT+TGG 0.435862 6_3:+87286582 Msa0963060:CDS
ATAATATAGGGCCTGTGGCT+GGG 0.439811 6_3:+87288161 Msa0963060:intron
TAGCAAATTCAATATCGTAC+TGG 0.441020 6_3:+87286648 Msa0963060:CDS
TAATATAGGGCCTGTGGCTG+GGG 0.444477 6_3:+87288162 Msa0963060:intron
ACCGAGGAGCTAAACATCAT+TGG 0.444954 6_3:-87286551 None:intergenic
ATCTCTCTCTGGTGCTTCCA+TGG 0.446304 6_3:+87284371 Msa0963060:CDS
TGGCAAGCTTCAGGAAAATT+GGG 0.446874 6_3:-87286769 None:intergenic
GCAAAGCAGTACCGCATGTC+AGG 0.449733 6_3:+87286311 Msa0963060:intron
TGGATAATGGTATACAAGTC+TGG 0.467303 6_3:+87286602 Msa0963060:CDS
CTTCGTCATGGTGAGCAGCT+TGG 0.469951 6_3:+87286954 Msa0963060:CDS
AAGTGGGATACGGCAAGAAT+TGG 0.472050 6_3:-87287597 None:intergenic
TCATTACAATACGCACAGAT+TGG 0.479725 6_3:+87288225 Msa0963060:CDS
ATTCGTGTTTCGAATGAACT+TGG 0.485317 6_3:+87287411 Msa0963060:CDS
GCCGTATCCCACTTACTAGA+TGG 0.486822 6_3:+87287606 Msa0963060:CDS
AGAAGCAAAAGAAGTAGCCA+TGG 0.492944 6_3:-87284388 None:intergenic
TCTTCTTCCAAATCCAAAGT+TGG 0.494414 6_3:+87287014 Msa0963060:CDS
GACTAAGATGCTCTCAATAA+CGG 0.495838 6_3:-87287487 None:intergenic
CATGAAATATCTACAGAAGC+TGG 0.501346 6_3:+87286437 Msa0963060:CDS
CTTGCATTCCATCTAGTAAG+TGG 0.503895 6_3:-87287614 None:intergenic
TCGGACTCAGTGGAGCTGTA+AGG 0.506674 6_3:+87287239 Msa0963060:CDS
GCTGTTTGGATGATCCCCTT+CGG 0.512079 6_3:+87287220 Msa0963060:CDS
CATTACAATACGCACAGATT+GGG 0.515621 6_3:+87288226 Msa0963060:CDS
AAAGCGAATACAATGGCTGC+TGG 0.518120 6_3:-87288043 None:intergenic
TTGGCCAAGTAAAATGAGAA+TGG 0.519826 6_3:-87286411 None:intergenic
AACCATTACAGCTGAAGGAA+TGG 0.525701 6_3:-87286789 None:intergenic
TTTCTCAGAGTATTTGGAAG+GGG 0.530317 6_3:+87288454 Msa0963060:three_prime_UTR
CACATATAATCCCCAGCCAC+AGG 0.532483 6_3:-87288172 None:intergenic
AAGAGTGTAACTGATATCAA+TGG 0.542636 6_3:-87284294 None:intergenic
GTACGATATTGAATTTGCTA+TGG 0.543345 6_3:-87286645 None:intergenic
TCCATCTAGTAAGTGGGATA+CGG 0.545689 6_3:-87287607 None:intergenic
ACGCACAGATTGGGAGAAAG+AGG 0.549190 6_3:+87288235 Msa0963060:CDS
GTTTCGAATGAACTTGGTGC+TGG 0.552325 6_3:+87287417 Msa0963060:CDS
AGCAAATTCAATATCGTACT+GGG 0.552376 6_3:+87286649 Msa0963060:CDS
TCAGGTACTGCTAGAGGATG+TGG 0.553165 6_3:+87287965 Msa0963060:intron
TACCAAACCATTACAGCTGA+AGG 0.556607 6_3:-87286794 None:intergenic
AGAAGAAAGAAGAAAATTGG+CGG 0.565170 6_3:+87284239 Msa0963060:CDS
TGTACTACATATTGGCGGGA+AGG 0.571936 6_3:+87288066 Msa0963060:CDS
AAGTCTGGATTAGGTAGCAG+AGG 0.573228 6_3:+87286617 Msa0963060:CDS
ATACTAGTTCGTAATTTATG+GGG 0.582688 6_3:+87287522 Msa0963060:CDS
TACAGCTCCACTGAGTCCGA+AGG 0.583200 6_3:-87287236 None:intergenic
ACTTGGTGCTGGTCATCCAC+AGG 0.587929 6_3:+87287428 Msa0963060:CDS
TATACCATTATCCAACATAG+AGG 0.595522 6_3:-87286593 None:intergenic
AAGAAGTGAAGACACAGTTA+TGG 0.598580 6_3:+87284262 Msa0963060:CDS
TGAAGGAAAATAATATGTGC+TGG 0.601889 6_3:+87288498 Msa0963060:three_prime_UTR
ACAGCTCCACTGAGTCCGAA+GGG 0.602693 6_3:-87287235 None:intergenic
TGAGAGCATCTTAGTCGGAA+CGG 0.605010 6_3:+87287494 Msa0963060:CDS
TATTTATAATATAGGGCCTG+TGG 0.609405 6_3:+87288156 Msa0963060:intron
TGGTGAGCAGCTTGGAAATG+TGG 0.613058 6_3:+87286962 Msa0963060:CDS
TTGCATTCCATCTAGTAAGT+GGG 0.618025 6_3:-87287613 None:intergenic
GTTTGCCCAAATAATCGCGA+GGG 0.618210 6_3:-87286381 None:intergenic
AGACACAGTTATGGTTATCA+GGG 0.618539 6_3:+87284271 Msa0963060:CDS
TATGATTCAGGTACTGCTAG+AGG 0.620194 6_3:+87287959 Msa0963060:intron
ATGATCCCCTTCGGACTCAG+TGG 0.634889 6_3:+87287229 Msa0963060:CDS
GTTATTGAGAGCATCTTAGT+CGG 0.638872 6_3:+87287489 Msa0963060:CDS
ATGAAGTAATGTTGTAACCG+AGG 0.644303 6_3:-87286567 None:intergenic
TGTTTGCCCAAATAATCGCG+AGG 0.649848 6_3:-87286382 None:intergenic
TGAAGAAACAAAACAAAACA+AGG 0.651044 6_3:+87284215 Msa0963060:CDS
GACAAAGCGCTTGAACAACG+AGG 0.670556 6_3:-87288196 None:intergenic
GACGATCATGAGAATGAACA+TGG 0.672131 6_3:-87286351 None:intergenic
GTACTGCTAGAGGATGTGGT+TGG 0.674177 6_3:+87287969 Msa0963060:CDS
TAGTACAAAAGCGAATACAA+TGG 0.675143 6_3:-87288050 None:intergenic
CAGCTCCACTGAGTCCGAAG+GGG 0.677876 6_3:-87287234 None:intergenic
CACCATGACGAAGAAAACAA+AGG 0.684285 6_3:-87286944 None:intergenic
ACAAAGCGCTTGAACAACGA+GGG 0.691240 6_3:-87288195 None:intergenic
TTTGCCCAAATAATCGCGAG+GGG 0.704818 6_3:-87286380 None:intergenic
GCATGTGTATGCCTGACATG+CGG 0.723702 6_3:-87286322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAATATTTATAATATA+GGG + chr6_3:87288149-87288168 Msa0963060:intron 0.0%
!!! ACTAATGTATTTTTTTTTTT+TGG + chr6_3:87284604-87284623 Msa0963060:intron 10.0%
!! ATTATTCAAACTTAAATTTA+TGG + chr6_3:87286093-87286112 Msa0963060:intron 10.0%
!! TATTATAAATATTTATTAGC+AGG - chr6_3:87288147-87288166 None:intergenic 10.0%
!!! AAAAAAAAAAGATTTTTTTC+AGG - chr6_3:87288426-87288445 None:intergenic 10.0%
!!! AAATTTTTCAAGGAAAAAAA+TGG - chr6_3:87284455-87284474 None:intergenic 15.0%
!! ATAATGTAACAATGTTAATT+TGG + chr6_3:87284953-87284972 Msa0963060:intron 15.0%
!!! CTTTTTATATATGTAAATTC+CGG - chr6_3:87285168-87285187 None:intergenic 15.0%
!!! TTGTTTTTGATTTAATAGAT+AGG + chr6_3:87286245-87286264 Msa0963060:intron 15.0%
!! AAAATAAAATCAAAAGTTGT+TGG - chr6_3:87287662-87287681 None:intergenic 15.0%
!!! TTTATTTTGTTCATAAGATT+TGG + chr6_3:87287674-87287693 Msa0963060:intron 15.0%
!!! TTATTTTGTTCATAAGATTT+GGG + chr6_3:87287675-87287694 Msa0963060:intron 15.0%
!! AAAGATCGAAAAAAATAAAT+AGG + chr6_3:87287838-87287857 Msa0963060:intron 15.0%
!! TCACATGAATATTTAATTAA+AGG - chr6_3:87288296-87288315 None:intergenic 15.0%
!! AAATGAATCAGAAAATATAA+AGG - chr6_3:87288341-87288360 None:intergenic 15.0%
!! ATTATTTCACTTATGTTTGT+TGG + chr6_3:87284333-87284352 Msa0963060:CDS 20.0%
!!! TCTGATTATGAAATTTTTCA+AGG - chr6_3:87284465-87284484 None:intergenic 20.0%
!! ATTATAAATGAGAACTTCTA+CGG + chr6_3:87284504-87284523 Msa0963060:intron 20.0%
!!! TAAAGTTTGAGTTTCTTTTT+TGG + chr6_3:87284792-87284811 Msa0963060:intron 20.0%
!! TACTACTAAGATTACAAAAT+TGG - chr6_3:87284890-87284909 None:intergenic 20.0%
!!! AAAAAAAAGTTTTACGCTTA+TGG + chr6_3:87285129-87285148 Msa0963060:intron 20.0%
!! TTATGGTATAAATTCTTAAC+CGG + chr6_3:87285146-87285165 Msa0963060:intron 20.0%
!! AGAAACATTCATTTCATTAA+CGG - chr6_3:87285431-87285450 None:intergenic 20.0%
!! TAAAGAATCTGTCAATTATA+AGG + chr6_3:87285690-87285709 Msa0963060:intron 20.0%
!! AAGAAACTTAAAGTAAATGA+CGG - chr6_3:87285804-87285823 None:intergenic 20.0%
!!! TCATTTACTTTAAGTTTCTT+AGG + chr6_3:87285804-87285823 Msa0963060:intron 20.0%
!!! TTTGATTTAATAGATAGGAA+TGG + chr6_3:87286250-87286269 Msa0963060:intron 20.0%
!!! ATACAATATTTTGAGTTTGT+AGG - chr6_3:87286529-87286548 None:intergenic 20.0%
!!! TAATTTTCTTAACCTTTTGT+TGG + chr6_3:87287164-87287183 Msa0963060:intron 20.0%
!! ATTAACATAGAAAAAAGCTT+TGG - chr6_3:87287311-87287330 None:intergenic 20.0%
!! CTAATATATCTGATACAAAA+AGG + chr6_3:87287728-87287747 Msa0963060:intron 20.0%
!!! TACAAAAAGGTAACTAATTT+TGG + chr6_3:87287741-87287760 Msa0963060:intron 20.0%
!! TTGGATCATATTATTTAGTT+GGG + chr6_3:87288017-87288036 Msa0963060:CDS 20.0%
!! TTTGTTTCTTCAACAATCAA+TGG - chr6_3:87284207-87284226 None:intergenic 25.0%
! TGAAGAAACAAAACAAAACA+AGG + chr6_3:87284215-87284234 Msa0963060:CDS 25.0%
! TCAGTTACACTCTTAAATTA+TGG + chr6_3:87284303-87284322 Msa0963060:CDS 25.0%
! AATTAATAGTCTACTAATGC+TGG - chr6_3:87284577-87284596 None:intergenic 25.0%
!! CTTTAGTCTCTAAAAAATCA+TGG + chr6_3:87284915-87284934 Msa0963060:intron 25.0%
! AAAAATCATGGATTCAATTG+TGG + chr6_3:87284927-87284946 Msa0963060:intron 25.0%
! AAATCTCAAATATAGAAACG+AGG + chr6_3:87285044-87285063 Msa0963060:intron 25.0%
!!! GTTCTAGTTTAACTTAAACA+TGG - chr6_3:87285077-87285096 None:intergenic 25.0%
! CAATAATTCATAAAACCCTA+GGG - chr6_3:87285323-87285342 None:intergenic 25.0%
!!! CTAGGGTTTTATGAATTATT+GGG + chr6_3:87285322-87285341 Msa0963060:intron 25.0%
! ATTCATTTCATTAACGGAAA+TGG - chr6_3:87285425-87285444 None:intergenic 25.0%
! GTTCATGTATGCTTAAAAAT+CGG - chr6_3:87285503-87285522 None:intergenic 25.0%
! TCACAATGAATAAGAACATA+TGG - chr6_3:87285557-87285576 None:intergenic 25.0%
! TTCTTATTCATTGTGATGTT+TGG + chr6_3:87285561-87285580 Msa0963060:intron 25.0%
! TCTTATTCATTGTGATGTTT+GGG + chr6_3:87285562-87285581 Msa0963060:intron 25.0%
!!! GATCATTTTTCTTGATAACT+TGG + chr6_3:87285625-87285644 Msa0963060:intron 25.0%
! CAGATTCTTTACAATGAATA+TGG - chr6_3:87285681-87285700 None:intergenic 25.0%
! ATGATTAATTAGATAAGCAG+AGG - chr6_3:87285883-87285902 None:intergenic 25.0%
!!! TTCCTATTTTTAATCTCATG+TGG + chr6_3:87285964-87285983 Msa0963060:intron 25.0%
! AACCACATGAGATTAAAAAT+AGG - chr6_3:87285969-87285988 None:intergenic 25.0%
!! AGTCTAAACTTGTTCATAAT+TGG + chr6_3:87286064-87286083 Msa0963060:intron 25.0%
!! TTTTCCTATACTCTAATAGT+AGG + chr6_3:87286156-87286175 Msa0963060:intron 25.0%
!!! ATTTTTGGACAAAATGACAA+AGG - chr6_3:87286211-87286230 None:intergenic 25.0%
!!! TTCCATGTTTTTTTACATGA+AGG - chr6_3:87286713-87286732 None:intergenic 25.0%
! TCATGTAAAAAAACATGGAA+TGG + chr6_3:87286713-87286732 Msa0963060:CDS 25.0%
! ATTACTCAAGTATTAAGAGA+AGG - chr6_3:87286824-87286843 None:intergenic 25.0%
! AATGTGGTCATTTGAATTAA+TGG + chr6_3:87286978-87286997 Msa0963060:CDS 25.0%
! TGAATTAATGGTTCTTCTTT+CGG + chr6_3:87286990-87287009 Msa0963060:CDS 25.0%
! TAGGCTTAAGTTAAATAGTA+TGG - chr6_3:87287282-87287301 None:intergenic 25.0%
!!! AAAAAAGCTTTGGAGAATTT+AGG - chr6_3:87287301-87287320 None:intergenic 25.0%
! TGATACTAGTTCGTAATTTA+TGG + chr6_3:87287520-87287539 Msa0963060:CDS 25.0%
! GATACTAGTTCGTAATTTAT+GGG + chr6_3:87287521-87287540 Msa0963060:CDS 25.0%
! ATACTAGTTCGTAATTTATG+GGG + chr6_3:87287522-87287541 Msa0963060:CDS 25.0%
! CTTGGATCATATTATTTAGT+TGG + chr6_3:87288016-87288035 Msa0963060:CDS 25.0%
! AAAATCGCTATCATAAGATT+TGG + chr6_3:87288116-87288135 Msa0963060:intron 25.0%
!! TTTTCTGATTCATTTTGTAC+AGG + chr6_3:87288346-87288365 Msa0963060:intron 25.0%
!!! TTTGTTTTTCTCAGAGTATT+TGG + chr6_3:87288448-87288467 Msa0963060:three_prime_UTR 25.0%
GGAAGAAGAAAGAAGAAAAT+TGG + chr6_3:87284236-87284255 Msa0963060:CDS 30.0%
AGAAGAAAGAAGAAAATTGG+CGG + chr6_3:87284239-87284258 Msa0963060:CDS 30.0%
! AAGAGTGTAACTGATATCAA+TGG - chr6_3:87284297-87284316 None:intergenic 30.0%
!! TGTTACTGGTTTCAGTTTAT+TGG + chr6_3:87284410-87284429 Msa0963060:CDS 30.0%
TACGGTACACACATAAATTA+TGG + chr6_3:87284522-87284541 Msa0963060:intron 30.0%
ACACATAAATTATGGTGCAT+TGG + chr6_3:87284530-87284549 Msa0963060:intron 30.0%
ATGTGAGTTTGTGTGAATTA+AGG + chr6_3:87284650-87284669 Msa0963060:intron 30.0%
TGGAGGAAAACATTAATACA+AGG + chr6_3:87284860-87284879 Msa0963060:intron 30.0%
CCAATAATTCATAAAACCCT+AGG - chr6_3:87285324-87285343 None:intergenic 30.0%
!! CCTAGGGTTTTATGAATTAT+TGG + chr6_3:87285321-87285340 Msa0963060:intron 30.0%
CTTGTGTTGAATGCATATTT+GGG - chr6_3:87285387-87285406 None:intergenic 30.0%
CAAATATGCATTCAACACAA+GGG + chr6_3:87285386-87285405 Msa0963060:intron 30.0%
CTTATTCATTGTGATGTTTG+GGG + chr6_3:87285563-87285582 Msa0963060:intron 30.0%
CAAACCATTTCTTGAAACAA+GGG - chr6_3:87285594-87285613 None:intergenic 30.0%
ACAAACCATTTCTTGAAACA+AGG - chr6_3:87285595-87285614 None:intergenic 30.0%
TCATTCCGTATTTCAGATAA+GGG + chr6_3:87285906-87285925 Msa0963060:intron 30.0%
AGAGAAAATAGAGGGAAATA+TGG - chr6_3:87286001-87286020 None:intergenic 30.0%
TAGAGTTGAGAGAAAATAGA+GGG - chr6_3:87286009-87286028 None:intergenic 30.0%
TTAGAGTTGAGAGAAAATAG+AGG - chr6_3:87286010-87286029 None:intergenic 30.0%
AACACCTACTATTAGAGTAT+AGG - chr6_3:87286163-87286182 None:intergenic 30.0%
ACATTATGTGGACAATCATA+TGG + chr6_3:87286287-87286306 Msa0963060:intron 30.0%
! AGATCCATTCTCATTTTACT+TGG + chr6_3:87286407-87286426 Msa0963060:CDS 30.0%
CTGTAGATATTTCATGATCT+TGG - chr6_3:87286433-87286452 None:intergenic 30.0%
TATACCATTATCCAACATAG+AGG - chr6_3:87286596-87286615 None:intergenic 30.0%
!! GTACGATATTGAATTTGCTA+TGG - chr6_3:87286648-87286667 None:intergenic 30.0%
TAGCAAATTCAATATCGTAC+TGG + chr6_3:87286648-87286667 Msa0963060:CDS 30.0%
AGCAAATTCAATATCGTACT+GGG + chr6_3:87286649-87286668 Msa0963060:CDS 30.0%
CTCCTTCATGTAAAAAAACA+TGG + chr6_3:87286708-87286727 Msa0963060:CDS 30.0%
GAATTAATGGTTCTTCTTTC+GGG + chr6_3:87286991-87287010 Msa0963060:CDS 30.0%
ATGTAACAATAATGTCGAAG+AGG - chr6_3:87287082-87287101 None:intergenic 30.0%
TAAAAACAGAACGAGACATA+CGG + chr6_3:87287699-87287718 Msa0963060:intron 30.0%
AATAAATAGGTCATCGAAGT+TGG + chr6_3:87287851-87287870 Msa0963060:intron 30.0%
TAGTACAAAAGCGAATACAA+TGG - chr6_3:87288053-87288072 None:intergenic 30.0%
!! TTCGCTTTTGTACTACATAT+TGG + chr6_3:87288058-87288077 Msa0963060:CDS 30.0%
! TAGCGATTTTCATGAAAGAA+TGG - chr6_3:87288106-87288125 None:intergenic 30.0%
TATTTATAATATAGGGCCTG+TGG + chr6_3:87288156-87288175 Msa0963060:intron 30.0%
AATATTCATGTGATGCATTG+TGG + chr6_3:87288303-87288322 Msa0963060:intron 30.0%
ATATTCATGTGATGCATTGT+GGG + chr6_3:87288304-87288323 Msa0963060:intron 30.0%
!! TTTTTCTCAGAGTATTTGGA+AGG + chr6_3:87288452-87288471 Msa0963060:three_prime_UTR 30.0%
!! TTTTCTCAGAGTATTTGGAA+GGG + chr6_3:87288453-87288472 Msa0963060:three_prime_UTR 30.0%
TGAAGGAAAATAATATGTGC+TGG + chr6_3:87288498-87288517 Msa0963060:three_prime_UTR 30.0%
! GAGAATGAAGAGACATGTTT+TGG - chr6_3:87284185-87284204 None:intergenic 35.0%
AAGAAGTGAAGACACAGTTA+TGG + chr6_3:87284262-87284281 Msa0963060:CDS 35.0%
AAGACACAGTTATGGTTATC+AGG + chr6_3:87284270-87284289 Msa0963060:CDS 35.0%
AGACACAGTTATGGTTATCA+GGG + chr6_3:87284271-87284290 Msa0963060:CDS 35.0%
! CTTATGTTTGTTGGTCATCT+TGG + chr6_3:87284342-87284361 Msa0963060:CDS 35.0%
! ACTTCTTTTGCTTCTGTTAC+TGG + chr6_3:87284396-87284415 Msa0963060:CDS 35.0%
! GGTTGTCAGAATCTTTTTGA+AGG + chr6_3:87284813-87284832 Msa0963060:intron 35.0%
!! GGACGAAAATTTTTGTTTGC+TGG + chr6_3:87284974-87284993 Msa0963060:intron 35.0%
ACAATCCTAGAATTTGTACC+TGG + chr6_3:87285240-87285259 Msa0963060:intron 35.0%
CTTAACCAGGTACAAATTCT+AGG - chr6_3:87285248-87285267 None:intergenic 35.0%
CTAGAATTTGTACCTGGTTA+AGG + chr6_3:87285246-87285265 Msa0963060:intron 35.0%
AATTTGTACCTGGTTAAGGA+TGG + chr6_3:87285250-87285269 Msa0963060:intron 35.0%
CCTTGTGTTGAATGCATATT+TGG - chr6_3:87285388-87285407 None:intergenic 35.0%
CCAAATATGCATTCAACACA+AGG + chr6_3:87285385-87285404 Msa0963060:intron 35.0%
CATTTCATTAACGGAAATGG+AGG - chr6_3:87285422-87285441 None:intergenic 35.0%
ATGGATGATACCATGTTTAC+TGG - chr6_3:87285728-87285747 None:intergenic 35.0%
!! TTGCGACACCATTTTGATAT+GGG - chr6_3:87285771-87285790 None:intergenic 35.0%
!! TTTGCGACACCATTTTGATA+TGG - chr6_3:87285772-87285791 None:intergenic 35.0%
GTCATTCCGTATTTCAGATA+AGG + chr6_3:87285905-87285924 Msa0963060:intron 35.0%
! GACTACCCTTATCTGAAATA+CGG - chr6_3:87285914-87285933 None:intergenic 35.0%
AGTTTAGACTTCGAGGTAAT+GGG - chr6_3:87286054-87286073 None:intergenic 35.0%
AAGTTTAGACTTCGAGGTAA+TGG - chr6_3:87286055-87286074 None:intergenic 35.0%
ATGAACAAGTTTAGACTTCG+AGG - chr6_3:87286061-87286080 None:intergenic 35.0%
TTGTCCACATAATGTGTCTA+AGG - chr6_3:87286282-87286301 None:intergenic 35.0%
TTGGCCAAGTAAAATGAGAA+TGG - chr6_3:87286414-87286433 None:intergenic 35.0%
CATGAAATATCTACAGAAGC+TGG + chr6_3:87286437-87286456 Msa0963060:CDS 35.0%
ATGAAGTAATGTTGTAACCG+AGG - chr6_3:87286570-87286589 None:intergenic 35.0%
TACTTCATCTTCCTCTATGT+TGG + chr6_3:87286582-87286601 Msa0963060:CDS 35.0%
TCTTCCTCTATGTTGGATAA+TGG + chr6_3:87286589-87286608 Msa0963060:CDS 35.0%
! TGGATAATGGTATACAAGTC+TGG + chr6_3:87286602-87286621 Msa0963060:CDS 35.0%
ATGGTATACAAGTCTGGATT+AGG + chr6_3:87286608-87286627 Msa0963060:CDS 35.0%
! AACATGGAATGGTTTTTCCA+AGG + chr6_3:87286724-87286743 Msa0963060:CDS 35.0%
!!! TTCCTTTGTTTTCTTCGTCA+TGG + chr6_3:87286942-87286961 Msa0963060:CDS 35.0%
TCTTCTTCCAAATCCAAAGT+TGG + chr6_3:87287014-87287033 Msa0963060:CDS 35.0%
GATGTTTCCAACTTTGGATT+TGG - chr6_3:87287024-87287043 None:intergenic 35.0%
AAACATCTGTGCTTTCTATC+TGG + chr6_3:87287037-87287056 Msa0963060:CDS 35.0%
!!! TTAACCTTTTGTTGGTGACT+TGG + chr6_3:87287172-87287191 Msa0963060:intron 35.0%
TAAATACAACAGCAGCTGTT+TGG + chr6_3:87287206-87287225 Msa0963060:CDS 35.0%
ATTCGTGTTTCGAATGAACT+TGG + chr6_3:87287411-87287430 Msa0963060:CDS 35.0%
GACTAAGATGCTCTCAATAA+CGG - chr6_3:87287490-87287509 None:intergenic 35.0%
!! GTTATTGAGAGCATCTTAGT+CGG + chr6_3:87287489-87287508 Msa0963060:CDS 35.0%
TTGCATTCCATCTAGTAAGT+GGG - chr6_3:87287616-87287635 None:intergenic 35.0%
AAAAACAGAACGAGACATAC+GGG + chr6_3:87287700-87287719 Msa0963060:intron 35.0%
TTGGCATCTCTAACACTTAT+TGG + chr6_3:87287870-87287889 Msa0963060:intron 35.0%
!! ATTGGTGCTTTTGTCAATCT+TGG + chr6_3:87287998-87288017 Msa0963060:CDS 35.0%
! GCTTTTGTACTACATATTGG+CGG + chr6_3:87288061-87288080 Msa0963060:CDS 35.0%
! CTTTTGTACTACATATTGGC+GGG + chr6_3:87288062-87288081 Msa0963060:CDS 35.0%
TCATTACAATACGCACAGAT+TGG + chr6_3:87288225-87288244 Msa0963060:CDS 35.0%
CATTACAATACGCACAGATT+GGG + chr6_3:87288226-87288245 Msa0963060:CDS 35.0%
TATTCATGTGATGCATTGTG+GGG + chr6_3:87288305-87288324 Msa0963060:intron 35.0%
! TCATTTTGTACAGGCAAAGA+AGG + chr6_3:87288355-87288374 Msa0963060:intron 35.0%
! TTTCTCAGAGTATTTGGAAG+GGG + chr6_3:87288454-87288473 Msa0963060:three_prime_UTR 35.0%
ATCTTTCAATGCACTGTTGA+AGG + chr6_3:87288481-87288500 Msa0963060:three_prime_UTR 35.0%
AGAAGCAAAAGAAGTAGCCA+TGG - chr6_3:87284391-87284410 None:intergenic 40.0%
TGCATTCATGCAATCAGACA+TGG + chr6_3:87284702-87284721 Msa0963060:intron 40.0%
!! GATGGATGTCTGGGATTTTA+GGG + chr6_3:87285268-87285287 Msa0963060:intron 40.0%
! TGATTTGGACACGACAATGA+AGG - chr6_3:87285349-87285368 None:intergenic 40.0%
TCATTGTCGTGTCCAAATCA+CGG + chr6_3:87285349-87285368 Msa0963060:intron 40.0%
TCATTAACGGAAATGGAGGA+TGG - chr6_3:87285418-87285437 None:intergenic 40.0%
TGCAGCTTTACCAGTAAACA+TGG + chr6_3:87285715-87285734 Msa0963060:intron 40.0%
TGTCGACACATGTGAATTCA+TGG - chr6_3:87285747-87285766 None:intergenic 40.0%
!! TGCGACACCATTTTGATATG+GGG - chr6_3:87285770-87285789 None:intergenic 40.0%
! GTAATGGGAAAAGGGAACAA+AGG - chr6_3:87286039-87286058 None:intergenic 40.0%
!! ACTTCGAGGTAATGGGAAAA+GGG - chr6_3:87286047-87286066 None:intergenic 40.0%
TGACAAAGGTTGAATCTCAG+TGG - chr6_3:87286197-87286216 None:intergenic 40.0%
AGTGCCTTAGACACATTATG+TGG + chr6_3:87286275-87286294 Msa0963060:intron 40.0%
GACGATCATGAGAATGAACA+TGG - chr6_3:87286354-87286373 None:intergenic 40.0%
TATTCCCCTCGCGATTATTT+GGG + chr6_3:87286376-87286395 Msa0963060:CDS 40.0%
TGGCAGCTATGCAAAGTTAA+TGG + chr6_3:87286457-87286476 Msa0963060:CDS 40.0%
! GTTCCATGCCTTTTTGCTTA+CGG + chr6_3:87286479-87286498 Msa0963060:CDS 40.0%
GTAGAAGACCGTAAGCAAAA+AGG - chr6_3:87286490-87286509 None:intergenic 40.0%
! TCCAATGATGTTTAGCTCCT+CGG + chr6_3:87286550-87286569 Msa0963060:CDS 40.0%
TTTGACATAGAGTGCGAGTA+TGG - chr6_3:87286684-87286703 None:intergenic 40.0%
TGGCAAGCTTCAGGAAAATT+GGG - chr6_3:87286772-87286791 None:intergenic 40.0%
ATGGCAAGCTTCAGGAAAAT+TGG - chr6_3:87286773-87286792 None:intergenic 40.0%
AACCATTACAGCTGAAGGAA+TGG - chr6_3:87286792-87286811 None:intergenic 40.0%
TTCCTTCAGCTGTAATGGTT+TGG + chr6_3:87286792-87286811 Msa0963060:intron 40.0%
TACCAAACCATTACAGCTGA+AGG - chr6_3:87286797-87286816 None:intergenic 40.0%
CACCATGACGAAGAAAACAA+AGG - chr6_3:87286947-87286966 None:intergenic 40.0%
AGCACAGATGTTTCCAACTT+TGG - chr6_3:87287030-87287049 None:intergenic 40.0%
ATCTGTGCTTTCTATCTGGT+TGG + chr6_3:87287041-87287060 Msa0963060:intron 40.0%
AGAACCAAGTCACCAACAAA+AGG - chr6_3:87287179-87287198 None:intergenic 40.0%
GAGCTGTAAGGTTTGAAAAC+AGG + chr6_3:87287251-87287270 Msa0963060:intron 40.0%
TCCATCTAGTAAGTGGGATA+CGG - chr6_3:87287610-87287629 None:intergenic 40.0%
CTTGCATTCCATCTAGTAAG+TGG - chr6_3:87287617-87287636 None:intergenic 40.0%
GATCTCCTTCACTATGATTC+AGG + chr6_3:87287947-87287966 Msa0963060:intron 40.0%
CAGTACCTGAATCATAGTGA+AGG - chr6_3:87287955-87287974 None:intergenic 40.0%
! TATGATTCAGGTACTGCTAG+AGG + chr6_3:87287959-87287978 Msa0963060:intron 40.0%
GGCGGGAAGGTAAAAATAAA+TGG + chr6_3:87288079-87288098 Msa0963060:intron 40.0%
CTTGGTGAGTTATCTCTCTC+TGG + chr6_3:87284360-87284379 Msa0963060:CDS 45.0%
TTCCTCCAATCGTGTAGTCA+GGG - chr6_3:87284848-87284867 None:intergenic 45.0%
TTTCCTCCAATCGTGTAGTC+AGG - chr6_3:87284849-87284868 None:intergenic 45.0%
CTGGTTAAGGATGGATGTCT+GGG + chr6_3:87285259-87285278 Msa0963060:intron 45.0%
!! GGATGGATGTCTGGGATTTT+AGG + chr6_3:87285267-87285286 Msa0963060:intron 45.0%
!!! GATTTTAGGGTGAGTGTGTG+TGG + chr6_3:87285281-87285300 Msa0963060:intron 45.0%
TGTGTGGTCGAAAATTGTCC+TGG + chr6_3:87285297-87285316 Msa0963060:intron 45.0%
ATTCATAAAACCCTAGGGCC+AGG - chr6_3:87285318-87285337 None:intergenic 45.0%
TGCATTCAACACAAGGGTCT+TGG + chr6_3:87285392-87285411 Msa0963060:intron 45.0%
TCATTGTGATGTTTGGGGAC+TGG + chr6_3:87285568-87285587 Msa0963060:intron 45.0%
! CTGGCCCTTGTTTCAAGAAA+TGG + chr6_3:87285587-87285606 Msa0963060:intron 45.0%
GTCGACACCCCATATCAAAA+TGG + chr6_3:87285760-87285779 Msa0963060:intron 45.0%
!! GACTTCGAGGTAATGGGAAA+AGG - chr6_3:87286048-87286067 None:intergenic 45.0%
GGTTGAATCTCAGTGGATCA+TGG - chr6_3:87286190-87286209 None:intergenic 45.0%
CTATTCCCCTCGCGATTATT+TGG + chr6_3:87286375-87286394 Msa0963060:CDS 45.0%
TTTGCCCAAATAATCGCGAG+GGG - chr6_3:87286383-87286402 None:intergenic 45.0%
GTTTGCCCAAATAATCGCGA+GGG - chr6_3:87286384-87286403 None:intergenic 45.0%
TGTTTGCCCAAATAATCGCG+AGG - chr6_3:87286385-87286404 None:intergenic 45.0%
AGACCGTAAGCAAAAAGGCA+TGG - chr6_3:87286485-87286504 None:intergenic 45.0%
ACCGAGGAGCTAAACATCAT+TGG - chr6_3:87286554-87286573 None:intergenic 45.0%
! AAGTCTGGATTAGGTAGCAG+AGG + chr6_3:87286617-87286636 Msa0963060:CDS 45.0%
TGCCATTCCTTCAGCTGTAA+TGG + chr6_3:87286787-87286806 Msa0963060:CDS 45.0%
!! GTTTCGAATGAACTTGGTGC+TGG + chr6_3:87287417-87287436 Msa0963060:CDS 45.0%
!! TGAGAGCATCTTAGTCGGAA+CGG + chr6_3:87287494-87287513 Msa0963060:CDS 45.0%
AAGTGGGATACGGCAAGAAT+TGG - chr6_3:87287600-87287619 None:intergenic 45.0%
GGAATGCAAGCTGTTCTTTC+AGG + chr6_3:87287627-87287646 Msa0963060:CDS 45.0%
GGATGTGGTTGGCAGAAAAT+TGG + chr6_3:87287980-87287999 Msa0963060:CDS 45.0%
AAAGCGAATACAATGGCTGC+TGG - chr6_3:87288046-87288065 None:intergenic 45.0%
TGTACTACATATTGGCGGGA+AGG + chr6_3:87288066-87288085 Msa0963060:CDS 45.0%
TATAATATAGGGCCTGTGGC+TGG + chr6_3:87288160-87288179 Msa0963060:intron 45.0%
ATAATATAGGGCCTGTGGCT+GGG + chr6_3:87288161-87288180 Msa0963060:intron 45.0%
! ACAAAGCGCTTGAACAACGA+GGG - chr6_3:87288198-87288217 None:intergenic 45.0%
!!! ACTTTTTTTTTTTTTTTTTT+TGG - chr6_3:87285119-87285138 None:intergenic 5.0%
!!! AATAAAATCAAATTTATTTT+TGG - chr6_3:87286226-87286245 None:intergenic 5.0%
!! CTAATAAATATTTATAATAT+AGG + chr6_3:87288148-87288167 Msa0963060:intron 5.0%
ATCTCTCTCTGGTGCTTCCA+TGG + chr6_3:87284371-87284390 Msa0963060:CDS 50.0%
CAATCGTGTAGTCAGGGTAC+TGG - chr6_3:87284842-87284861 None:intergenic 50.0%
CAGTACCCTGACTACACGAT+TGG + chr6_3:87284840-87284859 Msa0963060:intron 50.0%
TACCCTGACTACACGATTGG+AGG + chr6_3:87284843-87284862 Msa0963060:intron 50.0%
CCAGACATCCATCCTTAACC+AGG - chr6_3:87285261-87285280 None:intergenic 50.0%
CCTGGTTAAGGATGGATGTC+TGG + chr6_3:87285258-87285277 Msa0963060:intron 50.0%
TCGAAAATTGTCCTGGCCCT+AGG + chr6_3:87285304-87285323 Msa0963060:intron 50.0%
CGAAAATTGTCCTGGCCCTA+GGG + chr6_3:87285305-87285324 Msa0963060:intron 50.0%
TTGTCGTGTCCAAATCACGG+TGG + chr6_3:87285352-87285371 Msa0963060:intron 50.0%
TGTCGTGTCCAAATCACGGT+GGG + chr6_3:87285353-87285372 Msa0963060:intron 50.0%
ACATGTACCCCACCGTGATT+TGG - chr6_3:87285364-87285383 None:intergenic 50.0%
GCATGTGTATGCCTGACATG+CGG - chr6_3:87286325-87286344 None:intergenic 50.0%
GTTCAGTGCAAGTGCTTCCT+TGG - chr6_3:87286744-87286763 None:intergenic 50.0%
CTGAAGGAATGGCAAGCTTC+AGG - chr6_3:87286781-87286800 None:intergenic 50.0%
TGGTGAGCAGCTTGGAAATG+TGG + chr6_3:87286962-87286981 Msa0963060:CDS 50.0%
GCTGTTTGGATGATCCCCTT+CGG + chr6_3:87287220-87287239 Msa0963060:CDS 50.0%
GCCGTATCCCACTTACTAGA+TGG + chr6_3:87287606-87287625 Msa0963060:CDS 50.0%
! TCAGGTACTGCTAGAGGATG+TGG + chr6_3:87287965-87287984 Msa0963060:intron 50.0%
GTACTGCTAGAGGATGTGGT+TGG + chr6_3:87287969-87287988 Msa0963060:CDS 50.0%
TAATATAGGGCCTGTGGCTG+GGG + chr6_3:87288162-87288181 Msa0963060:intron 50.0%
CACATATAATCCCCAGCCAC+AGG - chr6_3:87288175-87288194 None:intergenic 50.0%
! GACAAAGCGCTTGAACAACG+AGG - chr6_3:87288199-87288218 None:intergenic 50.0%
ACGCACAGATTGGGAGAAAG+AGG + chr6_3:87288235-87288254 Msa0963060:CDS 50.0%
!! TCGTGTAGTCAGGGTACTGG+AGG - chr6_3:87284839-87284858 None:intergenic 55.0%
GTCGTGTCCAAATCACGGTG+GGG + chr6_3:87285354-87285373 Msa0963060:intron 55.0%
GCAAAGCAGTACCGCATGTC+AGG + chr6_3:87286311-87286330 Msa0963060:intron 55.0%
CTTCGTCATGGTGAGCAGCT+TGG + chr6_3:87286954-87286973 Msa0963060:CDS 55.0%
ATGATCCCCTTCGGACTCAG+TGG + chr6_3:87287229-87287248 Msa0963060:CDS 55.0%
ACAGCTCCACTGAGTCCGAA+GGG - chr6_3:87287238-87287257 None:intergenic 55.0%
TACAGCTCCACTGAGTCCGA+AGG - chr6_3:87287239-87287258 None:intergenic 55.0%
TCGGACTCAGTGGAGCTGTA+AGG + chr6_3:87287239-87287258 Msa0963060:CDS 55.0%
!! ACTTGGTGCTGGTCATCCAC+AGG + chr6_3:87287428-87287447 Msa0963060:CDS 55.0%
CAGCTCCACTGAGTCCGAAG+GGG - chr6_3:87287237-87287256 None:intergenic 60.0%
TCATCCACAGGCTGCGCGTT+TGG + chr6_3:87287440-87287459 Msa0963060:CDS 60.0%
ACTGCCAAACGCGCAGCCTG+TGG - chr6_3:87287447-87287466 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 87284144 87288565 87284144 ID=Msa0963060;Name=Msa0963060
chr6_3 mRNA 87284144 87288565 87284144 ID=Msa0963060-mRNA-1;Parent=Msa0963060;Name=Msa0963060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=45|0.71|0.75|1|0.71|0.62|8|138|473
chr6_3 exon 87284144 87284431 87284144 ID=Msa0963060-mRNA-1:exon:15772;Parent=Msa0963060-mRNA-1
chr6_3 exon 87286320 87286808 87286320 ID=Msa0963060-mRNA-1:exon:15773;Parent=Msa0963060-mRNA-1
chr6_3 exon 87286931 87287058 87286931 ID=Msa0963060-mRNA-1:exon:15774;Parent=Msa0963060-mRNA-1
chr6_3 exon 87287204 87287260 87287204 ID=Msa0963060-mRNA-1:exon:15775;Parent=Msa0963060-mRNA-1
chr6_3 exon 87287410 87287648 87287410 ID=Msa0963060-mRNA-1:exon:15776;Parent=Msa0963060-mRNA-1
chr6_3 exon 87287969 87288087 87287969 ID=Msa0963060-mRNA-1:exon:15777;Parent=Msa0963060-mRNA-1
chr6_3 exon 87288170 87288256 87288170 ID=Msa0963060-mRNA-1:exon:15778;Parent=Msa0963060-mRNA-1
chr6_3 exon 87288368 87288565 87288368 ID=Msa0963060-mRNA-1:exon:15779;Parent=Msa0963060-mRNA-1
chr6_3 five_prime_UTR 87284144 87284188 87284144 ID=Msa0963060-mRNA-1:five_prime_utr;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87284189 87284431 87284189 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87286320 87286808 87286320 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87286931 87287058 87286931 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87287204 87287260 87287204 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87287410 87287648 87287410 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87287969 87288087 87287969 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87288170 87288256 87288170 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 CDS 87288368 87288427 87288368 ID=Msa0963060-mRNA-1:cds;Parent=Msa0963060-mRNA-1
chr6_3 three_prime_UTR 87288428 87288565 87288428 ID=Msa0963060-mRNA-1:three_prime_utr;Parent=Msa0963060-mRNA-1
Gene Sequence

>Msa0963060

ATGTCTCTTCATTCTCCATTGATTGTTGAAGAAACAAAACAAAACAAGGAAGAAGAAAGAAGAAAATTGGCGGAAGAAGTGAAGACACAGTTATGGTTATCAGGGCCATTGATATCAGTTACACTCTTAAATTATGGTATCAATATTATTTCACTTATGTTTGTTGGTCATCTTGGTGAGTTATCTCTCTCTGGTGCTTCCATGGCTACTTCTTTTGCTTCTGTTACTGGTTTCAGTTTATTGTACCGCATGTCAGGCATACACATGCAAAGAGCCATGTTCATTCTCATGATCGTCGCTATTCCCCTCGCGATTATTTGGGCAAACACAAGATCCATTCTCATTTTACTTGGCCAAGATCATGAAATATCTACAGAAGCTGGCAGCTATGCAAAGTTAATGGTTCCATGCCTTTTTGCTTACGGTCTTCTACAATGTCTCAACAGATTCCTACAAACTCAAAATATTGTATTTCCAATGATGTTTAGCTCCTCGGTTACAACATTACTTCATCTTCCTCTATGTTGGATAATGGTATACAAGTCTGGATTAGGTAGCAGAGGAGCTGCCATAGCAAATTCAATATCGTACTGGGTGAATGTTACCATACTCGCACTCTATGTCAAATTTTCTCCTTCATGTAAAAAAACATGGAATGGTTTTTCCAAGGAAGCACTTGCACTGAACAATATCCCAATTTTCCTGAAGCTTGCCATTCCTTCAGCTGTAATGTCTAATGTTGCTTCCTTTGTTTTCTTCGTCATGGTGAGCAGCTTGGAAATGTGGTCATTTGAATTAATGGTTCTTCTTTCGGGTCTTCTTCCAAATCCAAAGTTGGAAACATCTGTGCTTTCTATCTGTTTAAATACAACAGCAGCTGTTTGGATGATCCCCTTCGGACTCAGTGGAGCTGTAAGCATTCGTGTTTCGAATGAACTTGGTGCTGGTCATCCACAGGCTGCGCGTTTGGCAGTTTGTGTCGTTGTAGTGATTGCCGTTATTGAGAGCATCTTAGTCGGAACGGTGATGATACTAGTTCGTAATTTATGGGGTTATGCTTATAGCAATGAAGAAGAAGTAGTCAAATATGTTTCAACTATGATGCCAATTCTTGCCGTATCCCACTTACTAGATGGAATGCAAGCTGTTCTTTCAGGTACTGCTAGAGGATGTGGTTGGCAGAAAATTGGTGCTTTTGTCAATCTTGGATCATATTATTTAGTTGGGATTCCAGCAGCCATTGTATTCGCTTTTGTACTACATATTGGCGGGAAGGGCCTGTGGCTGGGGATTATATGTGCCCTCGTTGTTCAAGCGCTTTGTCTAATGATCATTACAATACGCACAGATTGGGAGAAAGAGGCAAAGAAGGCTACTGATAGAGTTCATAATGCGATAACAACAGAGAGCTTAGTCTCCTGA
Protein sequence

>Msa0963060

MSLHSPLIVEETKQNKEEERRKLAEEVKTQLWLSGPLISVTLLNYGINIISLMFVGHLGELSLSGASMATSFASVTGFSLLYRMSGIHMQRAMFILMIVAIPLAIIWANTRSILILLGQDHEISTEAGSYAKLMVPCLFAYGLLQCLNRFLQTQNIVFPMMFSSSVTTLLHLPLCWIMVYKSGLGSRGAAIANSISYWVNVTILALYVKFSPSCKKTWNGFSKEALALNNIPIFLKLAIPSAVMSNVASFVFFVMVSSLEMWSFELMVLLSGLLPNPKLETSVLSICLNTTAAVWMIPFGLSGAVSIRVSNELGAGHPQAARLAVCVVVVIAVIESILVGTVMILVRNLWGYAYSNEEEVVKYVSTMMPILAVSHLLDGMQAVLSGTARGCGWQKIGAFVNLGSYYLVGIPAAIVFAFVLHIGGKGLWLGIICALVVQALCLMIITIRTDWEKEAKKATDRVHNAITTESLVS*