AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0207990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207990 MtrunA17_Chr2g0306391 93.735 415 3 1 1 392 1 415 0.0 792
Msa0207990 MtrunA17_Chr4g0062811 73.529 408 78 6 12 392 10 414 0.0 591
Msa0207990 MtrunA17_Chr3g0132041 48.754 281 112 5 128 376 103 383 2.13e-82 257
Msa0207990 MtrunA17_Chr1g0208941 42.066 271 107 3 121 368 75 318 1.79e-64 210
Msa0207990 MtrunA17_Chr7g0235761 39.333 300 138 7 121 376 67 366 2.34e-63 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0207990 AT1G08510.1 70.864 405 86 6 1 376 1 402 0.0 546
Msa0207990 AT3G25110.1 40.604 298 131 8 121 377 68 360 2.43e-69 223
Msa0207990 AT4G13050.1 38.462 299 136 6 123 376 69 364 4.78e-66 214

Find 136 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAATTGTTGTTATATA+TGG 0.196107 2_1:-41249964 Msa0207990:three_prime_UTR
AGCTCATGACTTTCCAAAAT+TGG 0.201804 2_1:+41250491 None:intergenic
TCAAAATTGTTGATAGGTTT+TGG 0.207603 2_1:+41250290 None:intergenic
CACTCACATCGCTGGCTTGC+TGG 0.220561 2_1:-41254630 Msa0207990:five_prime_UTR
TGTCAAGATTTCCCCTGTTT+TGG 0.226691 2_1:+41252487 None:intergenic
GAGTGCTCCACAGCCAATTT+TGG 0.240163 2_1:-41250504 Msa0207990:CDS
ATAATGTTTGTTTGTGAGTT+AGG 0.244213 2_1:+41254606 None:intergenic
AACCGCAGTTCCGTTGATTT+TGG 0.259020 2_1:+41253669 None:intergenic
GAAAACAAGTAAGGCTTTAT+AGG 0.268157 2_1:+41250191 None:intergenic
TCCATCTTCCAATTCATATA+TGG 0.276238 2_1:-41250050 Msa0207990:three_prime_UTR
GTTAAGACTGCCGGGCTTCT+TGG 0.280843 2_1:-41253222 Msa0207990:CDS
TCGATTAGATCGTACGAAAT+AGG 0.292735 2_1:-41253412 Msa0207990:CDS
GATATGCTTGTTGATCCTTT+TGG 0.318826 2_1:-41253481 Msa0207990:CDS
ATGATGGTGCCGAGATTGTT+AGG 0.330723 2_1:-41250331 Msa0207990:CDS
CAGGGGCGGGCGGGATAGCC+AGG 0.333199 2_1:-41254710 Msa0207990:five_prime_UTR
ATCTCTCCTCTGACCTCTTC+CGG 0.338263 2_1:+41252092 None:intergenic
TGATAGTGAGTCAAACATTT+AGG 0.340023 2_1:+41250238 None:intergenic
CTGTTATCCTCGTCCACAAC+TGG 0.341684 2_1:+41252044 None:intergenic
ACGATCTAATCGAGAAGTTT+TGG 0.341954 2_1:+41253422 None:intergenic
TCATCAATCAGTTGCCTGAT+TGG 0.344132 2_1:-41253588 Msa0207990:CDS
CTTGTGCGGGATGCCAAAAC+AGG 0.344885 2_1:-41252500 Msa0207990:CDS
GACGTTAATGAATCATTTGC+AGG 0.353941 2_1:-41253365 Msa0207990:intron
TACCATAACCATATATGAAT+TGG 0.355189 2_1:+41250042 None:intergenic
AAATCCAAGCAAAGCTCTAA+TGG 0.355569 2_1:-41253721 Msa0207990:CDS
TTCCAATTCATATATGGTTA+TGG 0.356436 2_1:-41250044 Msa0207990:three_prime_UTR
AGAACATCAAAATTGTTGAT+AGG 0.357493 2_1:+41250284 None:intergenic
GGGCTTCTTGGTGATGGCTT+TGG 0.374601 2_1:-41253210 Msa0207990:CDS
CTTCTCAGCAGCAAGGAAAA+TGG 0.375814 2_1:+41253540 None:intergenic
AGCAGAACTAACTCCATGTT+TGG 0.390225 2_1:+41253759 None:intergenic
GATGAAGATGATGATGTAAC+AGG 0.397644 2_1:+41253802 None:intergenic
TATATGGTTATGGTACTGTT+AGG 0.400638 2_1:-41250034 Msa0207990:three_prime_UTR
GTTAATTCAACGGGTGAAAG+AGG 0.404470 2_1:-41250134 Msa0207990:three_prime_UTR
GACACTTGGGTTTCTGCGGC+AGG 0.408861 2_1:-41252548 Msa0207990:CDS
ACTAACTAAACTTGATGATT+CGG 0.409649 2_1:-41252018 Msa0207990:CDS
TAATGTTTGTTTGTGAGTTA+GGG 0.414341 2_1:+41254607 None:intergenic
AAAGGATCAACAAGCATATC+AGG 0.416344 2_1:+41253484 None:intergenic
CTAATATATGTTAATTCAAC+GGG 0.440914 2_1:-41250143 Msa0207990:three_prime_UTR
CAGTCCCTGACATCTGTCTC+TGG 0.445222 2_1:-41250416 Msa0207990:CDS
TAGAGAACTTTAAAAGCAGC+AGG 0.455932 2_1:-41254729 None:intergenic
TGAGCTGCATTCCATGACTT+TGG 0.456877 2_1:-41250474 Msa0207990:CDS
AAGGAAACTATCTAAAATTC+CGG 0.457461 2_1:-41252111 Msa0207990:CDS
GCAAGAAGCATGCTCCAATC+AGG 0.458148 2_1:+41253574 None:intergenic
CAAGAGAATAGAGTTGAAAC+AGG 0.464573 2_1:+41254473 None:intergenic
CTTAATCATGTTAAGACTGC+CGG 0.467906 2_1:-41253231 Msa0207990:CDS
AGCAGTGGATGATGCTTGAT+TGG 0.473258 2_1:-41253519 Msa0207990:CDS
TAAAAGCAGCAGGGGCGGGC+GGG 0.477170 2_1:-41254719 Msa0207990:five_prime_UTR
GTTAGTTCTGCTAACCTTGG+AGG 0.478639 2_1:-41253748 Msa0207990:CDS
GTGAGTGAGTGGCACAGAAT+TGG 0.479676 2_1:+41254646 None:intergenic
AAAATGGTATGCGTCGTGAT+TGG 0.485644 2_1:-41252523 Msa0207990:CDS
GAGATTGTTAGGGGTAGGAC+TGG 0.487479 2_1:-41250320 Msa0207990:CDS
TCTGTCTCTGGTGCTGACAT+TGG 0.489613 2_1:-41250404 Msa0207990:CDS
AACTGATTGATGAATGTCCT+TGG 0.491484 2_1:+41253598 None:intergenic
TTAAAAGCAGCAGGGGCGGG+CGG 0.491991 2_1:-41254720 Msa0207990:five_prime_UTR
TATCAGCTGGAGGTGCAGAT+TGG 0.494151 2_1:-41250220 Msa0207990:three_prime_UTR
ACTTTAAAAGCAGCAGGGGC+GGG 0.495025 2_1:-41254723 Msa0207990:five_prime_UTR
GGGCGGGCGGGATAGCCAGG+TGG 0.495614 2_1:-41254707 Msa0207990:five_prime_UTR
TGATGGTGCCGAGATTGTTA+GGG 0.496988 2_1:-41250330 Msa0207990:CDS
TTCTGATCCAGTTGTGGACG+AGG 0.498778 2_1:-41252051 Msa0207990:CDS
ACTGCCGGGCTTCTTGGTGA+TGG 0.499989 2_1:-41253216 Msa0207990:CDS
AAAGCCATCACCAAGAAGCC+CGG 0.500537 2_1:+41253212 None:intergenic
ACTATCTAAAATTCCGGAAG+AGG 0.500584 2_1:-41252105 Msa0207990:CDS
TGTTACTCGGATGCAGGTTG+TGG 0.502339 2_1:-41253148 Msa0207990:CDS
TGACTTTCCAAAATTGGCTG+TGG 0.502973 2_1:+41250497 None:intergenic
TATATAACGAAGTGGCTGGC+TGG 0.505440 2_1:-41254672 Msa0207990:five_prime_UTR
AACATTTAGGTGCTCTGTGA+TGG 0.506232 2_1:+41250251 None:intergenic
ACCATATATGAATTGGAAGA+TGG 0.507891 2_1:+41250049 None:intergenic
TCAACGGGTGAAAGAGGGAT+AGG 0.509607 2_1:-41250128 Msa0207990:three_prime_UTR
ATGTTTGACTCACTATCAGC+TGG 0.510915 2_1:-41250233 Msa0207990:three_prime_UTR
ATTCCATGACTTTGGAGTAC+AGG 0.511740 2_1:-41250466 Msa0207990:CDS
AACTTTAAAAGCAGCAGGGG+CGG 0.513042 2_1:-41254724 Msa0207990:five_prime_UTR
CACTTGCTTCGACTCGATGA+TGG 0.516598 2_1:-41250347 Msa0207990:CDS
ACTTGATATGGGTTGTTACT+CGG 0.517014 2_1:-41253161 Msa0207990:CDS
TAATCCATTAGAGCTTTGCT+TGG 0.517131 2_1:+41253717 None:intergenic
AGAACTAACTCCATGTTTGG+AGG 0.519503 2_1:+41253762 None:intergenic
GTGCCACTCACTCACATCGC+TGG 0.520638 2_1:-41254638 Msa0207990:five_prime_UTR
AGATCTCATGAAAACAAGTA+AGG 0.521133 2_1:+41250182 None:intergenic
TCGGCTGAATATATTCGCAC+TGG 0.521996 2_1:-41251999 Msa0207990:CDS
TATATATATAACGAAGTGGC+TGG 0.531033 2_1:-41254676 Msa0207990:five_prime_UTR
TTAATCATGTTAAGACTGCC+GGG 0.532564 2_1:-41253230 Msa0207990:CDS
TCATCTTCATCTGACAGTGT+TGG 0.533513 2_1:-41253790 Msa0207990:CDS
CAGCACCAGAGACAGATGTC+AGG 0.537306 2_1:+41250411 None:intergenic
GTCCTTGGGTGATGTTGTGA+TGG 0.537958 2_1:+41253613 None:intergenic
ATGGGTTGTTACTCGGATGC+AGG 0.539000 2_1:-41253154 Msa0207990:CDS
TCCTTGCTGCTGAGAAGCAG+TGG 0.539829 2_1:-41253534 Msa0207990:CDS
AGATTGTTAGGGGTAGGACT+GGG 0.539935 2_1:-41250319 Msa0207990:CDS
GGAGTTAGTTCTGCTAACCT+TGG 0.540076 2_1:-41253751 Msa0207990:CDS
TGAATTGGAAGATGGAGCAG+AGG 0.546647 2_1:+41250057 None:intergenic
AAGTTGTTCAAGTAGACACT+TGG 0.551856 2_1:-41252562 Msa0207990:CDS
TTAATTCAACGGGTGAAAGA+GGG 0.552381 2_1:-41250133 Msa0207990:three_prime_UTR
GCGTCGTGATTGGCTTGTGC+GGG 0.553139 2_1:-41252513 Msa0207990:CDS
TTGTTAGGGGTAGGACTGGG+TGG 0.554507 2_1:-41250316 Msa0207990:CDS
TTGGAAATTTAGCTGACAGC+GGG 0.555268 2_1:-41250385 Msa0207990:CDS
ACTAATATATGTTAATTCAA+CGG 0.555346 2_1:-41250144 Msa0207990:three_prime_UTR
TGAATTGAAGAGAAGAGAAG+AGG 0.555485 2_1:+41254577 None:intergenic
TTGTGCGGGATGCCAAAACA+GGG 0.559601 2_1:-41252499 Msa0207990:CDS
GCTTGGATTTGAATCCTCCA+AGG 0.561042 2_1:+41253734 None:intergenic
ACTGATTGATGAATGTCCTT+GGG 0.565331 2_1:+41253599 None:intergenic
ACAAGCATATCAGGTCGTCT+TGG 0.565978 2_1:+41253493 None:intergenic
TGTTAATTCTGATCCAGTTG+TGG 0.567572 2_1:-41252057 Msa0207990:CDS
AGCAAGGAAAATGGTGGTAA+CGG 0.574467 2_1:+41253549 None:intergenic
AGTCCTACCCCTAACAATCT+CGG 0.577020 2_1:+41250322 None:intergenic
AGTACAGGAGGGAATGTGGC+AGG 0.577889 2_1:-41250451 Msa0207990:CDS
TGCGTCGTGATTGGCTTGTG+CGG 0.578969 2_1:-41252514 Msa0207990:CDS
TTAGGGGTAGGACTGGGTGG+AGG 0.580415 2_1:-41250313 Msa0207990:CDS
ATAGGGAAAATTGTTCAAGA+TGG 0.583369 2_1:-41253457 Msa0207990:CDS
AAATCTTGACAAGAGCATCC+AGG 0.590317 2_1:-41252475 Msa0207990:intron
CCATGACTTTGGAGTACAGG+AGG 0.592758 2_1:-41250463 Msa0207990:CDS
TCCACTGCTTCTCAGCAGCA+AGG 0.592772 2_1:+41253533 None:intergenic
GAGCAGAGGAAGAATAGAGT+AGG 0.593628 2_1:+41250071 None:intergenic
CCTCCTGTACTCCAAAGTCA+TGG 0.597089 2_1:+41250463 None:intergenic
CAACGGGTGAAAGAGGGATA+GGG 0.600933 2_1:-41250127 Msa0207990:three_prime_UTR
GAGAACTTTAAAAGCAGCAG+GGG 0.603405 2_1:-41254727 None:intergenic
GTTGGAAAATCCTCCAAACA+TGG 0.605432 2_1:-41253772 Msa0207990:CDS
GGTTACAACTGCGACGGTGA+AGG 0.607892 2_1:-41253650 Msa0207990:CDS
AGTTGTTCAAGTAGACACTT+GGG 0.611713 2_1:-41252561 Msa0207990:CDS
TTGGAGTACAGGAGGGAATG+TGG 0.613380 2_1:-41250455 Msa0207990:CDS
AGCACCAGAGACAGATGTCA+GGG 0.622472 2_1:+41250412 None:intergenic
CACCATCACAACATCACCCA+AGG 0.625250 2_1:-41253615 Msa0207990:CDS
AGTAGACACTTGGGTTTCTG+CGG 0.630478 2_1:-41252552 Msa0207990:CDS
CATGACTTTGGAGTACAGGA+GGG 0.633124 2_1:-41250462 Msa0207990:CDS
AGAGAACTTTAAAAGCAGCA+GGG 0.637070 2_1:-41254728 None:intergenic
GATGGTGCCGAGATTGTTAG+GGG 0.638472 2_1:-41250329 Msa0207990:CDS
GTGCCGAGATTGTTAGGGGT+AGG 0.642317 2_1:-41250325 Msa0207990:CDS
AAGCCAGCGATGTGAGTGAG+TGG 0.643224 2_1:+41254635 None:intergenic
AACTGCGGTTACAACTGCGA+CGG 0.643594 2_1:-41253656 Msa0207990:CDS
TGGTTGATCGTTATCCGACG+TGG 0.644890 2_1:-41253128 Msa0207990:intron
GCAGCACCTTCCAAAATCAA+CGG 0.646470 2_1:-41253679 Msa0207990:CDS
TCATGATGAATAAACTGACA+AGG 0.652704 2_1:-41252130 Msa0207990:CDS
AAAATTCCGGAAGAGGTCAG+AGG 0.654352 2_1:-41252098 Msa0207990:CDS
CTCAGCAGCAAGGAAAATGG+TGG 0.660147 2_1:+41253543 None:intergenic
ATTGGAAATTTAGCTGACAG+CGG 0.670615 2_1:-41250386 Msa0207990:CDS
TTCCAAAATCAACGGAACTG+CGG 0.674773 2_1:-41253671 Msa0207990:CDS
TTTGACTCACTATCAGCTGG+AGG 0.685307 2_1:-41250230 Msa0207990:three_prime_UTR
TAGATCGTACGAAATAGGTG+CGG 0.735860 2_1:-41253407 Msa0207990:CDS
TGTGCGGGATGCCAAAACAG+GGG 0.744085 2_1:-41252498 Msa0207990:CDS
AAGGTTAAGACTAACCACGT+CGG 0.758321 2_1:+41253114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAACAAAAAAAAA+AGG + chr2_1:41250386-41250405 None:intergenic 10.0%
!!! TTTTTGTAATTTTCTTTTTT+GGG + chr2_1:41250537-41250556 None:intergenic 10.0%
!!! TTTTTTGTAATTTTCTTTTT+TGG + chr2_1:41250538-41250557 None:intergenic 10.0%
!!! TTGTTATTGTTTTTTTTTTT+TGG - chr2_1:41250651-41250670 Msa0207990:intron 10.0%
!!! ATTATCAATTTTTGTAAAAT+AGG + chr2_1:41252358-41252377 None:intergenic 10.0%
!!! AAATTTTAGAGAAAAAAATT+GGG + chr2_1:41253120-41253139 None:intergenic 10.0%
!!! AATTAATAATTACTTTTAGA+TGG + chr2_1:41253286-41253305 None:intergenic 10.0%
!!! ATTTAATTTTTTCTTCAAAA+TGG - chr2_1:41254653-41254672 Msa0207990:five_prime_UTR 10.0%
!!! TATTAAATTGTTGTTATATA+TGG - chr2_1:41254687-41254706 Msa0207990:five_prime_UTR 10.0%
!! TATATATATATATAACGAAG+TGG - chr2_1:41249971-41249990 Msa0207990:three_prime_UTR 15.0%
!!! TTTTTTTTTTTTTCTGTTTG+TGG - chr2_1:41250306-41250325 Msa0207990:CDS 15.0%
!!! TAATTATTTGTTTTGATAAC+AGG - chr2_1:41251389-41251408 Msa0207990:intron 15.0%
!!! TACAAACTTTTTATAAAAGT+AGG + chr2_1:41251875-41251894 None:intergenic 15.0%
!!! GAAATTTTAGAGAAAAAAAT+TGG + chr2_1:41253121-41253140 None:intergenic 15.0%
!! ACTAAACAAATAATCAAAAA+GGG + chr2_1:41254073-41254092 None:intergenic 15.0%
!! ACTAATATATGTTAATTCAA+CGG - chr2_1:41254507-41254526 Msa0207990:five_prime_UTR 15.0%
!! ATATATATATATAATCCACC+TGG + chr2_1:41249962-41249981 None:intergenic 20.0%
!!! GAGATTTTGAATTTTGAATA+TGG + chr2_1:41250111-41250130 None:intergenic 20.0%
!! TTAAGTGATTATACAAAGTT+AGG + chr2_1:41250576-41250595 None:intergenic 20.0%
!! TGTATAATCACTTAAATTCA+AGG - chr2_1:41250581-41250600 Msa0207990:intron 20.0%
!!! TTGTTTTGTAGATGTTATTA+TGG - chr2_1:41250732-41250751 Msa0207990:intron 20.0%
!!! TTTATGTAACAAATTTGTTG+TGG - chr2_1:41251342-41251361 Msa0207990:intron 20.0%
!!! TTATGTAACAAATTTGTTGT+GGG - chr2_1:41251343-41251362 Msa0207990:intron 20.0%
!!! AGCTTTATACATATGAATTT+TGG - chr2_1:41251781-41251800 Msa0207990:intron 20.0%
!!! GCTTTATACATATGAATTTT+GGG - chr2_1:41251782-41251801 Msa0207990:intron 20.0%
!!! TATGCTTGAAATTATGTTTT+TGG - chr2_1:41252010-41252029 Msa0207990:CDS 20.0%
!!! AACATTTTCAACATATCTTA+TGG + chr2_1:41252244-41252263 None:intergenic 20.0%
!! TTAATAATGTGAAGTACATT+GGG - chr2_1:41252807-41252826 Msa0207990:intron 20.0%
!! ATCTTTGATAAACAAATCAA+TGG - chr2_1:41253939-41253958 Msa0207990:intron 20.0%
!! GACTAAACAAATAATCAAAA+AGG + chr2_1:41254074-41254093 None:intergenic 20.0%
!! CTAATATATGTTAATTCAAC+GGG - chr2_1:41254508-41254527 Msa0207990:five_prime_UTR 20.0%
!! ACTTTCATTGGAAAAAAATA+AGG + chr2_1:41254718-41254737 None:intergenic 20.0%
! TAATGTTTGTTTGTGAGTTA+GGG + chr2_1:41250047-41250066 None:intergenic 25.0%
! ATAATGTTTGTTTGTGAGTT+AGG + chr2_1:41250048-41250067 None:intergenic 25.0%
!! TCATTTTCTCTCATTCTTTA+AGG - chr2_1:41250203-41250222 Msa0207990:three_prime_UTR 25.0%
! ATAATCACTTAAATTCAAGG+TGG - chr2_1:41250584-41250603 Msa0207990:intron 25.0%
! ACAACAACAAAACAACAATT+TGG + chr2_1:41250677-41250696 None:intergenic 25.0%
! TTAAATTTGAATTTGCATGC+AGG - chr2_1:41250780-41250799 Msa0207990:intron 25.0%
! GCACATTTAACAAATCAAAA+AGG + chr2_1:41251559-41251578 None:intergenic 25.0%
! ATTTAACCTAATCTTCAATC+TGG + chr2_1:41251726-41251745 None:intergenic 25.0%
! AAGATTAGGTTAAATTCTTC+TGG - chr2_1:41251731-41251750 Msa0207990:intron 25.0%
! AGATTAGGTTAAATTCTTCT+GGG - chr2_1:41251732-41251751 Msa0207990:intron 25.0%
! ACAGGGTATGAAATATAAAA+TGG - chr2_1:41251828-41251847 Msa0207990:intron 25.0%
!!! TTTTGCAATTTCTGATTTGT+TGG - chr2_1:41252468-41252487 Msa0207990:intron 25.0%
!! TTTTGATGTTTTACAGTGTT+TGG - chr2_1:41252497-41252516 Msa0207990:CDS 25.0%
!! TTTGATGTTTTACAGTGTTT+GGG - chr2_1:41252498-41252517 Msa0207990:CDS 25.0%
!! AAGGAAACTATCTAAAATTC+CGG - chr2_1:41252540-41252559 Msa0207990:CDS 25.0%
!! ACTAACTAAACTTGATGATT+CGG - chr2_1:41252633-41252652 Msa0207990:intron 25.0%
! GTTAATAATGTGAAGTACAT+TGG - chr2_1:41252806-41252825 Msa0207990:intron 25.0%
!!! ATATCCAAGGTTCTAAATAA+CGG - chr2_1:41252868-41252887 Msa0207990:intron 25.0%
!! TCATCTCTTATTTAAGTTCA+AGG + chr2_1:41253209-41253228 None:intergenic 25.0%
!!! TGTTATTTTTTGAGTGGATA+AGG + chr2_1:41253403-41253422 None:intergenic 25.0%
!!! TTGTTGTGTTATTTTTTGAG+TGG + chr2_1:41253409-41253428 None:intergenic 25.0%
! ATATCAACAGTAGAATGAAT+TGG - chr2_1:41254026-41254045 Msa0207990:intron 25.0%
! GTTTAGTCAATAAACTTATC+AGG - chr2_1:41254086-41254105 Msa0207990:intron 25.0%
!!! TCAAAATTGTTGATAGGTTT+TGG + chr2_1:41254364-41254383 None:intergenic 25.0%
! AGAACATCAAAATTGTTGAT+AGG + chr2_1:41254370-41254389 None:intergenic 25.0%
! TTCCAATTCATATATGGTTA+TGG - chr2_1:41254607-41254626 Msa0207990:five_prime_UTR 25.0%
! TACCATAACCATATATGAAT+TGG + chr2_1:41254612-41254631 None:intergenic 25.0%
TATATATATAACGAAGTGGC+TGG - chr2_1:41249975-41249994 Msa0207990:three_prime_UTR 30.0%
! CAAACATATTCCACACTTTT+TGG - chr2_1:41250130-41250149 Msa0207990:three_prime_UTR 30.0%
GAATTAGAATCCAAAAAGTG+TGG + chr2_1:41250143-41250162 None:intergenic 30.0%
! AAACAGGTCTGTATTGTTTT+TGG + chr2_1:41250165-41250184 None:intergenic 30.0%
!! TTTTGTTTCTTCTATGAAGC+TGG + chr2_1:41250275-41250294 None:intergenic 30.0%
! TTTTCTGTTTGTGGCTTTTA+AGG - chr2_1:41250315-41250334 Msa0207990:CDS 30.0%
! TTGTTGATCCTTTTGGTATA+GGG - chr2_1:41251177-41251196 Msa0207990:intron 30.0%
! ACAATTTTCCCTATACCAAA+AGG + chr2_1:41251188-41251207 None:intergenic 30.0%
ATAGGGAAAATTGTTCAAGA+TGG - chr2_1:41251194-41251213 Msa0207990:intron 30.0%
! AAGTTCTTTTTGCACATTTC+TGG + chr2_1:41251474-41251493 None:intergenic 30.0%
TGTGCAAAAAGAACTTGATA+TGG - chr2_1:41251478-41251497 Msa0207990:intron 30.0%
GTGCAAAAAGAACTTGATAT+GGG - chr2_1:41251479-41251498 Msa0207990:intron 30.0%
!! TGCTATCTCTATTTCTATCT+TGG - chr2_1:41251596-41251615 Msa0207990:intron 30.0%
! ATAGCTAAACTTTTTGTCTC+AGG - chr2_1:41251688-41251707 Msa0207990:intron 30.0%
TACCATCATAATATGTAGCT+AGG + chr2_1:41251913-41251932 None:intergenic 30.0%
AACAATTTGCAAAGTACAGA+CGG + chr2_1:41251975-41251994 None:intergenic 30.0%
AGTGAATCTATATTTGCTTC+AGG - chr2_1:41252062-41252081 Msa0207990:CDS 30.0%
GTGAATCTATATTTGCTTCA+GGG - chr2_1:41252063-41252082 Msa0207990:CDS 30.0%
TGAATCTATATTTGCTTCAG+GGG - chr2_1:41252064-41252083 Msa0207990:CDS 30.0%
GCTTGAAAGATTAAAAACAG+TGG + chr2_1:41252300-41252319 None:intergenic 30.0%
!! TCAGTTTGCTTTTGTCAAAT+CGG - chr2_1:41252385-41252404 Msa0207990:intron 30.0%
TCATGATGAATAAACTGACA+AGG - chr2_1:41252521-41252540 Msa0207990:CDS 30.0%
ACCTAAATACTCAAACTAAG+TGG - chr2_1:41253155-41253174 Msa0207990:CDS 30.0%
! ACCACTTAGTTTGAGTATTT+AGG + chr2_1:41253159-41253178 None:intergenic 30.0%
!!! TTTTTGAGTGGATAAGGATA+AGG + chr2_1:41253397-41253416 None:intergenic 30.0%
! ATCTTTTGTGATCCTATTTG+AGG + chr2_1:41253537-41253556 None:intergenic 30.0%
AATACAAGAACAGAAGAAGA+AGG + chr2_1:41253572-41253591 None:intergenic 30.0%
GAAAAGTCAGAAATTAGAAC+AGG + chr2_1:41253638-41253657 None:intergenic 30.0%
ATGACCAAGGTTTCAAAAAA+CGG + chr2_1:41253826-41253845 None:intergenic 30.0%
! TGATAGTGAGTCAAACATTT+AGG + chr2_1:41254416-41254435 None:intergenic 30.0%
! GAAAACAAGTAAGGCTTTAT+AGG + chr2_1:41254463-41254482 None:intergenic 30.0%
AGATCTCATGAAAACAAGTA+AGG + chr2_1:41254472-41254491 None:intergenic 30.0%
TCCATCTTCCAATTCATATA+TGG - chr2_1:41254601-41254620 Msa0207990:five_prime_UTR 30.0%
ACCATATATGAATTGGAAGA+TGG + chr2_1:41254605-41254624 None:intergenic 30.0%
TATATGGTTATGGTACTGTT+AGG - chr2_1:41254617-41254636 Msa0207990:five_prime_UTR 30.0%
TGAATTGAAGAGAAGAGAAG+AGG + chr2_1:41250077-41250096 None:intergenic 35.0%
CAAGAGAATAGAGTTGAAAC+AGG + chr2_1:41250181-41250200 None:intergenic 35.0%
! AGGAATAAAACGCATCGTTT+TGG + chr2_1:41250231-41250250 None:intergenic 35.0%
TGCAGGTGTAAAAATCAACA+TGG - chr2_1:41250797-41250816 Msa0207990:intron 35.0%
! GATGAAGATGATGATGTAAC+AGG + chr2_1:41250852-41250871 None:intergenic 35.0%
! AAATCCAAGCAAAGCTCTAA+TGG - chr2_1:41250930-41250949 Msa0207990:intron 35.0%
TAATCCATTAGAGCTTTGCT+TGG + chr2_1:41250937-41250956 None:intergenic 35.0%
ACTGATTGATGAATGTCCTT+GGG + chr2_1:41251055-41251074 None:intergenic 35.0%
AACTGATTGATGAATGTCCT+TGG + chr2_1:41251056-41251075 None:intergenic 35.0%
AAAGGATCAACAAGCATATC+AGG + chr2_1:41251170-41251189 None:intergenic 35.0%
!! GATATGCTTGTTGATCCTTT+TGG - chr2_1:41251170-41251189 Msa0207990:intron 35.0%
! CTTGTTGATCCTTTTGGTAT+AGG - chr2_1:41251176-41251195 Msa0207990:intron 35.0%
! ACGATCTAATCGAGAAGTTT+TGG + chr2_1:41251232-41251251 None:intergenic 35.0%
TCGATTAGATCGTACGAAAT+AGG - chr2_1:41251239-41251258 Msa0207990:intron 35.0%
GACGTTAATGAATCATTTGC+AGG - chr2_1:41251286-41251305 Msa0207990:intron 35.0%
CTTAATCATGTTAAGACTGC+CGG - chr2_1:41251420-41251439 Msa0207990:intron 35.0%
TTAATCATGTTAAGACTGCC+GGG - chr2_1:41251421-41251440 Msa0207990:intron 35.0%
! ACTTGATATGGGTTGTTACT+CGG - chr2_1:41251490-41251509 Msa0207990:intron 35.0%
ATAGCACCAGATTGAAGATT+AGG - chr2_1:41251717-41251736 Msa0207990:intron 35.0%
TTGGGATTTCCTTTGTCTTT+AGG - chr2_1:41251800-41251819 Msa0207990:intron 35.0%
TTTGTCTTTAGGCTGTTACA+GGG - chr2_1:41251811-41251830 Msa0207990:intron 35.0%
AGCCTAGCTACATATTATGA+TGG - chr2_1:41251908-41251927 Msa0207990:intron 35.0%
AAGTTGTTCAAGTAGACACT+TGG - chr2_1:41252089-41252108 Msa0207990:CDS 35.0%
AGTTGTTCAAGTAGACACTT+GGG - chr2_1:41252090-41252109 Msa0207990:CDS 35.0%
!! GTTCTGAATTGACTTTTACC+TGG + chr2_1:41252197-41252216 None:intergenic 35.0%
! ACTATCTAAAATTCCGGAAG+AGG - chr2_1:41252546-41252565 Msa0207990:CDS 35.0%
TGTTAATTCTGATCCAGTTG+TGG - chr2_1:41252594-41252613 Msa0207990:intron 35.0%
ACATCTAGATCATTCCATCT+GGG + chr2_1:41252776-41252795 None:intergenic 35.0%
AACATCTAGATCATTCCATC+TGG + chr2_1:41252777-41252796 None:intergenic 35.0%
ATAATGTGAAGTACATTGGG+TGG - chr2_1:41252810-41252829 Msa0207990:intron 35.0%
CAAATAAACCGTGTGTGTAT+TGG - chr2_1:41253349-41253368 Msa0207990:intron 35.0%
! CTATTGTGTTATTCTGCTTG+AGG + chr2_1:41253488-41253507 None:intergenic 35.0%
TGAAATCGCAAACCTCAAAT+AGG - chr2_1:41253522-41253541 Msa0207990:CDS 35.0%
AGAAATTAGAACAGGAGAAG+AGG + chr2_1:41253630-41253649 None:intergenic 35.0%
!!! CTGACTTTTCAAGTCTGTAA+CGG - chr2_1:41253648-41253667 Msa0207990:CDS 35.0%
! TTTTTGTTCTCGACGTGAAA+AGG - chr2_1:41253738-41253757 Msa0207990:CDS 35.0%
TAGTAGAGATCGTCTGAATA+AGG - chr2_1:41253903-41253922 Msa0207990:intron 35.0%
! GAATGAATTGGTCACTTTAG+AGG - chr2_1:41254038-41254057 Msa0207990:intron 35.0%
!!! ACAATCCCTTTTTGGTTAAG+CGG + chr2_1:41254112-41254131 None:intergenic 35.0%
! ATCAAACCACAATCCCTTTT+TGG + chr2_1:41254120-41254139 None:intergenic 35.0%
AGCTCATGACTTTCCAAAAT+TGG + chr2_1:41254163-41254182 None:intergenic 35.0%
ATTGGAAATTTAGCTGACAG+CGG - chr2_1:41254265-41254284 Msa0207990:intron 35.0%
TTAATTCAACGGGTGAAAGA+GGG - chr2_1:41254518-41254537 Msa0207990:five_prime_UTR 35.0%
TGTTTCTTCTATGAAGCTGG+TGG + chr2_1:41250272-41250291 None:intergenic 40.0%
GAAAGTCTCAAATGAAGCTC+AGG + chr2_1:41250436-41250455 None:intergenic 40.0%
TCATCTTCATCTGACAGTGT+TGG - chr2_1:41250861-41250880 Msa0207990:intron 40.0%
GTTGGAAAATCCTCCAAACA+TGG - chr2_1:41250879-41250898 Msa0207990:intron 40.0%
AGAACTAACTCCATGTTTGG+AGG + chr2_1:41250892-41250911 None:intergenic 40.0%
AGCAGAACTAACTCCATGTT+TGG + chr2_1:41250895-41250914 None:intergenic 40.0%
TTCCAAAATCAACGGAACTG+CGG - chr2_1:41250980-41250999 Msa0207990:intron 40.0%
TCATCAATCAGTTGCCTGAT+TGG - chr2_1:41251063-41251082 Msa0207990:intron 40.0%
AGCAAGGAAAATGGTGGTAA+CGG + chr2_1:41251105-41251124 None:intergenic 40.0%
TAGATCGTACGAAATAGGTG+CGG - chr2_1:41251244-41251263 Msa0207990:intron 40.0%
AAGGTTAAGACTAACCACGT+CGG + chr2_1:41251540-41251559 None:intergenic 40.0%
TAGAGATAGCAGCTGAACTA+AGG + chr2_1:41251587-41251606 None:intergenic 40.0%
CTGTAACAGCCTAAAGACAA+AGG + chr2_1:41251812-41251831 None:intergenic 40.0%
CTTTGTCTTTAGGCTGTTAC+AGG - chr2_1:41251810-41251829 Msa0207990:intron 40.0%
AAAATGGTATGCGTCGTGAT+TGG - chr2_1:41252128-41252147 Msa0207990:CDS 40.0%
! TGTCAAGATTTCCCCTGTTT+TGG + chr2_1:41252167-41252186 None:intergenic 40.0%
!! AAATCTTGACAAGAGCATCC+AGG - chr2_1:41252176-41252195 Msa0207990:intron 40.0%
AGTGAAGAAAGGAGCAAGAA+AGG + chr2_1:41252219-41252238 None:intergenic 40.0%
TTTCTTGCTCCTTTCTTCAC+TGG - chr2_1:41252218-41252237 Msa0207990:intron 40.0%
ATCTTATGGCCAGTGAAGAA+AGG + chr2_1:41252230-41252249 None:intergenic 40.0%
! ATCTCTATTTTCAGCCCAGA+TGG - chr2_1:41252759-41252778 Msa0207990:intron 40.0%
CTTGTAGTCAGTCATATCCA+AGG - chr2_1:41252855-41252874 Msa0207990:intron 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG - chr2_1:41252874-41252893 Msa0207990:intron 40.0%
GGACGTTGCGATACAAATAA+CGG - chr2_1:41252942-41252961 Msa0207990:intron 40.0%
GATACAAATAACGGTCTTCG+CGG - chr2_1:41252951-41252970 Msa0207990:intron 40.0%
GGATAAGGTTTGTGATCACT+TGG + chr2_1:41253382-41253401 None:intergenic 40.0%
CAACAAAATCGCAAATCGCA+AGG - chr2_1:41253423-41253442 Msa0207990:CDS 40.0%
GACGTGAAAAGGTCCAAAAA+CGG - chr2_1:41253749-41253768 Msa0207990:CDS 40.0%
AAAAGGTCCAAAAACGGTCA+CGG - chr2_1:41253755-41253774 Msa0207990:CDS 40.0%
TTCAAAAAACGGACCTGTAC+CGG + chr2_1:41253815-41253834 None:intergenic 40.0%
!!! AGGTCCGTTTTTTGAAACCT+TGG - chr2_1:41253819-41253838 Msa0207990:CDS 40.0%
GCTTAACCAAAAAGGGATTG+TGG - chr2_1:41254111-41254130 Msa0207990:intron 40.0%
TGACTTTCCAAAATTGGCTG+TGG + chr2_1:41254157-41254176 None:intergenic 40.0%
!! ATTCCATGACTTTGGAGTAC+AGG - chr2_1:41254185-41254204 Msa0207990:intron 40.0%
TTGGAAATTTAGCTGACAGC+GGG - chr2_1:41254266-41254285 Msa0207990:intron 40.0%
AACATTTAGGTGCTCTGTGA+TGG + chr2_1:41254403-41254422 None:intergenic 40.0%
ATGTTTGACTCACTATCAGC+TGG - chr2_1:41254418-41254437 Msa0207990:intron 40.0%
GTTAATTCAACGGGTGAAAG+AGG - chr2_1:41254517-41254536 Msa0207990:five_prime_UTR 40.0%
TATATAACGAAGTGGCTGGC+TGG - chr2_1:41249979-41249998 Msa0207990:three_prime_UTR 45.0%
GGAGGTGAATGAGAATGAGA+AGG + chr2_1:41250251-41250270 None:intergenic 45.0%
TTCTTCTATGAAGCTGGTGG+AGG + chr2_1:41250269-41250288 None:intergenic 45.0%
ATTCAAGGTGGTTGAGAGAG+AGG - chr2_1:41250596-41250615 Msa0207990:intron 45.0%
!! GGAGTTAGTTCTGCTAACCT+TGG - chr2_1:41250900-41250919 Msa0207990:intron 45.0%
!! GTTAGTTCTGCTAACCTTGG+AGG - chr2_1:41250903-41250922 Msa0207990:intron 45.0%
GCTTGGATTTGAATCCTCCA+AGG + chr2_1:41250920-41250939 None:intergenic 45.0%
GCAGCACCTTCCAAAATCAA+CGG - chr2_1:41250972-41250991 Msa0207990:intron 45.0%
!!! GCAGTTCCGTTGATTTTGGA+AGG + chr2_1:41250981-41251000 None:intergenic 45.0%
!!! AACCGCAGTTCCGTTGATTT+TGG + chr2_1:41250985-41251004 None:intergenic 45.0%
CTTCTCAGCAGCAAGGAAAA+TGG + chr2_1:41251114-41251133 None:intergenic 45.0%
AGCAGTGGATGATGCTTGAT+TGG - chr2_1:41251132-41251151 Msa0207990:intron 45.0%
ACAAGCATATCAGGTCGTCT+TGG + chr2_1:41251161-41251180 None:intergenic 45.0%
AGTAGACACTTGGGTTTCTG+CGG - chr2_1:41252099-41252118 Msa0207990:CDS 45.0%
GTTTCTGCGGCAGGAAAAAA+TGG - chr2_1:41252112-41252131 Msa0207990:CDS 45.0%
AAAAACAGTGGCCAGTCACA+AGG + chr2_1:41252288-41252307 None:intergenic 45.0%
AAAATTCCGGAAGAGGTCAG+AGG - chr2_1:41252553-41252572 Msa0207990:CDS 45.0%
TCGGCTGAATATATTCGCAC+TGG - chr2_1:41252652-41252671 Msa0207990:intron 45.0%
! GAAGTACATTGGGTGGATTC+TGG - chr2_1:41252817-41252836 Msa0207990:intron 45.0%
! GCGACCGTTATTTAGAACCT+TGG + chr2_1:41252875-41252894 None:intergenic 45.0%
CGTTAAGGTTGTCGCGATTT+CGG - chr2_1:41252912-41252931 Msa0207990:intron 45.0%
! GTTTGCTGCCAATACACACA+CGG + chr2_1:41253360-41253379 None:intergenic 45.0%
TGCTTGAGGTTTGCGATTTC+TGG + chr2_1:41253474-41253493 None:intergenic 45.0%
GCGTTTCGTAACGTCCATAA+CGG - chr2_1:41253701-41253720 Msa0207990:CDS 45.0%
TCACACGAAAATCGCCGTTA+TGG + chr2_1:41253718-41253737 None:intergenic 45.0%
!! CTGCCGATACCGATTTGTAA+CGG - chr2_1:41253781-41253800 Msa0207990:CDS 45.0%
TCAAAAAACGGACCTGTACC+GGG + chr2_1:41253814-41253833 None:intergenic 45.0%
ATCAGGCCGCTTAACCAAAA+AGG - chr2_1:41254103-41254122 Msa0207990:intron 45.0%
TCAGGCCGCTTAACCAAAAA+GGG - chr2_1:41254104-41254123 Msa0207990:intron 45.0%
TGAGCTGCATTCCATGACTT+TGG - chr2_1:41254177-41254196 Msa0207990:intron 45.0%
!! CATGACTTTGGAGTACAGGA+GGG - chr2_1:41254189-41254208 Msa0207990:intron 45.0%
! ATGATGGTGCCGAGATTGTT+AGG - chr2_1:41254320-41254339 Msa0207990:intron 45.0%
! TGATGGTGCCGAGATTGTTA+GGG - chr2_1:41254321-41254340 Msa0207990:intron 45.0%
AGTCCTACCCCTAACAATCT+CGG + chr2_1:41254332-41254351 None:intergenic 45.0%
AGATTGTTAGGGGTAGGACT+GGG - chr2_1:41254332-41254351 Msa0207990:intron 45.0%
TTTGACTCACTATCAGCTGG+AGG - chr2_1:41254421-41254440 Msa0207990:intron 45.0%
GAGCAGAGGAAGAATAGAGT+AGG + chr2_1:41254583-41254602 None:intergenic 45.0%
TGAATTGGAAGATGGAGCAG+AGG + chr2_1:41254597-41254616 None:intergenic 45.0%
!! TATTTATTATGTTATAATTA+TGG + chr2_1:41253064-41253083 None:intergenic 5.0%
GTGAGTGAGTGGCACAGAAT+TGG + chr2_1:41250008-41250027 None:intergenic 50.0%
AACTGCGGTTACAACTGCGA+CGG - chr2_1:41250995-41251014 Msa0207990:intron 50.0%
CACCATCACAACATCACCCA+AGG - chr2_1:41251036-41251055 Msa0207990:intron 50.0%
GTCCTTGGGTGATGTTGTGA+TGG + chr2_1:41251041-41251060 None:intergenic 50.0%
! GCAAGAAGCATGCTCCAATC+AGG + chr2_1:41251080-41251099 None:intergenic 50.0%
CTCAGCAGCAAGGAAAATGG+TGG + chr2_1:41251111-41251130 None:intergenic 50.0%
AAAGCCATCACCAAGAAGCC+CGG + chr2_1:41251442-41251461 None:intergenic 50.0%
! ATGGGTTGTTACTCGGATGC+AGG - chr2_1:41251497-41251516 Msa0207990:intron 50.0%
TGTTACTCGGATGCAGGTTG+TGG - chr2_1:41251503-41251522 Msa0207990:intron 50.0%
TGGTTGATCGTTATCCGACG+TGG - chr2_1:41251523-41251542 Msa0207990:intron 50.0%
TTGTGCGGGATGCCAAAACA+GGG - chr2_1:41252152-41252171 Msa0207990:intron 50.0%
GAATGTGCATGCCTTGTGAC+TGG - chr2_1:41252274-41252293 Msa0207990:intron 50.0%
ATCTCTCCTCTGACCTCTTC+CGG + chr2_1:41252562-41252581 None:intergenic 50.0%
TTCTGATCCAGTTGTGGACG+AGG - chr2_1:41252600-41252619 Msa0207990:intron 50.0%
CTGTTATCCTCGTCCACAAC+TGG + chr2_1:41252610-41252629 None:intergenic 50.0%
! GTACATTGGGTGGATTCTGG+AGG - chr2_1:41252820-41252839 Msa0207990:intron 50.0%
TGTCGCGATTTCGGCTGTAA+CGG - chr2_1:41252921-41252940 Msa0207990:intron 50.0%
! GTCTGTAACGGAGTCCGTAA+CGG - chr2_1:41253660-41253679 Msa0207990:CDS 50.0%
GACGTTACGAAACGCCGTTA+CGG + chr2_1:41253696-41253715 None:intergenic 50.0%
CGGCCGTTACAAATCGGTAT+CGG + chr2_1:41253787-41253806 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG + chr2_1:41253793-41253812 None:intergenic 50.0%
ATTTGTAACGGCCGCAATCC+CGG - chr2_1:41253793-41253812 Msa0207990:CDS 50.0%
AGGAGGGGTAGATATGACCA+AGG + chr2_1:41253839-41253858 None:intergenic 50.0%
AACAAGAACGCGAGATAGCG+AGG + chr2_1:41253859-41253878 None:intergenic 50.0%
! GAGTGCTCCACAGCCAATTT+TGG - chr2_1:41254147-41254166 Msa0207990:intron 50.0%
CCTCCTGTACTCCAAAGTCA+TGG + chr2_1:41254191-41254210 None:intergenic 50.0%
!! CCATGACTTTGGAGTACAGG+AGG - chr2_1:41254188-41254207 Msa0207990:intron 50.0%
TTGGAGTACAGGAGGGAATG+TGG - chr2_1:41254196-41254215 Msa0207990:intron 50.0%
AGCACCAGAGACAGATGTCA+GGG + chr2_1:41254242-41254261 None:intergenic 50.0%
!! TCTGTCTCTGGTGCTGACAT+TGG - chr2_1:41254247-41254266 Msa0207990:intron 50.0%
! CACTTGCTTCGACTCGATGA+TGG - chr2_1:41254304-41254323 Msa0207990:intron 50.0%
! GATGGTGCCGAGATTGTTAG+GGG - chr2_1:41254322-41254341 Msa0207990:intron 50.0%
GAGATTGTTAGGGGTAGGAC+TGG - chr2_1:41254331-41254350 Msa0207990:intron 50.0%
! TATCAGCTGGAGGTGCAGAT+TGG - chr2_1:41254431-41254450 Msa0207990:intron 50.0%
TCAACGGGTGAAAGAGGGAT+AGG - chr2_1:41254523-41254542 Msa0207990:five_prime_UTR 50.0%
CAACGGGTGAAAGAGGGATA+GGG - chr2_1:41254524-41254543 Msa0207990:five_prime_UTR 50.0%
AAGCCAGCGATGTGAGTGAG+TGG + chr2_1:41250019-41250038 None:intergenic 55.0%
GGTTACAACTGCGACGGTGA+AGG - chr2_1:41251001-41251020 Msa0207990:intron 55.0%
TCCTTGCTGCTGAGAAGCAG+TGG - chr2_1:41251117-41251136 Msa0207990:intron 55.0%
TCCACTGCTTCTCAGCAGCA+AGG + chr2_1:41251121-41251140 None:intergenic 55.0%
GTTAAGACTGCCGGGCTTCT+TGG - chr2_1:41251429-41251448 Msa0207990:intron 55.0%
!! GGGCTTCTTGGTGATGGCTT+TGG - chr2_1:41251441-41251460 Msa0207990:intron 55.0%
!! TGCGTCGTGATTGGCTTGTG+CGG - chr2_1:41252137-41252156 Msa0207990:CDS 55.0%
CTTGTGCGGGATGCCAAAAC+AGG - chr2_1:41252151-41252170 Msa0207990:intron 55.0%
TGTGCGGGATGCCAAAACAG+GGG - chr2_1:41252153-41252172 Msa0207990:intron 55.0%
AGGTCCAAAAACGGTCACGG+TGG - chr2_1:41253758-41253777 Msa0207990:CDS 55.0%
AGAACGCGAGATAGCGAGGA+GGG + chr2_1:41253855-41253874 None:intergenic 55.0%
AAGAACGCGAGATAGCGAGG+AGG + chr2_1:41253856-41253875 None:intergenic 55.0%
AGTACAGGAGGGAATGTGGC+AGG - chr2_1:41254200-41254219 Msa0207990:intron 55.0%
CAGTCCCTGACATCTGTCTC+TGG - chr2_1:41254235-41254254 Msa0207990:intron 55.0%
CAGCACCAGAGACAGATGTC+AGG + chr2_1:41254243-41254262 None:intergenic 55.0%
GTGCCGAGATTGTTAGGGGT+AGG - chr2_1:41254326-41254345 Msa0207990:intron 55.0%
TTGTTAGGGGTAGGACTGGG+TGG - chr2_1:41254335-41254354 Msa0207990:intron 55.0%
TTAAAAGCAGCAGGGGCGGG+CGG - chr2_1:41249931-41249950 Msa0207990:three_prime_UTR 60.0%
! GTGCCACTCACTCACATCGC+TGG - chr2_1:41250013-41250032 Msa0207990:three_prime_UTR 60.0%
!! CACTCACATCGCTGGCTTGC+TGG - chr2_1:41250021-41250040 Msa0207990:three_prime_UTR 60.0%
ACTGCCGGGCTTCTTGGTGA+TGG - chr2_1:41251435-41251454 Msa0207990:intron 60.0%
GACACTTGGGTTTCTGCGGC+AGG - chr2_1:41252103-41252122 Msa0207990:CDS 60.0%
!! GCGTCGTGATTGGCTTGTGC+GGG - chr2_1:41252138-41252157 Msa0207990:CDS 60.0%
GAGTCCGTAACGGCGTTTCG+CGG - chr2_1:41253670-41253689 Msa0207990:CDS 60.0%
! GCAGCCACCGTGACCGTTTT+TGG + chr2_1:41253765-41253784 None:intergenic 60.0%
ACGGACCTGTACCGGGATTG+CGG + chr2_1:41253807-41253826 None:intergenic 60.0%
GAACGCGAGATAGCGAGGAG+GGG + chr2_1:41253854-41253873 None:intergenic 60.0%
TTAGGGGTAGGACTGGGTGG+AGG - chr2_1:41254338-41254357 Msa0207990:intron 60.0%
TAAAAGCAGCAGGGGCGGGC+GGG - chr2_1:41249932-41249951 Msa0207990:three_prime_UTR 65.0%
TCGCGATCGCGGTCGCGTTA+AGG - chr2_1:41252897-41252916 Msa0207990:intron 65.0%
ACGGCCGCGAAACGCCGTTA+CGG + chr2_1:41253677-41253696 None:intergenic 65.0%
ACGGCGTTTCGCGGCCGTAA+CGG - chr2_1:41253679-41253698 Msa0207990:CDS 65.0%
AACGGCCGCAATCCCGGTAC+AGG - chr2_1:41253799-41253818 Msa0207990:CDS 65.0%
AACGGTCGCGGTCGCGATCG+CGG - chr2_1:41252886-41252905 Msa0207990:intron 70.0%
! CAGGGGCGGGCGGGATAGCC+AGG - chr2_1:41249941-41249960 Msa0207990:three_prime_UTR 80.0%
! GGGCGGGCGGGATAGCCAGG+TGG - chr2_1:41249944-41249963 Msa0207990:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 41249930 41254743 41249930 ID=Msa0207990;Name=Msa0207990
chr2_1 mRNA 41249930 41254743 41249930 ID=Msa0207990-mRNA-1;Parent=Msa0207990;Name=Msa0207990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=309|0.8|1|1|0.8|0.66|6|326|392
chr2_1 exon 41249930 41250525 41249930 ID=Msa0207990-mRNA-1:exon:12655;Parent=Msa0207990-mRNA-1
chr2_1 exon 41251992 41252160 41251992 ID=Msa0207990-mRNA-1:exon:12654;Parent=Msa0207990-mRNA-1
chr2_1 exon 41252476 41252589 41252476 ID=Msa0207990-mRNA-1:exon:12653;Parent=Msa0207990-mRNA-1
chr2_1 exon 41253129 41253262 41253129 ID=Msa0207990-mRNA-1:exon:12652;Parent=Msa0207990-mRNA-1
chr2_1 exon 41253366 41253871 41253366 ID=Msa0207990-mRNA-1:exon:12651;Parent=Msa0207990-mRNA-1
chr2_1 exon 41254449 41254743 41254449 ID=Msa0207990-mRNA-1:exon:12650;Parent=Msa0207990-mRNA-1
chr2_1 five_prime_UTR 41254449 41254743 41254449 ID=Msa0207990-mRNA-1:five_prime_utr;Parent=Msa0207990-mRNA-1
chr2_1 five_prime_UTR 41253858 41253871 41253858 ID=Msa0207990-mRNA-1:five_prime_utr;Parent=Msa0207990-mRNA-1
chr2_1 CDS 41253366 41253857 41253366 ID=Msa0207990-mRNA-1:cds;Parent=Msa0207990-mRNA-1
chr2_1 CDS 41253129 41253262 41253129 ID=Msa0207990-mRNA-1:cds;Parent=Msa0207990-mRNA-1
chr2_1 CDS 41252476 41252589 41252476 ID=Msa0207990-mRNA-1:cds;Parent=Msa0207990-mRNA-1
chr2_1 CDS 41251992 41252160 41251992 ID=Msa0207990-mRNA-1:cds;Parent=Msa0207990-mRNA-1
chr2_1 CDS 41250256 41250525 41250256 ID=Msa0207990-mRNA-1:cds;Parent=Msa0207990-mRNA-1
chr2_1 three_prime_UTR 41249930 41250255 41249930 ID=Msa0207990-mRNA-1:three_prime_utr;Parent=Msa0207990-mRNA-1
Gene Sequence

>Msa0207990

ATGGTTGCAACTGCTGCAACATCTTCGTTTTTTCCTGTTACATCATCATCTTCATCTGACAGTGTTGGAAAATCCTCCAAACATGGAGTTAGTTCTGCTAACCTTGGAGGATTCAAATCCAAGCAAAGCTCTAATGGATTAAACATTAAAGCAAATGCAGCACCTTCCAAAATCAACGGAACTGCGGTTACAACTGCGACGGTGAAGGTTGAAAATGATTCACCATCACAACATCACCCAAGGACATTCATCAATCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCCGTTACCACCATTTTCCTTGCTGCTGAGAAGCAGTGGATGATGCTTGATTGGAAGCCAAGACGACCTGATATGCTTGTTGATCCTTTTGGTATAGGGAAAATTGTTCAAGATGGTCTTGTGTTTCGCCAAAACTTCTCGATTAGATCGTACGAAATAGGTGCGGATAAAACTGCGTCTATAGAGACGTTAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAGACTGCCGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTTGTTACTCGGATGCAGGTTGTGGTTGATCGTTATCCGACGTGGGGTGAAGTTGTTCAAGTAGACACTTGGGTTTCTGCGGCAGGAAAAAATGGTATGCGTCGTGATTGGCTTGTGCGGGATGCCAAAACAGGGGAAATCTTGACAAGAGCATCCAGTGTTTGGGTCATGATGAATAAACTGACAAGGAAACTATCTAAAATTCCGGAAGAGGTCAGAGGAGAGATAGAGCATTATTTTGTTAATTCTGATCCAGTTGTGGACGAGGATAACAGAAAACTAACTAAACTTGATGATTCGGCTGAATATATTCGCACTGGTTTAAGTAGTGCTCCACAGCCAATTTTGGAAAGTCATGAGCTGCATTCCATGACTTTGGAGTACAGGAGGGAATGTGGCAGGAACAGTGTACTTCAGTCCCTGACATCTGTCTCTGGTGCTGACATTGGAAATTTAGCTGACAGCGGGTTTGTTGAATGCAAACACTTGCTTCGACTCGATGATGGTGCCGAGATTGTTAGGGGTAGGACTGGGTGGAGGCCAAAACCTATCAACAATTTTGATGTTCTGAATCAGTTTCCATCACAGAGCACCTAA

Protein sequence

>Msa0207990

MVATAATSSFFPVTSSSSSDSVGKSSKHGVSSANLGGFKSKQSSNGLNIKANAAPSKINGTAVTTATVKVENDSPSQHHPRTFINQLPDWSMLLAAVTTIFLAAEKQWMMLDWKPRRPDMLVDPFGIGKIVQDGLVFRQNFSIRSYEIGADKTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGEVVQVDTWVSAAGKNGMRRDWLVRDAKTGEILTRASSVWVMMNKLTRKLSKIPEEVRGEIEHYFVNSDPVVDEDNRKLTKLDDSAEYIRTGLSSAPQPILESHELHSMTLEYRRECGRNSVLQSLTSVSGADIGNLADSGFVECKHLLRLDDGAEIVRGRTGWRPKPINNFDVLNQFPSQST*