AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881270 MtrunA17_Chr2g0278661 100.000 88 0 0 1 88 1 88 2.36e-56 178
Msa0881270 MtrunA17_Chr4g0050781 80.645 93 16 1 1 91 1 93 8.29e-48 155
Msa0881270 MtrunA17_Chr4g0035001 58.333 84 34 1 1 84 1 83 2.47e-30 108
Msa0881270 MtrunA17_Chr4g0035051 56.962 79 34 0 6 84 7 85 1.04e-28 103
Msa0881270 MtrunA17_Chr4g0035031 56.250 80 35 0 6 85 7 86 9.52e-28 103
Msa0881270 MtrunA17_Chr1g0210241 46.392 97 51 1 1 96 1 97 3.75e-25 98.6
Msa0881270 MtrunA17_Chr7g0266751 46.429 84 45 0 7 90 32 115 9.42e-23 89.0
Msa0881270 MtrunA17_Chr3g0086861 42.857 84 48 0 1 84 38 121 7.34e-20 86.3
Msa0881270 MtrunA17_Chr4g0061451 41.667 84 49 0 1 84 36 119 2.64e-19 82.8
Msa0881270 MtrunA17_Chr7g0219021 46.053 76 41 0 8 83 41 116 9.52e-19 81.3
Msa0881270 MtrunA17_Chr3g0116631 47.436 78 41 0 7 84 206 283 1.54e-18 81.3
Msa0881270 MtrunA17_Chr3g0116631 36.905 84 53 0 8 91 110 193 1.48e-12 64.7
Msa0881270 MtrunA17_Chr7g0263001 47.561 82 43 0 8 89 36 117 1.69e-18 77.8
Msa0881270 MtrunA17_Chr3g0121631 50.000 76 37 1 8 83 37 111 4.96e-18 76.6
Msa0881270 MtrunA17_Chr3g0119311 45.122 82 43 1 8 87 37 118 1.06e-17 75.5
Msa0881270 MtrunA17_Chr1g0198431 41.463 82 48 0 8 89 193 274 3.40e-17 77.4
Msa0881270 MtrunA17_Chr1g0168601 40.506 79 47 0 6 84 152 230 4.50e-17 76.3
Msa0881270 MtrunA17_Chr7g0276531 48.611 72 33 1 3 70 14 85 1.35e-16 75.5
Msa0881270 MtrunA17_Chr3g0088511 37.255 102 52 2 8 97 33 134 2.22e-16 72.0
Msa0881270 MtrunA17_Chr8g0346011 44.000 75 41 1 2 76 32 105 3.61e-16 74.7
Msa0881270 MtrunA17_Chr6g0481071 39.773 88 48 1 8 90 96 183 4.54e-16 72.4
Msa0881270 MtrunA17_Chr2g0290191 39.796 98 54 2 8 105 5 97 6.88e-16 75.1
Msa0881270 MtrunA17_Chr2g0290191 31.731 104 66 2 8 111 107 205 1.31e-11 62.4
Msa0881270 MtrunA17_Chr1g0181111 46.053 76 41 0 8 83 197 272 6.93e-16 73.9
Msa0881270 MtrunA17_Chr1g0181111 37.634 93 58 0 8 100 85 177 1.19e-12 64.7
Msa0881270 MtrunA17_Chr3g0101061 39.583 96 50 2 3 95 36 126 6.96e-16 75.1
Msa0881270 MtrunA17_Chr4g0017401 39.216 102 57 3 3 101 12 111 7.66e-15 70.9
Msa0881270 MtrunA17_Chr5g0447761 36.364 110 64 3 3 111 2 106 1.25e-14 71.2
Msa0881270 MtrunA17_Chr7g0267571 40.789 76 45 0 8 83 213 288 1.55e-14 70.5
Msa0881270 MtrunA17_Chr3g0144311 44.595 74 40 1 3 76 25 97 2.18e-14 69.7
Msa0881270 MtrunA17_Chr4g0058151 41.026 78 46 0 7 84 216 293 2.56e-14 69.7
Msa0881270 MtrunA17_Chr4g0058151 37.209 86 54 0 3 88 118 203 3.16e-14 69.3
Msa0881270 MtrunA17_Chr1g0177101 39.474 76 46 0 8 83 208 283 8.40e-14 68.2
Msa0881270 MtrunA17_Chr2g0327921 35.802 81 52 0 8 88 8 88 9.13e-14 63.9
Msa0881270 MtrunA17_Chr5g0426311 41.892 74 42 1 3 76 12 84 9.25e-14 67.8
Msa0881270 MtrunA17_Chr1g0186351 38.272 81 48 1 3 83 2 80 1.26e-13 68.6
Msa0881270 MtrunA17_Chr1g0186351 35.443 79 50 1 8 86 113 190 2.65e-12 64.7
Msa0881270 MtrunA17_Chr6g0449481 33.000 100 66 1 8 107 134 232 1.30e-13 68.2
Msa0881270 MtrunA17_Chr4g0031091 37.662 77 48 0 8 84 34 110 1.40e-13 64.3
Msa0881270 MtrunA17_Chr4g0042161 42.105 76 44 0 10 85 54 129 1.67e-13 64.7
Msa0881270 MtrunA17_Chr7g0268551 41.667 72 42 0 10 81 351 422 2.00e-13 67.8
Msa0881270 MtrunA17_Chr3g0120721 34.545 110 69 1 2 108 98 207 2.26e-13 67.4
Msa0881270 MtrunA17_Chr3g0127751 41.892 74 42 1 3 76 22 94 9.47e-13 64.7
Msa0881270 MtrunA17_Chr7g0219031 42.623 61 35 0 8 68 41 101 1.30e-12 61.6
Msa0881270 MtrunA17_Chr8g0371201 39.474 76 46 0 9 84 64 139 7.98e-12 62.4
Msa0881270 MtrunA17_Chr4g0065741 33.735 83 55 0 8 90 72 154 8.22e-12 60.8
Msa0881270 MtrunA17_Chr5g0406171 32.749 171 97 4 9 172 133 292 2.59e-11 61.2
Msa0881270 MtrunA17_Chr3g0110211 44.737 76 41 1 9 83 114 189 3.15e-11 61.2
Msa0881270 MtrunA17_Chr4g0018581 40.741 81 48 0 3 83 447 527 4.87e-11 60.8
Msa0881270 MtrunA17_Chr3g0135111 32.692 104 68 1 3 106 6 107 8.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881270 AT3G26420.1 74.286 105 23 1 1 101 1 105 1.12e-46 154
Msa0881270 AT2G21660.2 62.025 79 30 0 6 84 7 85 2.44e-30 109
Msa0881270 AT2G21660.1 62.025 79 30 0 6 84 7 85 3.87e-30 109
Msa0881270 AT4G39260.3 56.818 88 37 1 1 88 1 87 4.32e-30 106
Msa0881270 AT4G39260.2 57.143 84 35 1 1 84 1 83 4.78e-28 102
Msa0881270 AT4G39260.1 57.143 84 35 1 1 84 1 83 1.54e-27 102
Msa0881270 AT4G13850.3 51.190 84 39 1 8 89 36 119 5.76e-21 84.7
Msa0881270 AT4G13850.2 51.190 84 39 1 8 89 36 119 7.21e-21 84.7
Msa0881270 AT5G04280.1 42.718 103 58 1 1 102 1 103 7.24e-21 88.2
Msa0881270 AT4G13850.4 53.247 77 36 0 8 84 36 112 8.03e-21 84.0
Msa0881270 AT4G13850.1 51.190 84 39 1 8 89 36 119 8.15e-21 84.7
Msa0881270 AT1G60650.2 40.000 105 63 0 6 110 11 115 9.14e-21 87.4
Msa0881270 AT1G60650.1 40.000 105 63 0 6 110 11 115 9.14e-21 87.4
Msa0881270 AT4G39260.4 55.072 69 30 1 1 69 1 68 1.43e-20 82.4
Msa0881270 AT5G06210.1 46.914 81 43 0 8 88 35 115 4.33e-19 80.1
Msa0881270 AT4G24770.1 46.988 83 44 0 7 89 244 326 4.75e-19 83.6
Msa0881270 AT4G24770.1 39.773 88 53 0 4 91 147 234 1.44e-15 73.9
Msa0881270 AT4G24770.2 46.988 83 44 0 7 89 244 326 4.75e-19 83.6
Msa0881270 AT4G24770.2 39.773 88 53 0 4 91 147 234 1.44e-15 73.9
Msa0881270 AT3G23830.2 45.679 81 44 0 8 88 36 116 1.57e-18 78.2
Msa0881270 AT3G23830.1 45.679 81 44 0 8 88 36 116 1.57e-18 78.2
Msa0881270 AT3G53460.1 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa0881270 AT3G53460.1 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa0881270 AT3G53460.3 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa0881270 AT3G53460.3 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa0881270 AT3G53460.2 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa0881270 AT3G53460.2 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa0881270 AT2G37220.1 45.122 82 45 0 8 89 205 286 2.23e-18 81.3
Msa0881270 AT2G37220.1 36.667 90 57 0 2 91 86 175 3.05e-14 69.7
Msa0881270 AT3G53460.4 45.122 82 45 0 8 89 279 360 2.98e-18 81.6
Msa0881270 AT1G18630.1 51.316 76 37 0 8 83 37 112 3.43e-18 77.8
Msa0881270 AT5G59865.1 40.777 103 51 1 2 94 11 113 3.46e-18 76.6
Msa0881270 AT1G33470.3 53.125 64 30 0 1 64 1 64 3.43e-17 77.0
Msa0881270 AT1G33470.2 53.125 64 30 0 1 64 1 64 4.70e-17 76.6
Msa0881270 AT1G33470.1 53.125 64 30 0 1 64 1 64 4.72e-17 76.6
Msa0881270 AT4G26650.1 39.815 108 63 1 2 109 10 115 5.72e-17 78.6
Msa0881270 AT4G26650.2 39.815 108 63 1 2 109 7 112 5.91e-17 78.2
Msa0881270 AT3G13224.2 38.235 102 60 1 8 106 110 211 1.66e-16 76.6
Msa0881270 AT1G74230.1 47.368 76 39 1 8 83 35 109 1.95e-16 75.9
Msa0881270 AT2G46780.1 46.667 75 39 1 2 76 17 90 2.30e-16 76.3
Msa0881270 AT2G46780.2 46.667 75 39 1 2 76 17 90 2.30e-16 76.3
Msa0881270 AT3G13224.3 37.864 103 61 1 8 107 101 203 2.63e-16 75.9
Msa0881270 AT1G76460.1 48.649 74 37 1 3 76 20 92 3.67e-16 75.1
Msa0881270 AT3G07810.1 37.273 110 63 3 3 111 2 106 5.52e-16 75.5
Msa0881270 AT3G07810.2 37.273 110 63 3 3 111 2 106 5.69e-16 75.5
Msa0881270 AT1G22910.1 46.575 73 38 1 1 72 7 79 9.01e-16 73.6
Msa0881270 AT1G60000.1 44.304 79 44 0 6 84 176 254 1.23e-15 73.2
Msa0881270 AT1G22910.2 46.575 73 38 1 1 72 7 79 1.28e-15 72.8
Msa0881270 AT5G55550.5 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa0881270 AT5G55550.4 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa0881270 AT5G55550.9 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa0881270 AT5G55550.7 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa0881270 AT5G55550.1 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa0881270 AT3G20930.1 40.476 84 50 0 8 91 283 366 1.44e-15 73.9
Msa0881270 AT5G55550.2 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa0881270 AT5G55550.3 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa0881270 AT5G55550.6 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa0881270 AT5G55550.11 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa0881270 AT5G47320.1 44.156 77 43 0 8 84 32 108 2.05e-15 71.6
Msa0881270 AT2G27330.1 31.915 94 64 0 9 102 23 116 2.88e-15 68.9
Msa0881270 AT4G13860.1 42.466 73 42 0 8 80 4 76 3.31e-15 68.2
Msa0881270 AT5G50250.1 43.590 78 44 0 7 84 207 284 4.29e-15 72.0
Msa0881270 AT5G50250.1 35.632 87 56 0 5 91 111 197 3.12e-13 67.0
Msa0881270 AT2G37510.1 48.649 74 38 0 8 81 35 108 6.76e-15 68.9
Msa0881270 AT1G22910.3 46.575 73 38 1 1 72 7 79 8.66e-15 71.6
Msa0881270 AT1G20880.2 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa0881270 AT1G20880.3 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa0881270 AT1G20880.1 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa0881270 AT1G73530.1 35.165 91 56 1 8 98 78 165 1.62e-14 68.9
Msa0881270 AT5G47620.1 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa0881270 AT5G47620.2 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa0881270 AT5G47620.5 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa0881270 AT1G22330.1 37.037 81 50 1 3 83 13 92 6.60e-14 68.9
Msa0881270 AT3G08000.1 46.053 76 41 0 8 83 42 117 7.55e-14 66.2
Msa0881270 AT5G53720.1 38.298 94 56 2 6 99 8 99 1.36e-13 64.3
Msa0881270 AT1G78260.1 39.189 74 44 1 3 76 13 85 1.44e-13 67.8
Msa0881270 AT3G20930.2 38.202 89 50 1 8 91 283 371 1.88e-13 68.2
Msa0881270 AT4G14300.1 37.037 81 49 1 3 83 2 80 1.89e-13 68.2
Msa0881270 AT4G14300.1 32.911 79 52 1 8 86 111 188 8.69e-11 60.5
Msa0881270 AT4G14300.2 37.037 81 49 1 3 83 2 80 1.89e-13 68.2
Msa0881270 AT4G14300.2 32.911 79 52 1 8 86 111 188 8.69e-11 60.5
Msa0881270 AT3G52380.1 34.951 103 64 2 5 106 114 214 1.98e-13 67.8
Msa0881270 AT3G52380.1 36.842 76 48 0 8 83 220 295 4.97e-13 66.6
Msa0881270 AT3G54770.3 44.595 74 40 1 3 76 13 85 2.29e-13 67.0
Msa0881270 AT3G54770.1 44.595 74 40 1 3 76 13 85 2.66e-13 66.6
Msa0881270 AT5G55550.8 43.421 76 41 1 3 78 2 75 4.67e-13 67.0
Msa0881270 AT1G78260.2 39.189 74 44 1 3 76 13 85 4.73e-13 66.2
Msa0881270 AT5G55550.10 43.421 76 41 1 3 78 2 75 5.08e-13 67.0
Msa0881270 AT5G19030.1 40.000 80 48 0 10 89 80 159 1.23e-12 63.5
Msa0881270 AT5G47620.4 40.000 70 42 0 3 72 2 71 1.39e-12 65.9
Msa0881270 AT2G21690.1 39.706 68 41 0 1 68 1 68 2.05e-12 61.6
Msa0881270 AT1G17640.2 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa0881270 AT1G17640.1 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa0881270 AT1G17640.3 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa0881270 AT3G13224.1 40.000 75 45 0 8 82 110 184 3.20e-12 63.5
Msa0881270 AT1G03457.3 38.356 73 45 0 9 81 227 299 3.64e-12 64.3
Msa0881270 AT1G03457.2 38.889 72 44 0 10 81 342 413 5.30e-12 63.9
Msa0881270 AT1G03457.1 38.889 72 44 0 10 81 333 404 6.06e-12 63.9
Msa0881270 AT5G54580.1 35.000 100 62 1 9 108 58 154 6.18e-12 61.2
Msa0881270 AT5G40490.1 35.443 79 51 0 8 86 131 209 6.31e-12 63.9
Msa0881270 AT4G34110.1 39.080 87 52 1 10 96 218 303 8.21e-12 63.5
Msa0881270 AT5G61030.2 39.344 122 70 1 8 125 41 162 1.01e-11 62.8
Msa0881270 AT5G61030.1 39.344 122 70 1 8 125 41 162 1.01e-11 62.8
Msa0881270 AT3G52150.2 40.260 77 46 0 7 83 177 253 1.06e-11 62.4
Msa0881270 AT3G52150.1 40.260 77 46 0 7 83 177 253 1.06e-11 62.4
Msa0881270 AT3G06970.1 38.272 81 49 1 3 83 8 87 1.19e-11 62.8
Msa0881270 AT5G04280.3 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa0881270 AT5G04280.4 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa0881270 AT5G04280.5 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa0881270 AT5G04280.2 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa0881270 AT5G51300.1 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa0881270 AT5G51300.2 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa0881270 AT5G51300.3 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa0881270 AT5G40490.2 35.443 79 51 0 8 86 114 192 3.50e-11 61.6
Msa0881270 AT2G33410.1 34.286 70 46 0 3 72 2 71 5.51e-11 60.8
Msa0881270 AT2G22100.1 37.209 86 53 1 3 88 159 243 5.70e-11 60.8
Msa0881270 AT3G46020.1 33.766 77 51 0 8 84 8 84 7.07e-11 57.0
Msa0881270 AT4G13860.2 44.828 58 32 0 23 80 2 59 9.24e-11 55.8

Find 79 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGGCGTTCTCGTGGTTT+TGG 0.181319 6_1:+28314909 Msa0881270:CDS
GGTGGGCGCGACAGGGATTC+TGG 0.257534 6_1:+28315278 Msa0881270:CDS
GCTCTTATGGTGGGCGCGAC+AGG 0.315939 6_1:+28315270 Msa0881270:CDS
GGGACGGTGGTGGGCGTGAC+AGG 0.342058 6_1:+28315396 Msa0881270:CDS
GTGGTGGTTGACAAATTCTC+TGG 0.342986 6_1:+28314891 Msa0881270:CDS
GGGATGGTGGTGGTCGTGAT+AGG 0.344211 6_1:+28315312 Msa0881270:CDS
GGGATGGCGGTGGTCGTGAT+AGG 0.344211 6_1:+28315333 Msa0881270:CDS
ATCTCTAGATCCTTGTGGTT+GGG 0.361996 6_1:-28315027 None:intergenic
GCATCCATCTACTCACTCTT+AGG 0.363304 6_1:+28313343 Msa0881270:five_prime_UTR
GATGAGTTTCGTTGCTTCAT+TGG 0.366302 6_1:+28314100 Msa0881270:CDS
GGGATGGTAGTGGGCGTGAC+AGG 0.381813 6_1:+28315417 Msa0881270:CDS
GGGCGTGACAGGGACGGTGG+TGG 0.384173 6_1:+28315386 Msa0881270:CDS
AGGAATGCAGATCGCTCTTA+TGG 0.388029 6_1:+28315257 Msa0881270:intron
TACATAGACATATTAGTTGC+TGG 0.388090 6_1:+28315831 Msa0881270:three_prime_UTR
GAGATGGTGGTGGGCGTGAC+AGG 0.391489 6_1:+28315375 Msa0881270:CDS
GGGATTCTGGTGGTCGTGAC+AGG 0.420547 6_1:+28315291 Msa0881270:CDS
ATGCTATCATTATTTACTGC+TGG 0.428403 6_1:+28315802 Msa0881270:three_prime_UTR
AATACCTAAGAGTGAGTAGA+TGG 0.437666 6_1:-28313347 None:intergenic
CTGAAACAGGCGCGCGCGAC+CGG 0.453707 6_1:+28313298 Msa0881270:five_prime_UTR
TCGCGTATCGTCAGTTACTT+AGG 0.457716 6_1:-28313239 None:intergenic
GGGCGTGACAGGGATGGTAG+TGG 0.458203 6_1:+28315407 Msa0881270:CDS
AGAGAGGCGGAATCTGAAAC+AGG 0.470762 6_1:+28313285 Msa0881270:five_prime_UTR
AATTGAGCTTGAGCTTGTTC+CGG 0.470775 6_1:-28313317 None:intergenic
GTGAGTCACGACCACGTTCT+CGG 0.471685 6_1:-28315064 None:intergenic
AAAGATGCATTTGAAAAGTA+CGG 0.478989 6_1:+28314157 Msa0881270:CDS
CATCTCTAGATCCTTGTGGT+TGG 0.481683 6_1:-28315028 None:intergenic
GGCGTGACAGGGACGGTGGT+GGG 0.487809 6_1:+28315387 Msa0881270:CDS
GGTGGGCGTGACAGGGACGG+TGG 0.495437 6_1:+28315383 Msa0881270:CDS
CTCTTATGGTGGGCGCGACA+GGG 0.500774 6_1:+28315271 Msa0881270:CDS
GAGTTTCGTTGCTTCATTGG+TGG 0.502387 6_1:+28314103 Msa0881270:CDS
GGATGGCGGTGGTCGTGATA+GGG 0.515261 6_1:+28315334 Msa0881270:CDS
GGCGTGACAGGGATGGTAGT+GGG 0.519906 6_1:+28315408 Msa0881270:CDS
GGCTATGAATGGAATTGACT+TGG 0.522243 6_1:+28314977 Msa0881270:CDS
AAATTCTCTGGGCGTTCTCG+TGG 0.522551 6_1:+28314903 Msa0881270:CDS
GGATGGTGGTGGTCGTGATA+GGG 0.522834 6_1:+28315313 Msa0881270:CDS
GGTCGTGACAGGGATGGTGG+TGG 0.527932 6_1:+28315302 Msa0881270:CDS
GCTTCATTGGTGGCCTTGCA+TGG 0.529203 6_1:+28314113 Msa0881270:CDS
GAGGCTATTGAGGCTATGAA+TGG 0.532703 6_1:+28314966 Msa0881270:CDS
GGTGGTGGGCGTGACAGGGA+TGG 0.543315 6_1:+28315401 Msa0881270:CDS
TTGTGTGTAGTTTCAAATGT+CGG 0.544631 6_1:+28314072 Msa0881270:intron
CGGCAAGCTTGTTGAGGCAA+AGG 0.545418 6_1:+28314177 Msa0881270:CDS
AGCAATGGAAGAGGCTATTG+AGG 0.547802 6_1:+28314956 Msa0881270:CDS
GGTGGTGGGCGTGACAGGGA+CGG 0.549943 6_1:+28315380 Msa0881270:CDS
ATTTGATGACAAGGAAGCAA+TGG 0.550117 6_1:+28314941 Msa0881270:CDS
TATCAGAAGTTGACCATGCA+AGG 0.550661 6_1:-28314126 None:intergenic
GGATGGTAGTGGGCGTGACA+GGG 0.556109 6_1:+28315418 Msa0881270:CDS
GTAGTTTCAAATGTCGGATA+CGG 0.558465 6_1:+28314078 Msa0881270:intron
GTTGCTGGATTTACAGCAGT+GGG 0.561015 6_1:+28315846 Msa0881270:three_prime_UTR
ATTTCAATAGAGCTAACGAT+TGG 0.562109 6_1:-28315736 None:intergenic
GGACGGTGGTGGGCGTGACA+GGG 0.562966 6_1:+28315397 Msa0881270:CDS
GACAGGGATCGCGATCGTGC+GGG 0.566766 6_1:+28315434 Msa0881270:CDS
TGACAGGGATCGCGATCGTG+CGG 0.569790 6_1:+28315433 Msa0881270:CDS
GGACGTGACAGAGATGGTGG+TGG 0.579527 6_1:+28315365 Msa0881270:CDS
AATGCAGATCGCTCTTATGG+TGG 0.584861 6_1:+28315260 Msa0881270:intron
GACGTGACAGAGATGGTGGT+GGG 0.586113 6_1:+28315366 Msa0881270:CDS
GGTGGTCGTGACAGGGATGG+TGG 0.589081 6_1:+28315299 Msa0881270:CDS
TGGTGGTTGACAAATTCTCT+GGG 0.595910 6_1:+28314892 Msa0881270:CDS
GGATTCTGGTGGTCGTGACA+GGG 0.596366 6_1:+28315292 Msa0881270:CDS
TGACAAGGAAGCAATGGAAG+AGG 0.600324 6_1:+28314947 Msa0881270:CDS
GGTCGTGATAGGGATGGCGG+TGG 0.600939 6_1:+28315344 Msa0881270:CDS
ATGCAGATCGCTCTTATGGT+GGG 0.607336 6_1:+28315261 Msa0881270:intron
AGATGGTGGTGGGCGTGACA+GGG 0.607423 6_1:+28315376 Msa0881270:CDS
GATGATCGTCACCGAGAACG+TGG 0.610333 6_1:+28315053 Msa0881270:CDS
TCTGGTGGTCGTGACAGGGA+TGG 0.611424 6_1:+28315296 Msa0881270:CDS
GTTTGTCACATTTGATGACA+AGG 0.613183 6_1:+28314932 Msa0881270:CDS
GGCGGTGGTCGTGATAGGGA+TGG 0.616824 6_1:+28315338 Msa0881270:CDS
AGTTGCTGGATTTACAGCAG+TGG 0.618491 6_1:+28315845 Msa0881270:three_prime_UTR
ATGAATGGAATTGACTTGGA+TGG 0.625730 6_1:+28314981 Msa0881270:CDS
GGTGGTGGTCGTGATAGGGA+TGG 0.627036 6_1:+28315317 Msa0881270:CDS
GGCGGTGGACGTGACAGAGA+TGG 0.640462 6_1:+28315359 Msa0881270:CDS
TCATCATCTCTAGATCCTTG+TGG 0.641739 6_1:-28315032 None:intergenic
GGTCGTGATAGGGATGGCGG+TGG 0.641846 6_1:+28315323 Msa0881270:CDS
GGTGGACGTGACAGAGATGG+TGG 0.651176 6_1:+28315362 Msa0881270:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.656307 6_1:+28315320 Msa0881270:CDS
GGGCGCGACAGGGATTCTGG+TGG 0.659692 6_1:+28315281 Msa0881270:CDS
ATGGAATTGACTTGGATGGA+CGG 0.661188 6_1:+28314985 Msa0881270:CDS
AAAGTACGGCAAGCTTGTTG+AGG 0.663446 6_1:+28314171 Msa0881270:CDS
GTTGATAAAGCCCAACCACA+AGG 0.676735 6_1:+28315017 Msa0881270:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.702840 6_1:+28315341 Msa0881270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATAAAATTGAAT+CGG - chr6_1:28313436-28313455 None:intergenic 10.0%
!!! TAGAAAACCAATTTTATTAT+GGG - chr6_1:28314681-28314700 None:intergenic 15.0%
!!! TAGTCATTTTTTTGGAATTT+AGG + chr6_1:28313556-28313575 Msa0881270:intron 20.0%
!!! AGTCATTTTTTTGGAATTTA+GGG + chr6_1:28313557-28313576 Msa0881270:intron 20.0%
!!! ATGTTGTTTATGTATATATG+TGG + chr6_1:28313666-28313685 Msa0881270:intron 20.0%
!!! TGTTGTTTATGTATATATGT+GGG + chr6_1:28313667-28313686 Msa0881270:intron 20.0%
!! ATTCATGTACTAGAAATTAT+GGG + chr6_1:28313734-28313753 Msa0881270:intron 20.0%
!! TATTACAATTCTCAACATTA+GGG - chr6_1:28313785-28313804 None:intergenic 20.0%
!! TTATTACAATTCTCAACATT+AGG - chr6_1:28313786-28313805 None:intergenic 20.0%
!! AATGTTGAGAATTGTAATAA+AGG + chr6_1:28313786-28313805 Msa0881270:intron 20.0%
!! ACATTTAAATTGTGTATTTG+AGG + chr6_1:28313931-28313950 Msa0881270:intron 20.0%
!! AATATTTAAATCAGCTATAG+GGG - chr6_1:28314026-28314045 None:intergenic 20.0%
!! GAATATTTAAATCAGCTATA+GGG - chr6_1:28314027-28314046 None:intergenic 20.0%
!! TGAATATTTAAATCAGCTAT+AGG - chr6_1:28314028-28314047 None:intergenic 20.0%
!!! ATAGCTGATTTAAATATTCA+AGG + chr6_1:28314028-28314047 Msa0881270:intron 20.0%
!!! CTTTTATTCATTGATAACAT+TGG + chr6_1:28314333-28314352 Msa0881270:intron 20.0%
!!! GTAGAAAACCAATTTTATTA+TGG - chr6_1:28314682-28314701 None:intergenic 20.0%
!!! TACTGAATTTATTTTGTAAG+TGG + chr6_1:28314699-28314718 Msa0881270:intron 20.0%
!! TAATCATTCATTGACATTTA+AGG + chr6_1:28314848-28314867 Msa0881270:intron 20.0%
!!! ATATTTTGATTTGCAATACT+TGG + chr6_1:28315681-28315700 Msa0881270:three_prime_UTR 20.0%
! GAATGAATGAATGAATATGT+TGG - chr6_1:28313379-28313398 None:intergenic 25.0%
!!! TTTTTTGGAATTTAGGGTTT+TGG + chr6_1:28313563-28313582 Msa0881270:intron 25.0%
!!! TTTTTGGAATTTAGGGTTTT+GGG + chr6_1:28313564-28313583 Msa0881270:intron 25.0%
!! CATTTGAGGTTAATTTGATT+GGG + chr6_1:28313636-28313655 Msa0881270:intron 25.0%
! TTTATGTATATATGTGGGAT+GGG + chr6_1:28313672-28313691 Msa0881270:intron 25.0%
! GATTCATGTACTAGAAATTA+TGG + chr6_1:28313733-28313752 Msa0881270:intron 25.0%
! TTCATGTACTAGAAATTATG+GGG + chr6_1:28313735-28313754 Msa0881270:intron 25.0%
! TGTAATAAAGGTGATGTATT+TGG + chr6_1:28313798-28313817 Msa0881270:intron 25.0%
! GTAATAAAGGTGATGTATTT+GGG + chr6_1:28313799-28313818 Msa0881270:intron 25.0%
!!! TATGATCATTTTAGGGATTT+AGG + chr6_1:28313825-28313844 Msa0881270:intron 25.0%
!!! ATGATCATTTTAGGGATTTA+GGG + chr6_1:28313826-28313845 Msa0881270:intron 25.0%
!! TATTTGAGGTGAATTTGATT+GGG + chr6_1:28313945-28313964 Msa0881270:intron 25.0%
! TTTGATTGGGTTTATTATTG+TGG + chr6_1:28313958-28313977 Msa0881270:intron 25.0%
!! TCTTGTTTATATATGTGTGA+TGG + chr6_1:28313991-28314010 Msa0881270:intron 25.0%
! CTTGTTTATATATGTGTGAT+GGG + chr6_1:28313992-28314011 Msa0881270:intron 25.0%
! AAAGATGCATTTGAAAAGTA+CGG + chr6_1:28314157-28314176 Msa0881270:CDS 25.0%
! AAAAGAAAAATCACAGAAGT+TGG - chr6_1:28314318-28314337 None:intergenic 25.0%
! TGATAACATTGGATGAAAAA+TGG + chr6_1:28314344-28314363 Msa0881270:intron 25.0%
! TCAAATTAGTCAATTCAAAC+AGG + chr6_1:28314655-28314674 Msa0881270:intron 25.0%
!!! TGATTTTTGCAGTTTTGAAT+TGG + chr6_1:28315580-28315599 Msa0881270:intron 25.0%
!!! AGTGTTCTTGGATTTTTTTA+TGG + chr6_1:28315640-28315659 Msa0881270:CDS 25.0%
!!! GTTTTGTTTTGATTCGTGTA+TGG + chr6_1:28313461-28313480 Msa0881270:intron 30.0%
!! TCATGGGTTTACTTTGATTT+TGG + chr6_1:28313487-28313506 Msa0881270:intron 30.0%
TGTAATAAAGCTACTACCTT+TGG + chr6_1:28313526-28313545 Msa0881270:intron 30.0%
GTAATAAAGCTACTACCTTT+GGG + chr6_1:28313527-28313546 Msa0881270:intron 30.0%
TAATAAAGCTACTACCTTTG+GGG + chr6_1:28313528-28313547 Msa0881270:intron 30.0%
!!! GGGTTCTTTAGTCATTTTTT+TGG + chr6_1:28313548-28313567 Msa0881270:intron 30.0%
TATCCATTTAGTTGTACACT+TGG + chr6_1:28313598-28313617 Msa0881270:intron 30.0%
TCTACTTAATTGTGCATTTG+AGG + chr6_1:28313622-28313641 Msa0881270:intron 30.0%
! GCATTTGAGGTTAATTTGAT+TGG + chr6_1:28313635-28313654 Msa0881270:intron 30.0%
GTTTATGTATATATGTGGGA+TGG + chr6_1:28313671-28313690 Msa0881270:intron 30.0%
CAAAACAAAAACCAAAACCA+TGG - chr6_1:28313714-28313733 None:intergenic 30.0%
! TTGGGTTCTATGATCATTTT+AGG + chr6_1:28313817-28313836 Msa0881270:intron 30.0%
! TGGGTTCTATGATCATTTTA+GGG + chr6_1:28313818-28313837 Msa0881270:intron 30.0%
! GTATTTGAGGTGAATTTGAT+TGG + chr6_1:28313944-28313963 Msa0881270:intron 30.0%
! TATATATGTGTGATGGGATT+TGG + chr6_1:28313998-28314017 Msa0881270:intron 30.0%
TTGAAACTACACACAATTGA+AGG - chr6_1:28314068-28314087 None:intergenic 30.0%
TTGTGTGTAGTTTCAAATGT+CGG + chr6_1:28314072-28314091 Msa0881270:intron 30.0%
AGCATGAAATTGTAACAAGA+TGG - chr6_1:28314250-28314269 None:intergenic 30.0%
AAAATCAGCATACCAAACAT+AGG + chr6_1:28314392-28314411 Msa0881270:intron 30.0%
ACTTATAGCATCTATGAAAC+AGG - chr6_1:28314536-28314555 None:intergenic 30.0%
AAACAGGCCCATAATAAAAT+TGG + chr6_1:28314671-28314690 Msa0881270:intron 30.0%
AATTATACATGGAAGGTCAA+TGG - chr6_1:28314733-28314752 None:intergenic 30.0%
AGCATACAATTATACATGGA+AGG - chr6_1:28314740-28314759 None:intergenic 30.0%
TCCATGTATAATTGTATGCT+TGG + chr6_1:28314740-28314759 Msa0881270:intron 30.0%
CCATGTATAATTGTATGCTT+GGG + chr6_1:28314741-28314760 Msa0881270:intron 30.0%
GTTATTTGTATGAGAGTGAA+AGG - chr6_1:28314774-28314793 None:intergenic 30.0%
TTAGCAAGAAAATGTGTGAT+GGG - chr6_1:28314828-28314847 None:intergenic 30.0%
ATTAGCAAGAAAATGTGTGA+TGG - chr6_1:28314829-28314848 None:intergenic 30.0%
!!! GCTAAATATTTTGAGTTAGG+TGG + chr6_1:28314872-28314891 Msa0881270:intron 30.0%
!!! AAATATTTTGAGTTAGGTGG+TGG + chr6_1:28314875-28314894 Msa0881270:intron 30.0%
! CTTTTTGCACATGTTTTTCA+TGG + chr6_1:28315537-28315556 Msa0881270:intron 30.0%
!!! TTTTTGCAGTTTTGAATTGG+AGG + chr6_1:28315583-28315602 Msa0881270:intron 30.0%
!!! TTTTGCAGTTTTGAATTGGA+GGG + chr6_1:28315584-28315603 Msa0881270:intron 30.0%
ATTTCAATAGAGCTAACGAT+TGG - chr6_1:28315739-28315758 None:intergenic 30.0%
ATGCTATCATTATTTACTGC+TGG + chr6_1:28315802-28315821 Msa0881270:three_prime_UTR 30.0%
TACATAGACATATTAGTTGC+TGG + chr6_1:28315831-28315850 Msa0881270:three_prime_UTR 30.0%
AATACCTAAGAGTGAGTAGA+TGG - chr6_1:28313350-28313369 None:intergenic 35.0%
TGATTCGTGTATGGAAATCA+TGG + chr6_1:28313470-28313489 Msa0881270:intron 35.0%
GATTCGTGTATGGAAATCAT+GGG + chr6_1:28313471-28313490 Msa0881270:intron 35.0%
AAATGACTAAAGAACCCCAA+AGG - chr6_1:28313545-28313564 None:intergenic 35.0%
GAACCAAGTGTACAACTAAA+TGG - chr6_1:28313604-28313623 None:intergenic 35.0%
TATATATGTGGGATGGGATT+TGG + chr6_1:28313678-28313697 Msa0881270:intron 35.0%
GATTTGGATATCTATAGCCA+TGG + chr6_1:28313694-28313713 Msa0881270:intron 35.0%
! GATATCTATAGCCATGGTTT+TGG + chr6_1:28313700-28313719 Msa0881270:intron 35.0%
ACTAGAAATTATGGGGTTCT+TGG + chr6_1:28313742-28313761 Msa0881270:intron 35.0%
CTAGAAATTATGGGGTTCTT+GGG + chr6_1:28313743-28313762 Msa0881270:intron 35.0%
GTAGTTTCAAATGTCGGATA+CGG + chr6_1:28314078-28314097 Msa0881270:intron 35.0%
GAAGTTGGCAAAAGTAAAGA+AGG - chr6_1:28314303-28314322 None:intergenic 35.0%
GCATACCAAACATAGGATAT+TGG + chr6_1:28314399-28314418 Msa0881270:intron 35.0%
CATCACCAATATCCTATGTT+TGG - chr6_1:28314407-28314426 None:intergenic 35.0%
CTACACTATCTATCCAAACA+TGG - chr6_1:28314430-28314449 None:intergenic 35.0%
CCCAAGCATACAATTATACA+TGG - chr6_1:28314744-28314763 None:intergenic 35.0%
AGGGGATGTATATAGTGAAA+GGG - chr6_1:28314796-28314815 None:intergenic 35.0%
! AGAAAATGTGTGATGGGAAT+GGG - chr6_1:28314822-28314841 None:intergenic 35.0%
! AAGAAAATGTGTGATGGGAA+TGG - chr6_1:28314823-28314842 None:intergenic 35.0%
!!! GGCGCTAAATATTTTGAGTT+AGG + chr6_1:28314869-28314888 Msa0881270:intron 35.0%
! GTTTGTCACATTTGATGACA+AGG + chr6_1:28314932-28314951 Msa0881270:CDS 35.0%
! ATTTGATGACAAGGAAGCAA+TGG + chr6_1:28314941-28314960 Msa0881270:CDS 35.0%
!! ATGAATGGAATTGACTTGGA+TGG + chr6_1:28314981-28315000 Msa0881270:CDS 35.0%
!! TCTTTTGATGACAGTGTTCT+TGG + chr6_1:28315628-28315647 Msa0881270:CDS 35.0%
! AATTGAGCTTGAGCTTGTTC+CGG - chr6_1:28313320-28313339 None:intergenic 40.0%
GATGAGTTTCGTTGCTTCAT+TGG + chr6_1:28314100-28314119 Msa0881270:CDS 40.0%
TATCAGAAGTTGACCATGCA+AGG - chr6_1:28314129-28314148 None:intergenic 40.0%
!! GATATTGGTGATGCCATGTT+TGG + chr6_1:28314414-28314433 Msa0881270:intron 40.0%
CAGGGGATGTATATAGTGAA+AGG - chr6_1:28314797-28314816 None:intergenic 40.0%
TGGTGGTTGACAAATTCTCT+GGG + chr6_1:28314892-28314911 Msa0881270:CDS 40.0%
GGCTATGAATGGAATTGACT+TGG + chr6_1:28314977-28314996 Msa0881270:CDS 40.0%
!! ATGGAATTGACTTGGATGGA+CGG + chr6_1:28314985-28315004 Msa0881270:CDS 40.0%
ATCTCTAGATCCTTGTGGTT+GGG - chr6_1:28315030-28315049 None:intergenic 40.0%
TCATCATCTCTAGATCCTTG+TGG - chr6_1:28315035-28315054 None:intergenic 40.0%
! TGCTTTAAGTGTGGTAAACC+CGG + chr6_1:28315143-28315162 Msa0881270:intron 40.0%
!! TAAACCCGGTCATTTTGCAA+GGG + chr6_1:28315157-28315176 Msa0881270:intron 40.0%
AGGGAAAGTAGATATAGTGG+TGG + chr6_1:28315221-28315240 Msa0881270:intron 40.0%
AGTAGATATAGTGGTGGCTA+TGG + chr6_1:28315227-28315246 Msa0881270:intron 40.0%
! TGATACCTCTAGCTTCATTG+AGG + chr6_1:28315491-28315510 Msa0881270:intron 40.0%
AAGTACCTCAATGAAGCTAG+AGG - chr6_1:28315499-28315518 None:intergenic 40.0%
TCGCGTATCGTCAGTTACTT+AGG - chr6_1:28313242-28313261 None:intergenic 45.0%
GCATCCATCTACTCACTCTT+AGG + chr6_1:28313343-28313362 Msa0881270:five_prime_UTR 45.0%
! GGGATTTAGGGTATCAGTTG+TGG + chr6_1:28313838-28313857 Msa0881270:intron 45.0%
GAGTTTCGTTGCTTCATTGG+TGG + chr6_1:28314103-28314122 Msa0881270:CDS 45.0%
!! AAAGTACGGCAAGCTTGTTG+AGG + chr6_1:28314171-28314190 Msa0881270:CDS 45.0%
GTGGTGGTTGACAAATTCTC+TGG + chr6_1:28314891-28314910 Msa0881270:CDS 45.0%
TGACAAGGAAGCAATGGAAG+AGG + chr6_1:28314947-28314966 Msa0881270:CDS 45.0%
AGCAATGGAAGAGGCTATTG+AGG + chr6_1:28314956-28314975 Msa0881270:CDS 45.0%
GAGGCTATTGAGGCTATGAA+TGG + chr6_1:28314966-28314985 Msa0881270:CDS 45.0%
! GTTGATAAAGCCCAACCACA+AGG + chr6_1:28315017-28315036 Msa0881270:CDS 45.0%
CATCTCTAGATCCTTGTGGT+TGG - chr6_1:28315031-28315050 None:intergenic 45.0%
AATCGTAGCCGAGATTATGG+AGG + chr6_1:28315095-28315114 Msa0881270:intron 45.0%
CTCGACTACCTCCATAATCT+CGG - chr6_1:28315106-28315125 None:intergenic 45.0%
GAGATTATGGAGGTAGTCGA+GGG + chr6_1:28315105-28315124 Msa0881270:intron 45.0%
!! GTAAACCCGGTCATTTTGCA+AGG + chr6_1:28315156-28315175 Msa0881270:intron 45.0%
CTCCTCTTTCTCCTTCACTA+GGG - chr6_1:28315187-28315206 None:intergenic 45.0%
GGCAGGGAAAGTAGATATAG+TGG + chr6_1:28315218-28315237 Msa0881270:intron 45.0%
AGGAATGCAGATCGCTCTTA+TGG + chr6_1:28315257-28315276 Msa0881270:intron 45.0%
AATGCAGATCGCTCTTATGG+TGG + chr6_1:28315260-28315279 Msa0881270:intron 45.0%
ATGCAGATCGCTCTTATGGT+GGG + chr6_1:28315261-28315280 Msa0881270:intron 45.0%
!! GAAGCTAGAGGTATCAACGA+TGG - chr6_1:28315487-28315506 None:intergenic 45.0%
AGTTGCTGGATTTACAGCAG+TGG + chr6_1:28315845-28315864 Msa0881270:three_prime_UTR 45.0%
GTTGCTGGATTTACAGCAGT+GGG + chr6_1:28315846-28315865 Msa0881270:three_prime_UTR 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr6_1:28313261-28313280 Msa0881270:five_prime_UTR 50.0%
! AGAGAGGCGGAATCTGAAAC+AGG + chr6_1:28313285-28313304 Msa0881270:five_prime_UTR 50.0%
AAGCCATCCTAGAGAGCTTC+TGG + chr6_1:28314565-28314584 Msa0881270:intron 50.0%
! TGTCCAGAAGCTCTCTAGGA+TGG - chr6_1:28314571-28314590 None:intergenic 50.0%
GTCATGTCCAGAAGCTCTCT+AGG - chr6_1:28314575-28314594 None:intergenic 50.0%
! TGTGATGGGAATGGGATCAG+GGG - chr6_1:28314814-28314833 None:intergenic 50.0%
! GTGTGATGGGAATGGGATCA+GGG - chr6_1:28314815-28314834 None:intergenic 50.0%
! TGTGTGATGGGAATGGGATC+AGG - chr6_1:28314816-28314835 None:intergenic 50.0%
AAATTCTCTGGGCGTTCTCG+TGG + chr6_1:28314903-28314922 Msa0881270:CDS 50.0%
CGCAATCGTAGCCGAGATTA+TGG + chr6_1:28315092-28315111 Msa0881270:intron 50.0%
CGAGATTATGGAGGTAGTCG+AGG + chr6_1:28315104-28315123 Msa0881270:intron 50.0%
! GGCGGTGAATGCTTTAAGTG+TGG + chr6_1:28315134-28315153 Msa0881270:intron 50.0%
CACTCCCTTGCAAAATGACC+GGG - chr6_1:28315164-28315183 None:intergenic 50.0%
GCACTCCCTTGCAAAATGAC+CGG - chr6_1:28315165-28315184 None:intergenic 50.0%
TGCCCTAGTGAAGGAGAAAG+AGG + chr6_1:28315182-28315201 Msa0881270:intron 50.0%
CCTCCTCTTTCTCCTTCACT+AGG - chr6_1:28315188-28315207 None:intergenic 50.0%
CCTAGTGAAGGAGAAAGAGG+AGG + chr6_1:28315185-28315204 Msa0881270:intron 50.0%
GTGAAGGAGAAAGAGGAGGA+AGG + chr6_1:28315189-28315208 Msa0881270:intron 50.0%
GGAGAAAGAGGAGGAAGGTA+TGG + chr6_1:28315194-28315213 Msa0881270:intron 50.0%
! GAAAGAGGAGGAAGGTATGG+TGG + chr6_1:28315197-28315216 Msa0881270:intron 50.0%
GAGCGATCTGCATTCCTATC+AGG - chr6_1:28315254-28315273 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGG+CGG + chr6_1:28313272-28313291 Msa0881270:five_prime_UTR 55.0%
! GCTTCATTGGTGGCCTTGCA+TGG + chr6_1:28314113-28314132 Msa0881270:CDS 55.0%
!! CGGCAAGCTTGTTGAGGCAA+AGG + chr6_1:28314177-28314196 Msa0881270:CDS 55.0%
! TCTGGGCGTTCTCGTGGTTT+TGG + chr6_1:28314909-28314928 Msa0881270:CDS 55.0%
! CTGGGCGTTCTCGTGGTTTT+GGG + chr6_1:28314910-28314929 Msa0881270:CDS 55.0%
GATGATCGTCACCGAGAACG+TGG + chr6_1:28315053-28315072 Msa0881270:CDS 55.0%
GTGAGTCACGACCACGTTCT+CGG - chr6_1:28315067-28315086 None:intergenic 55.0%
GGAGGTAGTCGAGGGTCTAA+TGG + chr6_1:28315113-28315132 Msa0881270:intron 55.0%
GGTAGTCGAGGGTCTAATGG+CGG + chr6_1:28315116-28315135 Msa0881270:intron 55.0%
! AGGAGGAAGGTATGGTGGCA+GGG + chr6_1:28315202-28315221 Msa0881270:intron 55.0%
GTGGTGGCTATGGTCCTGAT+AGG + chr6_1:28315237-28315256 Msa0881270:intron 55.0%
GGATTCTGGTGGTCGTGACA+GGG + chr6_1:28315292-28315311 Msa0881270:CDS 55.0%
!! GGATGGTGGTGGTCGTGATA+GGG + chr6_1:28315313-28315332 Msa0881270:CDS 55.0%
! GACGTGACAGAGATGGTGGT+GGG + chr6_1:28315366-28315385 Msa0881270:CDS 55.0%
CCAGATCCACGACGCTCATA+CGG - chr6_1:28315461-28315480 None:intergenic 55.0%
! TATGAGCGTCGTGGATCTGG+AGG + chr6_1:28315461-28315480 Msa0881270:intron 55.0%
!! GCAAGGGAGTGCCCTAGTGA+AGG + chr6_1:28315173-28315192 Msa0881270:intron 60.0%
! GAGGAGGAAGGTATGGTGGC+AGG + chr6_1:28315201-28315220 Msa0881270:intron 60.0%
!! CTCTTATGGTGGGCGCGACA+GGG + chr6_1:28315271-28315290 Msa0881270:CDS 60.0%
GGGATTCTGGTGGTCGTGAC+AGG + chr6_1:28315291-28315310 Msa0881270:CDS 60.0%
TCTGGTGGTCGTGACAGGGA+TGG + chr6_1:28315296-28315315 Msa0881270:CDS 60.0%
!! GGGATGGTGGTGGTCGTGAT+AGG + chr6_1:28315312-28315331 Msa0881270:CDS 60.0%
! GGTGGTGGTCGTGATAGGGA+TGG + chr6_1:28315317-28315336 Msa0881270:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr6_1:28315320-28315339 Msa0881270:CDS 60.0%
! GGATGGCGGTGGTCGTGATA+GGG + chr6_1:28315334-28315353 Msa0881270:CDS 60.0%
GGTGGTCGTGATAGGGATGG+CGG + chr6_1:28315320-28315339 Msa0881270:CDS 60.0%
GGTGGACGTGACAGAGATGG+TGG + chr6_1:28315362-28315381 Msa0881270:CDS 60.0%
! GGACGTGACAGAGATGGTGG+TGG + chr6_1:28315365-28315384 Msa0881270:CDS 60.0%
!! AGATGGTGGTGGGCGTGACA+GGG + chr6_1:28315376-28315395 Msa0881270:CDS 60.0%
GGCGTGACAGGGATGGTAGT+GGG + chr6_1:28315408-28315427 Msa0881270:CDS 60.0%
!! GGATGGTAGTGGGCGTGACA+GGG + chr6_1:28315418-28315437 Msa0881270:CDS 60.0%
TGACAGGGATCGCGATCGTG+CGG + chr6_1:28315433-28315452 Msa0881270:CDS 60.0%
! CCGTATGAGCGTCGTGGATC+TGG + chr6_1:28315458-28315477 Msa0881270:intron 60.0%
!! GCTCTTATGGTGGGCGCGAC+AGG + chr6_1:28315270-28315289 Msa0881270:CDS 65.0%
GGTGGTCGTGACAGGGATGG+TGG + chr6_1:28315299-28315318 Msa0881270:CDS 65.0%
! GGTCGTGACAGGGATGGTGG+TGG + chr6_1:28315302-28315321 Msa0881270:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr6_1:28315323-28315342 Msa0881270:CDS 65.0%
! GGGATGGCGGTGGTCGTGAT+AGG + chr6_1:28315333-28315352 Msa0881270:CDS 65.0%
GGCGGTGGTCGTGATAGGGA+TGG + chr6_1:28315338-28315357 Msa0881270:CDS 65.0%
! GGTCGTGATAGGGATGGCGG+TGG + chr6_1:28315323-28315342 Msa0881270:CDS 65.0%
GGCGGTGGACGTGACAGAGA+TGG + chr6_1:28315359-28315378 Msa0881270:CDS 65.0%
!! GAGATGGTGGTGGGCGTGAC+AGG + chr6_1:28315375-28315394 Msa0881270:CDS 65.0%
GGGCGTGACAGGGATGGTAG+TGG + chr6_1:28315407-28315426 Msa0881270:CDS 65.0%
!! GGGATGGTAGTGGGCGTGAC+AGG + chr6_1:28315417-28315436 Msa0881270:CDS 65.0%
GACAGGGATCGCGATCGTGC+GGG + chr6_1:28315434-28315453 Msa0881270:CDS 65.0%
CTGAAACAGGCGCGCGCGAC+CGG + chr6_1:28313298-28313317 Msa0881270:five_prime_UTR 70.0%
GGTGGGCGCGACAGGGATTC+TGG + chr6_1:28315278-28315297 Msa0881270:CDS 70.0%
GGGCGCGACAGGGATTCTGG+TGG + chr6_1:28315281-28315300 Msa0881270:CDS 70.0%
!! GGTGGTGGGCGTGACAGGGA+CGG + chr6_1:28315380-28315399 Msa0881270:CDS 70.0%
GGCGTGACAGGGACGGTGGT+GGG + chr6_1:28315387-28315406 Msa0881270:CDS 70.0%
!! GGACGGTGGTGGGCGTGACA+GGG + chr6_1:28315397-28315416 Msa0881270:CDS 70.0%
!! GGTGGTGGGCGTGACAGGGA+TGG + chr6_1:28315380-28315399 Msa0881270:CDS 70.0%
! GCGGGACCGTATGAGCGTCG+TGG + chr6_1:28315452-28315471 Msa0881270:intron 70.0%
GGTGGGCGTGACAGGGACGG+TGG + chr6_1:28315383-28315402 Msa0881270:CDS 75.0%
GGGCGTGACAGGGACGGTGG+TGG + chr6_1:28315386-28315405 Msa0881270:CDS 75.0%
!! GGGACGGTGGTGGGCGTGAC+AGG + chr6_1:28315396-28315415 Msa0881270:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 28313214 28315897 28313214 ID=Msa0881270;Name=Msa0881270
chr6_1 mRNA 28313214 28315897 28313214 ID=Msa0881270-mRNA-1;Parent=Msa0881270;Name=Msa0881270-mRNA-1;_AED=0.10;_eAED=0.14;_QI=157|0.5|0.6|1|0.75|0.6|5|227|192
chr6_1 exon 28313214 28313364 28313214 ID=Msa0881270-mRNA-1:exon:7120;Parent=Msa0881270-mRNA-1
chr6_1 exon 28314082 28314198 28314082 ID=Msa0881270-mRNA-1:exon:7121;Parent=Msa0881270-mRNA-1
chr6_1 exon 28314891 28315086 28314891 ID=Msa0881270-mRNA-1:exon:7122;Parent=Msa0881270-mRNA-1
chr6_1 exon 28315267 28315459 28315267 ID=Msa0881270-mRNA-1:exon:7123;Parent=Msa0881270-mRNA-1
chr6_1 exon 28315592 28315897 28315592 ID=Msa0881270-mRNA-1:exon:7124;Parent=Msa0881270-mRNA-1
chr6_1 five_prime_UTR 28313214 28313364 28313214 ID=Msa0881270-mRNA-1:five_prime_utr;Parent=Msa0881270-mRNA-1
chr6_1 five_prime_UTR 28314082 28314087 28314082 ID=Msa0881270-mRNA-1:five_prime_utr;Parent=Msa0881270-mRNA-1
chr6_1 CDS 28314088 28314198 28314088 ID=Msa0881270-mRNA-1:cds;Parent=Msa0881270-mRNA-1
chr6_1 CDS 28314891 28315086 28314891 ID=Msa0881270-mRNA-1:cds;Parent=Msa0881270-mRNA-1
chr6_1 CDS 28315267 28315459 28315267 ID=Msa0881270-mRNA-1:cds;Parent=Msa0881270-mRNA-1
chr6_1 CDS 28315592 28315670 28315592 ID=Msa0881270-mRNA-1:cds;Parent=Msa0881270-mRNA-1
chr6_1 three_prime_UTR 28315671 28315897 28315671 ID=Msa0881270-mRNA-1:three_prime_utr;Parent=Msa0881270-mRNA-1
Gene Sequence

>Msa0881270

ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACTTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGATAGGGATGGCGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGAGATGGTGGTGGGCGTGACAGGGACGGTGGTGGGCGTGACAGGGATGGTAGTGGGCGTGACAGGGATCGCGATCGTGCGGGACCTTTTGAATTGGAGGGTTTCTGTGCTGCTTCAACTTTTCTTTTGATGACAGTGTTCTTGGATTTTTTTATGGATGTATGA
Protein sequence

>Msa0881270

MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSHRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGSGRDRDRDRAGPFELEGFCAASTFLLMTVFLDFFMDV*