AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036800 MtrunA17_Chr7g0261361 95.272 423 7 2 1 411 1 422 0.0 814
Msa1036800 MtrunA17_Chr5g0395341 37.637 364 195 7 5 352 8 355 1.09e-69 225
Msa1036800 MtrunA17_Chr4g0039841 40.248 323 174 7 3 311 33 350 4.53e-55 188
Msa1036800 MtrunA17_Chr8g0388361 95.385 65 3 0 57 121 1 65 5.45e-38 131
Msa1036800 MtrunA17_Chr7g0244381 26.144 306 204 8 43 342 15 304 1.70e-23 103
Msa1036800 MtrunA17_Chr3g0139891 28.750 320 182 13 41 341 5 297 2.02e-22 99.8
Msa1036800 MtrunA17_Chr1g0157701 26.230 366 217 14 41 382 5 341 7.07e-22 98.2
Msa1036800 MtrunA17_Chr3g0125541 29.167 288 178 10 43 323 10 278 3.48e-21 95.5
Msa1036800 MtrunA17_Chr3g0131021 23.427 286 193 9 39 317 3 269 2.06e-14 74.7
Msa1036800 MtrunA17_Chr8g0385261 23.793 290 187 10 39 316 3 270 3.86e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036800 AT1G06210.1 52.406 374 158 5 1 367 1 361 1.45e-122 360
Msa1036800 AT1G06210.2 56.537 283 100 5 1 269 1 274 3.69e-98 294
Msa1036800 AT5G16880.4 41.509 318 162 5 5 310 8 313 2.28e-74 238
Msa1036800 AT5G16880.1 41.509 318 162 5 5 310 8 313 2.28e-74 238
Msa1036800 AT5G16880.2 41.509 318 162 5 5 310 8 313 2.28e-74 238
Msa1036800 AT5G16880.3 40.909 308 142 8 5 293 8 294 3.09e-66 213
Msa1036800 AT4G32760.3 28.826 281 170 10 41 310 5 266 6.77e-23 100
Msa1036800 AT4G32760.2 28.826 281 170 10 41 310 5 266 1.32e-22 100
Msa1036800 AT4G32760.1 28.826 281 170 10 41 310 5 266 1.42e-22 100
Msa1036800 AT1G21380.1 27.106 273 176 8 43 309 10 265 8.78e-22 97.8
Msa1036800 AT5G01760.1 26.855 283 182 8 42 315 26 292 3.48e-21 96.3
Msa1036800 AT1G76970.2 26.740 273 171 8 43 310 10 258 1.20e-20 94.0
Msa1036800 AT1G76970.3 26.740 273 171 8 43 310 10 258 1.20e-20 94.0
Msa1036800 AT1G76970.6 26.740 273 171 8 43 310 10 258 1.20e-20 94.0
Msa1036800 AT1G76970.1 26.740 273 171 8 43 310 10 258 1.20e-20 94.0
Msa1036800 AT3G08790.1 28.214 280 178 9 41 315 5 266 1.47e-19 91.3
Msa1036800 AT5G63640.1 23.292 322 207 10 39 342 3 302 1.69e-16 81.6
Msa1036800 AT5G63640.2 23.292 322 207 10 39 342 3 302 1.69e-16 81.6
Msa1036800 AT2G38410.1 23.607 305 194 9 43 310 13 315 6.13e-16 80.5
Msa1036800 AT1G76970.7 25.573 262 161 9 74 330 15 247 8.69e-13 70.1
Msa1036800 AT1G76970.4 25.573 262 161 9 74 330 15 247 8.69e-13 70.1

Find 116 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGAACTGGGTATCTTTC+AGG 0.073874 7_1:+73239759 None:intergenic
AAACATTATCTGAACCAAAT+TGG 0.209591 7_1:-73242341 Msa1036800:CDS
TTTCGTGCTATCCACTATTT+TGG 0.212900 7_1:+73238713 None:intergenic
AACCTATAGTTCCTTCTATA+AGG 0.217376 7_1:-73238564 Msa1036800:three_prime_UTR
TGTTGCTTCGTCGACCATTT+TGG 0.217475 7_1:+73242368 None:intergenic
TAAACTCTTCGGCGTTAATA+AGG 0.243065 7_1:+73242295 None:intergenic
CTGAGATTCATGCCCCAATT+TGG 0.268510 7_1:+73242327 None:intergenic
AAGTTTACCTTTAAAGGTTT+TGG 0.279646 7_1:+73239588 None:intergenic
GGCAGAGCCAAAACCTTTAA+AGG 0.284783 7_1:-73239595 Msa1036800:intron
AACATTATCTGAACCAAATT+GGG 0.287314 7_1:-73242340 Msa1036800:CDS
TGAGAAGGTTCTTGATGATA+TGG 0.294087 7_1:-73242142 Msa1036800:CDS
TCGGCTCATGTTGGCGCTGC+TGG 0.319679 7_1:+73242440 None:intergenic
GTTAGTGAAGGTTATGTTAT+GGG 0.320735 7_1:+73242547 None:intergenic
TATTACACGCCTACACAATA+TGG 0.323040 7_1:+73238592 None:intergenic
TGTAGCCCTGCTTCTGGAAC+TGG 0.326880 7_1:+73239747 None:intergenic
ATCACCTTCACGCCTTTCAC+TGG 0.326939 7_1:+73238848 None:intergenic
AGCTTCCACTTCACGCCTTT+CGG 0.333758 7_1:+73238881 None:intergenic
TAGGTTGATTGAGAATAATC+AGG 0.339682 7_1:-73242118 Msa1036800:CDS
AGAGCATGTAGCCCTGCTTC+TGG 0.342170 7_1:+73239741 None:intergenic
TGGATTCAGGTGTTGGTGTT+TGG 0.344888 7_1:+73242388 None:intergenic
GAAACATAGTCTTGATTTGT+TGG 0.357292 7_1:-73242211 Msa1036800:CDS
ACACCATTCGAATCCGATCT+AGG 0.360563 7_1:-73242522 Msa1036800:five_prime_UTR
TTCTTCTCTTCAGCTGATGC+TGG 0.370248 7_1:+73239678 None:intergenic
TAGGGCTTGGGGTGAGTCTC+AGG 0.372522 7_1:-73242058 Msa1036800:CDS
AGATTTAACTTTGAGTCTGC+TGG 0.388877 7_1:-73239108 Msa1036800:CDS
CTGGAACTGGGTATCTTTCA+GGG 0.403076 7_1:+73239760 None:intergenic
AAGTGTCTCTTCGTCATTTG+CGG 0.424585 7_1:+73239037 None:intergenic
ACCTATAGTTCCTTCTATAA+GGG 0.426947 7_1:-73238563 Msa1036800:three_prime_UTR
AAGTGCTTATCAACATCCTT+TGG 0.427379 7_1:-73239787 Msa1036800:CDS
GATATAATCACCCTTATAGA+AGG 0.427823 7_1:+73238553 None:intergenic
GCAATCACTCTTTCTTATCA+AGG 0.428442 7_1:-73239075 Msa1036800:CDS
TTCAGAACCGTTAAACTCTT+CGG 0.431789 7_1:+73242284 None:intergenic
TCACCTTCACGCCTTTCACT+GGG 0.442488 7_1:+73238849 None:intergenic
AGACTATGTTTCTGAACAAC+AGG 0.445577 7_1:+73242222 None:intergenic
ACCAACACCTGAATCCAAAA+TGG 0.446625 7_1:-73242382 Msa1036800:CDS
CCTGTGGTCGTCGTCGAGAT+AGG 0.448202 7_1:+73242670 None:intergenic
GAGAATAATCAGGGTGATGG+TGG 0.448384 7_1:-73242108 Msa1036800:CDS
AGGTTCTTGATGATATGGTT+AGG 0.452679 7_1:-73242137 Msa1036800:CDS
AGCAGCTTCTGACAGCTCTT+CGG 0.454162 7_1:+73238821 None:intergenic
GCAGTTGGTTTCTAAGTATG+AGG 0.459831 7_1:-73238982 Msa1036800:CDS
GACTCTGAGGCATACGGAAT+AGG 0.460079 7_1:+73239810 None:intergenic
ATTAACGCCGAAGAGTTTAA+CGG 0.462205 7_1:-73242291 Msa1036800:CDS
TCCACTTCACGCCTTTCGGA+AGG 0.464569 7_1:+73238885 None:intergenic
TCATGTTGAAACCAAAATAG+TGG 0.465440 7_1:-73238724 Msa1036800:CDS
TGTTAGTGAAGGTTATGTTA+TGG 0.469604 7_1:+73242546 None:intergenic
CTTTCTTATCAAGGAGATTG+TGG 0.471308 7_1:-73239066 Msa1036800:CDS
ATATAAGTCTGACTGAAAAC+AGG 0.472919 7_1:+73242021 None:intergenic
AGGGTTTCTGTCTGACTCCA+TGG 0.475349 7_1:-73242502 Msa1036800:exon
TGGAACTGGGTATCTTTCAG+GGG 0.477292 7_1:+73239761 None:intergenic
GGTTTCTAAGTATGAGGAGT+TGG 0.477710 7_1:-73238976 Msa1036800:CDS
CTCATTCGGTATTAGTCTTG+AGG 0.480612 7_1:+73238670 None:intergenic
GGATTAAATATCACAATCCT+CGG 0.483495 7_1:+73238530 None:intergenic
AGATACCCAGTTCCAGAAGC+AGG 0.487684 7_1:-73239753 Msa1036800:CDS
AAATCAAAGCTAGCTCAATT+CGG 0.491882 7_1:-73242477 Msa1036800:CDS
TCTCTTCAGCTGATGCTGGT+TGG 0.495094 7_1:+73239682 None:intergenic
TTCTGAAATTGCTTCTGAGA+AGG 0.500375 7_1:-73242157 Msa1036800:CDS
GACTCGTTTATCTGAGGAAG+AGG 0.501929 7_1:+73238439 None:intergenic
CGAATGGTGTTTGTTAGTGA+AGG 0.501952 7_1:+73242535 None:intergenic
ACCCTTATAGAAGGAACTAT+AGG 0.503546 7_1:+73238562 None:intergenic
CCACTTCACGCCTTTCGGAA+GGG 0.507110 7_1:+73238886 None:intergenic
TTTCAGTTGATTAGGGCTTG+GGG 0.512504 7_1:-73242069 Msa1036800:CDS
CACCATTCGAATCCGATCTA+GGG 0.514973 7_1:-73242521 Msa1036800:five_prime_UTR
AGCTAGCTTTGATTTGTCCA+TGG 0.517070 7_1:+73242485 None:intergenic
ATTACAGAGTTTGAAAGGAA+GGG 0.518353 7_1:-73239868 Msa1036800:intron
CATTGATTACAGAGTTTGAA+AGG 0.519722 7_1:-73239873 Msa1036800:intron
AGGGCTACATGCTCTTGCTC+TGG 0.521165 7_1:-73239733 Msa1036800:CDS
GATTACAGAGTTTGAAAGGA+AGG 0.525440 7_1:-73239869 Msa1036800:intron
CAATGATGAGCTGCAGCAGT+TGG 0.526001 7_1:-73238997 Msa1036800:CDS
TTACAGAGTTTGAAAGGAAG+GGG 0.533707 7_1:-73239867 Msa1036800:intron
GTCGTCGTCGAGATAGGAAT+GGG 0.535016 7_1:+73242676 None:intergenic
TCGGTATTAGTCTTGAGGCT+AGG 0.535376 7_1:+73238675 None:intergenic
GTAGCCCTGCTTCTGGAACT+GGG 0.539444 7_1:+73239748 None:intergenic
CCCTTCCGAAAGGCGTGAAG+TGG 0.547349 7_1:-73238886 Msa1036800:CDS
AATGGTCGACGAAGCAACAT+CGG 0.555458 7_1:-73242364 Msa1036800:CDS
GTGATGGTGGGAATAGAAGA+AGG 0.556106 7_1:-73242095 Msa1036800:CDS
AGGTTGATTGAGAATAATCA+GGG 0.556748 7_1:-73242117 Msa1036800:CDS
AGAATAATCAGGGTGATGGT+GGG 0.559331 7_1:-73242107 Msa1036800:CDS
GCACAAAGTGTTGACACTGC+AGG 0.562346 7_1:-73238933 Msa1036800:CDS
GATTAAATATCACAATCCTC+GGG 0.564206 7_1:+73238531 None:intergenic
CACAAAGTGTTGACACTGCA+GGG 0.565100 7_1:-73238932 Msa1036800:CDS
GCACTTGACTCTGAGGCATA+CGG 0.567301 7_1:+73239804 None:intergenic
CCTATCTCGACGACGACCAC+AGG 0.569860 7_1:-73242670 Msa1036800:five_prime_UTR
CTGTTCAAAACCCCAGTGAA+AGG 0.574003 7_1:-73238860 Msa1036800:CDS
GTCCCTGTTGATGCAACCGA+GGG 0.574251 7_1:-73238753 Msa1036800:CDS
AGCTAGCTCAATTCGGTGAG+AGG 0.574332 7_1:-73242470 Msa1036800:CDS
TGTTGCTGTCCATATTGTGT+AGG 0.576162 7_1:-73238601 Msa1036800:three_prime_UTR
GGTCGTCGTCGAGATAGGAA+TGG 0.576918 7_1:+73242675 None:intergenic
GAATCACTTGACATGACGAC+AGG 0.581911 7_1:-73239843 Msa1036800:CDS
ATTGAGAATAATCAGGGTGA+TGG 0.587995 7_1:-73242111 Msa1036800:CDS
TCTGAGGCATACGGAATAGG+TGG 0.600817 7_1:+73239813 None:intergenic
GGAACTGGGTATCTTTCAGG+GGG 0.603356 7_1:+73239762 None:intergenic
AGTTCATCATAATGTTAATG+TGG 0.605472 7_1:-73238492 Msa1036800:three_prime_UTR
GTCAGACAGAAACCCTAGAT+CGG 0.608500 7_1:+73242509 None:intergenic
CTCTAGCATATTAAATTCTG+AGG 0.609799 7_1:-73239616 Msa1036800:CDS
TTGATAAGCACTTGACTCTG+AGG 0.611483 7_1:+73239797 None:intergenic
AACCCCAGTGAAAGGCGTGA+AGG 0.616642 7_1:-73238852 Msa1036800:CDS
GCTTACGATTCGGCTCATGT+TGG 0.617537 7_1:+73242431 None:intergenic
CACCTTCACGCCTTTCACTG+GGG 0.622736 7_1:+73238850 None:intergenic
GGAAGCTTCTCAAAGTTCAG+AGG 0.623281 7_1:-73238955 Msa1036800:CDS
TGATGGTGGGAATAGAAGAA+GGG 0.626796 7_1:-73242094 Msa1036800:CDS
TGCCATGACTCGTTTATCTG+AGG 0.627116 7_1:+73238433 None:intergenic
AACATGAGCCGAATCGTAAG+CGG 0.628012 7_1:-73242429 Msa1036800:CDS
GTGGCTTTGTTGGAGGCCTG+TGG 0.628445 7_1:+73242654 None:intergenic
GATACCCAGTTCCAGAAGCA+GGG 0.631013 7_1:-73239752 Msa1036800:CDS
ATACCGAATGAGAAAAGCGA+AGG 0.631923 7_1:-73238659 Msa1036800:exon
AACCCTAGATCGGATTCGAA+TGG 0.634318 7_1:+73242519 None:intergenic
CTGTTCAAAACCCTTCCGAA+AGG 0.645153 7_1:-73238896 Msa1036800:CDS
CCCTGTTGATGCAACCGAGG+GGG 0.645872 7_1:-73238751 Msa1036800:CDS
ACATTATCTGAACCAAATTG+GGG 0.646003 7_1:-73242339 Msa1036800:CDS
AGTCCCTGTTGATGCAACCG+AGG 0.662599 7_1:-73238754 Msa1036800:CDS
ATAAGGGTGATTATATCCCG+AGG 0.666087 7_1:-73238547 Msa1036800:three_prime_UTR
GGCATGAATCTCAGAATCTG+CGG 0.695779 7_1:-73242318 Msa1036800:CDS
TGAACTACAATAATCTCACA+AGG 0.707193 7_1:+73238509 None:intergenic
TCCCTGTTGATGCAACCGAG+GGG 0.709087 7_1:-73238752 Msa1036800:CDS
TGACACTGCAGGGCATGATG+CGG 0.709885 7_1:-73238922 Msa1036800:CDS
AGAGAAGAAAGAGCATCTTG+TGG 0.719443 7_1:-73239664 Msa1036800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTACTTTTAATCTTAAA+AGG - chr7_1:73240491-73240510 Msa1036800:intron 10.0%
!!! AATTTTTTTTTTTTTTGTAG+TGG - chr7_1:73241787-73241806 Msa1036800:intron 10.0%
!!! TTTATTGGTTAAAATTCAAA+TGG - chr7_1:73239384-73239403 Msa1036800:intron 15.0%
!!! TTATTGGTTAAAATTCAAAT+GGG - chr7_1:73239385-73239404 Msa1036800:intron 15.0%
!!! TTGAAAGTTGAAATTTTTAT+AGG + chr7_1:73239432-73239451 None:intergenic 15.0%
!!! AATTTTAACATCCTTAATAA+GGG + chr7_1:73239720-73239739 None:intergenic 15.0%
!!! TAATTTTAACATCCTTAATA+AGG + chr7_1:73239721-73239740 None:intergenic 15.0%
!! TAAGGATGTTAAAATTAATT+TGG - chr7_1:73239724-73239743 Msa1036800:CDS 15.0%
!! TTTATATCTATCTACTTATT+AGG - chr7_1:73239906-73239925 Msa1036800:intron 15.0%
!! ATGGTAAAATAAAAAATAGA+AGG + chr7_1:73241183-73241202 None:intergenic 15.0%
!! TAGGAAAAAATATATTATTG+TGG + chr7_1:73241975-73241994 None:intergenic 15.0%
!! AAATTATTGTACTTTCTATT+AGG + chr7_1:73241994-73242013 None:intergenic 15.0%
!!! TTTGACTTTTTTATTTTACG+TGG + chr7_1:73238503-73238522 None:intergenic 20.0%
!!! AATTTCAACTTTCAAGTAAT+AGG - chr7_1:73239437-73239456 Msa1036800:intron 20.0%
!! TATATAGAATTCATCTTAGT+AGG - chr7_1:73239585-73239604 Msa1036800:intron 20.0%
!! AAAACCATTGAAAATTGAAA+TGG + chr7_1:73239858-73239877 None:intergenic 20.0%
!!! TGTTTAGACATTTTTGTTTT+TGG - chr7_1:73239877-73239896 Msa1036800:intron 20.0%
!! ATTAGGAATAAAAGATAGTT+GGG + chr7_1:73240341-73240360 None:intergenic 20.0%
!! AATTAGGAATAAAAGATAGT+TGG + chr7_1:73240342-73240361 None:intergenic 20.0%
!!! TTTCTTCATTACTTTTATGA+TGG - chr7_1:73240590-73240609 Msa1036800:intron 20.0%
!!! TTCTTCATTACTTTTATGAT+GGG - chr7_1:73240591-73240610 Msa1036800:intron 20.0%
!!! TTTCTTCATTACTTTTATGA+TGG - chr7_1:73240590-73240609 Msa1036800:intron 20.0%
!!! ACCTATGTTATTTGAATTAT+GGG + chr7_1:73240937-73240956 None:intergenic 20.0%
!! ATGTAAAAATATCATTTACC+AGG - chr7_1:73241072-73241091 Msa1036800:intron 20.0%
!! TGTATGATTCAAATTAATAG+CGG + chr7_1:73241232-73241251 None:intergenic 20.0%
!! TCAAAAAAGTTTACCTTTAA+AGG + chr7_1:73241556-73241575 None:intergenic 20.0%
!! AAAAATATTCAGCATAAGAA+TGG + chr7_1:73241694-73241713 None:intergenic 20.0%
!!! TTTTTTTTATCTCTTATCCA+AGG - chr7_1:73241716-73241735 Msa1036800:intron 20.0%
!!! TTTTTTTTTTTTGTAGTGGT+CGG - chr7_1:73241791-73241810 Msa1036800:intron 20.0%
!!! ACCTTGCATATATATATTTT+TGG - chr7_1:73241828-73241847 Msa1036800:intron 20.0%
!!! CCTTGCATATATATATTTTT+GGG - chr7_1:73241829-73241848 Msa1036800:intron 20.0%
!! TAAATAGATCTCAATTATCT+CGG + chr7_1:73241896-73241915 None:intergenic 20.0%
!! GATCATTAATTATTTGATCA+GGG + chr7_1:73241933-73241952 None:intergenic 20.0%
!! TGATCATTAATTATTTGATC+AGG + chr7_1:73241934-73241953 None:intergenic 20.0%
!!! TAGAAAGTACAATAATTTTG+TGG - chr7_1:73241996-73242015 Msa1036800:intron 20.0%
! AAACATTATCTGAACCAAAT+TGG - chr7_1:73238794-73238813 Msa1036800:CDS 25.0%
! AACATTATCTGAACCAAATT+GGG - chr7_1:73238795-73238814 Msa1036800:CDS 25.0%
! TTGTTGTAACATACATTACA+TGG - chr7_1:73239294-73239313 Msa1036800:intron 25.0%
! TTTGAGTGTTACAATATGTT+AGG - chr7_1:73239320-73239339 Msa1036800:intron 25.0%
! TTAGGTTTATGAGTATGTAA+AGG - chr7_1:73239338-73239357 Msa1036800:intron 25.0%
!! ACCAACATAGTTTCTTTTAT+TGG - chr7_1:73239369-73239388 Msa1036800:intron 25.0%
! ACCAATAAAAGAAACTATGT+TGG + chr7_1:73239373-73239392 None:intergenic 25.0%
! GTAATAGGATAGAATATGAT+AGG - chr7_1:73239452-73239471 Msa1036800:intron 25.0%
!! CAATCATATTTTGCATCTTT+AGG - chr7_1:73239685-73239704 Msa1036800:CDS 25.0%
! ATCTACAAGACAAATCATAA+TGG + chr7_1:73239794-73239813 None:intergenic 25.0%
! ATTGAAAATTGAAATGGACA+TGG + chr7_1:73239852-73239871 None:intergenic 25.0%
!! ATGTCCATTTCAATTTTCAA+TGG - chr7_1:73239851-73239870 Msa1036800:CDS 25.0%
!!! TATGAAGTTTTATTGGATGA+AGG + chr7_1:73239936-73239955 None:intergenic 25.0%
! TAAAACGAAAAAATGCCATA+TGG + chr7_1:73240061-73240080 None:intergenic 25.0%
! TTAAAAGAAAATTGACTGCA+TGG + chr7_1:73240449-73240468 None:intergenic 25.0%
! TTAATCTTAAAAGGCAATGT+TGG - chr7_1:73240500-73240519 Msa1036800:intron 25.0%
! TAAATCATAGTATTCGATCT+AGG + chr7_1:73240561-73240580 None:intergenic 25.0%
!! TATTTTCATTTAGTCTACCT+AGG - chr7_1:73240541-73240560 Msa1036800:intron 25.0%
!!! TTACTTTTATGATGGATTCA+AGG - chr7_1:73240753-73240772 Msa1036800:intron 25.0%
! ATATACCATTTCACTTTATC+TGG - chr7_1:73240862-73240881 Msa1036800:intron 25.0%
! ATTATGGGAGAGAAAATAAA+TGG + chr7_1:73240922-73240941 None:intergenic 25.0%
! TCCCATAATTCAAATAACAT+AGG - chr7_1:73240933-73240952 Msa1036800:intron 25.0%
!! GACCTATGTTATTTGAATTA+TGG + chr7_1:73240938-73240957 None:intergenic 25.0%
!! ATTTCAATCGAGTTTTTCTT+GGG + chr7_1:73240960-73240979 None:intergenic 25.0%
!! AATTTCAATCGAGTTTTTCT+TGG + chr7_1:73240961-73240980 None:intergenic 25.0%
! AGAAAAACTCGATTGAAATT+TGG - chr7_1:73240961-73240980 Msa1036800:intron 25.0%
!!! AAGTTTACCTTTAAAGGTTT+TGG + chr7_1:73241550-73241569 None:intergenic 25.0%
!!! TTTTGAAATTAAAGAAGTGC+TGG - chr7_1:73241570-73241589 Msa1036800:intron 25.0%
! AAAACAACAATTTATTGCTC+AGG + chr7_1:73241610-73241629 None:intergenic 25.0%
!!! TTTTTTTTTTTGTAGTGGTC+GGG - chr7_1:73241792-73241811 Msa1036800:intron 25.0%
! AAATATATATATGCAAGGTC+CGG + chr7_1:73241827-73241846 None:intergenic 25.0%
! CCCAAAAATATATATATGCA+AGG + chr7_1:73241832-73241851 None:intergenic 25.0%
!! TACAATAATTTTGTGGTTGT+AGG - chr7_1:73242003-73242022 Msa1036800:intron 25.0%
! AGTTCATCATAATGTTAATG+TGG - chr7_1:73242643-73242662 Msa1036800:five_prime_UTR 25.0%
!!! TCAAAATGAGAGCATTTTTA+AGG + chr7_1:73242675-73242694 None:intergenic 25.0%
!!! TTTATTTTACGTGGCTTTGT+TGG + chr7_1:73238494-73238513 None:intergenic 30.0%
AAAAATGGGAAAGTGATAAC+TGG + chr7_1:73238562-73238581 None:intergenic 30.0%
GTTATGGGAATGTGAAAAAT+GGG + chr7_1:73238576-73238595 None:intergenic 30.0%
TGTTATGGGAATGTGAAAAA+TGG + chr7_1:73238577-73238596 None:intergenic 30.0%
GTTAGTGAAGGTTATGTTAT+GGG + chr7_1:73238591-73238610 None:intergenic 30.0%
TGTTAGTGAAGGTTATGTTA+TGG + chr7_1:73238592-73238611 None:intergenic 30.0%
AAATCAAAGCTAGCTCAATT+CGG - chr7_1:73238658-73238677 Msa1036800:exon 30.0%
ACATTATCTGAACCAAATTG+GGG - chr7_1:73238796-73238815 Msa1036800:CDS 30.0%
!! GAAACATAGTCTTGATTTGT+TGG - chr7_1:73238924-73238943 Msa1036800:CDS 30.0%
!! TAGGTTGATTGAGAATAATC+AGG - chr7_1:73239017-73239036 Msa1036800:CDS 30.0%
! AGGTTGATTGAGAATAATCA+GGG - chr7_1:73239018-73239037 Msa1036800:CDS 30.0%
ATATAAGTCTGACTGAAAAC+AGG + chr7_1:73239117-73239136 None:intergenic 30.0%
! TGTTTTCAGTCAGACTTATA+TGG - chr7_1:73239116-73239135 Msa1036800:intron 30.0%
GGGTCTCATAAAATTATAGT+TGG - chr7_1:73239405-73239424 Msa1036800:intron 30.0%
TTAGTTAGAACTATGATGAG+AGG - chr7_1:73239611-73239630 Msa1036800:CDS 30.0%
TAGTTAGAACTATGATGAGA+GGG - chr7_1:73239612-73239631 Msa1036800:CDS 30.0%
! TATTTTGCATCTTTAGGCTT+AGG - chr7_1:73239691-73239710 Msa1036800:CDS 30.0%
TGGATCTATATAGCTACTAT+CGG + chr7_1:73239832-73239851 None:intergenic 30.0%
CATCCAATAAAACTTCATAC+CGG - chr7_1:73239937-73239956 Msa1036800:intron 30.0%
ATCCAATAAAACTTCATACC+GGG - chr7_1:73239938-73239957 Msa1036800:intron 30.0%
TTCAAGACAAATAGAAATCC+CGG + chr7_1:73239959-73239978 None:intergenic 30.0%
TATAACCAATCCCACTTAAT+GGG + chr7_1:73240122-73240141 None:intergenic 30.0%
!! ATTAAGTGGGATTGGTTATA+CGG - chr7_1:73240122-73240141 Msa1036800:intron 30.0%
AAAACTCAGTTCTTTCTTGT+TGG - chr7_1:73240205-73240224 Msa1036800:intron 30.0%
AAACTCAGTTCTTTCTTGTT+GGG - chr7_1:73240206-73240225 Msa1036800:intron 30.0%
GAAGATAGCTCAATAATTAG+AGG + chr7_1:73240259-73240278 None:intergenic 30.0%
GTAAATATGACAGATCAAGA+TGG + chr7_1:73240281-73240300 None:intergenic 30.0%
TTGATCTGTCATATTTACCA+AGG - chr7_1:73240283-73240302 Msa1036800:intron 30.0%
ATACAAGACATGACAGAATT+AGG + chr7_1:73240358-73240377 None:intergenic 30.0%
!!! TTACTTTTATGATGGGTTCA+AGG - chr7_1:73240598-73240617 Msa1036800:intron 30.0%
CATAGTAAGATTTCCAACTT+TGG - chr7_1:73240641-73240660 Msa1036800:intron 30.0%
TAAATCATAGTATTCGACCT+AGG + chr7_1:73240716-73240735 None:intergenic 30.0%
CATAGTAAGATTTCCAACTT+TGG - chr7_1:73240641-73240660 Msa1036800:intron 30.0%
ATCTATACATATCCTAAGAC+GGG + chr7_1:73240829-73240848 None:intergenic 30.0%
CATCTATACATATCCTAAGA+CGG + chr7_1:73240830-73240849 None:intergenic 30.0%
TTAGACCAGATAAAGTGAAA+TGG + chr7_1:73240870-73240889 None:intergenic 30.0%
TGGATAAGAAAATTTCATCG+AGG - chr7_1:73240981-73241000 Msa1036800:intron 30.0%
ATAAGAAAATTTCATCGAGG+AGG - chr7_1:73240984-73241003 Msa1036800:intron 30.0%
GATATCTTTCTACAGAATGT+TGG - chr7_1:73241104-73241123 Msa1036800:intron 30.0%
!! AAAATAGAAGGCGTCATATT+TGG + chr7_1:73241171-73241190 None:intergenic 30.0%
! AAATTAATAGCGGAGAGAAA+AGG + chr7_1:73241222-73241241 None:intergenic 30.0%
! CATTGATTACAGAGTTTGAA+AGG - chr7_1:73241262-73241281 Msa1036800:intron 30.0%
ATTACAGAGTTTGAAAGGAA+GGG - chr7_1:73241267-73241286 Msa1036800:intron 30.0%
CTCTAGCATATTAAATTCTG+AGG - chr7_1:73241519-73241538 Msa1036800:intron 30.0%
AACTACTTCATGATGTTTCT+TGG - chr7_1:73241633-73241652 Msa1036800:intron 30.0%
GATCCTGAAATCTATTAAAC+CGG - chr7_1:73241742-73241761 Msa1036800:intron 30.0%
! ATCAAATTTGTTTCATCCTC+CGG + chr7_1:73241764-73241783 None:intergenic 30.0%
!!! TTTTTTTTTTGTAGTGGTCG+GGG - chr7_1:73241793-73241812 Msa1036800:intron 30.0%
AATATATATATGCAAGGTCC+GGG + chr7_1:73241826-73241845 None:intergenic 30.0%
TCATGTTGAAACCAAAATAG+TGG - chr7_1:73242411-73242430 Msa1036800:CDS 30.0%
AACCTATAGTTCCTTCTATA+AGG - chr7_1:73242571-73242590 Msa1036800:five_prime_UTR 30.0%
ACCTATAGTTCCTTCTATAA+GGG - chr7_1:73242572-73242591 Msa1036800:five_prime_UTR 30.0%
GATATAATCACCCTTATAGA+AGG + chr7_1:73242585-73242604 None:intergenic 30.0%
GATTAAATATCACAATCCTC+GGG + chr7_1:73242607-73242626 None:intergenic 30.0%
GGATTAAATATCACAATCCT+CGG + chr7_1:73242608-73242627 None:intergenic 30.0%
TGAACTACAATAATCTCACA+AGG + chr7_1:73242629-73242648 None:intergenic 30.0%
TAAACTCTTCGGCGTTAATA+AGG + chr7_1:73238843-73238862 None:intergenic 35.0%
ATTAACGCCGAAGAGTTTAA+CGG - chr7_1:73238844-73238863 Msa1036800:CDS 35.0%
TTCAGAACCGTTAAACTCTT+CGG + chr7_1:73238854-73238873 None:intergenic 35.0%
! AGACTATGTTTCTGAACAAC+AGG + chr7_1:73238916-73238935 None:intergenic 35.0%
!! TTCTGAAATTGCTTCTGAGA+AGG - chr7_1:73238978-73238997 Msa1036800:CDS 35.0%
! TGAGAAGGTTCTTGATGATA+TGG - chr7_1:73238993-73239012 Msa1036800:CDS 35.0%
! AGGTTCTTGATGATATGGTT+AGG - chr7_1:73238998-73239017 Msa1036800:CDS 35.0%
ATTGAGAATAATCAGGGTGA+TGG - chr7_1:73239024-73239043 Msa1036800:CDS 35.0%
! AAGGGCTTTTCAGTTGATTA+GGG - chr7_1:73239059-73239078 Msa1036800:CDS 35.0%
! TTTTCAGTTGATTAGGGCTT+GGG - chr7_1:73239065-73239084 Msa1036800:CDS 35.0%
GAAAAACAAAGCAAGAAGGA+AGG + chr7_1:73239165-73239184 None:intergenic 35.0%
GTCTGAAAAACAAAGCAAGA+AGG + chr7_1:73239169-73239188 None:intergenic 35.0%
CACTGACACTTCTAATTGAA+GGG + chr7_1:73239261-73239280 None:intergenic 35.0%
ACCAATTATGGGTCTATTGT+AGG - chr7_1:73239662-73239681 Msa1036800:CDS 35.0%
ATATAGCTACTATCGGTACT+TGG + chr7_1:73239825-73239844 None:intergenic 35.0%
!! ATCCCGGTATGAAGTTTTAT+TGG + chr7_1:73239943-73239962 None:intergenic 35.0%
CGAAAAAATGCCATATGGTA+CGG + chr7_1:73240056-73240075 None:intergenic 35.0%
! GGAAAGGCTTTGATTGTTAT+TGG + chr7_1:73240101-73240120 None:intergenic 35.0%
GTATAACCAATCCCACTTAA+TGG + chr7_1:73240123-73240142 None:intergenic 35.0%
!! AAGATAGTTGGGTCTTATTG+TGG + chr7_1:73240330-73240349 None:intergenic 35.0%
ACCAGCAATGAAAACATGTT+CGG + chr7_1:73240419-73240438 None:intergenic 35.0%
TTCTGTAGAAAGATATCCCA+AGG + chr7_1:73241101-73241120 None:intergenic 35.0%
GATTACAGAGTTTGAAAGGA+AGG - chr7_1:73241266-73241285 Msa1036800:intron 35.0%
TTACAGAGTTTGAAAGGAAG+GGG - chr7_1:73241268-73241287 Msa1036800:intron 35.0%
AAGTGCTTATCAACATCCTT+TGG - chr7_1:73241348-73241367 Msa1036800:intron 35.0%
!! AACTAACTGCTTTTCATGCA+AGG - chr7_1:73241665-73241684 Msa1036800:intron 35.0%
TAGATTTCAGGATCTATCCT+TGG + chr7_1:73241736-73241755 None:intergenic 35.0%
ATATATATATGCAAGGTCCG+GGG + chr7_1:73241825-73241844 None:intergenic 35.0%
! AGATTTAACTTTGAGTCTGC+TGG - chr7_1:73242027-73242046 Msa1036800:CDS 35.0%
GCAATCACTCTTTCTTATCA+AGG - chr7_1:73242060-73242079 Msa1036800:CDS 35.0%
CTTTCTTATCAAGGAGATTG+TGG - chr7_1:73242069-73242088 Msa1036800:CDS 35.0%
! TTTCGTGCTATCCACTATTT+TGG + chr7_1:73242425-73242444 None:intergenic 35.0%
TATTACACGCCTACACAATA+TGG + chr7_1:73242546-73242565 None:intergenic 35.0%
ACCCTTATAGAAGGAACTAT+AGG + chr7_1:73242576-73242595 None:intergenic 35.0%
!!! ATTTTACGTGGCTTTGTTGG+AGG + chr7_1:73238491-73238510 None:intergenic 40.0%
! CGAATGGTGTTTGTTAGTGA+AGG + chr7_1:73238603-73238622 None:intergenic 40.0%
!! AGCTAGCTTTGATTTGTCCA+TGG + chr7_1:73238653-73238672 None:intergenic 40.0%
!! TCATTTTGCCGCTTACGATT+CGG + chr7_1:73238717-73238736 None:intergenic 40.0%
ACCAACACCTGAATCCAAAA+TGG - chr7_1:73238753-73238772 Msa1036800:CDS 40.0%
! ACCATTTTGGATTCAGGTGT+TGG + chr7_1:73238757-73238776 None:intergenic 40.0%
! AGAATAATCAGGGTGATGGT+GGG - chr7_1:73239028-73239047 Msa1036800:CDS 40.0%
!! TGATGGTGGGAATAGAAGAA+GGG - chr7_1:73239041-73239060 Msa1036800:CDS 40.0%
! GAAGGGCTTTTCAGTTGATT+AGG - chr7_1:73239058-73239077 Msa1036800:CDS 40.0%
! CTTTTCAGTTGATTAGGGCT+TGG - chr7_1:73239064-73239083 Msa1036800:CDS 40.0%
TTTCAGTTGATTAGGGCTTG+GGG - chr7_1:73239066-73239085 Msa1036800:CDS 40.0%
AACAAAGCAAGAAGGAAGGA+AGG + chr7_1:73239161-73239180 None:intergenic 40.0%
TGTCCAACATGTATCAGTGT+CGG + chr7_1:73239226-73239245 None:intergenic 40.0%
! GCACTGACACTTCTAATTGA+AGG + chr7_1:73239262-73239281 None:intergenic 40.0%
TGTGAGCTGTGATCAAACTA+AGG - chr7_1:73239552-73239571 Msa1036800:intron 40.0%
GTGAGCTGTGATCAAACTAA+GGG - chr7_1:73239553-73239572 Msa1036800:intron 40.0%
TGAGCTGTGATCAAACTAAG+GGG - chr7_1:73239554-73239573 Msa1036800:intron 40.0%
!! AGAGGGTGTTCTATTGATAG+AGG - chr7_1:73239629-73239648 Msa1036800:CDS 40.0%
CTATTGATAGAGGTCAGAGT+TGG - chr7_1:73239639-73239658 Msa1036800:CDS 40.0%
GTCAGAGTTGGACCAATTAT+GGG - chr7_1:73239651-73239670 Msa1036800:CDS 40.0%
GCCTACAATAGACCCATAAT+TGG + chr7_1:73239666-73239685 None:intergenic 40.0%
! GTTTGAGATTCCGTACCATA+TGG - chr7_1:73240043-73240062 Msa1036800:intron 40.0%
TCAAAGCCTTTCCCATTAAG+TGG - chr7_1:73240108-73240127 Msa1036800:intron 40.0%
CAAAGCCTTTCCCATTAAGT+GGG - chr7_1:73240109-73240128 Msa1036800:intron 40.0%
CATAGAACATGATCCATGAC+AGG + chr7_1:73240173-73240192 None:intergenic 40.0%
!! GTTGGGTCTTATTGTGGTTT+GGG + chr7_1:73240324-73240343 None:intergenic 40.0%
!! AGTTGGGTCTTATTGTGGTT+TGG + chr7_1:73240325-73240344 None:intergenic 40.0%
! ACCGAACATGTTTTCATTGC+TGG - chr7_1:73240415-73240434 Msa1036800:intron 40.0%
GTCTAGACATATCCTAAGAC+AGG + chr7_1:73240675-73240694 None:intergenic 40.0%
TATCATTTACCAGGTGACCT+TGG - chr7_1:73241081-73241100 Msa1036800:intron 40.0%
ATCATTTACCAGGTGACCTT+GGG - chr7_1:73241082-73241101 Msa1036800:intron 40.0%
TTGATAAGCACTTGACTCTG+AGG + chr7_1:73241341-73241360 None:intergenic 40.0%
!! AGAGAAGAAAGAGCATCTTG+TGG - chr7_1:73241471-73241490 Msa1036800:intron 40.0%
CCTCCGGTTTAATAGATTTC+AGG + chr7_1:73241748-73241767 None:intergenic 40.0%
CCTGAAATCTATTAAACCGG+AGG - chr7_1:73241745-73241764 Msa1036800:intron 40.0%
GTTATCTTTGAATGCAGCAG+TGG - chr7_1:73241859-73241878 Msa1036800:intron 40.0%
AAGTGTCTCTTCGTCATTTG+CGG + chr7_1:73242101-73242120 None:intergenic 40.0%
!! TGACGAAGAGACACTTTTTG+AGG - chr7_1:73242105-73242124 Msa1036800:CDS 40.0%
! GCAGTTGGTTTCTAAGTATG+AGG - chr7_1:73242153-73242172 Msa1036800:CDS 40.0%
GGTTTCTAAGTATGAGGAGT+TGG - chr7_1:73242159-73242178 Msa1036800:CDS 40.0%
!! TCACGAGTGTTTGACTTTTG+AGG + chr7_1:73242361-73242380 None:intergenic 40.0%
!! CTCATTCGGTATTAGTCTTG+AGG + chr7_1:73242468-73242487 None:intergenic 40.0%
ATACCGAATGAGAAAAGCGA+AGG - chr7_1:73242476-73242495 Msa1036800:CDS 40.0%
!! CAACCTTCGCTTTTCTCATT+CGG + chr7_1:73242482-73242501 None:intergenic 40.0%
TGTTGCTGTCCATATTGTGT+AGG - chr7_1:73242534-73242553 Msa1036800:five_prime_UTR 40.0%
ATAAGGGTGATTATATCCCG+AGG - chr7_1:73242588-73242607 Msa1036800:five_prime_UTR 40.0%
ACACCATTCGAATCCGATCT+AGG - chr7_1:73238613-73238632 Msa1036800:three_prime_UTR 45.0%
CACCATTCGAATCCGATCTA+GGG - chr7_1:73238614-73238633 Msa1036800:three_prime_UTR 45.0%
AACCCTAGATCGGATTCGAA+TGG + chr7_1:73238619-73238638 None:intergenic 45.0%
GTCAGACAGAAACCCTAGAT+CGG + chr7_1:73238629-73238648 None:intergenic 45.0%
AACATGAGCCGAATCGTAAG+CGG - chr7_1:73238706-73238725 Msa1036800:CDS 45.0%
!! TGGATTCAGGTGTTGGTGTT+TGG + chr7_1:73238750-73238769 None:intergenic 45.0%
! TCGTCGACCATTTTGGATTC+AGG + chr7_1:73238763-73238782 None:intergenic 45.0%
!! TGTTGCTTCGTCGACCATTT+TGG + chr7_1:73238770-73238789 None:intergenic 45.0%
AATGGTCGACGAAGCAACAT+CGG - chr7_1:73238771-73238790 Msa1036800:CDS 45.0%
CTGAGATTCATGCCCCAATT+TGG + chr7_1:73238811-73238830 None:intergenic 45.0%
GGCATGAATCTCAGAATCTG+CGG - chr7_1:73238817-73238836 Msa1036800:CDS 45.0%
! GAGAATAATCAGGGTGATGG+TGG - chr7_1:73239027-73239046 Msa1036800:CDS 45.0%
!! GTGATGGTGGGAATAGAAGA+AGG - chr7_1:73239040-73239059 Msa1036800:CDS 45.0%
AAGCAAGAAGGAAGGAAGGA+AGG + chr7_1:73239157-73239176 None:intergenic 45.0%
ACACCGACACTGATACATGT+TGG - chr7_1:73239220-73239239 Msa1036800:intron 45.0%
! TAATTGAAGGGCGTGTTGTC+TGG + chr7_1:73239249-73239268 None:intergenic 45.0%
GAGCTGTGATCAAACTAAGG+GGG - chr7_1:73239555-73239574 Msa1036800:intron 45.0%
AGCTGTGATCAAACTAAGGG+GGG - chr7_1:73239556-73239575 Msa1036800:intron 45.0%
GGTCAGAGTTGGACCAATTA+TGG - chr7_1:73239650-73239669 Msa1036800:CDS 45.0%
GGCTTAGGCTACCCTTATTA+AGG - chr7_1:73239706-73239725 Msa1036800:CDS 45.0%
CCAATCCCACTTAATGGGAA+AGG + chr7_1:73240117-73240136 None:intergenic 45.0%
CCTTTCCCATTAAGTGGGAT+TGG - chr7_1:73240114-73240133 Msa1036800:intron 45.0%
CATTATGTCCTGTCCTGTCA+TGG - chr7_1:73240157-73240176 Msa1036800:intron 45.0%
AACATGATCCATGACAGGAC+AGG + chr7_1:73240168-73240187 None:intergenic 45.0%
GACATATCCTAAGACAGGCT+TGG + chr7_1:73240670-73240689 None:intergenic 45.0%
! TACATATCCTAAGACGGGCT+TGG + chr7_1:73240824-73240843 None:intergenic 45.0%
ACTTCTGCAGACAAACTCTG+CGG + chr7_1:73241047-73241066 None:intergenic 45.0%
AAAGATATCCCAAGGTCACC+TGG + chr7_1:73241093-73241112 None:intergenic 45.0%
!! GAAGGCGTCATATTTGGAAG+AGG + chr7_1:73241165-73241184 None:intergenic 45.0%
! AGGAGCACAAGACTATGTCA+TGG + chr7_1:73241202-73241221 None:intergenic 45.0%
GAATCACTTGACATGACGAC+AGG - chr7_1:73241292-73241311 Msa1036800:intron 45.0%
TATCTTTCAGGGGGATCCAA+AGG + chr7_1:73241367-73241386 None:intergenic 45.0%
TGGAACTGGGTATCTTTCAG+GGG + chr7_1:73241377-73241396 None:intergenic 45.0%
CTGGAACTGGGTATCTTTCA+GGG + chr7_1:73241378-73241397 None:intergenic 45.0%
! TCTGGAACTGGGTATCTTTC+AGG + chr7_1:73241379-73241398 None:intergenic 45.0%
TTCTTCTCTTCAGCTGATGC+TGG + chr7_1:73241460-73241479 None:intergenic 45.0%
GGCAGAGCCAAAACCTTTAA+AGG - chr7_1:73241540-73241559 Msa1036800:intron 45.0%
GGAAGCTTCTCAAAGTTCAG+AGG - chr7_1:73242180-73242199 Msa1036800:CDS 45.0%
!! CACAAAGTGTTGACACTGCA+GGG - chr7_1:73242203-73242222 Msa1036800:CDS 45.0%
CTGTTCAAAACCCTTCCGAA+AGG - chr7_1:73242239-73242258 Msa1036800:CDS 45.0%
CTGTTCAAAACCCCAGTGAA+AGG - chr7_1:73242275-73242294 Msa1036800:CDS 45.0%
TTCAACATGACTAACCCCCT+CGG + chr7_1:73242401-73242420 None:intergenic 45.0%
!! TCGGTATTAGTCTTGAGGCT+AGG + chr7_1:73242463-73242482 None:intergenic 45.0%
GTCGTCGTCGAGATAGGAAT+GGG + chr7_1:73238462-73238481 None:intergenic 50.0%
AGGGTTTCTGTCTGACTCCA+TGG - chr7_1:73238633-73238652 Msa1036800:three_prime_UTR 50.0%
! AGCTAGCTCAATTCGGTGAG+AGG - chr7_1:73238665-73238684 Msa1036800:exon 50.0%
! GCTTACGATTCGGCTCATGT+TGG + chr7_1:73238707-73238726 None:intergenic 50.0%
ACAGGCTTGGAAGCCAAAGT+TGG + chr7_1:73240657-73240676 None:intergenic 50.0%
TTGGCTTCCAAGCCTGTCTT+AGG - chr7_1:73240660-73240679 Msa1036800:intron 50.0%
! TCTGAGGCATACGGAATAGG+TGG + chr7_1:73241325-73241344 None:intergenic 50.0%
!! GACTCTGAGGCATACGGAAT+AGG + chr7_1:73241328-73241347 None:intergenic 50.0%
!! GCACTTGACTCTGAGGCATA+CGG + chr7_1:73241334-73241353 None:intergenic 50.0%
GGAACTGGGTATCTTTCAGG+GGG + chr7_1:73241376-73241395 None:intergenic 50.0%
AGATACCCAGTTCCAGAAGC+AGG - chr7_1:73241382-73241401 Msa1036800:intron 50.0%
GATACCCAGTTCCAGAAGCA+GGG - chr7_1:73241383-73241402 Msa1036800:intron 50.0%
TCTCTTCAGCTGATGCTGGT+TGG + chr7_1:73241456-73241475 None:intergenic 50.0%
CAATGATGAGCTGCAGCAGT+TGG - chr7_1:73242138-73242157 Msa1036800:CDS 50.0%
!! GCACAAAGTGTTGACACTGC+AGG - chr7_1:73242202-73242221 Msa1036800:CDS 50.0%
AGCTTCCACTTCACGCCTTT+CGG + chr7_1:73242257-73242276 None:intergenic 50.0%
TCACCTTCACGCCTTTCACT+GGG + chr7_1:73242289-73242308 None:intergenic 50.0%
ATCACCTTCACGCCTTTCAC+TGG + chr7_1:73242290-73242309 None:intergenic 50.0%
AGCAGCTTCTGACAGCTCTT+CGG + chr7_1:73242317-73242336 None:intergenic 50.0%
GGTCGTCGTCGAGATAGGAA+TGG + chr7_1:73238463-73238482 None:intergenic 55.0%
GGCATGTGTTGAGCAGACCT+TGG + chr7_1:73240303-73240322 None:intergenic 55.0%
ACGGGCTTGGAAGCCAAAGT+TGG + chr7_1:73240811-73240830 None:intergenic 55.0%
TTGGCTTCCAAGCCCGTCTT+AGG - chr7_1:73240814-73240833 Msa1036800:intron 55.0%
!! GTAGCCCTGCTTCTGGAACT+GGG + chr7_1:73241390-73241409 None:intergenic 55.0%
!! TGTAGCCCTGCTTCTGGAAC+TGG + chr7_1:73241391-73241410 None:intergenic 55.0%
AGAGCATGTAGCCCTGCTTC+TGG + chr7_1:73241397-73241416 None:intergenic 55.0%
AGGGCTACATGCTCTTGCTC+TGG - chr7_1:73241402-73241421 Msa1036800:intron 55.0%
TGACACTGCAGGGCATGATG+CGG - chr7_1:73242213-73242232 Msa1036800:CDS 55.0%
CCACTTCACGCCTTTCGGAA+GGG + chr7_1:73242252-73242271 None:intergenic 55.0%
TCCACTTCACGCCTTTCGGA+AGG + chr7_1:73242253-73242272 None:intergenic 55.0%
! AACCCCAGTGAAAGGCGTGA+AGG - chr7_1:73242283-73242302 Msa1036800:CDS 55.0%
CACCTTCACGCCTTTCACTG+GGG + chr7_1:73242288-73242307 None:intergenic 55.0%
AGTCCCTGTTGATGCAACCG+AGG - chr7_1:73242381-73242400 Msa1036800:CDS 55.0%
GTCCCTGTTGATGCAACCGA+GGG - chr7_1:73242382-73242401 Msa1036800:CDS 55.0%
TCCCTGTTGATGCAACCGAG+GGG - chr7_1:73242383-73242402 Msa1036800:CDS 55.0%
CCTGTGGTCGTCGTCGAGAT+AGG + chr7_1:73238468-73238487 None:intergenic 60.0%
CCTATCTCGACGACGACCAC+AGG - chr7_1:73238465-73238484 Msa1036800:three_prime_UTR 60.0%
!! GTGGCTTTGTTGGAGGCCTG+TGG + chr7_1:73238484-73238503 None:intergenic 60.0%
TAGGGCTTGGGGTGAGTCTC+AGG - chr7_1:73239077-73239096 Msa1036800:CDS 60.0%
AGTGGTCGGGGTTTGAACCC+CGG - chr7_1:73241805-73241824 Msa1036800:intron 60.0%
! CCCTTCCGAAAGGCGTGAAG+TGG - chr7_1:73242249-73242268 Msa1036800:CDS 60.0%
CCCCCTCGGTTGCATCAACA+GGG + chr7_1:73242387-73242406 None:intergenic 60.0%
CCCTGTTGATGCAACCGAGG+GGG - chr7_1:73242384-73242403 Msa1036800:CDS 60.0%
ACCCCCTCGGTTGCATCAAC+AGG + chr7_1:73242388-73242407 None:intergenic 60.0%
TCGGCTCATGTTGGCGCTGC+TGG + chr7_1:73238698-73238717 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 73238448 73242709 73238448 ID=Msa1036800;Name=Msa1036800
chr7_1 mRNA 73238448 73242709 73238448 ID=Msa1036800-mRNA-1;Parent=Msa1036800;Name=Msa1036800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|1|1|3|223|411
chr7_1 exon 73238448 73239132 73238448 ID=Msa1036800-mRNA-1:exon:17989;Parent=Msa1036800-mRNA-1
chr7_1 exon 73239596 73239883 73239596 ID=Msa1036800-mRNA-1:exon:17988;Parent=Msa1036800-mRNA-1
chr7_1 exon 73242020 73242709 73242020 ID=Msa1036800-mRNA-1:exon:17987;Parent=Msa1036800-mRNA-1
chr7_1 five_prime_UTR 73242506 73242709 73242506 ID=Msa1036800-mRNA-1:five_prime_utr;Parent=Msa1036800-mRNA-1
chr7_1 CDS 73242020 73242505 73242020 ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1 CDS 73239596 73239883 73239596 ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1 CDS 73238671 73239132 73238671 ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1 three_prime_UTR 73238448 73238670 73238448 ID=Msa1036800-mRNA-1:three_prime_utr;Parent=Msa1036800-mRNA-1
Gene Sequence

>Msa1036800

ATGGACAAATCAAAGCTAGCTCAATTCGGTGAGAGGCTCAAAACCAGCAGCGCCAACATGAGCCGAATCGTAAGCGGCAAAATGAAAGAAATTCTCCAAACACCAACACCTGAATCCAAAATGGTCGACGAAGCAACATCGGAAACATTATCTGAACCAAATTGGGGCATGAATCTCAGAATCTGCGGCCTTATTAACGCCGAAGAGTTTAACGGTTCTGAAATAGTGAAAGCTATTAAGAGAAAGATTAATCATAAGAGTCCTGTTGTTCAGAAACATAGTCTTGATTTGTTGGAAACTTGTGCTATGAATTGTGATAAAGTGTTTTCTGAAATTGCTTCTGAGAAGGTTCTTGATGATATGGTTAGGTTGATTGAGAATAATCAGGGTGATGGTGGGAATAGAAGAAGGGCTTTTCAGTTGATTAGGGCTTGGGGTGAGTCTCAGGATATTGCTTATCTTCCTGTTTTCAGTCAGACTTATATGAGTTTGAAAGGAAGGGGTGAATCACTTGACATGACGACAGGAAATTCTCCACCTATTCCGTATGCCTCAGAGTCAAGTGCTTATCAACATCCTTTGGATCCCCCTGAAAGATACCCAGTTCCAGAAGCAGGGCTACATGCTCTTGCTCTGGATGACTCAGCAGCTTTCTTTTCTGATCACCAACCAGCATCAGCTGAAGAGAAGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTAAAGGAAGATTTAACTTTGAGTCTGCTGGATAAGTGCAAGCAATCACTCTTTCTTATCAAGGAGATTGTGGAAAGCACCGCAAATGACGAAGAGACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAGCAGTTGGTTTCTAAGTATGAGGAGTTGGAAGCTTCTCAAAGTTCAGAGGCACAAAGTGTTGACACTGCAGGGCATGATGCGGAAGCTGTTCAAAACCCTTCCGAAAGGCGTGAAGTGGAAGCTGTTCAAAACCCCAGTGAAAGGCGTGAAGGTGATGAGTCCGAAGAGCTGTCAGAAGCTGCTCAGAGTCTTGATCGAAAGCTGCCTCAAAAGTCAAACACTCGTGAAGTCCCTGTTGATGCAACCGAGGGGGTTAGTCATGTTGAAACCAAAATAGTGGATAGCACGAAAGAGAAGAATGTTGAACCTAGCCTCAAGACTAATACCGAATGA

Protein sequence

>Msa1036800

MDKSKLAQFGERLKTSSANMSRIVSGKMKEILQTPTPESKMVDEATSETLSEPNWGMNLRICGLINAEEFNGSEIVKAIKRKINHKSPVVQKHSLDLLETCAMNCDKVFSEIASEKVLDDMVRLIENNQGDGGNRRRAFQLIRAWGESQDIAYLPVFSQTYMSLKGRGESLDMTTGNSPPIPYASESSAYQHPLDPPERYPVPEAGLHALALDDSAAFFSDHQPASAEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDLTLSLLDKCKQSLFLIKEIVESTANDEETLFEALYLNDELQQLVSKYEELEASQSSEAQSVDTAGHDAEAVQNPSERREVEAVQNPSERREGDESEELSEAAQSLDRKLPQKSNTREVPVDATEGVSHVETKIVDSTKEKNVEPSLKTNTE*