Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1036800 | XP_013449904.1 | 95.272 | 423 | 7 | 2 | 1 | 411 | 1 | 422 | 0.0 | 814 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1036800 | sp|Q9LNC6|TOL2_ARATH | 52.406 | 374 | 158 | 5 | 1 | 367 | 1 | 361 | 1.42e-121 | 360 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1036800 | A0A072U2J4 | 95.272 | 423 | 7 | 2 | 1 | 411 | 1 | 422 | 0.0 | 814 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004840 | Msa1036800 | 0.801652 | 8.137823e-49 | -8.615850e-47 |
Msa0020390 | Msa1036800 | 0.820758 | 5.790868e-53 | -8.615850e-47 |
Msa0038870 | Msa1036800 | 0.811719 | 6.083164e-51 | -8.615850e-47 |
Msa0071250 | Msa1036800 | 0.811660 | 6.266214e-51 | -8.615850e-47 |
Msa0086420 | Msa1036800 | 0.802891 | 4.523385e-49 | -8.615850e-47 |
Msa0090550 | Msa1036800 | 0.820998 | 5.098718e-53 | -8.615850e-47 |
Msa0116380 | Msa1036800 | 0.800987 | 1.113606e-48 | -8.615850e-47 |
Msa0118540 | Msa1036800 | 0.800382 | 1.479302e-48 | -8.615850e-47 |
Msa0604290 | Msa1036800 | 0.828667 | 7.913796e-55 | -8.615850e-47 |
Msa0610130 | Msa1036800 | 0.834812 | 2.413337e-56 | -8.615850e-47 |
Msa0610180 | Msa1036800 | 0.830849 | 2.329863e-55 | -8.615850e-47 |
Msa0643320 | Msa1036800 | 0.801263 | 9.779653e-49 | -8.615850e-47 |
Msa0645530 | Msa1036800 | 0.803390 | 3.566815e-49 | -8.615850e-47 |
Msa0672550 | Msa1036800 | 0.823146 | 1.620802e-53 | -8.615850e-47 |
Msa0685090 | Msa1036800 | 0.800342 | 1.507521e-48 | -8.615850e-47 |
Msa0703910 | Msa1036800 | 0.839604 | 1.435050e-57 | -8.615850e-47 |
Msa0724170 | Msa1036800 | 0.808359 | 3.220378e-50 | -8.615850e-47 |
Msa0746210 | Msa1036800 | 0.807482 | 4.947294e-50 | -8.615850e-47 |
Msa0750850 | Msa1036800 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
Msa0800370 | Msa1036800 | 0.811877 | 5.618098e-51 | -8.615850e-47 |
Msa0826150 | Msa1036800 | 0.814328 | 1.629062e-51 | -8.615850e-47 |
Msa0148080 | Msa1036800 | 0.816239 | 6.127121e-52 | -8.615850e-47 |
Msa0160960 | Msa1036800 | 0.804222 | 2.396369e-49 | -8.615850e-47 |
Msa0167980 | Msa1036800 | 0.815331 | 9.765928e-52 | -8.615850e-47 |
Msa0183870 | Msa1036800 | 0.805243 | 1.466836e-49 | -8.615850e-47 |
Msa0191070 | Msa1036800 | 0.800294 | 1.541722e-48 | -8.615850e-47 |
Msa0233370 | Msa1036800 | 0.829947 | 3.870532e-55 | -8.615850e-47 |
Msa0366210 | Msa1036800 | 0.800807 | 1.212006e-48 | -8.615850e-47 |
Msa0380100 | Msa1036800 | 0.822239 | 2.634715e-53 | -8.615850e-47 |
Msa0385490 | Msa1036800 | 0.848283 | 6.763647e-60 | -8.615850e-47 |
Msa0385500 | Msa1036800 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
Msa0414140 | Msa1036800 | 0.801793 | 7.612683e-49 | -8.615850e-47 |
Msa0427580 | Msa1036800 | 0.815745 | 7.897124e-52 | -8.615850e-47 |
Msa0457510 | Msa1036800 | 0.804840 | 1.781074e-49 | -8.615850e-47 |
Msa0481030 | Msa1036800 | 0.809194 | 2.134962e-50 | -8.615850e-47 |
Msa0481280 | Msa1036800 | 0.804993 | 1.654115e-49 | -8.615850e-47 |
Msa0980020 | Msa1036800 | 0.804185 | 2.439222e-49 | -8.615850e-47 |
Msa0985180 | Msa1036800 | 0.800224 | 1.593527e-48 | -8.615850e-47 |
Msa0992580 | Msa1036800 | 0.825815 | 3.816532e-54 | -8.615850e-47 |
Msa0994370 | Msa1036800 | 0.835802 | 1.357615e-56 | -8.615850e-47 |
Msa1036800 | Msa1071320 | 0.843205 | 1.616669e-58 | -8.615850e-47 |
Msa1036800 | Msa1072900 | 0.807658 | 4.538771e-50 | -8.615850e-47 |
Msa1036800 | Msa1081790 | -0.807644 | 4.569625e-50 | -8.615850e-47 |
Msa1036800 | Msa1089320 | 0.807721 | 4.401100e-50 | -8.615850e-47 |
Msa1036800 | Msa1107200 | 0.801421 | 9.074832e-49 | -8.615850e-47 |
Msa1036800 | Msa1133230 | 0.806165 | 9.392911e-50 | -8.615850e-47 |
Msa1036800 | Msa1133250 | 0.804032 | 2.623952e-49 | -8.615850e-47 |
Msa1036800 | Msa1149380 | 0.990979 | 2.821116e-185 | -8.615850e-47 |
Msa1036800 | Msa1166090 | -0.810311 | 1.227943e-50 | -8.615850e-47 |
Msa1036800 | Msa1175200 | 0.802731 | 4.880817e-49 | -8.615850e-47 |
Msa1036800 | Msa1176360 | 0.812747 | 3.627970e-51 | -8.615850e-47 |
Msa1036800 | Msa1196610 | -0.806755 | 7.050553e-50 | -8.615850e-47 |
Msa1036800 | Msa1231840 | 0.812012 | 5.250876e-51 | -8.615850e-47 |
Msa1036800 | Msa1242580 | -0.800589 | 1.342667e-48 | -8.615850e-47 |
Msa1036800 | Msa1250110 | 0.801120 | 1.046007e-48 | -8.615850e-47 |
Msa1036800 | Msa1270660 | 0.821853 | 3.237881e-53 | -8.615850e-47 |
Msa1036800 | Msa1305810 | 0.802452 | 5.573850e-49 | -8.615850e-47 |
Msa1036800 | Msa1307180 | 0.841200 | 5.488406e-58 | -8.615850e-47 |
Msa1036800 | Msa1316360 | 0.852636 | 4.053656e-61 | -8.615850e-47 |
Msa1036800 | Msa1336560 | 0.813187 | 2.905616e-51 | -8.615850e-47 |
Msa1036800 | Msa1346840 | 0.830694 | 2.542591e-55 | -8.615850e-47 |
Msa1036800 | Msa1351540 | 0.804666 | 1.936079e-49 | -8.615850e-47 |
Msa1036800 | Msa1364210 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
Msa1036800 | Msa1396400 | -0.808623 | 2.827861e-50 | -8.615850e-47 |
Msa1036800 | Msa1440790 | 0.820614 | 6.250643e-53 | -8.615850e-47 |
Msa0241140 | Msa1036800 | 0.803672 | 3.117332e-49 | -8.615850e-47 |
Msa0257500 | Msa1036800 | 0.830085 | 3.580846e-55 | -8.615850e-47 |
Msa0311720 | Msa1036800 | 0.811001 | 8.709132e-51 | -8.615850e-47 |
Msa0321690 | Msa1036800 | 0.832269 | 1.040736e-55 | -8.615850e-47 |
Msa0518170 | Msa1036800 | 0.825856 | 3.730811e-54 | -8.615850e-47 |
Msa0527540 | Msa1036800 | 0.807209 | 5.653364e-50 | -8.615850e-47 |
Msa0542290 | Msa1036800 | 0.806403 | 8.364859e-50 | -8.615850e-47 |
Msa0542560 | Msa1036800 | 0.823458 | 1.370160e-53 | -8.615850e-47 |
Msa0544840 | Msa1036800 | 0.815461 | 9.138176e-52 | -8.615850e-47 |
Msa0549780 | Msa1036800 | 0.802929 | 4.442698e-49 | -8.615850e-47 |
Msa0844110 | Msa1036800 | 0.805498 | 1.296585e-49 | -8.615850e-47 |
Msa0861470 | Msa1036800 | 0.824191 | 9.225455e-54 | -8.615850e-47 |
Msa0861570 | Msa1036800 | 0.839441 | 1.582027e-57 | -8.615850e-47 |
Msa0887250 | Msa1036800 | 0.803715 | 3.054368e-49 | -8.615850e-47 |
Msa0890550 | Msa1036800 | 0.801451 | 8.947075e-49 | -8.615850e-47 |
Msa0892640 | Msa1036800 | 0.808851 | 2.527750e-50 | -8.615850e-47 |
Msa0958030 | Msa1036800 | 0.802528 | 5.374279e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1036800 | MtrunA17_Chr7g0261361 | 95.272 | 423 | 7 | 2 | 1 | 411 | 1 | 422 | 0.0 | 814 |
Msa1036800 | MtrunA17_Chr5g0395341 | 37.637 | 364 | 195 | 7 | 5 | 352 | 8 | 355 | 1.09e-69 | 225 |
Msa1036800 | MtrunA17_Chr4g0039841 | 40.248 | 323 | 174 | 7 | 3 | 311 | 33 | 350 | 4.53e-55 | 188 |
Msa1036800 | MtrunA17_Chr8g0388361 | 95.385 | 65 | 3 | 0 | 57 | 121 | 1 | 65 | 5.45e-38 | 131 |
Msa1036800 | MtrunA17_Chr7g0244381 | 26.144 | 306 | 204 | 8 | 43 | 342 | 15 | 304 | 1.70e-23 | 103 |
Msa1036800 | MtrunA17_Chr3g0139891 | 28.750 | 320 | 182 | 13 | 41 | 341 | 5 | 297 | 2.02e-22 | 99.8 |
Msa1036800 | MtrunA17_Chr1g0157701 | 26.230 | 366 | 217 | 14 | 41 | 382 | 5 | 341 | 7.07e-22 | 98.2 |
Msa1036800 | MtrunA17_Chr3g0125541 | 29.167 | 288 | 178 | 10 | 43 | 323 | 10 | 278 | 3.48e-21 | 95.5 |
Msa1036800 | MtrunA17_Chr3g0131021 | 23.427 | 286 | 193 | 9 | 39 | 317 | 3 | 269 | 2.06e-14 | 74.7 |
Msa1036800 | MtrunA17_Chr8g0385261 | 23.793 | 290 | 187 | 10 | 39 | 316 | 3 | 270 | 3.86e-13 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1036800 | AT1G06210.1 | 52.406 | 374 | 158 | 5 | 1 | 367 | 1 | 361 | 1.45e-122 | 360 |
Msa1036800 | AT1G06210.2 | 56.537 | 283 | 100 | 5 | 1 | 269 | 1 | 274 | 3.69e-98 | 294 |
Msa1036800 | AT5G16880.4 | 41.509 | 318 | 162 | 5 | 5 | 310 | 8 | 313 | 2.28e-74 | 238 |
Msa1036800 | AT5G16880.1 | 41.509 | 318 | 162 | 5 | 5 | 310 | 8 | 313 | 2.28e-74 | 238 |
Msa1036800 | AT5G16880.2 | 41.509 | 318 | 162 | 5 | 5 | 310 | 8 | 313 | 2.28e-74 | 238 |
Msa1036800 | AT5G16880.3 | 40.909 | 308 | 142 | 8 | 5 | 293 | 8 | 294 | 3.09e-66 | 213 |
Msa1036800 | AT4G32760.3 | 28.826 | 281 | 170 | 10 | 41 | 310 | 5 | 266 | 6.77e-23 | 100 |
Msa1036800 | AT4G32760.2 | 28.826 | 281 | 170 | 10 | 41 | 310 | 5 | 266 | 1.32e-22 | 100 |
Msa1036800 | AT4G32760.1 | 28.826 | 281 | 170 | 10 | 41 | 310 | 5 | 266 | 1.42e-22 | 100 |
Msa1036800 | AT1G21380.1 | 27.106 | 273 | 176 | 8 | 43 | 309 | 10 | 265 | 8.78e-22 | 97.8 |
Msa1036800 | AT5G01760.1 | 26.855 | 283 | 182 | 8 | 42 | 315 | 26 | 292 | 3.48e-21 | 96.3 |
Msa1036800 | AT1G76970.2 | 26.740 | 273 | 171 | 8 | 43 | 310 | 10 | 258 | 1.20e-20 | 94.0 |
Msa1036800 | AT1G76970.3 | 26.740 | 273 | 171 | 8 | 43 | 310 | 10 | 258 | 1.20e-20 | 94.0 |
Msa1036800 | AT1G76970.6 | 26.740 | 273 | 171 | 8 | 43 | 310 | 10 | 258 | 1.20e-20 | 94.0 |
Msa1036800 | AT1G76970.1 | 26.740 | 273 | 171 | 8 | 43 | 310 | 10 | 258 | 1.20e-20 | 94.0 |
Msa1036800 | AT3G08790.1 | 28.214 | 280 | 178 | 9 | 41 | 315 | 5 | 266 | 1.47e-19 | 91.3 |
Msa1036800 | AT5G63640.1 | 23.292 | 322 | 207 | 10 | 39 | 342 | 3 | 302 | 1.69e-16 | 81.6 |
Msa1036800 | AT5G63640.2 | 23.292 | 322 | 207 | 10 | 39 | 342 | 3 | 302 | 1.69e-16 | 81.6 |
Msa1036800 | AT2G38410.1 | 23.607 | 305 | 194 | 9 | 43 | 310 | 13 | 315 | 6.13e-16 | 80.5 |
Msa1036800 | AT1G76970.7 | 25.573 | 262 | 161 | 9 | 74 | 330 | 15 | 247 | 8.69e-13 | 70.1 |
Msa1036800 | AT1G76970.4 | 25.573 | 262 | 161 | 9 | 74 | 330 | 15 | 247 | 8.69e-13 | 70.1 |
Find 116 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGGAACTGGGTATCTTTC+AGG | 0.073874 | 7_1:+73239759 | None:intergenic |
AAACATTATCTGAACCAAAT+TGG | 0.209591 | 7_1:-73242341 | Msa1036800:CDS |
TTTCGTGCTATCCACTATTT+TGG | 0.212900 | 7_1:+73238713 | None:intergenic |
AACCTATAGTTCCTTCTATA+AGG | 0.217376 | 7_1:-73238564 | Msa1036800:three_prime_UTR |
TGTTGCTTCGTCGACCATTT+TGG | 0.217475 | 7_1:+73242368 | None:intergenic |
TAAACTCTTCGGCGTTAATA+AGG | 0.243065 | 7_1:+73242295 | None:intergenic |
CTGAGATTCATGCCCCAATT+TGG | 0.268510 | 7_1:+73242327 | None:intergenic |
AAGTTTACCTTTAAAGGTTT+TGG | 0.279646 | 7_1:+73239588 | None:intergenic |
GGCAGAGCCAAAACCTTTAA+AGG | 0.284783 | 7_1:-73239595 | Msa1036800:intron |
AACATTATCTGAACCAAATT+GGG | 0.287314 | 7_1:-73242340 | Msa1036800:CDS |
TGAGAAGGTTCTTGATGATA+TGG | 0.294087 | 7_1:-73242142 | Msa1036800:CDS |
TCGGCTCATGTTGGCGCTGC+TGG | 0.319679 | 7_1:+73242440 | None:intergenic |
GTTAGTGAAGGTTATGTTAT+GGG | 0.320735 | 7_1:+73242547 | None:intergenic |
TATTACACGCCTACACAATA+TGG | 0.323040 | 7_1:+73238592 | None:intergenic |
TGTAGCCCTGCTTCTGGAAC+TGG | 0.326880 | 7_1:+73239747 | None:intergenic |
ATCACCTTCACGCCTTTCAC+TGG | 0.326939 | 7_1:+73238848 | None:intergenic |
AGCTTCCACTTCACGCCTTT+CGG | 0.333758 | 7_1:+73238881 | None:intergenic |
TAGGTTGATTGAGAATAATC+AGG | 0.339682 | 7_1:-73242118 | Msa1036800:CDS |
AGAGCATGTAGCCCTGCTTC+TGG | 0.342170 | 7_1:+73239741 | None:intergenic |
TGGATTCAGGTGTTGGTGTT+TGG | 0.344888 | 7_1:+73242388 | None:intergenic |
GAAACATAGTCTTGATTTGT+TGG | 0.357292 | 7_1:-73242211 | Msa1036800:CDS |
ACACCATTCGAATCCGATCT+AGG | 0.360563 | 7_1:-73242522 | Msa1036800:five_prime_UTR |
TTCTTCTCTTCAGCTGATGC+TGG | 0.370248 | 7_1:+73239678 | None:intergenic |
TAGGGCTTGGGGTGAGTCTC+AGG | 0.372522 | 7_1:-73242058 | Msa1036800:CDS |
AGATTTAACTTTGAGTCTGC+TGG | 0.388877 | 7_1:-73239108 | Msa1036800:CDS |
CTGGAACTGGGTATCTTTCA+GGG | 0.403076 | 7_1:+73239760 | None:intergenic |
AAGTGTCTCTTCGTCATTTG+CGG | 0.424585 | 7_1:+73239037 | None:intergenic |
ACCTATAGTTCCTTCTATAA+GGG | 0.426947 | 7_1:-73238563 | Msa1036800:three_prime_UTR |
AAGTGCTTATCAACATCCTT+TGG | 0.427379 | 7_1:-73239787 | Msa1036800:CDS |
GATATAATCACCCTTATAGA+AGG | 0.427823 | 7_1:+73238553 | None:intergenic |
GCAATCACTCTTTCTTATCA+AGG | 0.428442 | 7_1:-73239075 | Msa1036800:CDS |
TTCAGAACCGTTAAACTCTT+CGG | 0.431789 | 7_1:+73242284 | None:intergenic |
TCACCTTCACGCCTTTCACT+GGG | 0.442488 | 7_1:+73238849 | None:intergenic |
AGACTATGTTTCTGAACAAC+AGG | 0.445577 | 7_1:+73242222 | None:intergenic |
ACCAACACCTGAATCCAAAA+TGG | 0.446625 | 7_1:-73242382 | Msa1036800:CDS |
CCTGTGGTCGTCGTCGAGAT+AGG | 0.448202 | 7_1:+73242670 | None:intergenic |
GAGAATAATCAGGGTGATGG+TGG | 0.448384 | 7_1:-73242108 | Msa1036800:CDS |
AGGTTCTTGATGATATGGTT+AGG | 0.452679 | 7_1:-73242137 | Msa1036800:CDS |
AGCAGCTTCTGACAGCTCTT+CGG | 0.454162 | 7_1:+73238821 | None:intergenic |
GCAGTTGGTTTCTAAGTATG+AGG | 0.459831 | 7_1:-73238982 | Msa1036800:CDS |
GACTCTGAGGCATACGGAAT+AGG | 0.460079 | 7_1:+73239810 | None:intergenic |
ATTAACGCCGAAGAGTTTAA+CGG | 0.462205 | 7_1:-73242291 | Msa1036800:CDS |
TCCACTTCACGCCTTTCGGA+AGG | 0.464569 | 7_1:+73238885 | None:intergenic |
TCATGTTGAAACCAAAATAG+TGG | 0.465440 | 7_1:-73238724 | Msa1036800:CDS |
TGTTAGTGAAGGTTATGTTA+TGG | 0.469604 | 7_1:+73242546 | None:intergenic |
CTTTCTTATCAAGGAGATTG+TGG | 0.471308 | 7_1:-73239066 | Msa1036800:CDS |
ATATAAGTCTGACTGAAAAC+AGG | 0.472919 | 7_1:+73242021 | None:intergenic |
AGGGTTTCTGTCTGACTCCA+TGG | 0.475349 | 7_1:-73242502 | Msa1036800:exon |
TGGAACTGGGTATCTTTCAG+GGG | 0.477292 | 7_1:+73239761 | None:intergenic |
GGTTTCTAAGTATGAGGAGT+TGG | 0.477710 | 7_1:-73238976 | Msa1036800:CDS |
CTCATTCGGTATTAGTCTTG+AGG | 0.480612 | 7_1:+73238670 | None:intergenic |
GGATTAAATATCACAATCCT+CGG | 0.483495 | 7_1:+73238530 | None:intergenic |
AGATACCCAGTTCCAGAAGC+AGG | 0.487684 | 7_1:-73239753 | Msa1036800:CDS |
AAATCAAAGCTAGCTCAATT+CGG | 0.491882 | 7_1:-73242477 | Msa1036800:CDS |
TCTCTTCAGCTGATGCTGGT+TGG | 0.495094 | 7_1:+73239682 | None:intergenic |
TTCTGAAATTGCTTCTGAGA+AGG | 0.500375 | 7_1:-73242157 | Msa1036800:CDS |
GACTCGTTTATCTGAGGAAG+AGG | 0.501929 | 7_1:+73238439 | None:intergenic |
CGAATGGTGTTTGTTAGTGA+AGG | 0.501952 | 7_1:+73242535 | None:intergenic |
ACCCTTATAGAAGGAACTAT+AGG | 0.503546 | 7_1:+73238562 | None:intergenic |
CCACTTCACGCCTTTCGGAA+GGG | 0.507110 | 7_1:+73238886 | None:intergenic |
TTTCAGTTGATTAGGGCTTG+GGG | 0.512504 | 7_1:-73242069 | Msa1036800:CDS |
CACCATTCGAATCCGATCTA+GGG | 0.514973 | 7_1:-73242521 | Msa1036800:five_prime_UTR |
AGCTAGCTTTGATTTGTCCA+TGG | 0.517070 | 7_1:+73242485 | None:intergenic |
ATTACAGAGTTTGAAAGGAA+GGG | 0.518353 | 7_1:-73239868 | Msa1036800:intron |
CATTGATTACAGAGTTTGAA+AGG | 0.519722 | 7_1:-73239873 | Msa1036800:intron |
AGGGCTACATGCTCTTGCTC+TGG | 0.521165 | 7_1:-73239733 | Msa1036800:CDS |
GATTACAGAGTTTGAAAGGA+AGG | 0.525440 | 7_1:-73239869 | Msa1036800:intron |
CAATGATGAGCTGCAGCAGT+TGG | 0.526001 | 7_1:-73238997 | Msa1036800:CDS |
TTACAGAGTTTGAAAGGAAG+GGG | 0.533707 | 7_1:-73239867 | Msa1036800:intron |
GTCGTCGTCGAGATAGGAAT+GGG | 0.535016 | 7_1:+73242676 | None:intergenic |
TCGGTATTAGTCTTGAGGCT+AGG | 0.535376 | 7_1:+73238675 | None:intergenic |
GTAGCCCTGCTTCTGGAACT+GGG | 0.539444 | 7_1:+73239748 | None:intergenic |
CCCTTCCGAAAGGCGTGAAG+TGG | 0.547349 | 7_1:-73238886 | Msa1036800:CDS |
AATGGTCGACGAAGCAACAT+CGG | 0.555458 | 7_1:-73242364 | Msa1036800:CDS |
GTGATGGTGGGAATAGAAGA+AGG | 0.556106 | 7_1:-73242095 | Msa1036800:CDS |
AGGTTGATTGAGAATAATCA+GGG | 0.556748 | 7_1:-73242117 | Msa1036800:CDS |
AGAATAATCAGGGTGATGGT+GGG | 0.559331 | 7_1:-73242107 | Msa1036800:CDS |
GCACAAAGTGTTGACACTGC+AGG | 0.562346 | 7_1:-73238933 | Msa1036800:CDS |
GATTAAATATCACAATCCTC+GGG | 0.564206 | 7_1:+73238531 | None:intergenic |
CACAAAGTGTTGACACTGCA+GGG | 0.565100 | 7_1:-73238932 | Msa1036800:CDS |
GCACTTGACTCTGAGGCATA+CGG | 0.567301 | 7_1:+73239804 | None:intergenic |
CCTATCTCGACGACGACCAC+AGG | 0.569860 | 7_1:-73242670 | Msa1036800:five_prime_UTR |
CTGTTCAAAACCCCAGTGAA+AGG | 0.574003 | 7_1:-73238860 | Msa1036800:CDS |
GTCCCTGTTGATGCAACCGA+GGG | 0.574251 | 7_1:-73238753 | Msa1036800:CDS |
AGCTAGCTCAATTCGGTGAG+AGG | 0.574332 | 7_1:-73242470 | Msa1036800:CDS |
TGTTGCTGTCCATATTGTGT+AGG | 0.576162 | 7_1:-73238601 | Msa1036800:three_prime_UTR |
GGTCGTCGTCGAGATAGGAA+TGG | 0.576918 | 7_1:+73242675 | None:intergenic |
GAATCACTTGACATGACGAC+AGG | 0.581911 | 7_1:-73239843 | Msa1036800:CDS |
ATTGAGAATAATCAGGGTGA+TGG | 0.587995 | 7_1:-73242111 | Msa1036800:CDS |
TCTGAGGCATACGGAATAGG+TGG | 0.600817 | 7_1:+73239813 | None:intergenic |
GGAACTGGGTATCTTTCAGG+GGG | 0.603356 | 7_1:+73239762 | None:intergenic |
AGTTCATCATAATGTTAATG+TGG | 0.605472 | 7_1:-73238492 | Msa1036800:three_prime_UTR |
GTCAGACAGAAACCCTAGAT+CGG | 0.608500 | 7_1:+73242509 | None:intergenic |
CTCTAGCATATTAAATTCTG+AGG | 0.609799 | 7_1:-73239616 | Msa1036800:CDS |
TTGATAAGCACTTGACTCTG+AGG | 0.611483 | 7_1:+73239797 | None:intergenic |
AACCCCAGTGAAAGGCGTGA+AGG | 0.616642 | 7_1:-73238852 | Msa1036800:CDS |
GCTTACGATTCGGCTCATGT+TGG | 0.617537 | 7_1:+73242431 | None:intergenic |
CACCTTCACGCCTTTCACTG+GGG | 0.622736 | 7_1:+73238850 | None:intergenic |
GGAAGCTTCTCAAAGTTCAG+AGG | 0.623281 | 7_1:-73238955 | Msa1036800:CDS |
TGATGGTGGGAATAGAAGAA+GGG | 0.626796 | 7_1:-73242094 | Msa1036800:CDS |
TGCCATGACTCGTTTATCTG+AGG | 0.627116 | 7_1:+73238433 | None:intergenic |
AACATGAGCCGAATCGTAAG+CGG | 0.628012 | 7_1:-73242429 | Msa1036800:CDS |
GTGGCTTTGTTGGAGGCCTG+TGG | 0.628445 | 7_1:+73242654 | None:intergenic |
GATACCCAGTTCCAGAAGCA+GGG | 0.631013 | 7_1:-73239752 | Msa1036800:CDS |
ATACCGAATGAGAAAAGCGA+AGG | 0.631923 | 7_1:-73238659 | Msa1036800:exon |
AACCCTAGATCGGATTCGAA+TGG | 0.634318 | 7_1:+73242519 | None:intergenic |
CTGTTCAAAACCCTTCCGAA+AGG | 0.645153 | 7_1:-73238896 | Msa1036800:CDS |
CCCTGTTGATGCAACCGAGG+GGG | 0.645872 | 7_1:-73238751 | Msa1036800:CDS |
ACATTATCTGAACCAAATTG+GGG | 0.646003 | 7_1:-73242339 | Msa1036800:CDS |
AGTCCCTGTTGATGCAACCG+AGG | 0.662599 | 7_1:-73238754 | Msa1036800:CDS |
ATAAGGGTGATTATATCCCG+AGG | 0.666087 | 7_1:-73238547 | Msa1036800:three_prime_UTR |
GGCATGAATCTCAGAATCTG+CGG | 0.695779 | 7_1:-73242318 | Msa1036800:CDS |
TGAACTACAATAATCTCACA+AGG | 0.707193 | 7_1:+73238509 | None:intergenic |
TCCCTGTTGATGCAACCGAG+GGG | 0.709087 | 7_1:-73238752 | Msa1036800:CDS |
TGACACTGCAGGGCATGATG+CGG | 0.709885 | 7_1:-73238922 | Msa1036800:CDS |
AGAGAAGAAAGAGCATCTTG+TGG | 0.719443 | 7_1:-73239664 | Msa1036800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTACTTTTAATCTTAAA+AGG | - | chr7_1:73240491-73240510 | Msa1036800:intron | 10.0% |
!!! | AATTTTTTTTTTTTTTGTAG+TGG | - | chr7_1:73241787-73241806 | Msa1036800:intron | 10.0% |
!!! | TTTATTGGTTAAAATTCAAA+TGG | - | chr7_1:73239384-73239403 | Msa1036800:intron | 15.0% |
!!! | TTATTGGTTAAAATTCAAAT+GGG | - | chr7_1:73239385-73239404 | Msa1036800:intron | 15.0% |
!!! | TTGAAAGTTGAAATTTTTAT+AGG | + | chr7_1:73239432-73239451 | None:intergenic | 15.0% |
!!! | AATTTTAACATCCTTAATAA+GGG | + | chr7_1:73239720-73239739 | None:intergenic | 15.0% |
!!! | TAATTTTAACATCCTTAATA+AGG | + | chr7_1:73239721-73239740 | None:intergenic | 15.0% |
!! | TAAGGATGTTAAAATTAATT+TGG | - | chr7_1:73239724-73239743 | Msa1036800:CDS | 15.0% |
!! | TTTATATCTATCTACTTATT+AGG | - | chr7_1:73239906-73239925 | Msa1036800:intron | 15.0% |
!! | ATGGTAAAATAAAAAATAGA+AGG | + | chr7_1:73241183-73241202 | None:intergenic | 15.0% |
!! | TAGGAAAAAATATATTATTG+TGG | + | chr7_1:73241975-73241994 | None:intergenic | 15.0% |
!! | AAATTATTGTACTTTCTATT+AGG | + | chr7_1:73241994-73242013 | None:intergenic | 15.0% |
!!! | TTTGACTTTTTTATTTTACG+TGG | + | chr7_1:73238503-73238522 | None:intergenic | 20.0% |
!!! | AATTTCAACTTTCAAGTAAT+AGG | - | chr7_1:73239437-73239456 | Msa1036800:intron | 20.0% |
!! | TATATAGAATTCATCTTAGT+AGG | - | chr7_1:73239585-73239604 | Msa1036800:intron | 20.0% |
!! | AAAACCATTGAAAATTGAAA+TGG | + | chr7_1:73239858-73239877 | None:intergenic | 20.0% |
!!! | TGTTTAGACATTTTTGTTTT+TGG | - | chr7_1:73239877-73239896 | Msa1036800:intron | 20.0% |
!! | ATTAGGAATAAAAGATAGTT+GGG | + | chr7_1:73240341-73240360 | None:intergenic | 20.0% |
!! | AATTAGGAATAAAAGATAGT+TGG | + | chr7_1:73240342-73240361 | None:intergenic | 20.0% |
!!! | TTTCTTCATTACTTTTATGA+TGG | - | chr7_1:73240590-73240609 | Msa1036800:intron | 20.0% |
!!! | TTCTTCATTACTTTTATGAT+GGG | - | chr7_1:73240591-73240610 | Msa1036800:intron | 20.0% |
!!! | TTTCTTCATTACTTTTATGA+TGG | - | chr7_1:73240590-73240609 | Msa1036800:intron | 20.0% |
!!! | ACCTATGTTATTTGAATTAT+GGG | + | chr7_1:73240937-73240956 | None:intergenic | 20.0% |
!! | ATGTAAAAATATCATTTACC+AGG | - | chr7_1:73241072-73241091 | Msa1036800:intron | 20.0% |
!! | TGTATGATTCAAATTAATAG+CGG | + | chr7_1:73241232-73241251 | None:intergenic | 20.0% |
!! | TCAAAAAAGTTTACCTTTAA+AGG | + | chr7_1:73241556-73241575 | None:intergenic | 20.0% |
!! | AAAAATATTCAGCATAAGAA+TGG | + | chr7_1:73241694-73241713 | None:intergenic | 20.0% |
!!! | TTTTTTTTATCTCTTATCCA+AGG | - | chr7_1:73241716-73241735 | Msa1036800:intron | 20.0% |
!!! | TTTTTTTTTTTTGTAGTGGT+CGG | - | chr7_1:73241791-73241810 | Msa1036800:intron | 20.0% |
!!! | ACCTTGCATATATATATTTT+TGG | - | chr7_1:73241828-73241847 | Msa1036800:intron | 20.0% |
!!! | CCTTGCATATATATATTTTT+GGG | - | chr7_1:73241829-73241848 | Msa1036800:intron | 20.0% |
!! | TAAATAGATCTCAATTATCT+CGG | + | chr7_1:73241896-73241915 | None:intergenic | 20.0% |
!! | GATCATTAATTATTTGATCA+GGG | + | chr7_1:73241933-73241952 | None:intergenic | 20.0% |
!! | TGATCATTAATTATTTGATC+AGG | + | chr7_1:73241934-73241953 | None:intergenic | 20.0% |
!!! | TAGAAAGTACAATAATTTTG+TGG | - | chr7_1:73241996-73242015 | Msa1036800:intron | 20.0% |
! | AAACATTATCTGAACCAAAT+TGG | - | chr7_1:73238794-73238813 | Msa1036800:CDS | 25.0% |
! | AACATTATCTGAACCAAATT+GGG | - | chr7_1:73238795-73238814 | Msa1036800:CDS | 25.0% |
! | TTGTTGTAACATACATTACA+TGG | - | chr7_1:73239294-73239313 | Msa1036800:intron | 25.0% |
! | TTTGAGTGTTACAATATGTT+AGG | - | chr7_1:73239320-73239339 | Msa1036800:intron | 25.0% |
! | TTAGGTTTATGAGTATGTAA+AGG | - | chr7_1:73239338-73239357 | Msa1036800:intron | 25.0% |
!! | ACCAACATAGTTTCTTTTAT+TGG | - | chr7_1:73239369-73239388 | Msa1036800:intron | 25.0% |
! | ACCAATAAAAGAAACTATGT+TGG | + | chr7_1:73239373-73239392 | None:intergenic | 25.0% |
! | GTAATAGGATAGAATATGAT+AGG | - | chr7_1:73239452-73239471 | Msa1036800:intron | 25.0% |
!! | CAATCATATTTTGCATCTTT+AGG | - | chr7_1:73239685-73239704 | Msa1036800:CDS | 25.0% |
! | ATCTACAAGACAAATCATAA+TGG | + | chr7_1:73239794-73239813 | None:intergenic | 25.0% |
! | ATTGAAAATTGAAATGGACA+TGG | + | chr7_1:73239852-73239871 | None:intergenic | 25.0% |
!! | ATGTCCATTTCAATTTTCAA+TGG | - | chr7_1:73239851-73239870 | Msa1036800:CDS | 25.0% |
!!! | TATGAAGTTTTATTGGATGA+AGG | + | chr7_1:73239936-73239955 | None:intergenic | 25.0% |
! | TAAAACGAAAAAATGCCATA+TGG | + | chr7_1:73240061-73240080 | None:intergenic | 25.0% |
! | TTAAAAGAAAATTGACTGCA+TGG | + | chr7_1:73240449-73240468 | None:intergenic | 25.0% |
! | TTAATCTTAAAAGGCAATGT+TGG | - | chr7_1:73240500-73240519 | Msa1036800:intron | 25.0% |
! | TAAATCATAGTATTCGATCT+AGG | + | chr7_1:73240561-73240580 | None:intergenic | 25.0% |
!! | TATTTTCATTTAGTCTACCT+AGG | - | chr7_1:73240541-73240560 | Msa1036800:intron | 25.0% |
!!! | TTACTTTTATGATGGATTCA+AGG | - | chr7_1:73240753-73240772 | Msa1036800:intron | 25.0% |
! | ATATACCATTTCACTTTATC+TGG | - | chr7_1:73240862-73240881 | Msa1036800:intron | 25.0% |
! | ATTATGGGAGAGAAAATAAA+TGG | + | chr7_1:73240922-73240941 | None:intergenic | 25.0% |
! | TCCCATAATTCAAATAACAT+AGG | - | chr7_1:73240933-73240952 | Msa1036800:intron | 25.0% |
!! | GACCTATGTTATTTGAATTA+TGG | + | chr7_1:73240938-73240957 | None:intergenic | 25.0% |
!! | ATTTCAATCGAGTTTTTCTT+GGG | + | chr7_1:73240960-73240979 | None:intergenic | 25.0% |
!! | AATTTCAATCGAGTTTTTCT+TGG | + | chr7_1:73240961-73240980 | None:intergenic | 25.0% |
! | AGAAAAACTCGATTGAAATT+TGG | - | chr7_1:73240961-73240980 | Msa1036800:intron | 25.0% |
!!! | AAGTTTACCTTTAAAGGTTT+TGG | + | chr7_1:73241550-73241569 | None:intergenic | 25.0% |
!!! | TTTTGAAATTAAAGAAGTGC+TGG | - | chr7_1:73241570-73241589 | Msa1036800:intron | 25.0% |
! | AAAACAACAATTTATTGCTC+AGG | + | chr7_1:73241610-73241629 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTTGTAGTGGTC+GGG | - | chr7_1:73241792-73241811 | Msa1036800:intron | 25.0% |
! | AAATATATATATGCAAGGTC+CGG | + | chr7_1:73241827-73241846 | None:intergenic | 25.0% |
! | CCCAAAAATATATATATGCA+AGG | + | chr7_1:73241832-73241851 | None:intergenic | 25.0% |
!! | TACAATAATTTTGTGGTTGT+AGG | - | chr7_1:73242003-73242022 | Msa1036800:intron | 25.0% |
! | AGTTCATCATAATGTTAATG+TGG | - | chr7_1:73242643-73242662 | Msa1036800:five_prime_UTR | 25.0% |
!!! | TCAAAATGAGAGCATTTTTA+AGG | + | chr7_1:73242675-73242694 | None:intergenic | 25.0% |
!!! | TTTATTTTACGTGGCTTTGT+TGG | + | chr7_1:73238494-73238513 | None:intergenic | 30.0% |
AAAAATGGGAAAGTGATAAC+TGG | + | chr7_1:73238562-73238581 | None:intergenic | 30.0% | |
GTTATGGGAATGTGAAAAAT+GGG | + | chr7_1:73238576-73238595 | None:intergenic | 30.0% | |
TGTTATGGGAATGTGAAAAA+TGG | + | chr7_1:73238577-73238596 | None:intergenic | 30.0% | |
GTTAGTGAAGGTTATGTTAT+GGG | + | chr7_1:73238591-73238610 | None:intergenic | 30.0% | |
TGTTAGTGAAGGTTATGTTA+TGG | + | chr7_1:73238592-73238611 | None:intergenic | 30.0% | |
AAATCAAAGCTAGCTCAATT+CGG | - | chr7_1:73238658-73238677 | Msa1036800:exon | 30.0% | |
ACATTATCTGAACCAAATTG+GGG | - | chr7_1:73238796-73238815 | Msa1036800:CDS | 30.0% | |
!! | GAAACATAGTCTTGATTTGT+TGG | - | chr7_1:73238924-73238943 | Msa1036800:CDS | 30.0% |
!! | TAGGTTGATTGAGAATAATC+AGG | - | chr7_1:73239017-73239036 | Msa1036800:CDS | 30.0% |
! | AGGTTGATTGAGAATAATCA+GGG | - | chr7_1:73239018-73239037 | Msa1036800:CDS | 30.0% |
ATATAAGTCTGACTGAAAAC+AGG | + | chr7_1:73239117-73239136 | None:intergenic | 30.0% | |
! | TGTTTTCAGTCAGACTTATA+TGG | - | chr7_1:73239116-73239135 | Msa1036800:intron | 30.0% |
GGGTCTCATAAAATTATAGT+TGG | - | chr7_1:73239405-73239424 | Msa1036800:intron | 30.0% | |
TTAGTTAGAACTATGATGAG+AGG | - | chr7_1:73239611-73239630 | Msa1036800:CDS | 30.0% | |
TAGTTAGAACTATGATGAGA+GGG | - | chr7_1:73239612-73239631 | Msa1036800:CDS | 30.0% | |
! | TATTTTGCATCTTTAGGCTT+AGG | - | chr7_1:73239691-73239710 | Msa1036800:CDS | 30.0% |
TGGATCTATATAGCTACTAT+CGG | + | chr7_1:73239832-73239851 | None:intergenic | 30.0% | |
CATCCAATAAAACTTCATAC+CGG | - | chr7_1:73239937-73239956 | Msa1036800:intron | 30.0% | |
ATCCAATAAAACTTCATACC+GGG | - | chr7_1:73239938-73239957 | Msa1036800:intron | 30.0% | |
TTCAAGACAAATAGAAATCC+CGG | + | chr7_1:73239959-73239978 | None:intergenic | 30.0% | |
TATAACCAATCCCACTTAAT+GGG | + | chr7_1:73240122-73240141 | None:intergenic | 30.0% | |
!! | ATTAAGTGGGATTGGTTATA+CGG | - | chr7_1:73240122-73240141 | Msa1036800:intron | 30.0% |
AAAACTCAGTTCTTTCTTGT+TGG | - | chr7_1:73240205-73240224 | Msa1036800:intron | 30.0% | |
AAACTCAGTTCTTTCTTGTT+GGG | - | chr7_1:73240206-73240225 | Msa1036800:intron | 30.0% | |
GAAGATAGCTCAATAATTAG+AGG | + | chr7_1:73240259-73240278 | None:intergenic | 30.0% | |
GTAAATATGACAGATCAAGA+TGG | + | chr7_1:73240281-73240300 | None:intergenic | 30.0% | |
TTGATCTGTCATATTTACCA+AGG | - | chr7_1:73240283-73240302 | Msa1036800:intron | 30.0% | |
ATACAAGACATGACAGAATT+AGG | + | chr7_1:73240358-73240377 | None:intergenic | 30.0% | |
!!! | TTACTTTTATGATGGGTTCA+AGG | - | chr7_1:73240598-73240617 | Msa1036800:intron | 30.0% |
CATAGTAAGATTTCCAACTT+TGG | - | chr7_1:73240641-73240660 | Msa1036800:intron | 30.0% | |
TAAATCATAGTATTCGACCT+AGG | + | chr7_1:73240716-73240735 | None:intergenic | 30.0% | |
CATAGTAAGATTTCCAACTT+TGG | - | chr7_1:73240641-73240660 | Msa1036800:intron | 30.0% | |
ATCTATACATATCCTAAGAC+GGG | + | chr7_1:73240829-73240848 | None:intergenic | 30.0% | |
CATCTATACATATCCTAAGA+CGG | + | chr7_1:73240830-73240849 | None:intergenic | 30.0% | |
TTAGACCAGATAAAGTGAAA+TGG | + | chr7_1:73240870-73240889 | None:intergenic | 30.0% | |
TGGATAAGAAAATTTCATCG+AGG | - | chr7_1:73240981-73241000 | Msa1036800:intron | 30.0% | |
ATAAGAAAATTTCATCGAGG+AGG | - | chr7_1:73240984-73241003 | Msa1036800:intron | 30.0% | |
GATATCTTTCTACAGAATGT+TGG | - | chr7_1:73241104-73241123 | Msa1036800:intron | 30.0% | |
!! | AAAATAGAAGGCGTCATATT+TGG | + | chr7_1:73241171-73241190 | None:intergenic | 30.0% |
! | AAATTAATAGCGGAGAGAAA+AGG | + | chr7_1:73241222-73241241 | None:intergenic | 30.0% |
! | CATTGATTACAGAGTTTGAA+AGG | - | chr7_1:73241262-73241281 | Msa1036800:intron | 30.0% |
ATTACAGAGTTTGAAAGGAA+GGG | - | chr7_1:73241267-73241286 | Msa1036800:intron | 30.0% | |
CTCTAGCATATTAAATTCTG+AGG | - | chr7_1:73241519-73241538 | Msa1036800:intron | 30.0% | |
AACTACTTCATGATGTTTCT+TGG | - | chr7_1:73241633-73241652 | Msa1036800:intron | 30.0% | |
GATCCTGAAATCTATTAAAC+CGG | - | chr7_1:73241742-73241761 | Msa1036800:intron | 30.0% | |
! | ATCAAATTTGTTTCATCCTC+CGG | + | chr7_1:73241764-73241783 | None:intergenic | 30.0% |
!!! | TTTTTTTTTTGTAGTGGTCG+GGG | - | chr7_1:73241793-73241812 | Msa1036800:intron | 30.0% |
AATATATATATGCAAGGTCC+GGG | + | chr7_1:73241826-73241845 | None:intergenic | 30.0% | |
TCATGTTGAAACCAAAATAG+TGG | - | chr7_1:73242411-73242430 | Msa1036800:CDS | 30.0% | |
AACCTATAGTTCCTTCTATA+AGG | - | chr7_1:73242571-73242590 | Msa1036800:five_prime_UTR | 30.0% | |
ACCTATAGTTCCTTCTATAA+GGG | - | chr7_1:73242572-73242591 | Msa1036800:five_prime_UTR | 30.0% | |
GATATAATCACCCTTATAGA+AGG | + | chr7_1:73242585-73242604 | None:intergenic | 30.0% | |
GATTAAATATCACAATCCTC+GGG | + | chr7_1:73242607-73242626 | None:intergenic | 30.0% | |
GGATTAAATATCACAATCCT+CGG | + | chr7_1:73242608-73242627 | None:intergenic | 30.0% | |
TGAACTACAATAATCTCACA+AGG | + | chr7_1:73242629-73242648 | None:intergenic | 30.0% | |
TAAACTCTTCGGCGTTAATA+AGG | + | chr7_1:73238843-73238862 | None:intergenic | 35.0% | |
ATTAACGCCGAAGAGTTTAA+CGG | - | chr7_1:73238844-73238863 | Msa1036800:CDS | 35.0% | |
TTCAGAACCGTTAAACTCTT+CGG | + | chr7_1:73238854-73238873 | None:intergenic | 35.0% | |
! | AGACTATGTTTCTGAACAAC+AGG | + | chr7_1:73238916-73238935 | None:intergenic | 35.0% |
!! | TTCTGAAATTGCTTCTGAGA+AGG | - | chr7_1:73238978-73238997 | Msa1036800:CDS | 35.0% |
! | TGAGAAGGTTCTTGATGATA+TGG | - | chr7_1:73238993-73239012 | Msa1036800:CDS | 35.0% |
! | AGGTTCTTGATGATATGGTT+AGG | - | chr7_1:73238998-73239017 | Msa1036800:CDS | 35.0% |
ATTGAGAATAATCAGGGTGA+TGG | - | chr7_1:73239024-73239043 | Msa1036800:CDS | 35.0% | |
! | AAGGGCTTTTCAGTTGATTA+GGG | - | chr7_1:73239059-73239078 | Msa1036800:CDS | 35.0% |
! | TTTTCAGTTGATTAGGGCTT+GGG | - | chr7_1:73239065-73239084 | Msa1036800:CDS | 35.0% |
GAAAAACAAAGCAAGAAGGA+AGG | + | chr7_1:73239165-73239184 | None:intergenic | 35.0% | |
GTCTGAAAAACAAAGCAAGA+AGG | + | chr7_1:73239169-73239188 | None:intergenic | 35.0% | |
CACTGACACTTCTAATTGAA+GGG | + | chr7_1:73239261-73239280 | None:intergenic | 35.0% | |
ACCAATTATGGGTCTATTGT+AGG | - | chr7_1:73239662-73239681 | Msa1036800:CDS | 35.0% | |
ATATAGCTACTATCGGTACT+TGG | + | chr7_1:73239825-73239844 | None:intergenic | 35.0% | |
!! | ATCCCGGTATGAAGTTTTAT+TGG | + | chr7_1:73239943-73239962 | None:intergenic | 35.0% |
CGAAAAAATGCCATATGGTA+CGG | + | chr7_1:73240056-73240075 | None:intergenic | 35.0% | |
! | GGAAAGGCTTTGATTGTTAT+TGG | + | chr7_1:73240101-73240120 | None:intergenic | 35.0% |
GTATAACCAATCCCACTTAA+TGG | + | chr7_1:73240123-73240142 | None:intergenic | 35.0% | |
!! | AAGATAGTTGGGTCTTATTG+TGG | + | chr7_1:73240330-73240349 | None:intergenic | 35.0% |
ACCAGCAATGAAAACATGTT+CGG | + | chr7_1:73240419-73240438 | None:intergenic | 35.0% | |
TTCTGTAGAAAGATATCCCA+AGG | + | chr7_1:73241101-73241120 | None:intergenic | 35.0% | |
GATTACAGAGTTTGAAAGGA+AGG | - | chr7_1:73241266-73241285 | Msa1036800:intron | 35.0% | |
TTACAGAGTTTGAAAGGAAG+GGG | - | chr7_1:73241268-73241287 | Msa1036800:intron | 35.0% | |
AAGTGCTTATCAACATCCTT+TGG | - | chr7_1:73241348-73241367 | Msa1036800:intron | 35.0% | |
!! | AACTAACTGCTTTTCATGCA+AGG | - | chr7_1:73241665-73241684 | Msa1036800:intron | 35.0% |
TAGATTTCAGGATCTATCCT+TGG | + | chr7_1:73241736-73241755 | None:intergenic | 35.0% | |
ATATATATATGCAAGGTCCG+GGG | + | chr7_1:73241825-73241844 | None:intergenic | 35.0% | |
! | AGATTTAACTTTGAGTCTGC+TGG | - | chr7_1:73242027-73242046 | Msa1036800:CDS | 35.0% |
GCAATCACTCTTTCTTATCA+AGG | - | chr7_1:73242060-73242079 | Msa1036800:CDS | 35.0% | |
CTTTCTTATCAAGGAGATTG+TGG | - | chr7_1:73242069-73242088 | Msa1036800:CDS | 35.0% | |
! | TTTCGTGCTATCCACTATTT+TGG | + | chr7_1:73242425-73242444 | None:intergenic | 35.0% |
TATTACACGCCTACACAATA+TGG | + | chr7_1:73242546-73242565 | None:intergenic | 35.0% | |
ACCCTTATAGAAGGAACTAT+AGG | + | chr7_1:73242576-73242595 | None:intergenic | 35.0% | |
!!! | ATTTTACGTGGCTTTGTTGG+AGG | + | chr7_1:73238491-73238510 | None:intergenic | 40.0% |
! | CGAATGGTGTTTGTTAGTGA+AGG | + | chr7_1:73238603-73238622 | None:intergenic | 40.0% |
!! | AGCTAGCTTTGATTTGTCCA+TGG | + | chr7_1:73238653-73238672 | None:intergenic | 40.0% |
!! | TCATTTTGCCGCTTACGATT+CGG | + | chr7_1:73238717-73238736 | None:intergenic | 40.0% |
ACCAACACCTGAATCCAAAA+TGG | - | chr7_1:73238753-73238772 | Msa1036800:CDS | 40.0% | |
! | ACCATTTTGGATTCAGGTGT+TGG | + | chr7_1:73238757-73238776 | None:intergenic | 40.0% |
! | AGAATAATCAGGGTGATGGT+GGG | - | chr7_1:73239028-73239047 | Msa1036800:CDS | 40.0% |
!! | TGATGGTGGGAATAGAAGAA+GGG | - | chr7_1:73239041-73239060 | Msa1036800:CDS | 40.0% |
! | GAAGGGCTTTTCAGTTGATT+AGG | - | chr7_1:73239058-73239077 | Msa1036800:CDS | 40.0% |
! | CTTTTCAGTTGATTAGGGCT+TGG | - | chr7_1:73239064-73239083 | Msa1036800:CDS | 40.0% |
TTTCAGTTGATTAGGGCTTG+GGG | - | chr7_1:73239066-73239085 | Msa1036800:CDS | 40.0% | |
AACAAAGCAAGAAGGAAGGA+AGG | + | chr7_1:73239161-73239180 | None:intergenic | 40.0% | |
TGTCCAACATGTATCAGTGT+CGG | + | chr7_1:73239226-73239245 | None:intergenic | 40.0% | |
! | GCACTGACACTTCTAATTGA+AGG | + | chr7_1:73239262-73239281 | None:intergenic | 40.0% |
TGTGAGCTGTGATCAAACTA+AGG | - | chr7_1:73239552-73239571 | Msa1036800:intron | 40.0% | |
GTGAGCTGTGATCAAACTAA+GGG | - | chr7_1:73239553-73239572 | Msa1036800:intron | 40.0% | |
TGAGCTGTGATCAAACTAAG+GGG | - | chr7_1:73239554-73239573 | Msa1036800:intron | 40.0% | |
!! | AGAGGGTGTTCTATTGATAG+AGG | - | chr7_1:73239629-73239648 | Msa1036800:CDS | 40.0% |
CTATTGATAGAGGTCAGAGT+TGG | - | chr7_1:73239639-73239658 | Msa1036800:CDS | 40.0% | |
GTCAGAGTTGGACCAATTAT+GGG | - | chr7_1:73239651-73239670 | Msa1036800:CDS | 40.0% | |
GCCTACAATAGACCCATAAT+TGG | + | chr7_1:73239666-73239685 | None:intergenic | 40.0% | |
! | GTTTGAGATTCCGTACCATA+TGG | - | chr7_1:73240043-73240062 | Msa1036800:intron | 40.0% |
TCAAAGCCTTTCCCATTAAG+TGG | - | chr7_1:73240108-73240127 | Msa1036800:intron | 40.0% | |
CAAAGCCTTTCCCATTAAGT+GGG | - | chr7_1:73240109-73240128 | Msa1036800:intron | 40.0% | |
CATAGAACATGATCCATGAC+AGG | + | chr7_1:73240173-73240192 | None:intergenic | 40.0% | |
!! | GTTGGGTCTTATTGTGGTTT+GGG | + | chr7_1:73240324-73240343 | None:intergenic | 40.0% |
!! | AGTTGGGTCTTATTGTGGTT+TGG | + | chr7_1:73240325-73240344 | None:intergenic | 40.0% |
! | ACCGAACATGTTTTCATTGC+TGG | - | chr7_1:73240415-73240434 | Msa1036800:intron | 40.0% |
GTCTAGACATATCCTAAGAC+AGG | + | chr7_1:73240675-73240694 | None:intergenic | 40.0% | |
TATCATTTACCAGGTGACCT+TGG | - | chr7_1:73241081-73241100 | Msa1036800:intron | 40.0% | |
ATCATTTACCAGGTGACCTT+GGG | - | chr7_1:73241082-73241101 | Msa1036800:intron | 40.0% | |
TTGATAAGCACTTGACTCTG+AGG | + | chr7_1:73241341-73241360 | None:intergenic | 40.0% | |
!! | AGAGAAGAAAGAGCATCTTG+TGG | - | chr7_1:73241471-73241490 | Msa1036800:intron | 40.0% |
CCTCCGGTTTAATAGATTTC+AGG | + | chr7_1:73241748-73241767 | None:intergenic | 40.0% | |
CCTGAAATCTATTAAACCGG+AGG | - | chr7_1:73241745-73241764 | Msa1036800:intron | 40.0% | |
GTTATCTTTGAATGCAGCAG+TGG | - | chr7_1:73241859-73241878 | Msa1036800:intron | 40.0% | |
AAGTGTCTCTTCGTCATTTG+CGG | + | chr7_1:73242101-73242120 | None:intergenic | 40.0% | |
!! | TGACGAAGAGACACTTTTTG+AGG | - | chr7_1:73242105-73242124 | Msa1036800:CDS | 40.0% |
! | GCAGTTGGTTTCTAAGTATG+AGG | - | chr7_1:73242153-73242172 | Msa1036800:CDS | 40.0% |
GGTTTCTAAGTATGAGGAGT+TGG | - | chr7_1:73242159-73242178 | Msa1036800:CDS | 40.0% | |
!! | TCACGAGTGTTTGACTTTTG+AGG | + | chr7_1:73242361-73242380 | None:intergenic | 40.0% |
!! | CTCATTCGGTATTAGTCTTG+AGG | + | chr7_1:73242468-73242487 | None:intergenic | 40.0% |
ATACCGAATGAGAAAAGCGA+AGG | - | chr7_1:73242476-73242495 | Msa1036800:CDS | 40.0% | |
!! | CAACCTTCGCTTTTCTCATT+CGG | + | chr7_1:73242482-73242501 | None:intergenic | 40.0% |
TGTTGCTGTCCATATTGTGT+AGG | - | chr7_1:73242534-73242553 | Msa1036800:five_prime_UTR | 40.0% | |
ATAAGGGTGATTATATCCCG+AGG | - | chr7_1:73242588-73242607 | Msa1036800:five_prime_UTR | 40.0% | |
ACACCATTCGAATCCGATCT+AGG | - | chr7_1:73238613-73238632 | Msa1036800:three_prime_UTR | 45.0% | |
CACCATTCGAATCCGATCTA+GGG | - | chr7_1:73238614-73238633 | Msa1036800:three_prime_UTR | 45.0% | |
AACCCTAGATCGGATTCGAA+TGG | + | chr7_1:73238619-73238638 | None:intergenic | 45.0% | |
GTCAGACAGAAACCCTAGAT+CGG | + | chr7_1:73238629-73238648 | None:intergenic | 45.0% | |
AACATGAGCCGAATCGTAAG+CGG | - | chr7_1:73238706-73238725 | Msa1036800:CDS | 45.0% | |
!! | TGGATTCAGGTGTTGGTGTT+TGG | + | chr7_1:73238750-73238769 | None:intergenic | 45.0% |
! | TCGTCGACCATTTTGGATTC+AGG | + | chr7_1:73238763-73238782 | None:intergenic | 45.0% |
!! | TGTTGCTTCGTCGACCATTT+TGG | + | chr7_1:73238770-73238789 | None:intergenic | 45.0% |
AATGGTCGACGAAGCAACAT+CGG | - | chr7_1:73238771-73238790 | Msa1036800:CDS | 45.0% | |
CTGAGATTCATGCCCCAATT+TGG | + | chr7_1:73238811-73238830 | None:intergenic | 45.0% | |
GGCATGAATCTCAGAATCTG+CGG | - | chr7_1:73238817-73238836 | Msa1036800:CDS | 45.0% | |
! | GAGAATAATCAGGGTGATGG+TGG | - | chr7_1:73239027-73239046 | Msa1036800:CDS | 45.0% |
!! | GTGATGGTGGGAATAGAAGA+AGG | - | chr7_1:73239040-73239059 | Msa1036800:CDS | 45.0% |
AAGCAAGAAGGAAGGAAGGA+AGG | + | chr7_1:73239157-73239176 | None:intergenic | 45.0% | |
ACACCGACACTGATACATGT+TGG | - | chr7_1:73239220-73239239 | Msa1036800:intron | 45.0% | |
! | TAATTGAAGGGCGTGTTGTC+TGG | + | chr7_1:73239249-73239268 | None:intergenic | 45.0% |
GAGCTGTGATCAAACTAAGG+GGG | - | chr7_1:73239555-73239574 | Msa1036800:intron | 45.0% | |
AGCTGTGATCAAACTAAGGG+GGG | - | chr7_1:73239556-73239575 | Msa1036800:intron | 45.0% | |
GGTCAGAGTTGGACCAATTA+TGG | - | chr7_1:73239650-73239669 | Msa1036800:CDS | 45.0% | |
GGCTTAGGCTACCCTTATTA+AGG | - | chr7_1:73239706-73239725 | Msa1036800:CDS | 45.0% | |
CCAATCCCACTTAATGGGAA+AGG | + | chr7_1:73240117-73240136 | None:intergenic | 45.0% | |
CCTTTCCCATTAAGTGGGAT+TGG | - | chr7_1:73240114-73240133 | Msa1036800:intron | 45.0% | |
CATTATGTCCTGTCCTGTCA+TGG | - | chr7_1:73240157-73240176 | Msa1036800:intron | 45.0% | |
AACATGATCCATGACAGGAC+AGG | + | chr7_1:73240168-73240187 | None:intergenic | 45.0% | |
GACATATCCTAAGACAGGCT+TGG | + | chr7_1:73240670-73240689 | None:intergenic | 45.0% | |
! | TACATATCCTAAGACGGGCT+TGG | + | chr7_1:73240824-73240843 | None:intergenic | 45.0% |
ACTTCTGCAGACAAACTCTG+CGG | + | chr7_1:73241047-73241066 | None:intergenic | 45.0% | |
AAAGATATCCCAAGGTCACC+TGG | + | chr7_1:73241093-73241112 | None:intergenic | 45.0% | |
!! | GAAGGCGTCATATTTGGAAG+AGG | + | chr7_1:73241165-73241184 | None:intergenic | 45.0% |
! | AGGAGCACAAGACTATGTCA+TGG | + | chr7_1:73241202-73241221 | None:intergenic | 45.0% |
GAATCACTTGACATGACGAC+AGG | - | chr7_1:73241292-73241311 | Msa1036800:intron | 45.0% | |
TATCTTTCAGGGGGATCCAA+AGG | + | chr7_1:73241367-73241386 | None:intergenic | 45.0% | |
TGGAACTGGGTATCTTTCAG+GGG | + | chr7_1:73241377-73241396 | None:intergenic | 45.0% | |
CTGGAACTGGGTATCTTTCA+GGG | + | chr7_1:73241378-73241397 | None:intergenic | 45.0% | |
! | TCTGGAACTGGGTATCTTTC+AGG | + | chr7_1:73241379-73241398 | None:intergenic | 45.0% |
TTCTTCTCTTCAGCTGATGC+TGG | + | chr7_1:73241460-73241479 | None:intergenic | 45.0% | |
GGCAGAGCCAAAACCTTTAA+AGG | - | chr7_1:73241540-73241559 | Msa1036800:intron | 45.0% | |
GGAAGCTTCTCAAAGTTCAG+AGG | - | chr7_1:73242180-73242199 | Msa1036800:CDS | 45.0% | |
!! | CACAAAGTGTTGACACTGCA+GGG | - | chr7_1:73242203-73242222 | Msa1036800:CDS | 45.0% |
CTGTTCAAAACCCTTCCGAA+AGG | - | chr7_1:73242239-73242258 | Msa1036800:CDS | 45.0% | |
CTGTTCAAAACCCCAGTGAA+AGG | - | chr7_1:73242275-73242294 | Msa1036800:CDS | 45.0% | |
TTCAACATGACTAACCCCCT+CGG | + | chr7_1:73242401-73242420 | None:intergenic | 45.0% | |
!! | TCGGTATTAGTCTTGAGGCT+AGG | + | chr7_1:73242463-73242482 | None:intergenic | 45.0% |
GTCGTCGTCGAGATAGGAAT+GGG | + | chr7_1:73238462-73238481 | None:intergenic | 50.0% | |
AGGGTTTCTGTCTGACTCCA+TGG | - | chr7_1:73238633-73238652 | Msa1036800:three_prime_UTR | 50.0% | |
! | AGCTAGCTCAATTCGGTGAG+AGG | - | chr7_1:73238665-73238684 | Msa1036800:exon | 50.0% |
! | GCTTACGATTCGGCTCATGT+TGG | + | chr7_1:73238707-73238726 | None:intergenic | 50.0% |
ACAGGCTTGGAAGCCAAAGT+TGG | + | chr7_1:73240657-73240676 | None:intergenic | 50.0% | |
TTGGCTTCCAAGCCTGTCTT+AGG | - | chr7_1:73240660-73240679 | Msa1036800:intron | 50.0% | |
! | TCTGAGGCATACGGAATAGG+TGG | + | chr7_1:73241325-73241344 | None:intergenic | 50.0% |
!! | GACTCTGAGGCATACGGAAT+AGG | + | chr7_1:73241328-73241347 | None:intergenic | 50.0% |
!! | GCACTTGACTCTGAGGCATA+CGG | + | chr7_1:73241334-73241353 | None:intergenic | 50.0% |
GGAACTGGGTATCTTTCAGG+GGG | + | chr7_1:73241376-73241395 | None:intergenic | 50.0% | |
AGATACCCAGTTCCAGAAGC+AGG | - | chr7_1:73241382-73241401 | Msa1036800:intron | 50.0% | |
GATACCCAGTTCCAGAAGCA+GGG | - | chr7_1:73241383-73241402 | Msa1036800:intron | 50.0% | |
TCTCTTCAGCTGATGCTGGT+TGG | + | chr7_1:73241456-73241475 | None:intergenic | 50.0% | |
CAATGATGAGCTGCAGCAGT+TGG | - | chr7_1:73242138-73242157 | Msa1036800:CDS | 50.0% | |
!! | GCACAAAGTGTTGACACTGC+AGG | - | chr7_1:73242202-73242221 | Msa1036800:CDS | 50.0% |
AGCTTCCACTTCACGCCTTT+CGG | + | chr7_1:73242257-73242276 | None:intergenic | 50.0% | |
TCACCTTCACGCCTTTCACT+GGG | + | chr7_1:73242289-73242308 | None:intergenic | 50.0% | |
ATCACCTTCACGCCTTTCAC+TGG | + | chr7_1:73242290-73242309 | None:intergenic | 50.0% | |
AGCAGCTTCTGACAGCTCTT+CGG | + | chr7_1:73242317-73242336 | None:intergenic | 50.0% | |
GGTCGTCGTCGAGATAGGAA+TGG | + | chr7_1:73238463-73238482 | None:intergenic | 55.0% | |
GGCATGTGTTGAGCAGACCT+TGG | + | chr7_1:73240303-73240322 | None:intergenic | 55.0% | |
ACGGGCTTGGAAGCCAAAGT+TGG | + | chr7_1:73240811-73240830 | None:intergenic | 55.0% | |
TTGGCTTCCAAGCCCGTCTT+AGG | - | chr7_1:73240814-73240833 | Msa1036800:intron | 55.0% | |
!! | GTAGCCCTGCTTCTGGAACT+GGG | + | chr7_1:73241390-73241409 | None:intergenic | 55.0% |
!! | TGTAGCCCTGCTTCTGGAAC+TGG | + | chr7_1:73241391-73241410 | None:intergenic | 55.0% |
AGAGCATGTAGCCCTGCTTC+TGG | + | chr7_1:73241397-73241416 | None:intergenic | 55.0% | |
AGGGCTACATGCTCTTGCTC+TGG | - | chr7_1:73241402-73241421 | Msa1036800:intron | 55.0% | |
TGACACTGCAGGGCATGATG+CGG | - | chr7_1:73242213-73242232 | Msa1036800:CDS | 55.0% | |
CCACTTCACGCCTTTCGGAA+GGG | + | chr7_1:73242252-73242271 | None:intergenic | 55.0% | |
TCCACTTCACGCCTTTCGGA+AGG | + | chr7_1:73242253-73242272 | None:intergenic | 55.0% | |
! | AACCCCAGTGAAAGGCGTGA+AGG | - | chr7_1:73242283-73242302 | Msa1036800:CDS | 55.0% |
CACCTTCACGCCTTTCACTG+GGG | + | chr7_1:73242288-73242307 | None:intergenic | 55.0% | |
AGTCCCTGTTGATGCAACCG+AGG | - | chr7_1:73242381-73242400 | Msa1036800:CDS | 55.0% | |
GTCCCTGTTGATGCAACCGA+GGG | - | chr7_1:73242382-73242401 | Msa1036800:CDS | 55.0% | |
TCCCTGTTGATGCAACCGAG+GGG | - | chr7_1:73242383-73242402 | Msa1036800:CDS | 55.0% | |
CCTGTGGTCGTCGTCGAGAT+AGG | + | chr7_1:73238468-73238487 | None:intergenic | 60.0% | |
CCTATCTCGACGACGACCAC+AGG | - | chr7_1:73238465-73238484 | Msa1036800:three_prime_UTR | 60.0% | |
!! | GTGGCTTTGTTGGAGGCCTG+TGG | + | chr7_1:73238484-73238503 | None:intergenic | 60.0% |
TAGGGCTTGGGGTGAGTCTC+AGG | - | chr7_1:73239077-73239096 | Msa1036800:CDS | 60.0% | |
AGTGGTCGGGGTTTGAACCC+CGG | - | chr7_1:73241805-73241824 | Msa1036800:intron | 60.0% | |
! | CCCTTCCGAAAGGCGTGAAG+TGG | - | chr7_1:73242249-73242268 | Msa1036800:CDS | 60.0% |
CCCCCTCGGTTGCATCAACA+GGG | + | chr7_1:73242387-73242406 | None:intergenic | 60.0% | |
CCCTGTTGATGCAACCGAGG+GGG | - | chr7_1:73242384-73242403 | Msa1036800:CDS | 60.0% | |
ACCCCCTCGGTTGCATCAAC+AGG | + | chr7_1:73242388-73242407 | None:intergenic | 60.0% | |
TCGGCTCATGTTGGCGCTGC+TGG | + | chr7_1:73238698-73238717 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 73238448 | 73242709 | 73238448 | ID=Msa1036800;Name=Msa1036800 |
chr7_1 | mRNA | 73238448 | 73242709 | 73238448 | ID=Msa1036800-mRNA-1;Parent=Msa1036800;Name=Msa1036800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204|1|1|1|1|1|3|223|411 |
chr7_1 | exon | 73238448 | 73239132 | 73238448 | ID=Msa1036800-mRNA-1:exon:17989;Parent=Msa1036800-mRNA-1 |
chr7_1 | exon | 73239596 | 73239883 | 73239596 | ID=Msa1036800-mRNA-1:exon:17988;Parent=Msa1036800-mRNA-1 |
chr7_1 | exon | 73242020 | 73242709 | 73242020 | ID=Msa1036800-mRNA-1:exon:17987;Parent=Msa1036800-mRNA-1 |
chr7_1 | five_prime_UTR | 73242506 | 73242709 | 73242506 | ID=Msa1036800-mRNA-1:five_prime_utr;Parent=Msa1036800-mRNA-1 |
chr7_1 | CDS | 73242020 | 73242505 | 73242020 | ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1 |
chr7_1 | CDS | 73239596 | 73239883 | 73239596 | ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1 |
chr7_1 | CDS | 73238671 | 73239132 | 73238671 | ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1 |
chr7_1 | three_prime_UTR | 73238448 | 73238670 | 73238448 | ID=Msa1036800-mRNA-1:three_prime_utr;Parent=Msa1036800-mRNA-1 |
Gene Sequence |
Protein sequence |