AlfalfaGEDB | Msa1036800

M. sativa cultivar zhongmu-4 / Msa1036800

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032182 GO:0043130 GO:0044424 GO:0044464
PFAM: PF00790.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036800	XP_013449904.1	95.272	423	7	2	1	411	1	422	0.0	814

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036800	sp\|Q9LNC6\|TOL2_ARATH	52.406	374	158	5	1	367	1	361	1.42e-121	360

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036800	A0A072U2J4	95.272	423	7	2	1	411	1	422	0.0	814

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa1036800	0.801652	8.137823e-49	-8.615850e-47
Msa0020390	Msa1036800	0.820758	5.790868e-53	-8.615850e-47
Msa0038870	Msa1036800	0.811719	6.083164e-51	-8.615850e-47
Msa0071250	Msa1036800	0.811660	6.266214e-51	-8.615850e-47
Msa0086420	Msa1036800	0.802891	4.523385e-49	-8.615850e-47
Msa0090550	Msa1036800	0.820998	5.098718e-53	-8.615850e-47
Msa0116380	Msa1036800	0.800987	1.113606e-48	-8.615850e-47
Msa0118540	Msa1036800	0.800382	1.479302e-48	-8.615850e-47
Msa0148080	Msa1036800	0.816239	6.127121e-52	-8.615850e-47
Msa0160960	Msa1036800	0.804222	2.396369e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036800	MtrunA17_Chr7g0261361	95.272	423	7	2	1	411	1	422	0.0	814
Msa1036800	MtrunA17_Chr5g0395341	37.637	364	195	7	5	352	8	355	1.09e-69	225
Msa1036800	MtrunA17_Chr4g0039841	40.248	323	174	7	3	311	33	350	4.53e-55	188
Msa1036800	MtrunA17_Chr8g0388361	95.385	65	3	0	57	121	1	65	5.45e-38	131
Msa1036800	MtrunA17_Chr7g0244381	26.144	306	204	8	43	342	15	304	1.70e-23	103
Msa1036800	MtrunA17_Chr3g0139891	28.750	320	182	13	41	341	5	297	2.02e-22	99.8
Msa1036800	MtrunA17_Chr1g0157701	26.230	366	217	14	41	382	5	341	7.07e-22	98.2
Msa1036800	MtrunA17_Chr3g0125541	29.167	288	178	10	43	323	10	278	3.48e-21	95.5
Msa1036800	MtrunA17_Chr3g0131021	23.427	286	193	9	39	317	3	269	2.06e-14	74.7
Msa1036800	MtrunA17_Chr8g0385261	23.793	290	187	10	39	316	3	270	3.86e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1036800	AT1G06210.1	52.406	374	158	5	1	367	1	361	1.45e-122	360
Msa1036800	AT1G06210.2	56.537	283	100	5	1	269	1	274	3.69e-98	294
Msa1036800	AT5G16880.4	41.509	318	162	5	5	310	8	313	2.28e-74	238
Msa1036800	AT5G16880.1	41.509	318	162	5	5	310	8	313	2.28e-74	238
Msa1036800	AT5G16880.2	41.509	318	162	5	5	310	8	313	2.28e-74	238
Msa1036800	AT5G16880.3	40.909	308	142	8	5	293	8	294	3.09e-66	213
Msa1036800	AT4G32760.3	28.826	281	170	10	41	310	5	266	6.77e-23	100
Msa1036800	AT4G32760.2	28.826	281	170	10	41	310	5	266	1.32e-22	100
Msa1036800	AT4G32760.1	28.826	281	170	10	41	310	5	266	1.42e-22	100
Msa1036800	AT1G21380.1	27.106	273	176	8	43	309	10	265	8.78e-22	97.8

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Find 116 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATCTGAACCAAAT+TGG	0.209591	7_1:-73242341	Msa1036800:CDS
AAATCAAAGCTAGCTCAATT+CGG	0.491882	7_1:-73242477	Msa1036800:CDS
AACATGAGCCGAATCGTAAG+CGG	0.628012	7_1:-73242429	Msa1036800:CDS
AACATTATCTGAACCAAATT+GGG	0.287314	7_1:-73242340	Msa1036800:CDS
AACCCCAGTGAAAGGCGTGA+AGG	0.616642	7_1:-73238852	Msa1036800:CDS
AACCCTAGATCGGATTCGAA+TGG	0.634318	7_1:+73242519	None:intergenic
AACCTATAGTTCCTTCTATA+AGG	0.217376	7_1:-73238564	Msa1036800:three_prime_UTR
AAGTGCTTATCAACATCCTT+TGG	0.427379	7_1:-73239787	Msa1036800:CDS
AAGTGTCTCTTCGTCATTTG+CGG	0.424585	7_1:+73239037	None:intergenic
AAGTTTACCTTTAAAGGTTT+TGG	0.279646	7_1:+73239588	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGGGAAAGTGATAAC+TGG	+	chr7_1:73238562-73238581	None:intergenic	30.0%
GTTATGGGAATGTGAAAAAT+GGG	+	chr7_1:73238576-73238595	None:intergenic	30.0%
TGTTATGGGAATGTGAAAAA+TGG	+	chr7_1:73238577-73238596	None:intergenic	30.0%
GTTAGTGAAGGTTATGTTAT+GGG	+	chr7_1:73238591-73238610	None:intergenic	30.0%
TGTTAGTGAAGGTTATGTTA+TGG	+	chr7_1:73238592-73238611	None:intergenic	30.0%
AAATCAAAGCTAGCTCAATT+CGG	-	chr7_1:73238658-73238677	Msa1036800:exon	30.0%
ACATTATCTGAACCAAATTG+GGG	-	chr7_1:73238796-73238815	Msa1036800:CDS	30.0%
ATATAAGTCTGACTGAAAAC+AGG	+	chr7_1:73239117-73239136	None:intergenic	30.0%
GGGTCTCATAAAATTATAGT+TGG	-	chr7_1:73239405-73239424	Msa1036800:intron	30.0%
TTAGTTAGAACTATGATGAG+AGG	-	chr7_1:73239611-73239630	Msa1036800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	73238448	73242709	73238448	ID=Msa1036800;Name=Msa1036800
chr7_1	mRNA	73238448	73242709	73238448	ID=Msa1036800-mRNA-1;Parent=Msa1036800;Name=Msa1036800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=204\|1\|1\|1\|1\|1\|3\|223\|411
chr7_1	exon	73238448	73239132	73238448	ID=Msa1036800-mRNA-1:exon:17989;Parent=Msa1036800-mRNA-1
chr7_1	exon	73239596	73239883	73239596	ID=Msa1036800-mRNA-1:exon:17988;Parent=Msa1036800-mRNA-1
chr7_1	exon	73242020	73242709	73242020	ID=Msa1036800-mRNA-1:exon:17987;Parent=Msa1036800-mRNA-1
chr7_1	five_prime_UTR	73242506	73242709	73242506	ID=Msa1036800-mRNA-1:five_prime_utr;Parent=Msa1036800-mRNA-1
chr7_1	CDS	73242020	73242505	73242020	ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1	CDS	73239596	73239883	73239596	ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1	CDS	73238671	73239132	73238671	ID=Msa1036800-mRNA-1:cds;Parent=Msa1036800-mRNA-1
chr7_1	three_prime_UTR	73238448	73238670	73238448	ID=Msa1036800-mRNA-1:three_prime_utr;Parent=Msa1036800-mRNA-1

Gene Sequence

>Msa1036800

ATGGACAAATCAAAGCTAGCTCAATTCGGTGAGAGGCTCAAAACCAGCAGCGCCAACATGAGCCGAATCGTAAGCGGCAAAATGAAAGAAATTCTCCAAACACCAACACCTGAATCCAAAATGGTCGACGAAGCAACATCGGAAACATTATCTGAACCAAATTGGGGCATGAATCTCAGAATCTGCGGCCTTATTAACGCCGAAGAGTTTAACGGTTCTGAAATAGTGAAAGCTATTAAGAGAAAGATTAATCATAAGAGTCCTGTTGTTCAGAAACATAGTCTTGATTTGTTGGAAACTTGTGCTATGAATTGTGATAAAGTGTTTTCTGAAATTGCTTCTGAGAAGGTTCTTGATGATATGGTTAGGTTGATTGAGAATAATCAGGGTGATGGTGGGAATAGAAGAAGGGCTTTTCAGTTGATTAGGGCTTGGGGTGAGTCTCAGGATATTGCTTATCTTCCTGTTTTCAGTCAGACTTATATGAGTTTGAAAGGAAGGGGTGAATCACTTGACATGACGACAGGAAATTCTCCACCTATTCCGTATGCCTCAGAGTCAAGTGCTTATCAACATCCTTTGGATCCCCCTGAAAGATACCCAGTTCCAGAAGCAGGGCTACATGCTCTTGCTCTGGATGACTCAGCAGCTTTCTTTTCTGATCACCAACCAGCATCAGCTGAAGAGAAGAAAGAGCATCTTGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTAAAGGAAGATTTAACTTTGAGTCTGCTGGATAAGTGCAAGCAATCACTCTTTCTTATCAAGGAGATTGTGGAAAGCACCGCAAATGACGAAGAGACACTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAGCAGTTGGTTTCTAAGTATGAGGAGTTGGAAGCTTCTCAAAGTTCAGAGGCACAAAGTGTTGACACTGCAGGGCATGATGCGGAAGCTGTTCAAAACCCTTCCGAAAGGCGTGAAGTGGAAGCTGTTCAAAACCCCAGTGAAAGGCGTGAAGGTGATGAGTCCGAAGAGCTGTCAGAAGCTGCTCAGAGTCTTGATCGAAAGCTGCCTCAAAAGTCAAACACTCGTGAAGTCCCTGTTGATGCAACCGAGGGGGTTAGTCATGTTGAAACCAAAATAGTGGATAGCACGAAAGAGAAGAATGTTGAACCTAGCCTCAAGACTAATACCGAATGA

Protein sequence

>Msa1036800

MDKSKLAQFGERLKTSSANMSRIVSGKMKEILQTPTPESKMVDEATSETLSEPNWGMNLRICGLINAEEFNGSEIVKAIKRKINHKSPVVQKHSLDLLETCAMNCDKVFSEIASEKVLDDMVRLIENNQGDGGNRRRAFQLIRAWGESQDIAYLPVFSQTYMSLKGRGESLDMTTGNSPPIPYASESSAYQHPLDPPERYPVPEAGLHALALDDSAAFFSDHQPASAEEKKEHLVVARNSLELLSSILNSEAEPKPLKEDLTLSLLDKCKQSLFLIKEIVESTANDEETLFEALYLNDELQQLVSKYEELEASQSSEAQSVDTAGHDAEAVQNPSERREVEAVQNPSERREGDESEELSEAAQSLDRKLPQKSNTREVPVDATEGVSHVETKIVDSTKEKNVEPSLKTNTE*