AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079740 MtrunA17_Chr7g0265001 98.131 214 4 0 1 214 1 214 3.81e-153 423
Msa1079740 MtrunA17_Chr1g0180291 84.577 201 30 1 13 213 11 210 2.04e-124 350
Msa1079740 MtrunA17_Chr1g0197331 69.767 215 61 3 1 214 1 212 5.39e-105 301
Msa1079740 MtrunA17_Chr1g0159481 67.822 202 64 1 13 214 14 214 1.77e-104 300
Msa1079740 MtrunA17_Chr8g0384311 65.728 213 68 3 1 213 1 208 2.24e-103 297
Msa1079740 MtrunA17_Chr3g0130271 68.000 200 62 2 14 212 10 208 5.07e-101 291
Msa1079740 MtrunA17_Chr7g0250531 50.495 202 95 3 13 214 5 201 2.21e-61 190
Msa1079740 MtrunA17_Chr4g0055651 49.010 202 98 3 13 214 5 201 2.81e-61 190
Msa1079740 MtrunA17_Chr8g0335471 49.010 202 99 3 13 214 5 202 9.29e-61 189
Msa1079740 MtrunA17_Chr1g0182321 48.571 210 96 5 11 213 10 214 1.17e-58 184
Msa1079740 MtrunA17_Chr1g0182301 48.095 210 97 5 11 213 10 214 2.95e-58 182
Msa1079740 MtrunA17_Chr1g0212521 47.343 207 99 5 13 213 12 214 3.53e-57 180
Msa1079740 MtrunA17_Chr2g0276931 48.529 204 101 3 10 213 3 202 1.32e-56 178
Msa1079740 MtrunA17_Chr4g0030911 46.860 207 99 5 13 213 12 213 7.92e-56 176
Msa1079740 MtrunA17_Chr7g0263071 52.941 170 77 3 13 181 12 179 2.24e-54 173
Msa1079740 MtrunA17_Chr6g0458081 50.877 171 78 4 13 181 3 169 1.55e-51 165
Msa1079740 MtrunA17_Chr2g0327911 42.857 203 114 2 12 213 11 212 7.53e-51 164
Msa1079740 MtrunA17_Chr2g0290891 43.868 212 98 6 17 214 7 211 1.98e-49 160
Msa1079740 MtrunA17_Chr8g0349711 48.780 164 82 2 16 179 6 167 2.65e-49 160
Msa1079740 MtrunA17_Chr4g0032201 47.674 172 88 2 13 184 9 178 2.26e-47 155
Msa1079740 MtrunA17_Chr2g0283131 42.723 213 105 4 13 214 10 216 9.37e-47 153
Msa1079740 MtrunA17_Chr8g0349681 41.935 217 120 3 2 214 370 584 6.06e-46 160
Msa1079740 MtrunA17_Chr8g0349681 46.341 164 86 2 13 176 172 333 2.34e-44 155
Msa1079740 MtrunA17_Chr8g0349681 45.963 161 85 2 16 176 13 171 4.05e-43 152
Msa1079740 MtrunA17_Chr2g0315551 42.857 217 115 4 5 214 2 216 7.91e-46 151
Msa1079740 MtrunA17_Chr4g0046261 41.784 213 107 4 13 214 10 216 1.01e-45 150
Msa1079740 MtrunA17_Chr1g0189361 41.121 214 111 5 14 214 12 223 2.85e-45 150
Msa1079740 MtrunA17_Chr6g0482721 44.231 208 107 4 14 214 10 215 5.22e-45 149
Msa1079740 MtrunA17_Chr2g0319951 41.743 218 117 3 5 214 2 217 6.22e-45 149
Msa1079740 MtrunA17_Chr2g0276941 40.991 222 120 5 1 214 1 219 1.32e-44 148
Msa1079740 MtrunA17_Chr4g0040781 41.315 213 108 4 13 214 10 216 1.94e-44 147
Msa1079740 MtrunA17_Chr3g0112681 45.109 184 96 3 13 193 9 190 2.79e-44 147
Msa1079740 MtrunA17_Chr8g0381841 44.509 173 93 3 1 172 1 171 2.60e-43 145
Msa1079740 MtrunA17_Chr7g0275991 43.860 171 94 2 14 184 18 186 4.21e-43 144
Msa1079740 MtrunA17_Chr3g0123821 43.860 171 93 3 3 172 2 170 4.82e-43 144
Msa1079740 MtrunA17_Chr7g0234201 49.045 157 78 2 17 173 14 168 1.51e-42 142
Msa1079740 MtrunA17_Chr8g0351861 45.349 172 92 2 1 172 1 170 1.60e-42 143
Msa1079740 MtrunA17_Chr2g0325091 42.308 208 112 4 13 214 8 213 4.50e-42 141
Msa1079740 MtrunA17_Chr8g0346421 45.679 162 86 2 14 175 24 183 7.27e-42 141
Msa1079740 MtrunA17_Chr7g0231131 45.912 159 84 2 14 172 13 169 3.85e-41 139
Msa1079740 MtrunA17_Chr1g0174281 37.736 212 118 3 14 213 13 222 3.73e-40 137
Msa1079740 MtrunA17_Chr7g0214241 44.643 168 91 2 17 184 16 181 6.78e-40 136
Msa1079740 MtrunA17_Chr5g0433561 38.537 205 115 5 12 214 5 200 1.32e-39 134
Msa1079740 MtrunA17_Chr3g0109721 37.561 205 117 5 12 214 5 200 1.34e-38 132
Msa1079740 MtrunA17_Chr1g0199331 38.043 184 110 4 3 185 18 198 1.33e-37 129
Msa1079740 MtrunA17_Chr8g0392931 41.148 209 113 4 14 214 12 218 9.71e-37 128
Msa1079740 MtrunA17_Chr8g0390561 39.181 171 101 3 15 184 8 176 2.70e-36 126
Msa1079740 MtrunA17_Chr4g0055081 35.859 198 122 4 17 212 10 204 3.53e-35 123
Msa1079740 MtrunA17_Chr3g0123971 34.343 198 128 2 17 214 10 205 4.83e-35 123
Msa1079740 MtrunA17_Chr8g0382221 35.468 203 120 4 17 214 10 206 1.24e-34 122
Msa1079740 MtrunA17_Chr5g0400131 34.653 202 120 4 17 212 10 205 7.75e-34 120
Msa1079740 MtrunA17_Chr2g0331691 39.506 162 91 5 18 173 12 172 3.59e-28 105
Msa1079740 MtrunA17_Chr4g0034871 36.970 165 97 4 18 176 10 173 4.60e-28 105
Msa1079740 MtrunA17_Chr8g0383261 37.888 161 93 5 18 172 14 173 8.03e-27 102
Msa1079740 MtrunA17_Chr4g0004661 37.576 165 96 5 18 176 66 229 1.02e-26 103
Msa1079740 MtrunA17_Chr2g0325101 33.333 174 101 5 18 180 8 177 1.65e-26 100
Msa1079740 MtrunA17_Chr6g0466301 33.831 201 121 7 18 212 10 204 2.17e-26 100
Msa1079740 MtrunA17_Chr6g0465491 33.831 201 121 7 18 212 10 204 2.17e-26 100
Msa1079740 MtrunA17_Chr6g0486041 31.068 206 115 7 18 212 8 197 7.08e-26 99.8
Msa1079740 MtrunA17_Chr3g0117931 30.688 189 117 4 18 195 10 195 8.16e-26 99.4
Msa1079740 MtrunA17_Chr1g0201121 36.420 162 94 5 18 172 10 169 1.15e-25 99.0
Msa1079740 MtrunA17_Chr4g0037021 31.073 177 108 5 18 183 8 181 3.61e-25 97.4
Msa1079740 MtrunA17_Chr8g0371501 32.184 174 103 6 18 180 8 177 1.94e-23 92.8
Msa1079740 MtrunA17_Chr3g0138121 32.308 195 126 4 16 209 13 202 2.50e-23 93.2
Msa1079740 MtrunA17_Chr3g0138101 32.308 195 126 4 16 209 13 202 2.53e-23 93.2
Msa1079740 MtrunA17_Chr5g0405791 32.759 174 102 6 18 180 8 177 2.61e-23 92.4
Msa1079740 MtrunA17_Chr3g0138111 32.308 195 126 4 16 209 13 202 3.43e-23 92.8
Msa1079740 MtrunA17_Chr4g0046211 35.897 117 72 2 18 134 8 121 6.07e-20 82.4
Msa1079740 MtrunA17_Chr6g0465471 36.154 130 78 3 48 172 22 151 1.16e-14 69.7
Msa1079740 MtrunA17_Chr6g0466161 36.154 130 78 3 48 172 22 151 1.17e-14 69.7
Msa1079740 MtrunA17_Chr5g0443631 27.835 194 127 6 4 189 91 279 1.54e-14 70.9
Msa1079740 MtrunA17_Chr6g0466431 34.694 98 54 2 18 115 10 97 1.54e-14 67.0
Msa1079740 MtrunA17_Chr6g0465611 34.694 98 54 2 18 115 10 97 1.54e-14 67.0
Msa1079740 MtrunA17_Chr4g0024431 26.667 180 124 3 15 189 90 266 4.38e-13 66.6
Msa1079740 MtrunA17_Chr5g0434561 32.727 165 89 9 21 175 24 176 5.54e-13 64.7
Msa1079740 MtrunA17_Chr8g0383221 28.369 141 76 3 18 134 23 162 1.91e-11 62.4
Msa1079740 MtrunA17_Chr5g0401071 30.675 163 97 8 21 176 24 177 2.88e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079740 AT5G03530.2 82.710 214 33 2 1 214 1 210 9.70e-128 359
Msa1079740 AT5G03530.1 82.710 214 33 2 1 214 1 210 9.70e-128 359
Msa1079740 AT1G43890.3 70.588 204 56 2 1 204 1 200 2.49e-105 302
Msa1079740 AT1G43890.1 70.588 204 56 2 1 204 1 200 2.49e-105 302
Msa1079740 AT1G43890.2 70.588 204 56 2 1 204 1 200 2.49e-105 302
Msa1079740 AT3G09910.3 72.430 214 49 4 1 214 1 204 7.90e-103 296
Msa1079740 AT3G09910.1 72.430 214 49 4 1 214 1 204 7.90e-103 296
Msa1079740 AT3G09910.2 72.430 214 49 4 1 214 1 204 7.90e-103 296
Msa1079740 AT3G09910.5 76.536 179 38 2 1 179 1 175 3.69e-92 268
Msa1079740 AT3G09910.4 76.536 179 38 2 1 179 1 175 3.69e-92 268
Msa1079740 AT1G02130.1 50.495 202 96 3 13 214 5 202 1.14e-61 191
Msa1079740 AT3G11730.1 48.039 204 104 2 10 213 2 203 5.24e-59 184
Msa1079740 AT5G47200.1 49.010 202 98 3 13 214 5 201 1.51e-58 183
Msa1079740 AT4G17530.1 49.010 202 98 3 13 214 5 201 1.53e-58 183
Msa1079740 AT3G53610.2 46.860 207 100 5 13 213 12 214 1.59e-56 179
Msa1079740 AT3G53610.3 46.860 207 100 5 13 213 12 214 1.59e-56 179
Msa1079740 AT3G53610.1 46.860 207 100 5 13 213 12 214 1.59e-56 179
Msa1079740 AT5G59840.1 47.343 207 99 5 13 213 12 214 1.62e-56 179
Msa1079740 AT3G09900.1 46.919 211 101 5 11 214 10 216 2.01e-55 176
Msa1079740 AT5G03520.1 47.847 209 100 5 11 214 10 214 2.99e-55 175
Msa1079740 AT3G46060.2 46.860 207 100 5 13 213 12 214 5.80e-55 174
Msa1079740 AT3G46060.3 46.860 207 100 5 13 213 12 214 5.80e-55 174
Msa1079740 AT3G46060.1 46.860 207 100 5 13 213 12 214 5.80e-55 174
Msa1079740 AT4G35860.1 52.632 171 75 4 13 181 3 169 4.38e-54 172
Msa1079740 AT4G17160.1 45.545 202 101 5 17 213 7 204 1.97e-51 165
Msa1079740 AT4G17170.1 44.076 211 97 6 17 213 7 210 3.52e-50 162
Msa1079740 AT5G47520.1 42.654 211 109 4 14 214 12 220 1.38e-47 156
Msa1079740 AT1G18200.1 51.479 169 80 2 14 182 11 177 8.10e-47 154
Msa1079740 AT1G05810.1 44.175 206 105 4 17 214 13 216 1.30e-46 153
Msa1079740 AT5G45750.1 43.333 210 107 4 13 214 10 215 1.42e-46 153
Msa1079740 AT5G60860.1 42.723 213 105 4 13 214 10 216 3.94e-46 152
Msa1079740 AT1G05810.2 44.175 206 105 4 17 214 59 262 4.49e-46 153
Msa1079740 AT2G43130.1 41.827 208 114 3 12 214 8 213 4.54e-46 152
Msa1079740 AT1G16920.1 44.231 208 108 4 13 214 10 215 9.41e-46 151
Msa1079740 AT3G07410.1 41.935 217 116 3 6 214 2 216 1.30e-45 151
Msa1079740 AT1G07410.1 41.546 207 114 3 13 214 9 213 3.40e-45 150
Msa1079740 AT4G39990.1 40.476 210 114 4 14 214 15 222 3.60e-45 150
Msa1079740 AT1G73640.1 50.000 168 82 2 14 181 11 176 7.55e-45 149
Msa1079740 AT5G59150.1 46.512 172 90 2 13 184 9 178 8.62e-45 149
Msa1079740 AT1G28550.1 42.857 210 110 4 13 214 10 217 2.13e-44 148
Msa1079740 AT2G33870.1 42.381 210 111 5 13 214 10 217 2.32e-44 147
Msa1079740 AT3G12160.1 40.670 209 113 4 14 213 13 219 2.80e-44 147
Msa1079740 AT3G46830.1 46.512 172 90 2 13 184 9 178 3.09e-44 147
Msa1079740 AT3G46830.2 46.512 172 90 2 13 184 9 178 3.09e-44 147
Msa1079740 AT2G31680.1 41.935 217 115 4 7 214 3 217 3.20e-44 147
Msa1079740 AT5G65270.1 43.094 181 100 3 1 180 1 179 6.20e-44 147
Msa1079740 AT1G09630.1 48.466 163 82 2 13 175 9 169 1.01e-43 146
Msa1079740 AT3G15060.1 42.254 213 106 4 13 214 10 216 1.05e-43 146
Msa1079740 AT4G18800.1 40.654 214 121 3 5 214 2 213 1.35e-42 143
Msa1079740 AT1G06400.1 42.308 208 112 3 13 214 10 215 1.38e-42 143
Msa1079740 AT4G18430.1 39.906 213 111 4 13 214 10 216 2.05e-42 142
Msa1079740 AT5G03520.2 46.286 175 85 5 45 214 34 204 2.17e-42 142
Msa1079740 AT5G47960.1 39.048 210 116 5 14 213 13 220 3.91e-41 139
Msa1079740 AT4G35860.2 54.032 124 55 2 58 181 2 123 1.88e-39 133
Msa1079740 AT1G01200.1 40.541 185 103 4 14 193 26 208 1.15e-38 134
Msa1079740 AT3G54840.1 38.172 186 111 4 1 184 18 201 2.41e-38 132
Msa1079740 AT3G54840.2 38.506 174 104 3 1 173 18 189 1.34e-36 127
Msa1079740 AT3G54840.3 39.881 168 97 4 19 184 2 167 1.89e-36 126
Msa1079740 AT5G45130.1 39.583 192 106 5 10 193 3 192 2.45e-36 126
Msa1079740 AT4G19640.1 41.358 162 93 2 18 179 12 171 8.54e-36 125
Msa1079740 AT4G39890.1 39.375 160 96 1 17 176 10 168 1.89e-35 125
Msa1079740 AT5G45130.2 39.779 181 100 4 20 193 22 200 4.00e-34 121
Msa1079740 AT2G22290.1 34.804 204 120 5 17 214 10 206 1.81e-33 119
Msa1079740 AT5G10260.1 34.171 199 127 3 17 213 10 206 5.07e-33 118
Msa1079740 AT2G44610.1 37.500 160 98 2 17 176 10 167 6.38e-33 118
Msa1079740 AT5G64990.1 38.462 156 94 2 17 172 8 161 2.75e-31 114
Msa1079740 AT5G59150.2 45.669 127 67 2 58 184 3 127 2.75e-30 110
Msa1079740 AT2G44690.1 35.393 178 101 5 18 184 20 194 5.52e-29 108
Msa1079740 AT3G18820.1 33.854 192 112 5 18 195 10 200 1.17e-28 107
Msa1079740 AT5G64990.2 36.810 163 94 3 17 172 8 168 1.52e-28 107
Msa1079740 AT1G22740.1 37.278 169 96 5 18 177 10 177 3.77e-28 105
Msa1079740 AT4G09720.1 38.788 165 94 5 18 176 10 173 5.41e-28 105
Msa1079740 AT1G52280.1 37.647 170 99 5 10 173 2 170 2.65e-27 103
Msa1079740 AT4G09720.4 37.647 170 94 5 18 176 10 178 4.71e-27 103
Msa1079740 AT1G49300.2 32.812 192 114 5 18 195 10 200 6.13e-27 102
Msa1079740 AT1G49300.1 32.812 192 114 5 18 195 10 200 6.13e-27 102
Msa1079740 AT4G19640.2 41.667 132 75 2 18 149 12 141 6.58e-27 100
Msa1079740 AT4G09720.3 36.932 176 93 5 18 176 10 184 1.04e-26 102
Msa1079740 AT4G35020.1 31.638 177 107 4 18 183 8 181 2.90e-26 100
Msa1079740 AT4G35020.2 31.638 177 107 4 18 183 8 181 2.90e-26 100
Msa1079740 AT4G35020.3 31.638 177 107 4 18 183 8 181 2.90e-26 100
Msa1079740 AT2G21880.1 36.145 166 99 4 17 176 10 174 3.67e-26 100
Msa1079740 AT4G19640.3 42.520 127 71 2 18 144 12 136 7.60e-26 99.4
Msa1079740 AT3G51300.1 32.759 174 102 5 18 180 8 177 1.01e-25 99.4
Msa1079740 AT3G48040.1 31.844 179 107 5 18 185 10 184 2.59e-25 98.6
Msa1079740 AT4G28950.1 31.492 181 111 5 17 188 7 183 3.68e-25 98.2
Msa1079740 AT3G16100.1 36.364 165 98 5 18 176 10 173 5.53e-25 97.4
Msa1079740 AT2G17800.2 32.759 174 102 5 18 180 8 177 7.00e-25 97.1
Msa1079740 AT2G17800.1 32.759 174 102 5 18 180 8 177 7.00e-25 97.1
Msa1079740 AT1G20090.1 31.034 174 105 5 18 180 7 176 1.30e-24 96.3
Msa1079740 AT1G75840.1 31.034 174 105 5 18 180 8 177 2.15e-24 95.9
Msa1079740 AT5G39620.1 36.471 170 101 4 17 180 6 174 2.48e-24 95.9
Msa1079740 AT5G45970.1 33.533 167 97 5 18 173 8 171 4.33e-24 95.1
Msa1079740 AT4G35950.1 32.184 174 103 5 18 180 8 177 4.72e-24 94.7
Msa1079740 AT5G55080.1 36.145 166 97 6 16 179 13 171 3.28e-23 93.2
Msa1079740 AT5G20020.1 32.584 178 107 4 16 185 13 185 3.88e-22 90.5
Msa1079740 AT5G55190.1 32.584 178 107 4 16 185 13 185 4.04e-22 90.5
Msa1079740 AT5G62880.1 31.737 167 100 5 18 173 10 173 5.55e-22 90.1
Msa1079740 AT5G20010.1 32.584 178 107 4 16 185 13 185 7.27e-22 89.7
Msa1079740 AT4G09720.6 40.741 135 73 5 48 176 6 139 2.03e-21 87.4
Msa1079740 AT4G09720.5 40.741 135 73 5 48 176 6 139 2.03e-21 87.4
Msa1079740 AT4G09720.2 40.741 135 73 5 48 176 6 139 2.03e-21 87.4
Msa1079740 AT3G48040.2 31.875 160 95 4 18 166 10 166 2.06e-21 87.4
Msa1079740 AT5G62880.2 31.288 163 98 5 18 169 10 169 1.09e-19 83.2
Msa1079740 AT2G21880.4 37.778 135 77 4 48 176 16 149 4.91e-19 81.6
Msa1079740 AT2G21880.3 37.778 135 77 4 48 176 16 149 4.91e-19 81.6
Msa1079740 AT4G35020.4 34.483 116 73 2 18 133 8 120 1.45e-17 76.6
Msa1079740 AT4G35020.5 34.483 116 73 2 18 133 8 120 1.45e-17 76.6
Msa1079740 AT3G51290.2 33.803 142 80 5 43 173 634 772 5.16e-17 79.3
Msa1079740 AT2G21880.2 31.515 165 98 5 18 176 11 166 8.32e-17 75.9
Msa1079740 AT5G46025.1 39.216 102 61 1 78 179 6 106 2.85e-16 72.4
Msa1079740 AT3G21700.3 29.319 191 125 4 6 189 95 282 2.71e-14 70.5
Msa1079740 AT5G09910.1 32.743 113 62 2 18 117 24 135 1.04e-12 66.2
Msa1079740 AT5G09910.4 32.743 113 62 2 18 117 24 135 1.04e-12 66.2
Msa1079740 AT5G37680.1 29.375 160 101 6 21 175 24 176 1.41e-12 64.3
Msa1079740 AT5G64813.1 28.369 141 76 3 18 134 24 163 1.26e-11 63.2
Msa1079740 AT5G64813.3 28.369 141 76 3 18 134 24 163 1.26e-11 63.2
Msa1079740 AT5G64813.2 28.369 141 76 3 18 134 24 163 1.26e-11 63.2
Msa1079740 AT3G49860.1 29.605 152 91 6 21 164 16 159 6.74e-11 59.3

Find 75 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTATTTGCTCTCTTAA+AGG 0.138515 7_2:+78955241 None:intergenic
AAAGATTAAAGCTTACAATT+TGG 0.225188 7_2:-78954447 Msa1079740:CDS
TGGCAACAATGACGCTTATT+AGG 0.226054 7_2:-78951414 Msa1079740:three_prime_UTR
GTCTTTGTTTAAAGATTAAC+AGG 0.246122 7_2:-78951268 Msa1079740:three_prime_UTR
ATCTTGTTGATTGGTGATTC+TGG 0.251391 7_2:-78954997 Msa1079740:CDS
AACTACTTGAATGACGAAAT+TGG 0.276570 7_2:-78951434 Msa1079740:three_prime_UTR
GTGTTGTGGCTATCTTAAAA+AGG 0.278245 7_2:+78955116 None:intergenic
AAGATTAAAGCTTACAATTT+GGG 0.307266 7_2:-78954446 Msa1079740:CDS
AAAAGGATTAAGACTGCTTA+GGG 0.330855 7_2:+78955453 None:intergenic
GAACAACAGTCATCACAAAA+TGG 0.361600 7_2:-78951564 Msa1079740:CDS
GCGAGAGAGTAGTAACTAAA+AGG 0.364075 7_2:+78955166 None:intergenic
GTCACACTGTTTATGTAAGT+TGG 0.376274 7_2:+78955188 None:intergenic
CTTAGCTCTTGCTAAAGAAC+TGG 0.377729 7_2:-78952466 Msa1079740:CDS
TTCATTTGAAAACTTAAATA+CGG 0.380958 7_2:-78951216 Msa1079740:three_prime_UTR
TCTTTCAAGATCTTGTTGAT+TGG 0.384126 7_2:-78955006 Msa1079740:CDS
AAGGATCAGCAGCAACAAAA+AGG 0.384127 7_2:-78951608 Msa1079740:CDS
CTAGCAGCAGTAACAAACTA+TGG 0.388810 7_2:+78951473 None:intergenic
TTTGCTCTCTTAAAGGACTA+AGG 0.390719 7_2:+78955248 None:intergenic
GGAACTCTATTCAACTAATC+AGG 0.391791 7_2:-78953913 Msa1079740:CDS
AGAAGTGTGGTCTAAGGAAT+TGG 0.405138 7_2:-78953934 Msa1079740:CDS
AATGGAAGCTCCTAGTCTAT+TGG 0.413250 7_2:-78951634 Msa1079740:CDS
TTGATTGGTGATTCTGGTGT+TGG 0.414485 7_2:-78954991 Msa1079740:CDS
TTACTGCTGCTAGTGTCCTT+TGG 0.415118 7_2:-78951463 Msa1079740:three_prime_UTR
AAGATCTTCAACAGATGAAC+TGG 0.417295 7_2:+78954939 None:intergenic
AGTATTCAGAAGTACTACTA+TGG 0.417299 7_2:+78955346 None:intergenic
TGAATCTATTGCAGCTGGAC+AGG 0.437434 7_2:-78954287 Msa1079740:intron
ACAAAAGATACATCATTCAT+AGG 0.441607 7_2:+78951374 None:intergenic
CAGCTGGACAGGAAAGGTTC+AGG 0.443385 7_2:-78954276 Msa1079740:CDS
GAAAATGCAATGCCACCAAT+GGG 0.455490 7_2:+78955210 None:intergenic
TGGAAGAAACTCACATATAC+AGG 0.464526 7_2:+78951493 None:intergenic
ACTCTCTCGCTCTCTCTCTC+TGG 0.465071 7_2:-78955153 Msa1079740:five_prime_UTR
CTAACAAGTTCTTACTATAG+AGG 0.484550 7_2:-78954250 Msa1079740:CDS
TATCTGTGTGTTATGTGTTG+TGG 0.486273 7_2:+78955102 None:intergenic
TTGCTCTCTTAAAGGACTAA+GGG 0.487625 7_2:+78955249 None:intergenic
AGATCTTGAAAGAGAGATCA+TGG 0.489933 7_2:+78955016 None:intergenic
CACTTCTGACAAGTTTGTAA+AGG 0.493613 7_2:+78953950 None:intergenic
CTTGTCAGAAGTGTGGTCTA+AGG 0.494158 7_2:-78953940 Msa1079740:CDS
CTTTGAAGAACTCGCTCTAA+AGG 0.500370 7_2:-78952391 Msa1079740:intron
TATTACTCAGGATTCTGAAA+GGG 0.503960 7_2:-78952508 Msa1079740:intron
GAAGATCTTTCACCTACCAT+TGG 0.506624 7_2:-78954925 Msa1079740:intron
GATCAAAACGCTCACGGTAG+GGG 0.511135 7_2:-78954473 Msa1079740:CDS
GGAGCACAAGGAATCATTCT+CGG 0.521124 7_2:-78954229 Msa1079740:intron
GGAAAATGCAATGCCACCAA+TGG 0.522838 7_2:+78955209 None:intergenic
ATCAAAACGCTCACGGTAGG+GGG 0.523932 7_2:-78954472 Msa1079740:CDS
AGATCAAAACGCTCACGGTA+GGG 0.533027 7_2:-78954474 Msa1079740:CDS
TGCTAAAACTCGAGAAAATG+TGG 0.538765 7_2:-78952421 Msa1079740:CDS
AAGATCAAAACGCTCACGGT+AGG 0.541095 7_2:-78954475 Msa1079740:CDS
TATGATTATCAGATTGACTT+GGG 0.550089 7_2:+78951343 None:intergenic
AGGGCTGTGAGCAGAGAAGA+GGG 0.551482 7_2:-78952489 Msa1079740:CDS
GAGTGCGTGAAGATGCTAGT+TGG 0.552532 7_2:-78953891 Msa1079740:CDS
GCTCCTAGTCTATTGGAAGA+AGG 0.555852 7_2:-78951627 Msa1079740:CDS
TTAGCTCTTGCTAAAGAACT+GGG 0.562078 7_2:-78952465 Msa1079740:CDS
ATGAGTTCATCATCAGGCTC+AGG 0.562325 7_2:-78955051 Msa1079740:CDS
AAGGGCTGTGAGCAGAGAAG+AGG 0.564683 7_2:-78952490 Msa1079740:CDS
GTATGATTATCAGATTGACT+TGG 0.565907 7_2:+78951342 None:intergenic
AAGCTTACAATTTGGGACAC+AGG 0.567890 7_2:-78954439 Msa1079740:intron
TTATTACTCAGGATTCTGAA+AGG 0.568493 7_2:-78952509 Msa1079740:intron
TGCTCTCTTAAAGGACTAAG+GGG 0.575660 7_2:+78955250 None:intergenic
ATGAAGTGATACCCCATTGG+TGG 0.579825 7_2:-78955222 Msa1079740:five_prime_UTR
TAAATGAAGTGATACCCCAT+TGG 0.602115 7_2:-78955225 Msa1079740:five_prime_UTR
TACTATGGTATGAATCAAAG+AGG 0.609036 7_2:+78955361 None:intergenic
GATCCTTCTTCCAATAGACT+AGG 0.615354 7_2:+78951624 None:intergenic
TTCTAGTTTATGATGTCACA+AGG 0.619598 7_2:-78953980 Msa1079740:intron
GAGTTGTAAATACCAATGGT+AGG 0.627519 7_2:+78954913 None:intergenic
TTACAAACTTGTCAGAAGTG+TGG 0.645757 7_2:-78953947 Msa1079740:CDS
TCAGGCTCAGGTCAGAGCAG+TGG 0.654264 7_2:-78955039 Msa1079740:CDS
TCAAAACGCTCACGGTAGGG+GGG 0.657837 7_2:-78954471 Msa1079740:CDS
TCAAGTAGTTGAGCAACCAA+AGG 0.661922 7_2:+78951447 None:intergenic
TCTTACTATAGAGGAGCACA+AGG 0.667709 7_2:-78954241 Msa1079740:CDS
CTATTGCAGCTGGACAGGAA+AGG 0.669851 7_2:-78954282 Msa1079740:intron
CAACAGTCATCACAAAATGG+AGG 0.675652 7_2:-78951561 Msa1079740:CDS
AAAGGATTAAGACTGCTTAG+GGG 0.685444 7_2:+78955454 None:intergenic
TAGCTCTTGCTAAAGAACTG+GGG 0.718721 7_2:-78952464 Msa1079740:CDS
TCTTTGTTTAAAGATTAACA+GGG 0.726807 7_2:-78951267 Msa1079740:three_prime_UTR
AAAATGCAATGCCACCAATG+GGG 0.734060 7_2:+78955211 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAATTAA+CGG + chr7_2:78953446-78953465 None:intergenic 0.0%
!! ATATATAGATTAGATAAAAA+AGG + chr7_2:78951231-78951250 None:intergenic 10.0%
!! AAATTGAATACTTATATAAA+AGG + chr7_2:78951959-78951978 None:intergenic 10.0%
!! TCTCATTTCTATTAAATTAA+TGG - chr7_2:78951774-78951793 Msa1079740:intron 15.0%
!!! AGCATTTTAAAAAAACAAAA+TGG + chr7_2:78952084-78952103 None:intergenic 15.0%
!!! ATTAACCAATTTAATTTAAG+TGG - chr7_2:78952331-78952350 Msa1079740:intron 15.0%
!! ATCTTATCTATATTTATCTT+GGG - chr7_2:78952526-78952545 Msa1079740:intron 15.0%
!!! TGTCTTGAAATATATTTTAT+TGG - chr7_2:78953019-78953038 Msa1079740:intron 15.0%
!!! TGAAATATATTTTATTGGAT+TGG - chr7_2:78953024-78953043 Msa1079740:intron 15.0%
!! TATTGAAAAACTATATACTA+AGG + chr7_2:78954473-78954492 None:intergenic 15.0%
!!! TTTTTGTATAATATATTGAC+CGG - chr7_2:78954648-78954667 Msa1079740:intron 15.0%
!!! TATTATATTTCTATAGTTCA+GGG + chr7_2:78954896-78954915 None:intergenic 15.0%
!!! TTATTATATTTCTATAGTTC+AGG + chr7_2:78954897-78954916 None:intergenic 15.0%
!! AATGAATGAAAAATTTAAGT+GGG + chr7_2:78955434-78955453 None:intergenic 15.0%
!! AAATGAATGAAAAATTTAAG+TGG + chr7_2:78955435-78955454 None:intergenic 15.0%
!! TTCATTTGAAAACTTAAATA+CGG - chr7_2:78955448-78955467 Msa1079740:five_prime_UTR 15.0%
!!! TTTTTTGTTAGAAGCAAAAA+AGG - chr7_2:78951340-78951359 Msa1079740:three_prime_UTR 20.0%
!! TTAAAAAAACAAAATGGAGA+AGG + chr7_2:78952078-78952097 None:intergenic 20.0%
!! AAAGATTAAAGCTTACAATT+TGG - chr7_2:78952217-78952236 Msa1079740:intron 20.0%
!! AAGATTAAAGCTTACAATTT+GGG - chr7_2:78952218-78952237 Msa1079740:intron 20.0%
!! ACTTACCACTTAAATTAAAT+TGG + chr7_2:78952339-78952358 None:intergenic 20.0%
!! GATCTTATCTATATTTATCT+TGG - chr7_2:78952525-78952544 Msa1079740:intron 20.0%
!! GTTCAACTATTACTAAATAA+TGG + chr7_2:78952576-78952595 None:intergenic 20.0%
!! TTATTTAGTAATAGTTGAAC+TGG - chr7_2:78952576-78952595 Msa1079740:intron 20.0%
!! ATACAAAAATTCATTCTCTA+TGG + chr7_2:78952983-78953002 None:intergenic 20.0%
!!! TAGAGAATGAATTTTTGTAT+TGG - chr7_2:78952983-78953002 Msa1079740:intron 20.0%
!!! AATGAATTTTTGTATTGGAT+TGG - chr7_2:78952988-78953007 Msa1079740:intron 20.0%
!!! ATATATTTTATTGGATTGGT+TGG - chr7_2:78953028-78953047 Msa1079740:intron 20.0%
!! TTGTCATTAATTCTAATGAA+TGG + chr7_2:78953128-78953147 None:intergenic 20.0%
!!! TTCCACTTATAAAAACTTTT+AGG + chr7_2:78953335-78953354 None:intergenic 20.0%
!! AAAAAAAAAAAATTAACGGG+TGG + chr7_2:78953442-78953461 None:intergenic 20.0%
!!! TTAGTTGTTATTTTGTTAGT+AGG - chr7_2:78953479-78953498 Msa1079740:intron 20.0%
!!! TAGTTGTTATTTTGTTAGTA+GGG - chr7_2:78953480-78953499 Msa1079740:intron 20.0%
!! AGAAATGTTATTGTAAGTAA+GGG + chr7_2:78953711-78953730 None:intergenic 20.0%
!! AAGAAATGTTATTGTAAGTA+AGG + chr7_2:78953712-78953731 None:intergenic 20.0%
!! ATAAGATATACATTTGTATG+TGG - chr7_2:78953818-78953837 Msa1079740:intron 20.0%
!!! GATAGATGATTTTTTGTATT+AGG - chr7_2:78953999-78954018 Msa1079740:intron 20.0%
!! AATATAAATGAAGAATTCAG+AGG - chr7_2:78954509-78954528 Msa1079740:intron 20.0%
!! TATTTAAGCTTATGCTAATT+TGG + chr7_2:78954569-78954588 None:intergenic 20.0%
!! ATTAGCATAAGCTTAAATAT+TGG - chr7_2:78954570-78954589 Msa1079740:intron 20.0%
!! AATAAGTAGTTGATTAAACA+AGG - chr7_2:78954912-78954931 Msa1079740:intron 20.0%
!!! TCTTTGTTTAAAGATTAACA+GGG - chr7_2:78955397-78955416 Msa1079740:five_prime_UTR 20.0%
!! ATGAATGAAAAATTTAAGTG+GGG + chr7_2:78955433-78955452 None:intergenic 20.0%
! TCATTTATTTGCTCTCTTAA+AGG + chr7_2:78951426-78951445 None:intergenic 25.0%
! TCTTAAAAAGGAATAGTGAA+AGG + chr7_2:78951539-78951558 None:intergenic 25.0%
! TCATGATTGAATCTGTTAAT+TGG - chr7_2:78951893-78951912 Msa1079740:intron 25.0%
! AGATAAAAGCAACATAATTG+AGG + chr7_2:78952113-78952132 None:intergenic 25.0%
!!! ATGTTGTTTTTATGATCTGT+AGG - chr7_2:78952156-78952175 Msa1079740:intron 25.0%
! CTATTATAAGAAAAGTCTTC+TGG + chr7_2:78952916-78952935 None:intergenic 25.0%
!!! AATTTTTGTATTGGATTGGT+AGG - chr7_2:78952992-78953011 Msa1079740:intron 25.0%
!! GACCTAAAAGTTTTTATAAG+TGG - chr7_2:78953330-78953349 Msa1079740:intron 25.0%
!!! GCTCAATCTTAATTTTAAGA+TGG - chr7_2:78953398-78953417 Msa1079740:intron 25.0%
! AGATGGTATGAAATATTTGT+TGG - chr7_2:78953415-78953434 Msa1079740:intron 25.0%
! GATGGTATGAAATATTTGTT+GGG - chr7_2:78953416-78953435 Msa1079740:intron 25.0%
!!! AGTTGTTATTTTGTTAGTAG+GGG - chr7_2:78953481-78953500 Msa1079740:intron 25.0%
! CTTATTTCATTCATTCTGAA+TGG + chr7_2:78953803-78953822 None:intergenic 25.0%
! AGTATTAAACTTCCATTTAG+AGG - chr7_2:78953883-78953902 Msa1079740:CDS 25.0%
! AAAAAATCATCTATCAGACA+AGG + chr7_2:78953994-78954013 None:intergenic 25.0%
! CTAATAAGAAGCTTACATAT+TGG - chr7_2:78954689-78954708 Msa1079740:intron 25.0%
!!! TTGGTTTTGTTGATAAAAAC+TGG - chr7_2:78954708-78954727 Msa1079740:intron 25.0%
!!! AAGTTGATAGTTTATTCTAG+GGG + chr7_2:78954870-78954889 None:intergenic 25.0%
!!! CAAGTTGATAGTTTATTCTA+GGG + chr7_2:78954871-78954890 None:intergenic 25.0%
! ATCAAATTATGACATACTAG+TGG - chr7_2:78954990-78955009 Msa1079740:CDS 25.0%
! ACAAAAGATACATCATTCAT+AGG + chr7_2:78955293-78955312 None:intergenic 25.0%
!! TATGATTATCAGATTGACTT+GGG + chr7_2:78955324-78955343 None:intergenic 25.0%
!! GTCTTTGTTTAAAGATTAAC+AGG - chr7_2:78955396-78955415 Msa1079740:five_prime_UTR 25.0%
AAAAAGGATTAAGACTGCTT+AGG + chr7_2:78951215-78951234 None:intergenic 30.0%
TACTATGGTATGAATCAAAG+AGG + chr7_2:78951306-78951325 None:intergenic 30.0%
!! AGTATTCAGAAGTACTACTA+TGG + chr7_2:78951321-78951340 None:intergenic 30.0%
AGAAAAATGAGTTCATCATC+AGG - chr7_2:78951607-78951626 Msa1079740:CDS 30.0%
TCTTTCAAGATCTTGTTGAT+TGG - chr7_2:78951658-78951677 Msa1079740:intron 30.0%
CAATTAGAGCAGTTAAACAA+TGG + chr7_2:78951929-78951948 None:intergenic 30.0%
!!! TTTTAAGATCAAAACGCTCA+CGG - chr7_2:78952185-78952204 Msa1079740:intron 30.0%
AAAGGTCTAATTTCGTTAAG+GGG + chr7_2:78952281-78952300 None:intergenic 30.0%
CAAAGGTCTAATTTCGTTAA+GGG + chr7_2:78952282-78952301 None:intergenic 30.0%
ACAAAGGTCTAATTTCGTTA+AGG + chr7_2:78952283-78952302 None:intergenic 30.0%
CTAACAAGTTCTTACTATAG+AGG - chr7_2:78952414-78952433 Msa1079740:CDS 30.0%
ATTTATCTTGGGACTAAAGA+TGG - chr7_2:78952537-78952556 Msa1079740:intron 30.0%
!! TTCTAGTTTATGATGTCACA+AGG - chr7_2:78952684-78952703 Msa1079740:intron 30.0%
TAGATGTGTTAAATTCTTCC+AGG - chr7_2:78952882-78952901 Msa1079740:intron 30.0%
!! TAGATCATCAAGAAAGTACT+AGG - chr7_2:78952941-78952960 Msa1079740:intron 30.0%
! GTTATTTCATTGTCTAAACG+TGG + chr7_2:78953075-78953094 None:intergenic 30.0%
AATGAATGGTGAAATAGACT+TGG + chr7_2:78953114-78953133 None:intergenic 30.0%
AAAGACAAGTTCTTCTAAGT+TGG + chr7_2:78953249-78953268 None:intergenic 30.0%
! CCTACTTGAAATACTCTTTT+AGG + chr7_2:78953682-78953701 None:intergenic 30.0%
!! CCTAAAAGAGTATTTCAAGT+AGG - chr7_2:78953679-78953698 Msa1079740:intron 30.0%
!! AAAAGAGTATTTCAAGTAGG+AGG - chr7_2:78953682-78953701 Msa1079740:intron 30.0%
CATATGATTTACAGTTCTAC+TGG - chr7_2:78953946-78953965 Msa1079740:CDS 30.0%
AATGACATCTATGCTAAATG+AGG + chr7_2:78954026-78954045 None:intergenic 30.0%
! ATGTGAGATTTTCACATGAT+TGG - chr7_2:78954099-78954118 Msa1079740:intron 30.0%
TTATTACTCAGGATTCTGAA+AGG - chr7_2:78954155-78954174 Msa1079740:intron 30.0%
! TATTACTCAGGATTCTGAAA+GGG - chr7_2:78954156-78954175 Msa1079740:intron 30.0%
TGTTCCAATTAACTGACATT+AGG - chr7_2:78954343-78954362 Msa1079740:intron 30.0%
AATGCCTAATGTCAGTTAAT+TGG + chr7_2:78954350-78954369 None:intergenic 30.0%
TTACACTTCACTAAGTTTGT+TGG - chr7_2:78954368-78954387 Msa1079740:intron 30.0%
CAATTCTGTTATATGTTCCT+TGG - chr7_2:78954419-78954438 Msa1079740:intron 30.0%
TAATTTGGTAAGAACTCACA+GGG + chr7_2:78954554-78954573 None:intergenic 30.0%
AGTGCTTATCTACAATTCTA+CGG - chr7_2:78954739-78954758 Msa1079740:intron 30.0%
! TTAGTATTTTTCTCCTTACC+AGG - chr7_2:78954773-78954792 Msa1079740:intron 30.0%
!! AGTTGATAGTTTATTCTAGG+GGG + chr7_2:78954869-78954888 None:intergenic 30.0%
!! CCAAGTTGATAGTTTATTCT+AGG + chr7_2:78954872-78954891 None:intergenic 30.0%
CCTAGAATAAACTATCAACT+TGG - chr7_2:78954869-78954888 Msa1079740:intron 30.0%
!! GATTTTGAGTGAAACTTGTA+TGG - chr7_2:78954939-78954958 Msa1079740:CDS 30.0%
! GAACACCATTTTGTAGATAA+TGG - chr7_2:78955012-78955031 Msa1079740:CDS 30.0%
AGCTTCCATTATCTACAAAA+TGG + chr7_2:78955020-78955039 None:intergenic 30.0%
AACTACTTGAATGACGAAAT+TGG - chr7_2:78955230-78955249 Msa1079740:five_prime_UTR 30.0%
GTATGATTATCAGATTGACT+TGG + chr7_2:78955325-78955344 None:intergenic 30.0%
TTGCTCTCTTAAAGGACTAA+GGG + chr7_2:78951418-78951437 None:intergenic 35.0%
TTTGCTCTCTTAAAGGACTA+AGG + chr7_2:78951419-78951438 None:intergenic 35.0%
TAAATGAAGTGATACCCCAT+TGG - chr7_2:78951439-78951458 Msa1079740:three_prime_UTR 35.0%
GTCACACTGTTTATGTAAGT+TGG + chr7_2:78951479-78951498 None:intergenic 35.0%
GTGTTGTGGCTATCTTAAAA+AGG + chr7_2:78951551-78951570 None:intergenic 35.0%
TATCTGTGTGTTATGTGTTG+TGG + chr7_2:78951565-78951584 None:intergenic 35.0%
AGATCTTGAAAGAGAGATCA+TGG + chr7_2:78951651-78951670 None:intergenic 35.0%
! ATCTTGTTGATTGGTGATTC+TGG - chr7_2:78951667-78951686 Msa1079740:intron 35.0%
AAGATCTTCAACAGATGAAC+TGG + chr7_2:78951728-78951747 None:intergenic 35.0%
GAGTTGTAAATACCAATGGT+AGG + chr7_2:78951754-78951773 None:intergenic 35.0%
GAGAGAGTTGTAAATACCAA+TGG + chr7_2:78951758-78951777 None:intergenic 35.0%
TAGCTAGATCAAGAATCAAG+AGG + chr7_2:78951806-78951825 None:intergenic 35.0%
ATGCTGCTAAGATTGAACAA+AGG + chr7_2:78952299-78952318 None:intergenic 35.0%
AGATCAACACCACAATTTCT+CGG + chr7_2:78952510-78952529 None:intergenic 35.0%
CACTTCTGACAAGTTTGTAA+AGG + chr7_2:78952717-78952736 None:intergenic 35.0%
TTACAAACTTGTCAGAAGTG+TGG - chr7_2:78952717-78952736 Msa1079740:intron 35.0%
GGAACTCTATTCAACTAATC+AGG - chr7_2:78952751-78952770 Msa1079740:intron 35.0%
!! ATTGGATTGGTTGGAAATTG+TGG - chr7_2:78953037-78953056 Msa1079740:intron 35.0%
AGAAGAACTTGTCTTTCGTA+CGG - chr7_2:78953253-78953272 Msa1079740:intron 35.0%
!!! TGTTATTTTGTTAGTAGGGG+TGG - chr7_2:78953484-78953503 Msa1079740:intron 35.0%
ACATAGGAGTTGGAATGATA+AGG + chr7_2:78953525-78953544 None:intergenic 35.0%
!!! ATAAGGTGGCTTCTAGTTTT+GGG + chr7_2:78953553-78953572 None:intergenic 35.0%
TCATCAGAATATCATGGTGA+TGG + chr7_2:78953750-78953769 None:intergenic 35.0%
TGGATGTCATCAGAATATCA+TGG + chr7_2:78953756-78953775 None:intergenic 35.0%
! CAAATGATAGTGCCTCTAAA+TGG + chr7_2:78953898-78953917 None:intergenic 35.0%
TATCAGACAAGGTTCTTCAA+TGG + chr7_2:78953983-78954002 None:intergenic 35.0%
TATGCTATTGCTATGTGCAT+TGG + chr7_2:78954051-78954070 None:intergenic 35.0%
! TGAGATTTTCACATGATTGG+TGG - chr7_2:78954102-78954121 Msa1079740:intron 35.0%
! TTAGCTCTTGCTAAAGAACT+GGG - chr7_2:78954199-78954218 Msa1079740:intron 35.0%
TGCTAAAACTCGAGAAAATG+TGG - chr7_2:78954243-78954262 Msa1079740:CDS 35.0%
CAAGACAGAAACATCATCAA+AGG + chr7_2:78954316-78954335 None:intergenic 35.0%
ATACAGAGAGAAATGATCCA+AGG + chr7_2:78954439-78954458 None:intergenic 35.0%
CTAATTTGGTAAGAACTCAC+AGG + chr7_2:78954555-78954574 None:intergenic 35.0%
ACTTCTGTATGCAGATTTCT+CGG + chr7_2:78954618-78954637 None:intergenic 35.0%
!! GTTGATAGTTTATTCTAGGG+GGG + chr7_2:78954868-78954887 None:intergenic 35.0%
GAACAACAGTCATCACAAAA+TGG - chr7_2:78955100-78955119 Msa1079740:five_prime_UTR 35.0%
TGGAAGAAACTCACATATAC+AGG + chr7_2:78955174-78955193 None:intergenic 35.0%
GAAAAATTTAAGTGGGGCAT+GGG + chr7_2:78955427-78955446 None:intergenic 35.0%
TGAAAAATTTAAGTGGGGCA+TGG + chr7_2:78955428-78955447 None:intergenic 35.0%
! GCAAAAAAGGTGTAGACAGT+TGG - chr7_2:78951353-78951372 Msa1079740:three_prime_UTR 40.0%
AGAGAGAGAGAGAAGCTAAA+AGG + chr7_2:78951382-78951401 None:intergenic 40.0%
TGCTCTCTTAAAGGACTAAG+GGG + chr7_2:78951417-78951436 None:intergenic 40.0%
AAAATGCAATGCCACCAATG+GGG + chr7_2:78951456-78951475 None:intergenic 40.0%
GAAAATGCAATGCCACCAAT+GGG + chr7_2:78951457-78951476 None:intergenic 40.0%
GCGAGAGAGTAGTAACTAAA+AGG + chr7_2:78951501-78951520 None:intergenic 40.0%
! TTGATTGGTGATTCTGGTGT+TGG - chr7_2:78951673-78951692 Msa1079740:intron 40.0%
GAAGATCTTTCACCTACCAT+TGG - chr7_2:78951739-78951758 Msa1079740:intron 40.0%
CAAGATCAATCTTACCACTG+AGG + chr7_2:78952008-78952027 None:intergenic 40.0%
! AAGCTTACAATTTGGGACAC+AGG - chr7_2:78952225-78952244 Msa1079740:intron 40.0%
! AGCATTGAATCTATTGCAGC+TGG - chr7_2:78952372-78952391 Msa1079740:intron 40.0%
! TCTTACTATAGAGGAGCACA+AGG - chr7_2:78952423-78952442 Msa1079740:CDS 40.0%
TCATTCTCGGTATGCTAATG+TGG - chr7_2:78952448-78952467 Msa1079740:CDS 40.0%
TTGTTCTTCCCGAGAAATTG+TGG - chr7_2:78952498-78952517 Msa1079740:CDS 40.0%
GATCAACACCACAATTTCTC+GGG + chr7_2:78952509-78952528 None:intergenic 40.0%
! AGAAGTGTGGTCTAAGGAAT+TGG - chr7_2:78952730-78952749 Msa1079740:intron 40.0%
CATAAGATTGCACGAATGTG+TGG - chr7_2:78952845-78952864 Msa1079740:intron 40.0%
ACGAATGTGTGGAAAATGAC+AGG - chr7_2:78952856-78952875 Msa1079740:intron 40.0%
! AGTCTTCTGGTAATGAAACC+TGG + chr7_2:78952903-78952922 None:intergenic 40.0%
GGCTAAAGCATACTTACGAT+AGG + chr7_2:78953221-78953240 None:intergenic 40.0%
!! AGTTCTTCTAAGTTGGTCCA+CGG + chr7_2:78953242-78953261 None:intergenic 40.0%
!!! ACGTTACAAGCTGGTTTTGT+AGG - chr7_2:78953365-78953384 Msa1079740:intron 40.0%
!!! CGTTACAAGCTGGTTTTGTA+GGG - chr7_2:78953366-78953385 Msa1079740:intron 40.0%
TAGGAGTTGGAATGATAAGG+AGG + chr7_2:78953522-78953541 None:intergenic 40.0%
!!! TAAGGTGGCTTCTAGTTTTG+GGG + chr7_2:78953552-78953571 None:intergenic 40.0%
!!! GATAAGGTGGCTTCTAGTTT+TGG + chr7_2:78953554-78953573 None:intergenic 40.0%
!! CTCAATAACGGATAGTCCAA+GGG + chr7_2:78953580-78953599 None:intergenic 40.0%
CTATCCGTTATTGAGCTACT+CGG - chr7_2:78953585-78953604 Msa1079740:intron 40.0%
TATCCGTTATTGAGCTACTC+GGG - chr7_2:78953586-78953605 Msa1079740:intron 40.0%
CACGCTCAAAACTAGACATT+TGG + chr7_2:78953619-78953638 None:intergenic 40.0%
!!! ATGTCTAGTTTTGAGCGTGA+AGG - chr7_2:78953620-78953639 Msa1079740:intron 40.0%
!!! TGTCTAGTTTTGAGCGTGAA+GGG - chr7_2:78953621-78953640 Msa1079740:intron 40.0%
GTCCCATGTGAGATGTTATA+TGG - chr7_2:78953656-78953675 Msa1079740:intron 40.0%
GGCCATATAACATCTCACAT+GGG + chr7_2:78953661-78953680 None:intergenic 40.0%
AGGCCATATAACATCTCACA+TGG + chr7_2:78953662-78953681 None:intergenic 40.0%
!! TCAGAATATCATGGTGATGG+TGG + chr7_2:78953747-78953766 None:intergenic 40.0%
TATGCTCAAGTGTCTCAAGT+TGG + chr7_2:78953930-78953949 None:intergenic 40.0%
TCTATCCACTAACATCTGCT+AGG - chr7_2:78954130-78954149 Msa1079740:intron 40.0%
CTATCCACTAACATCTGCTA+GGG - chr7_2:78954131-78954150 Msa1079740:intron 40.0%
TAAACCCTAGCAGATGTTAG+TGG + chr7_2:78954138-78954157 None:intergenic 40.0%
TCTGCTAGGGTTTATTACTC+AGG - chr7_2:78954144-78954163 Msa1079740:intron 40.0%
! CTTAGCTCTTGCTAAAGAAC+TGG - chr7_2:78954198-78954217 Msa1079740:intron 40.0%
TAGCTCTTGCTAAAGAACTG+GGG - chr7_2:78954200-78954219 Msa1079740:intron 40.0%
! CTTTGAAGAACTCGCTCTAA+AGG - chr7_2:78954273-78954292 Msa1079740:CDS 40.0%
GCTGAGAAGTTAAAGATCCA+GGG + chr7_2:78954806-78954825 None:intergenic 40.0%
AGCTGAGAAGTTAAAGATCC+AGG + chr7_2:78954807-78954826 None:intergenic 40.0%
! TAGTTTATTCTAGGGGGGTT+GGG + chr7_2:78954863-78954882 None:intergenic 40.0%
! ATAGTTTATTCTAGGGGGGT+TGG + chr7_2:78954864-78954883 None:intergenic 40.0%
AATGGAAGCTCCTAGTCTAT+TGG - chr7_2:78955030-78955049 Msa1079740:CDS 40.0%
GATCCTTCTTCCAATAGACT+AGG + chr7_2:78955043-78955062 None:intergenic 40.0%
AAGGATCAGCAGCAACAAAA+AGG - chr7_2:78955056-78955075 Msa1079740:exon 40.0%
CAACAGTCATCACAAAATGG+AGG - chr7_2:78955103-78955122 Msa1079740:five_prime_UTR 40.0%
CTAGCAGCAGTAACAAACTA+TGG + chr7_2:78955194-78955213 None:intergenic 40.0%
TCAAGTAGTTGAGCAACCAA+AGG + chr7_2:78955220-78955239 None:intergenic 40.0%
TGGCAACAATGACGCTTATT+AGG - chr7_2:78955250-78955269 Msa1079740:five_prime_UTR 40.0%
ATGAAGTGATACCCCATTGG+TGG - chr7_2:78951442-78951461 Msa1079740:three_prime_UTR 45.0%
GGAAAATGCAATGCCACCAA+TGG + chr7_2:78951458-78951477 None:intergenic 45.0%
ATGAGTTCATCATCAGGCTC+AGG - chr7_2:78951613-78951632 Msa1079740:CDS 45.0%
CTTGTTAGCTGTTACCTCAG+TGG - chr7_2:78951991-78952010 Msa1079740:intron 45.0%
AAGATCAAAACGCTCACGGT+AGG - chr7_2:78952189-78952208 Msa1079740:intron 45.0%
AGATCAAAACGCTCACGGTA+GGG - chr7_2:78952190-78952209 Msa1079740:intron 45.0%
TGAATCTATTGCAGCTGGAC+AGG - chr7_2:78952377-78952396 Msa1079740:intron 45.0%
GGAGCACAAGGAATCATTCT+CGG - chr7_2:78952435-78952454 Msa1079740:CDS 45.0%
! CTTGTCAGAAGTGTGGTCTA+AGG - chr7_2:78952724-78952743 Msa1079740:intron 45.0%
TCGTAAGTATGCTTTAGCCG+TGG - chr7_2:78953222-78953241 Msa1079740:intron 45.0%
ACATCTCTCACGTTACAAGC+TGG - chr7_2:78953356-78953375 Msa1079740:intron 45.0%
!!! TACAAGCTGGTTTTGTAGGG+TGG - chr7_2:78953369-78953388 Msa1079740:intron 45.0%
!!! TGGTTTTGTAGGGTGGTGTT+AGG - chr7_2:78953376-78953395 Msa1079740:intron 45.0%
!!! CTAGTTTTGGGGAGGAACAT+AGG + chr7_2:78953541-78953560 None:intergenic 45.0%
GATAGTCCAAGGGAGTGATA+AGG + chr7_2:78953570-78953589 None:intergenic 45.0%
!! GCTCAATAACGGATAGTCCA+AGG + chr7_2:78953581-78953600 None:intergenic 45.0%
TGACCCGAGTAGCTCAATAA+CGG + chr7_2:78953592-78953611 None:intergenic 45.0%
!!! GTCTAGTTTTGAGCGTGAAG+GGG - chr7_2:78953622-78953641 Msa1079740:intron 45.0%
!!! TCTAGTTTTGAGCGTGAAGG+GGG - chr7_2:78953623-78953642 Msa1079740:intron 45.0%
GATGACATCCATCAGAATCC+TGG - chr7_2:78953765-78953784 Msa1079740:intron 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG + chr7_2:78954838-78954857 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG + chr7_2:78954839-78954858 None:intergenic 45.0%
GCTCCTAGTCTATTGGAAGA+AGG - chr7_2:78955037-78955056 Msa1079740:CDS 45.0%
TTACTGCTGCTAGTGTCCTT+TGG - chr7_2:78955201-78955220 Msa1079740:five_prime_UTR 45.0%
!! AAAAAAAAAAAAAAATTAAC+GGG + chr7_2:78953445-78953464 None:intergenic 5.0%
GATCAAAACGCTCACGGTAG+GGG - chr7_2:78952191-78952210 Msa1079740:intron 50.0%
ATCAAAACGCTCACGGTAGG+GGG - chr7_2:78952192-78952211 Msa1079740:intron 50.0%
CTATTGCAGCTGGACAGGAA+AGG - chr7_2:78952382-78952401 Msa1079740:intron 50.0%
GAGTGCGTGAAGATGCTAGT+TGG - chr7_2:78952773-78952792 Msa1079740:intron 50.0%
TTGGGGAGGAACATAGGAGT+TGG + chr7_2:78953535-78953554 None:intergenic 50.0%
AAGCCACCTTATCACTCCCT+TGG - chr7_2:78953561-78953580 Msa1079740:intron 50.0%
AGTCCAAGGGAGTGATAAGG+TGG + chr7_2:78953567-78953586 None:intergenic 50.0%
! GAATGGTAATGCGACGATCC+AGG + chr7_2:78953786-78953805 None:intergenic 50.0%
GATGCTTGTGCATCAACGTC+CGG + chr7_2:78954670-78954689 None:intergenic 50.0%
AAGATCCAGGGTTCAAGTCC+TGG + chr7_2:78954794-78954813 None:intergenic 50.0%
ACTCTCTCGCTCTCTCTCTC+TGG - chr7_2:78951511-78951530 Msa1079740:three_prime_UTR 55.0%
TCAAAACGCTCACGGTAGGG+GGG - chr7_2:78952193-78952212 Msa1079740:intron 55.0%
CAGCTGGACAGGAAAGGTTC+AGG - chr7_2:78952388-78952407 Msa1079740:intron 55.0%
!!! GGTGGCTTCTAGTTTTGGGG+AGG + chr7_2:78953549-78953568 None:intergenic 55.0%
GCGACGATCCAGGATTCTGA+TGG + chr7_2:78953776-78953795 None:intergenic 55.0%
AAGGGCTGTGAGCAGAGAAG+AGG - chr7_2:78954174-78954193 Msa1079740:intron 55.0%
AGGGCTGTGAGCAGAGAAGA+GGG - chr7_2:78954175-78954194 Msa1079740:intron 55.0%
CCAGGGTTCAAGTCCTGGTA+AGG + chr7_2:78954789-78954808 None:intergenic 55.0%
CCTTACCAGGACTTGAACCC+TGG - chr7_2:78954786-78954805 Msa1079740:intron 55.0%
TCAGGCTCAGGTCAGAGCAG+TGG - chr7_2:78951625-78951644 Msa1079740:CDS 60.0%
GGGGGGTTGGGTAGCTCAAC+TGG + chr7_2:78954851-78954870 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78951212 78955474 78951212 ID=Msa1079740;Name=Msa1079740
chr7_2 mRNA 78951212 78955474 78951212 ID=Msa1079740-mRNA-1;Parent=Msa1079740;Name=Msa1079740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=401|1|1|1|1|1|6|336|214
chr7_2 exon 78951212 78951658 78951212 ID=Msa1079740-mRNA-1:exon:19753;Parent=Msa1079740-mRNA-1
chr7_2 exon 78952392 78952520 78952392 ID=Msa1079740-mRNA-1:exon:19752;Parent=Msa1079740-mRNA-1
chr7_2 exon 78953875 78953996 78953875 ID=Msa1079740-mRNA-1:exon:19751;Parent=Msa1079740-mRNA-1
chr7_2 exon 78954230 78954295 78954230 ID=Msa1079740-mRNA-1:exon:19750;Parent=Msa1079740-mRNA-1
chr7_2 exon 78954440 78954508 78954440 ID=Msa1079740-mRNA-1:exon:19749;Parent=Msa1079740-mRNA-1
chr7_2 exon 78954926 78955474 78954926 ID=Msa1079740-mRNA-1:exon:19748;Parent=Msa1079740-mRNA-1
chr7_2 five_prime_UTR 78955074 78955474 78955074 ID=Msa1079740-mRNA-1:five_prime_utr;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78954926 78955073 78954926 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78954440 78954508 78954440 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78954230 78954295 78954230 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78953875 78953996 78953875 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78952392 78952520 78952392 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 CDS 78951548 78951658 78951548 ID=Msa1079740-mRNA-1:cds;Parent=Msa1079740-mRNA-1
chr7_2 three_prime_UTR 78951212 78951547 78951212 ID=Msa1079740-mRNA-1:three_prime_utr;Parent=Msa1079740-mRNA-1
Gene Sequence

>Msa1079740

ATGAGTTCATCATCAGGCTCAGGTCAGAGCAGTGGCCATGATCTCTCTTTCAAGATCTTGTTGATTGGTGATTCTGGTGTTGGAAAAAGTTGTTTACTTGTCACTTTCATTTCCAGTTCATCTGTTGAAGATCTTTCACCTACCATTGGTGTTGATTTTAAGATCAAAACGCTCACGGTAGGGGGGAAAAGATTAAAGCTTACAATTTGGGACACAGCTGGACAGGAAAGGTTCAGGACTCTAACAAGTTCTTACTATAGAGGAGCACAAGGAATCATTCTCGTTTATGATGTCACAAGGAGAGAAACCTTTACAAACTTGTCAGAAGTGTGGTCTAAGGAATTGGAACTCTATTCAACTAATCAGGAGTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAAAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGCTTAGCTCTTGCTAAAGAACTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAGTGCTTTGAAGAACTCGCTCTAAAGATAATGGAAGCTCCTAGTCTATTGGAAGAAGGATCAGCAGCAACAAAAAGGAATGTCTTAAAACAGAAACAAGAACAACAGTCATCACAAAATGGAGGCTGTTGCTCTTAA
Protein sequence

>Msa1079740

MSSSSGSGQSSGHDLSFKILLIGDSGVGKSCLLVTFISSSSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQECVKMLVGNKVDKDSERAVSREEGLALAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSAATKRNVLKQKQEQQSSQNGGCCS*