AlfalfaGEDB | Msa1204590

M. sativa cultivar zhongmu-4 / Msa1204590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF14543.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204590	XP_003608454.2	98.098	631	12	0	1	631	1	631	0.0	1300

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204590	sp\|Q4V3D2\|ASP36_ARATH	31.863	408	221	18	55	424	46	434	2.62e-38	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1204590	-0.800359	1.495413e-48	-8.615850e-47
Msa0039200	Msa1204590	-0.819043	1.428334e-52	-8.615850e-47
Msa0046700	Msa1204590	-0.801338	9.437427e-49	-8.615850e-47
Msa0047470	Msa1204590	-0.805722	1.163466e-49	-8.615850e-47
Msa0054760	Msa1204590	-0.814085	1.843384e-51	-8.615850e-47
Msa0057740	Msa1204590	-0.830886	2.280585e-55	-8.615850e-47
Msa0086820	Msa1204590	-0.817530	3.144501e-52	-8.615850e-47
Msa0087880	Msa1204590	-0.800664	1.296069e-48	-8.615850e-47
Msa0103060	Msa1204590	-0.821849	3.243450e-53	-8.615850e-47
Msa0116950	Msa1204590	-0.826462	2.677361e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204590	MtrunA17_Chr4g0053721	97.022	638	12	1	1	631	1	638	0.0	1292
Msa1204590	MtrunA17_Chr5g0401601	74.491	639	147	5	9	631	9	647	0.0	989
Msa1204590	MtrunA17_Chr2g0320621	32.976	373	213	12	79	424	76	438	8.31e-49	177
Msa1204590	MtrunA17_Chr1g0179751	32.447	376	212	12	79	424	107	470	1.21e-47	175
Msa1204590	MtrunA17_Chr7g0265331	31.830	377	221	12	74	424	75	441	1.49e-46	171
Msa1204590	MtrunA17_Chr4g0027681	30.831	373	220	12	79	424	76	437	3.22e-45	167
Msa1204590	MtrunA17_Chr3g0130931	30.978	368	217	14	78	426	102	451	2.49e-38	147
Msa1204590	MtrunA17_Chr1g0189381	30.607	379	214	16	79	424	68	430	6.59e-34	135
Msa1204590	MtrunA17_Chr6g0484731	29.333	375	225	12	78	424	189	551	2.09e-32	132
Msa1204590	MtrunA17_Chr7g0221681	27.968	379	225	14	79	424	71	434	8.44e-31	126

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1204590	AT5G43100.1	59.667	600	234	5	34	631	31	624	0.0	758
Msa1204590	AT3G50050.1	57.504	633	243	8	10	631	15	632	0.0	719
Msa1204590	AT5G43100.2	65.487	452	149	4	34	484	31	476	0.0	612
Msa1204590	AT5G22850.1	33.422	377	216	11	74	424	74	441	4.96e-54	192
Msa1204590	AT1G08210.1	33.422	377	213	12	74	424	77	441	4.16e-49	179
Msa1204590	AT1G08210.3	32.626	377	216	11	74	424	125	489	5.86e-49	179
Msa1204590	AT1G08210.4	32.626	377	216	11	74	424	111	475	6.38e-49	179
Msa1204590	AT2G36670.2	32.808	381	211	14	74	424	93	458	1.99e-47	174
Msa1204590	AT2G36670.4	32.632	380	211	14	75	424	28	392	2.67e-47	172
Msa1204590	AT2G36670.3	32.632	380	211	14	75	424	28	392	2.67e-47	172

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Find 192 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAAATCATTATAATT+TGG	0.196794	8_1:-60375863	None:intergenic
AAACCAACTGTGCTGAGTTA+TGG	0.434621	8_1:+60376475	Msa1204590:CDS
AAATCATTATAATTTGGATC+TGG	0.457397	8_1:-60375857	None:intergenic
AAATGATTCTCTCTCTAGAT+GGG	0.569000	8_1:+60377222	Msa1204590:CDS
AACAAATTCAACCAAATCAG+TGG	0.593686	8_1:+60376551	Msa1204590:CDS
AACATTTCTCAGTAAACAAC+AGG	0.410030	8_1:-60379786	None:intergenic
AACCAACTGTGCTGAGTTAT+GGG	0.390028	8_1:+60376476	Msa1204590:CDS
AACCTTTCCGGTAGTTGACA+TGG	0.561389	8_1:+60376004	Msa1204590:CDS
AACTGAAGGATCCACTGATT+TGG	0.393066	8_1:-60376562	None:intergenic
AAGCTCGCTCTGATTTCCAA+AGG	0.652231	8_1:-60374678	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGGGACCAAAAATATAT+TGG	-	chr8_1:60370824-60370843	None:intergenic	30.0%
TAATGTGGAGGATTAAGATT+AGG	-	chr8_1:60371012-60371031	None:intergenic	30.0%
GATTAAGAAAATGCGAGTAA+CGG	-	chr8_1:60371235-60371254	None:intergenic	30.0%
GATATTATACAACAAGGCTT+TGG	+	chr8_1:60371310-60371329	Msa1204590:intron	30.0%
ACAATAAGAGCAAACATTTG+CGG	-	chr8_1:60371348-60371367	None:intergenic	30.0%
GTTTGCTCTTATTGTTGATA+CGG	+	chr8_1:60371353-60371372	Msa1204590:CDS	30.0%
TTTGCTCTTATTGTTGATAC+GGG	+	chr8_1:60371354-60371373	Msa1204590:CDS	30.0%
ACACATGAATCCAATAGAAA+AGG	-	chr8_1:60371459-60371478	None:intergenic	30.0%
GGAAATGTTTACACTTTGAT+TGG	+	chr8_1:60371582-60371601	Msa1204590:intron	30.0%
ATGTTTACACTTTGATTGGT+TGG	+	chr8_1:60371586-60371605	Msa1204590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	60370793	60379822	60370793	ID=Msa1204590;Name=Msa1204590
chr8_1	mRNA	60370793	60379822	60370793	ID=Msa1204590-mRNA-1;Parent=Msa1204590;Name=Msa1204590-mRNA-1;_AED=0.06;_eAED=0.06;_QI=190\|1\|1\|1\|1\|1\|12\|354\|631
chr8_1	exon	60370793	60371218	60370793	ID=Msa1204590-mRNA-1:exon:19530;Parent=Msa1204590-mRNA-1
chr8_1	exon	60371311	60371431	60371311	ID=Msa1204590-mRNA-1:exon:19531;Parent=Msa1204590-mRNA-1
chr8_1	exon	60374524	60374951	60374524	ID=Msa1204590-mRNA-1:exon:19532;Parent=Msa1204590-mRNA-1
chr8_1	exon	60375060	60375216	60375060	ID=Msa1204590-mRNA-1:exon:19533;Parent=Msa1204590-mRNA-1
chr8_1	exon	60375818	60375900	60375818	ID=Msa1204590-mRNA-1:exon:19534;Parent=Msa1204590-mRNA-1
chr8_1	exon	60375983	60376079	60375983	ID=Msa1204590-mRNA-1:exon:19535;Parent=Msa1204590-mRNA-1
chr8_1	exon	60376193	60376265	60376193	ID=Msa1204590-mRNA-1:exon:19536;Parent=Msa1204590-mRNA-1
chr8_1	exon	60376412	60376618	60376412	ID=Msa1204590-mRNA-1:exon:19537;Parent=Msa1204590-mRNA-1
chr8_1	exon	60376800	60376924	60376800	ID=Msa1204590-mRNA-1:exon:19538;Parent=Msa1204590-mRNA-1
chr8_1	exon	60377193	60377294	60377193	ID=Msa1204590-mRNA-1:exon:19539;Parent=Msa1204590-mRNA-1
chr8_1	exon	60377363	60377460	60377363	ID=Msa1204590-mRNA-1:exon:19540;Parent=Msa1204590-mRNA-1
chr8_1	exon	60379300	60379822	60379300	ID=Msa1204590-mRNA-1:exon:19541;Parent=Msa1204590-mRNA-1
chr8_1	five_prime_UTR	60370793	60370982	60370793	ID=Msa1204590-mRNA-1:five_prime_utr;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60370983	60371218	60370983	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60371311	60371431	60371311	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60374524	60374951	60374524	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60375060	60375216	60375060	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60375818	60375900	60375818	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60375983	60376079	60375983	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60376193	60376265	60376193	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60376412	60376618	60376412	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60376800	60376924	60376800	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60377193	60377294	60377193	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60377363	60377460	60377363	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	CDS	60379300	60379468	60379300	ID=Msa1204590-mRNA-1:cds;Parent=Msa1204590-mRNA-1
chr8_1	three_prime_UTR	60379469	60379822	60379469	ID=Msa1204590-mRNA-1:three_prime_utr;Parent=Msa1204590-mRNA-1

Gene Sequence

>Msa1204590

ATGGCACGGCCACTAACTCACCTCATCCTAATCTTAATCCTCCACATTACCCACACCATCGCCGGCGACACCGCATTCCTCCGTAACCGCCACCACGCTATGATTCTTCCTCTATACCTAACCACTCCTAATTCATCCACGTCAGCACTCGATCCTCGTCGCCAGCTTCACGGATCCGAATCGAAGCGTCACCCTAACGCTCGTATGAGACTCCACGATGATCTTCTTCTTAACGGATATTATACAACAAGGCTTTGGATCGGTACTCCTCCGCAAATGTTTGCTCTTATTGTTGATACGGGGAGTACTGTTACGTATGTTCCTTGCTCTACTTGTGAACAGTGTGGTAGGCATCAGGATCCGAAGTTTCAGCCAGACTTGTCAAGCACCTATCAACCTGTCAAATGCACATTGGATTGCAACTGTGACAATGACAGGATGCAATGTGTGTATGAGAGACAGTATGCTGAAATGAGTACTAGCAGTGGTGTCCTTGGAGAGGATGTCATATCCTTTGGAAATCAGAGCGAGCTTGCTCCACAGCGTGCTGTTTTTGGTTGTGAAAATGTTGAGACTGGTGATCTTTACAGTCAGCATGCTGATGGCATTATGGGTTTGGGCCGAGGAGATCTTAGTATCATGGATCAGCTGGTTGACAAAAATGTAGTTAGTGATTCATTCTCACTATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTTGGTGGCATATCTCCCCCGTCAGACATGGTCTTTGCACAATCGGATCCTGTGCGCAGTCCCTATTACAATATTGATTTGAAGGAGATACATGTTGCGGGGAAGCGGCTGCCTCTAAACCCAAGTGTTTTTGATGGAAAACATGGAACGGTCTTGGATAGTGGTACAACTTATGCATACCTACCGGAAGAAGCATTTCTTGCATTTAAAGAAGCTATTGTGAAGGAACTTCAATCTTTCAATCAAATCAGCGGTCCAGATCCAAATTATAATGATTTATGTTTTTCTGGTGCTGGAATTGATGTGTCACAACTCTCTAAAACCTTTCCGGTAGTTGACATGGTATTTGGAAATGGTCACAAGTACTCACTGTCACCTGAAAATTACATGTTCCGGCATTCAAAAGTAAGAGGTGCATATTGTCTGGGAATTTTTCAAAATGGAAAGGATCCAACTACTCTTTTAGGAGGTATCGTCGTCCGAAACACTCTTGTTTTGTATGATCGCGAGCAAACAAAAATTGGTTTTTGGAAAACCAACTGTGCTGAGTTATGGGAGAGACTGCAGATATCCAGTGCCCCACCACCAATGCCTCCAAATACAGAAGCAACAAATTCAACCAAATCAGTGGATCCTTCAGTTGCTCCATCTGTGTCACAACATAATGTACCTCCAGGTGAATTCCAAATCGCAGAAATAACAATAGCAGTTTCATTTAATATCAGCTACGATGATATGAAGCCTCGCCTTAAAGAATTGGCTGGACTCATAGCTCACGAGTTAAATGTTAATACTTCCCAGATCCACTTACTGAATTTTACAGCTTCTGGAAATGATTCTCTCTCTAGATGGGCCATAACCCCGAGGCCATATGCTGATTACTTTTCTAAGTCAACTGCAATGAATATAATTGGCCGGCTTGCTGAACACCGCATGCAACTTCCTGATGCCTTCGGAAGTTATAAGTTGATTGATTGGAATGTTATGCCTCCATCAAAAAGGAATTGGTGGCAGCGATATTACATGATTGTGGGCCTAGCTGTTCTTCTTACATTGCTTCTAGGATTATCAATATTTGGATTCTTTATTTGGAAAAAAAGACGGCAAAGCGCACATTCATATAAACCTGTTGATGTGGCTGTTCCTGAGCAAGAACTCCAGCCATTATGA

Protein sequence

>Msa1204590

MARPLTHLILILILHITHTIAGDTAFLRNRHHAMILPLYLTTPNSSTSALDPRRQLHGSESKRHPNARMRLHDDLLLNGYYTTRLWIGTPPQMFALIVDTGSTVTYVPCSTCEQCGRHQDPKFQPDLSSTYQPVKCTLDCNCDNDRMQCVYERQYAEMSTSSGVLGEDVISFGNQSELAPQRAVFGCENVETGDLYSQHADGIMGLGRGDLSIMDQLVDKNVVSDSFSLCYGGMDVGGGAMVLGGISPPSDMVFAQSDPVRSPYYNIDLKEIHVAGKRLPLNPSVFDGKHGTVLDSGTTYAYLPEEAFLAFKEAIVKELQSFNQISGPDPNYNDLCFSGAGIDVSQLSKTFPVVDMVFGNGHKYSLSPENYMFRHSKVRGAYCLGIFQNGKDPTTLLGGIVVRNTLVLYDREQTKIGFWKTNCAELWERLQISSAPPPMPPNTEATNSTKSVDPSVAPSVSQHNVPPGEFQIAEITIAVSFNISYDDMKPRLKELAGLIAHELNVNTSQIHLLNFTASGNDSLSRWAITPRPYADYFSKSTAMNIIGRLAEHRMQLPDAFGSYKLIDWNVMPPSKRNWWQRYYMIVGLAVLLTLLLGLSIFGFFIWKKRRQSAHSYKPVDVAVPEQELQPL*