AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378000 MtrunA17_Chr3g0130211 98.106 264 5 0 1 264 1 264 0.0 538
Msa0378000 MtrunA17_Chr5g0410921 32.046 259 137 13 29 264 983 1225 1.06e-23 100
Msa0378000 MtrunA17_Chr5g0410921 27.309 249 138 10 23 244 343 575 3.56e-16 78.2
Msa0378000 MtrunA17_Chr7g0264631 31.858 226 129 9 36 243 1081 1299 3.02e-22 96.3
Msa0378000 MtrunA17_Chr7g0264631 29.915 234 136 7 29 243 420 644 3.42e-19 87.0
Msa0378000 MtrunA17_Chr1g0180601 32.743 226 127 9 36 243 1055 1273 2.16e-21 93.6
Msa0378000 MtrunA17_Chr1g0180601 31.169 231 129 9 29 239 393 613 9.10e-20 89.0
Msa0378000 MtrunA17_Chr2g0285191 30.992 242 135 8 23 243 386 616 3.62e-21 92.8
Msa0378000 MtrunA17_Chr2g0285191 26.423 246 151 7 20 243 1035 1272 9.42e-18 82.8
Msa0378000 MtrunA17_Chr6g0481921 30.568 229 128 7 36 243 271 489 5.04e-21 92.4
Msa0378000 MtrunA17_Chr6g0481921 30.702 228 130 7 36 243 927 1146 4.31e-20 89.7
Msa0378000 MtrunA17_Chr2g0285311 31.004 229 127 7 36 243 369 587 1.34e-20 91.3
Msa0378000 MtrunA17_Chr2g0285311 29.386 228 133 7 36 243 1025 1244 4.01e-19 87.0
Msa0378000 MtrunA17_Chr2g0285301 30.131 229 129 7 36 243 364 582 5.18e-20 89.4
Msa0378000 MtrunA17_Chr2g0285301 25.203 246 154 7 20 243 1003 1240 3.71e-16 78.2
Msa0378000 MtrunA17_Chr1g0193991 29.832 238 137 7 28 243 1034 1263 7.87e-20 89.0
Msa0378000 MtrunA17_Chr1g0193991 29.130 230 130 8 36 243 389 607 2.08e-15 75.9
Msa0378000 MtrunA17_Chr4g0069401 30.870 230 127 8 36 243 1034 1253 1.85e-19 87.8
Msa0378000 MtrunA17_Chr4g0069401 30.328 244 137 8 26 246 361 594 7.29e-18 83.2
Msa0378000 MtrunA17_Chr1g0194001 29.412 238 138 8 28 243 137 366 2.12e-19 86.7
Msa0378000 MtrunA17_Chr5g0412741 29.461 241 143 8 23 243 444 677 2.24e-19 87.4
Msa0378000 MtrunA17_Chr4g0041871 28.571 245 142 8 36 259 1006 1238 2.27e-19 87.8
Msa0378000 MtrunA17_Chr4g0041871 28.279 244 148 8 21 244 326 562 5.29e-16 77.8
Msa0378000 MtrunA17_Chr4g0069351 30.328 244 137 8 26 246 366 599 5.97e-19 86.3
Msa0378000 MtrunA17_Chr4g0069351 29.915 234 124 8 36 243 1036 1255 1.83e-18 85.1
Msa0378000 MtrunA17_Chr5g0433051 28.696 230 137 6 32 243 462 682 7.90e-19 85.9
Msa0378000 MtrunA17_Chr5g0433071 28.384 229 139 5 32 243 464 684 1.65e-18 85.1
Msa0378000 MtrunA17_Chr8g0393151 30.667 225 127 7 53 253 33 252 1.77e-18 82.4
Msa0378000 MtrunA17_Chr4g0069361 29.915 234 124 8 36 243 1036 1255 1.95e-18 84.7
Msa0378000 MtrunA17_Chr4g0069361 28.514 249 145 8 26 251 366 604 1.16e-17 82.8
Msa0378000 MtrunA17_Chr7g0233901 26.033 242 146 9 21 239 340 571 1.96e-18 84.7
Msa0378000 MtrunA17_Chr7g0233901 29.565 230 132 6 36 243 995 1216 1.61e-17 82.0
Msa0378000 MtrunA17_Chr8g0344651 27.823 248 154 6 24 253 1230 1470 3.08e-18 84.3
Msa0378000 MtrunA17_Chr3g0123411 29.661 236 134 10 29 243 899 1123 4.31e-18 84.0
Msa0378000 MtrunA17_Chr3g0123411 27.426 237 143 7 24 243 243 467 4.14e-13 68.9
Msa0378000 MtrunA17_Chr4g0039821 30.870 230 127 8 36 243 1034 1253 6.77e-18 83.2
Msa0378000 MtrunA17_Chr4g0039821 29.167 240 139 6 26 243 364 594 2.01e-13 70.1
Msa0378000 MtrunA17_Chr3g0119381 30.165 242 134 9 26 243 387 617 7.74e-18 83.2
Msa0378000 MtrunA17_Chr3g0119381 28.384 229 136 6 36 244 1057 1277 2.31e-15 75.9
Msa0378000 MtrunA17_Chr3g0138211 29.098 244 134 8 26 243 384 614 8.73e-18 82.8
Msa0378000 MtrunA17_Chr3g0138211 28.455 246 124 9 36 243 1026 1257 4.93e-14 72.0
Msa0378000 MtrunA17_Chr4g0061601 29.075 227 135 6 36 243 387 606 8.82e-18 82.8
Msa0378000 MtrunA17_Chr7g0227391 25.446 224 142 6 40 244 429 646 1.16e-17 82.4
Msa0378000 MtrunA17_Chr6g0452171 30.213 235 137 8 36 250 1020 1247 1.28e-17 82.4
Msa0378000 MtrunA17_Chr6g0452171 26.754 228 138 7 36 243 361 579 6.97e-16 77.4
Msa0378000 MtrunA17_Chr4g0069411 30.000 230 129 8 36 243 1050 1269 1.51e-17 82.4
Msa0378000 MtrunA17_Chr4g0069411 29.310 232 133 7 36 246 396 617 8.91e-16 77.0
Msa0378000 MtrunA17_Chr3g0128381 28.755 233 135 7 36 243 390 616 1.78e-17 82.0
Msa0378000 MtrunA17_Chr6g0452141 27.632 228 136 7 36 243 362 580 2.36e-17 81.6
Msa0378000 MtrunA17_Chr6g0452141 30.126 239 134 9 36 251 1017 1245 3.85e-17 81.3
Msa0378000 MtrunA17_Chr6g0451881 24.254 268 164 9 20 257 343 601 3.84e-17 81.3
Msa0378000 MtrunA17_Chr6g0451881 30.342 234 130 9 40 250 1011 1234 3.93e-16 78.2
Msa0378000 MtrunA17_Chr7g0224741 27.757 263 153 9 12 242 18 275 4.16e-17 79.0
Msa0378000 MtrunA17_Chr6g0451911 26.104 249 149 7 36 257 361 601 4.91e-17 80.9
Msa0378000 MtrunA17_Chr6g0451911 28.631 241 132 8 36 250 1015 1241 6.90e-16 77.4
Msa0378000 MtrunA17_Chr6g0452071 30.126 239 134 9 36 251 213 441 5.51e-17 80.1
Msa0378000 MtrunA17_Chr6g0453051 30.568 229 128 9 36 243 1008 1226 8.35e-17 80.1
Msa0378000 MtrunA17_Chr6g0453051 30.131 229 129 8 36 243 363 581 2.36e-15 75.9
Msa0378000 MtrunA17_Chr6g0486841 28.175 252 142 10 36 264 1002 1237 8.83e-17 80.1
Msa0378000 MtrunA17_Chr6g0486841 27.917 240 144 8 25 243 346 577 1.02e-12 67.8
Msa0378000 MtrunA17_Chr3g0129301 31.667 180 97 6 21 192 422 583 1.06e-16 79.7
Msa0378000 MtrunA17_Chr6g0452041 29.825 228 133 8 36 243 1019 1239 1.17e-16 79.7
Msa0378000 MtrunA17_Chr6g0452041 26.000 250 148 8 36 257 361 601 4.70e-16 77.8
Msa0378000 MtrunA17_Chr7g0249091 30.579 242 130 9 34 243 84 319 1.78e-16 78.2
Msa0378000 MtrunA17_Chr1g0178481 27.941 204 126 4 54 239 395 595 2.07e-16 78.6
Msa0378000 MtrunA17_Chr6g0452061 29.870 231 129 9 36 243 529 749 3.07e-16 78.2
Msa0378000 MtrunA17_Chr1g0194031 29.130 230 130 8 36 243 384 602 3.69e-16 78.2
Msa0378000 MtrunA17_Chr6g0474071 29.279 222 134 6 40 243 217 433 4.17e-16 77.4
Msa0378000 MtrunA17_Chr1g0202431 27.803 223 149 5 55 265 50 272 4.78e-16 77.4
Msa0378000 MtrunA17_Chr6g0452111 24.719 267 162 9 21 257 351 608 6.58e-16 77.4
Msa0378000 MtrunA17_Chr6g0452111 29.412 238 135 9 36 250 1018 1245 3.75e-15 75.1
Msa0378000 MtrunA17_Chr1g0156821 28.000 225 139 7 36 243 994 1212 1.15e-15 76.6
Msa0378000 MtrunA17_Chr8g0366481 31.200 250 139 11 30 259 381 617 2.23e-15 75.5
Msa0378000 MtrunA17_Chr8g0393191 28.780 205 118 5 29 206 36 239 1.28e-14 73.6
Msa0378000 MtrunA17_Chr3g0101481 30.973 226 132 6 29 243 617 829 1.47e-14 73.6
Msa0378000 MtrunA17_Chr6g0452081 28.037 214 121 8 36 229 27 227 2.89e-14 70.1
Msa0378000 MtrunA17_Chr8g0341811 30.222 225 131 7 30 243 433 642 3.03e-14 72.4
Msa0378000 MtrunA17_Chr7g0257341 29.944 177 112 3 27 192 545 720 5.08e-14 72.0
Msa0378000 MtrunA17_Chr1g0156551 27.513 189 130 5 67 252 452 636 1.21e-13 70.5
Msa0378000 MtrunA17_Chr5g0445741 30.045 223 132 6 35 246 629 838 1.23e-13 70.9
Msa0378000 MtrunA17_Chr8g0353781 29.851 201 115 6 56 243 617 804 1.62e-13 70.5
Msa0378000 MtrunA17_Chr8g0341751 31.343 201 112 6 56 243 442 629 3.08e-13 69.3
Msa0378000 MtrunA17_Chr5g0412721 28.634 227 130 6 35 246 618 827 3.79e-13 69.3
Msa0378000 MtrunA17_Chr1g0156441 28.718 195 120 7 67 252 60 244 6.18e-13 67.0
Msa0378000 MtrunA17_Chr1g0195691 28.444 225 144 8 27 243 640 855 1.50e-12 67.4
Msa0378000 MtrunA17_Chr7g0222781 23.144 229 148 6 35 243 1154 1374 1.67e-12 67.4
Msa0378000 MtrunA17_Chr5g0445671 29.596 223 133 6 35 246 238 447 2.63e-12 66.6
Msa0378000 MtrunA17_Chr3g0101461 27.273 231 142 6 24 243 422 637 4.46e-12 65.9
Msa0378000 MtrunA17_Chr1g0212701 23.581 229 147 6 35 243 1146 1366 4.76e-12 65.9
Msa0378000 MtrunA17_Chr3g0101441 29.386 228 141 6 24 243 422 637 5.22e-12 65.9
Msa0378000 MtrunA17_Chr1g0211721 26.984 189 131 5 67 252 375 559 7.43e-12 65.1
Msa0378000 MtrunA17_Chr8g0341761 27.753 227 134 7 30 243 592 801 1.12e-11 64.7
Msa0378000 MtrunA17_Chr3g0101471 28.139 231 140 7 24 243 420 635 1.39e-11 64.7
Msa0378000 MtrunA17_Chr3g0093091 27.027 185 117 5 56 226 638 818 5.47e-11 62.8
Msa0378000 MtrunA17_Chr1g0181461 34.302 172 102 6 41 208 337 501 6.27e-11 62.4
Msa0378000 MtrunA17_Chr8g0363771 29.565 230 135 9 27 243 626 841 8.70e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378000 AT4G33460.1 70.124 241 70 2 27 265 31 271 3.77e-124 354
Msa0378000 AT2G36910.1 30.973 226 131 10 36 243 1024 1242 3.05e-23 99.4
Msa0378000 AT2G36910.1 30.303 231 129 10 30 239 363 582 8.04e-18 83.6
Msa0378000 AT1G70610.2 28.807 243 142 9 23 243 262 495 8.01e-21 92.0
Msa0378000 AT1G70610.1 28.807 243 142 9 23 243 443 676 8.06e-21 92.0
Msa0378000 AT4G18050.2 30.568 229 128 7 36 243 365 583 1.06e-20 92.0
Msa0378000 AT4G18050.2 29.915 234 124 8 36 243 1003 1222 6.92e-19 86.7
Msa0378000 AT4G18050.1 30.568 229 128 7 36 243 355 573 1.15e-20 92.0
Msa0378000 AT4G18050.1 29.915 234 124 8 36 243 993 1212 7.24e-19 86.7
Msa0378000 AT3G62150.3 30.992 242 132 9 26 243 391 621 3.19e-20 90.5
Msa0378000 AT3G62150.3 32.500 240 128 12 28 243 1042 1271 2.12e-19 88.2
Msa0378000 AT3G62150.2 30.992 242 132 9 26 243 391 621 3.19e-20 90.5
Msa0378000 AT3G62150.2 32.500 240 128 12 28 243 1042 1271 2.12e-19 88.2
Msa0378000 AT3G62150.1 30.992 242 132 9 26 243 391 621 3.19e-20 90.5
Msa0378000 AT3G62150.1 32.500 240 128 12 28 243 1042 1271 2.12e-19 88.2
Msa0378000 AT5G46540.1 30.568 229 128 7 36 243 357 575 4.20e-20 90.1
Msa0378000 AT5G46540.1 30.342 234 123 9 36 243 1005 1224 1.47e-17 82.8
Msa0378000 AT2G47000.6 31.325 249 139 10 18 243 1022 1261 1.07e-19 89.0
Msa0378000 AT2G47000.6 28.745 247 141 9 21 243 367 602 5.22e-18 84.0
Msa0378000 AT2G47000.5 31.325 249 139 10 18 243 1022 1261 1.07e-19 89.0
Msa0378000 AT2G47000.5 28.745 247 141 9 21 243 367 602 5.22e-18 84.0
Msa0378000 AT2G47000.1 31.325 249 139 10 18 243 1022 1261 1.07e-19 89.0
Msa0378000 AT2G47000.1 28.745 247 141 9 21 243 367 602 5.22e-18 84.0
Msa0378000 AT1G02520.1 30.380 237 121 8 36 243 1032 1253 1.19e-19 89.0
Msa0378000 AT1G02520.1 30.000 230 128 8 36 243 381 599 4.36e-18 84.3
Msa0378000 AT1G02520.2 30.380 237 121 8 36 243 1032 1253 1.19e-19 89.0
Msa0378000 AT1G02520.2 30.000 230 128 8 36 243 381 599 4.36e-18 84.3
Msa0378000 AT1G02520.3 30.380 237 121 8 36 243 1032 1253 1.19e-19 89.0
Msa0378000 AT1G02520.3 30.000 230 128 8 36 243 381 599 4.36e-18 84.3
Msa0378000 AT4G01830.2 31.250 224 125 6 42 243 755 971 1.27e-19 88.6
Msa0378000 AT4G01830.2 29.075 227 134 6 36 243 119 337 4.44e-17 81.3
Msa0378000 AT4G01830.1 31.250 224 125 6 42 243 989 1205 1.86e-19 88.2
Msa0378000 AT4G01830.1 29.075 227 134 6 36 243 353 571 6.02e-17 80.9
Msa0378000 AT4G01820.1 31.250 224 125 6 42 243 988 1204 4.69e-19 87.0
Msa0378000 AT4G01820.1 30.870 230 126 7 36 243 348 566 6.02e-17 80.9
Msa0378000 AT1G27940.2 29.362 235 132 8 28 239 148 371 1.18e-18 85.9
Msa0378000 AT1G27940.2 28.261 230 132 8 36 243 790 1008 6.76e-18 83.6
Msa0378000 AT1G65410.1 30.579 242 130 7 34 243 83 318 1.19e-18 84.7
Msa0378000 AT1G27940.1 29.778 225 126 7 36 239 372 585 1.76e-18 85.5
Msa0378000 AT1G27940.1 28.261 230 132 8 36 243 1004 1222 1.01e-17 83.2
Msa0378000 AT1G02530.1 29.515 227 133 6 36 243 368 586 4.57e-18 84.3
Msa0378000 AT1G02530.1 29.130 230 133 6 36 243 1027 1248 7.38e-18 83.6
Msa0378000 AT3G28860.1 30.131 229 129 7 36 243 1010 1228 5.55e-18 84.0
Msa0378000 AT3G28860.1 29.114 237 139 7 28 243 355 583 4.30e-17 81.3
Msa0378000 AT1G28010.1 28.889 225 128 7 36 239 373 586 5.65e-18 84.0
Msa0378000 AT1G28010.1 28.509 228 134 8 36 243 1006 1224 2.17e-17 82.4
Msa0378000 AT2G47000.3 29.218 243 137 9 25 243 371 602 6.11e-18 84.0
Msa0378000 AT2G47000.7 29.218 243 137 9 25 243 371 602 6.11e-18 84.0
Msa0378000 AT1G02530.2 29.515 227 133 6 36 243 368 586 6.30e-18 83.6
Msa0378000 AT2G47000.4 29.218 243 137 9 25 243 371 602 6.37e-18 84.0
Msa0378000 AT2G47000.2 29.218 243 137 9 25 243 371 602 6.44e-18 84.0
Msa0378000 AT3G28345.1 26.531 245 153 6 36 261 359 595 1.59e-17 82.8
Msa0378000 AT3G28345.1 27.311 238 140 7 36 250 995 1222 1.32e-15 77.0
Msa0378000 AT1G10680.1 29.870 231 127 11 36 243 982 1200 2.61e-17 82.0
Msa0378000 AT1G10680.1 25.991 227 135 8 39 243 364 579 2.46e-13 70.1
Msa0378000 AT5G58270.1 27.706 231 140 7 31 243 474 695 6.15e-17 80.9
Msa0378000 AT4G01820.2 30.870 230 126 7 36 243 348 566 8.56e-17 80.5
Msa0378000 AT3G28390.1 27.273 242 137 9 24 243 341 565 8.83e-17 80.5
Msa0378000 AT3G28390.1 29.461 241 132 9 29 244 974 1201 1.51e-16 79.7
Msa0378000 AT4G28630.1 28.279 244 143 9 18 243 424 653 1.25e-16 79.7
Msa0378000 AT4G25960.1 28.452 239 131 9 31 244 397 620 1.96e-16 79.3
Msa0378000 AT2G13610.1 32.558 172 99 4 54 209 61 231 2.00e-16 79.3
Msa0378000 AT4G25450.3 28.378 222 136 5 40 243 305 521 2.27e-16 79.0
Msa0378000 AT4G28620.1 28.384 229 141 8 31 243 434 655 2.39e-16 79.0
Msa0378000 AT4G25450.1 28.378 222 136 5 40 243 474 690 3.31e-16 78.6
Msa0378000 AT4G25750.1 28.509 228 141 7 55 265 30 252 3.34e-16 78.6
Msa0378000 AT5G14100.1 30.165 242 139 8 23 241 38 272 3.36e-16 76.6
Msa0378000 AT3G28380.1 27.391 230 134 8 36 243 359 577 5.67e-16 78.2
Msa0378000 AT3G28380.1 28.755 233 121 8 40 243 999 1215 8.09e-16 77.4
Msa0378000 AT5G39040.1 28.634 227 136 7 36 243 396 615 7.41e-16 77.4
Msa0378000 AT3G28415.1 28.700 223 134 7 40 243 980 1196 7.92e-16 77.8
Msa0378000 AT3G28415.1 25.306 245 140 9 27 243 327 556 2.96e-15 75.9
Msa0378000 AT3G28415.2 28.700 223 134 7 40 243 988 1204 9.92e-16 77.4
Msa0378000 AT3G28415.2 25.306 245 140 9 27 243 335 564 3.61e-15 75.5
Msa0378000 AT5G64840.1 32.759 174 103 5 21 192 414 575 6.73e-15 74.7
Msa0378000 AT1G67940.1 32.353 204 114 7 54 240 43 239 9.32e-15 72.4
Msa0378000 AT3G28360.1 28.395 243 133 10 24 243 340 564 1.09e-14 74.3
Msa0378000 AT3G28360.1 26.957 230 139 8 40 248 985 1206 1.17e-13 71.2
Msa0378000 AT5G03910.1 28.079 203 125 4 55 239 412 611 5.13e-14 72.0
Msa0378000 AT2G47800.1 30.357 224 141 8 27 243 631 846 6.17e-14 72.0
Msa0378000 AT3G47760.1 27.143 210 134 7 33 227 571 776 9.02e-14 71.2
Msa0378000 AT3G47760.2 27.143 210 134 7 33 227 581 786 1.01e-13 71.2
Msa0378000 AT3G47760.3 27.143 210 134 7 33 227 611 816 1.06e-13 71.2
Msa0378000 AT5G09930.1 31.288 163 88 5 39 192 414 561 1.11e-13 70.9
Msa0378000 AT2G41700.1 30.508 177 111 3 27 192 540 715 1.24e-13 71.2
Msa0378000 AT2G41700.2 30.508 177 111 3 27 192 470 645 1.26e-13 71.2
Msa0378000 AT3G47750.1 28.022 182 113 6 60 227 640 817 2.49e-13 70.1
Msa0378000 AT1G10680.2 26.087 230 131 8 39 243 364 579 3.00e-13 70.1
Msa0378000 AT1G10680.2 29.891 184 100 9 36 197 982 1158 4.80e-12 66.2
Msa0378000 AT3G47740.1 27.128 188 119 6 54 227 629 812 4.30e-13 69.3
Msa0378000 AT5G52860.1 29.204 226 141 8 55 265 44 265 4.61e-13 69.3
Msa0378000 AT2G39480.2 23.077 234 152 6 35 248 977 1202 4.76e-13 69.3
Msa0378000 AT2G39480.1 23.077 234 152 6 35 248 1157 1382 5.69e-13 69.3
Msa0378000 AT3G47780.1 27.419 186 117 6 56 227 634 815 6.24e-13 68.9
Msa0378000 AT5G61700.1 27.650 217 136 8 27 227 586 797 8.93e-13 68.6
Msa0378000 AT3G47770.2 26.486 185 112 7 60 227 635 812 2.39e-12 67.0
Msa0378000 AT3G47770.1 26.486 185 112 7 60 227 609 786 2.61e-12 67.0
Msa0378000 AT5G61740.1 28.342 187 114 7 56 227 608 789 2.87e-12 67.0
Msa0378000 AT5G61740.3 28.342 187 114 7 56 227 469 650 2.88e-12 67.0
Msa0378000 AT3G60970.1 26.941 219 138 7 35 243 213 419 3.07e-12 67.0
Msa0378000 AT5G61740.2 28.342 187 114 7 56 227 574 755 3.15e-12 66.6
Msa0378000 AT3G21250.6 30.568 229 131 10 28 243 174 387 4.70e-12 66.2
Msa0378000 AT3G21250.3 30.568 229 131 10 28 243 174 387 4.70e-12 66.2
Msa0378000 AT3G21250.2 30.568 229 131 10 28 243 590 803 9.92e-12 65.5
Msa0378000 AT3G21250.4 30.568 229 131 10 28 243 596 809 1.01e-11 65.5
Msa0378000 AT4G30300.1 27.778 162 99 4 58 207 7 162 2.73e-11 61.2
Msa0378000 AT3G55320.1 22.707 229 149 6 35 243 1158 1378 3.91e-11 63.5
Msa0378000 AT3G47790.1 24.880 209 130 7 56 248 607 804 5.67e-11 63.2
Msa0378000 AT4G19210.1 25.628 199 137 6 61 252 364 558 8.28e-11 62.4
Msa0378000 AT5G61700.2 26.923 208 132 7 27 219 586 788 8.34e-11 62.4
Msa0378000 AT5G61700.4 26.923 208 132 7 27 219 586 788 8.34e-11 62.4

Find 76 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACGCTCTTGAAGATTT+TGG 0.120846 3_1:+78705143 Msa0378000:CDS
GAACCTGATGATCGGGATTT+TGG 0.147200 3_1:-78705227 None:intergenic
GCATTCCTTCTGGACAATTT+TGG 0.170686 3_1:+78705091 Msa0378000:CDS
CCGAAGAAGTTACAGCATTA+TGG 0.191034 3_1:+78708596 Msa0378000:CDS
TAGTTTGGATGGAGAAATTT+TGG 0.214249 3_1:-78708942 None:intergenic
TGCTCAATTCGCATTCCTTC+TGG 0.231793 3_1:+78705081 Msa0378000:CDS
AGAAATAAACCTTGTAGTTT+TGG 0.241254 3_1:-78704883 None:intergenic
TCTGACCACCACTCAGAGTT+TGG 0.297697 3_1:-78707471 None:intergenic
AAGCAGCGGGTTGCTATTGC+TGG 0.329556 3_1:+78707493 Msa0378000:CDS
AATTTATTTAAGAATTAATC+TGG 0.331873 3_1:-78708750 None:intergenic
CGAAGAAGTTACAGCATTAT+GGG 0.332668 3_1:+78708597 Msa0378000:CDS
AGAATTAATCTGGTTAATAT+AGG 0.339734 3_1:-78708740 None:intergenic
GTAGATTCTGATGTTGCATT+TGG 0.354577 3_1:+78707265 Msa0378000:CDS
CGTCCCTGTGGCTCATAGTT+TGG 0.361266 3_1:-78708957 None:intergenic
AAAAGCTGTTAGGAACTGTT+TGG 0.385689 3_1:+78708567 Msa0378000:CDS
GGTCTATTCACTCCAACTTC+AGG 0.410249 3_1:+78705168 Msa0378000:CDS
AAAGTTTCGCGCGATAGAAT+AGG 0.415023 3_1:+78704773 Msa0378000:five_prime_UTR
TTGGTGTTATAAAAGCTGTT+AGG 0.428778 3_1:+78708557 Msa0378000:CDS
AGCTTGTAAGGTTCTGTTGT+TGG 0.428980 3_1:+78707528 Msa0378000:CDS
TTTCCAAAATCCCGATCATC+AGG 0.430616 3_1:+78705224 Msa0378000:CDS
GTTAATATAGGCAGATTGTC+TGG 0.431562 3_1:-78708728 None:intergenic
TGCTCTAGCAGAAGCTTGTA+AGG 0.448798 3_1:+78707516 Msa0378000:CDS
ATTATGGGTCACCCATCGTT+TGG 0.449515 3_1:+78708612 Msa0378000:CDS
TCTGATGTTGCATTTGGTCT+TGG 0.457788 3_1:+78707271 Msa0378000:CDS
CCATAATGCTGTAACTTCTT+CGG 0.458943 3_1:-78708596 None:intergenic
TGGATGCTTCTTGGACCCAA+TGG 0.461283 3_1:+78705111 Msa0378000:CDS
ACATATACAGTTCCTGAAGT+TGG 0.463116 3_1:-78705180 None:intergenic
CTGACGATGAAGTCAGATCC+AGG 0.466788 3_1:+78707308 Msa0378000:CDS
AAGGAGATGCAGCATGCATA+AGG 0.484586 3_1:+78708692 Msa0378000:CDS
TCACCTGGTCAGTTTCATCT+AGG 0.492539 3_1:-78707567 None:intergenic
CACTTCCCACCAAAACTACA+AGG 0.493740 3_1:+78704874 Msa0378000:CDS
CTTCTTGGACCCAATGGCTG+TGG 0.503716 3_1:+78705117 Msa0378000:CDS
AAACTATGAGCCACAGGGAC+GGG 0.515269 3_1:+78708959 Msa0378000:three_prime_UTR
GTGGATGGTATTGCAATTGA+AGG 0.515987 3_1:+78704997 Msa0378000:CDS
TCACGAGCTTTACATGCTGT+TGG 0.516395 3_1:+78707334 Msa0378000:CDS
GACGGGCAATACCTTGTAAA+GGG 0.520584 3_1:+78708976 Msa0378000:three_prime_UTR
ACTAAACTCACATGATTGAA+AGG 0.529029 3_1:+78708812 Msa0378000:three_prime_UTR
CTCTAGTTCTTCCAAACGAT+GGG 0.530874 3_1:-78708623 None:intergenic
TGCAGATGGTGCAATCTACA+TGG 0.533838 3_1:+78708648 Msa0378000:CDS
TTCAGGGGCAAAAGCGTGGA+TGG 0.537183 3_1:+78704982 Msa0378000:intron
GGACGGGCAATACCTTGTAA+AGG 0.538432 3_1:+78708975 Msa0378000:three_prime_UTR
AGCATCCAAAATTGTCCAGA+AGG 0.543280 3_1:-78705096 None:intergenic
CCTGTGGCTCATAGTTTGGA+TGG 0.545659 3_1:-78708953 None:intergenic
AAGAATAATTACCCTTTACA+AGG 0.548284 3_1:-78708987 None:intergenic
CACATCCTTAGTTTGTCTTG+CGG 0.549898 3_1:-78705043 None:intergenic
CCATCCAAACTATGAGCCAC+AGG 0.552034 3_1:+78708953 Msa0378000:three_prime_UTR
GTTCACCGCAAGACAAACTA+AGG 0.565139 3_1:+78705038 Msa0378000:CDS
GAGTGGTGGTCAGAAGCAGC+GGG 0.565963 3_1:+78707480 Msa0378000:CDS
TGGTTTATCTGACTACATGA+AGG 0.572427 3_1:+78707354 Msa0378000:CDS
TTTGGACAGGAAAACAAAGA+GGG 0.574001 3_1:-78708924 None:intergenic
GTGGGAAGTGTAGAATGGAT+AGG 0.593344 3_1:-78704861 None:intergenic
TTCAGGAACTGTATATGTGA+AGG 0.598227 3_1:+78705185 Msa0378000:CDS
ACTCTAGTTCTTCCAAACGA+TGG 0.613998 3_1:-78708624 None:intergenic
TGAGTGGTGGTCAGAAGCAG+CGG 0.616619 3_1:+78707479 Msa0378000:CDS
TAGGAGCAACAAGATGATGA+GGG 0.616965 3_1:-78704842 None:intergenic
AATCTACATGGAGGATGGCA+AGG 0.620010 3_1:+78708660 Msa0378000:CDS
GGTGCAATCTACATGGAGGA+TGG 0.621552 3_1:+78708655 Msa0378000:CDS
CAAGGTATTGCCCGTCCCTG+TGG 0.621827 3_1:-78708969 None:intergenic
ATAGGAGCAACAAGATGATG+AGG 0.621872 3_1:-78704843 None:intergenic
GCAACATCAGAATCTACTGT+AGG 0.623964 3_1:-78707259 None:intergenic
ATGTAAAGCTCGTGACACCC+TGG 0.625364 3_1:-78707326 None:intergenic
ATAGAATAGGAGAAAGAAGA+GGG 0.625426 3_1:+78704786 Msa0378000:five_prime_UTR
GATGGCAAGGTAGTCATGCA+AGG 0.633558 3_1:+78708673 Msa0378000:CDS
GATAGAATAGGAGAAAGAAG+AGG 0.634441 3_1:+78704785 Msa0378000:five_prime_UTR
GAAGAACTAGAGTATGCAGA+TGG 0.648480 3_1:+78708634 Msa0378000:CDS
TCTGTCCAAACTCTGAGTGG+TGG 0.649299 3_1:+78707466 Msa0378000:CDS
TGACGATGAAGTCAGATCCA+GGG 0.649900 3_1:+78707309 Msa0378000:CDS
CAAACTATGAGCCACAGGGA+CGG 0.651502 3_1:+78708958 Msa0378000:three_prime_UTR
ATTCCTAGATGAAACTGACC+AGG 0.662065 3_1:+78707564 Msa0378000:CDS
TGGACAGGAAAACAAAGAGG+GGG 0.664926 3_1:-78708922 None:intergenic
AGATCTGTCCAAACTCTGAG+TGG 0.679579 3_1:+78707463 Msa0378000:CDS
CATCCAAACTATGAGCCACA+GGG 0.685224 3_1:+78708954 Msa0378000:three_prime_UTR
AGGAGCAACAAGATGATGAG+GGG 0.692425 3_1:-78704841 None:intergenic
TTGGACAGGAAAACAAAGAG+GGG 0.702018 3_1:-78708923 None:intergenic
GGACAGGAAAACAAAGAGGG+GGG 0.710974 3_1:-78708921 None:intergenic
AGATGGTGCAATCTACATGG+AGG 0.827838 3_1:+78708651 Msa0378000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATATATTTTGTATAAT+TGG - chr3_1:78704676-78704695 None:intergenic 10.0%
!!! TATAAAAGTTCATTTTTTTA+TGG + chr3_1:78705698-78705717 Msa0378000:intron 10.0%
!!! ATAAAAGTTCATTTTTTTAT+GGG + chr3_1:78705699-78705718 Msa0378000:intron 10.0%
!! TTGTTCAAAAAAAAAAAAAA+TGG + chr3_1:78706422-78706441 Msa0378000:intron 10.0%
!! TGTTCAAAAAAAAAAAAAAT+GGG + chr3_1:78706423-78706442 Msa0378000:intron 10.0%
!! AATTTATTTAAGAATTAATC+TGG - chr3_1:78708753-78708772 None:intergenic 10.0%
!!! TTTCAATCAATTTTTCATTT+CGG + chr3_1:78704909-78704928 Msa0378000:intron 15.0%
!!! TATAATATTTTCATTCTCAT+GGG - chr3_1:78705287-78705306 None:intergenic 15.0%
!!! TTATAATATTTTCATTCTCA+TGG - chr3_1:78705288-78705307 None:intergenic 15.0%
!!! AATAAATATTTTAGTGATGT+AGG + chr3_1:78705963-78705982 Msa0378000:intron 15.0%
!! GTTCAAAAAAAAAAAAAATG+GGG + chr3_1:78706424-78706443 Msa0378000:intron 15.0%
!!! TTGTTTTCAGATATTTATAT+AGG - chr3_1:78706608-78706627 None:intergenic 15.0%
!!! AACATAAATTTGTATTGATT+GGG - chr3_1:78707691-78707710 None:intergenic 15.0%
!!! AAACATAAATTTGTATTGAT+TGG - chr3_1:78707692-78707711 None:intergenic 15.0%
!!! CTATTTTCAAAATCATAAAT+TGG - chr3_1:78708112-78708131 None:intergenic 15.0%
!!! CAATTTATGATTTTGAAAAT+AGG + chr3_1:78708110-78708129 Msa0378000:intron 15.0%
!! AAAAAAAAAAACTCAAAGTA+AGG + chr3_1:78708871-78708890 Msa0378000:three_prime_UTR 15.0%
!! AAAAAAAAAACTCAAAGTAA+GGG + chr3_1:78708872-78708891 Msa0378000:three_prime_UTR 15.0%
!!! TTTTGGAAAACAAAACTTTT+AGG - chr3_1:78705213-78705232 None:intergenic 20.0%
!!! TGAATTAGCATTGAAAAAAA+AGG - chr3_1:78705252-78705271 None:intergenic 20.0%
!!! TGTAAAACTTTTTACACTAA+CGG - chr3_1:78705427-78705446 None:intergenic 20.0%
!! TTTAAAGGAGATATACAAAA+GGG - chr3_1:78705756-78705775 None:intergenic 20.0%
!! ATTTAAAGGAGATATACAAA+AGG - chr3_1:78705757-78705776 None:intergenic 20.0%
!!! AAGAAATATTTTAGTGATGT+AGG - chr3_1:78705855-78705874 None:intergenic 20.0%
!!! TTTTTCCCTAATAGTTTAAA+AGG + chr3_1:78706367-78706386 Msa0378000:intron 20.0%
!!! TTTTCCCTAATAGTTTAAAA+GGG + chr3_1:78706368-78706387 Msa0378000:intron 20.0%
!! TTGGTTTAGGAATTAAAAAA+TGG + chr3_1:78706458-78706477 Msa0378000:intron 20.0%
!! AAAAATTTAGAGGGAAAATT+TGG - chr3_1:78706867-78706886 None:intergenic 20.0%
!! GTAATGAAGAAAAATTTAGA+GGG - chr3_1:78706876-78706895 None:intergenic 20.0%
!! TGTAATGAAGAAAAATTTAG+AGG - chr3_1:78706877-78706896 None:intergenic 20.0%
!!! CATTTTGTGAATGATTATTT+TGG - chr3_1:78707094-78707113 None:intergenic 20.0%
!! TCTAGTTGTATGATAAAAAT+TGG - chr3_1:78707170-78707189 None:intergenic 20.0%
!! ATTTATGTTTGTCTATTCTT+TGG + chr3_1:78707702-78707721 Msa0378000:intron 20.0%
!! TTAGAATTTAGAAATGTTAG+TGG + chr3_1:78707817-78707836 Msa0378000:intron 20.0%
!! AGAATTAATCTGGTTAATAT+AGG - chr3_1:78708743-78708762 None:intergenic 20.0%
!!! ATCTGAAATTGTTTTTTGTT+AGG + chr3_1:78708782-78708801 Msa0378000:three_prime_UTR 20.0%
!!! TTTGAGTTTTTTTTTTTCCA+AGG - chr3_1:78708868-78708887 None:intergenic 20.0%
!! AAAAAAAAACTCAAAGTAAG+GGG + chr3_1:78708873-78708892 Msa0378000:three_prime_UTR 20.0%
!! AGAAATAAACCTTGTAGTTT+TGG - chr3_1:78704886-78704905 None:intergenic 25.0%
!!! TTTTTTCAATGCTAATTCAC+TGG + chr3_1:78705253-78705272 Msa0378000:intron 25.0%
! GTACTTTGGTATGAAAAAAA+AGG + chr3_1:78705673-78705692 Msa0378000:intron 25.0%
! GTTTGCTTGCAAAATAAATA+AGG - chr3_1:78706116-78706135 None:intergenic 25.0%
! TTTCCCTAATAGTTTAAAAG+GGG + chr3_1:78706369-78706388 Msa0378000:intron 25.0%
!! TAATGGAGACTTAAGATTTT+TGG + chr3_1:78706398-78706417 Msa0378000:intron 25.0%
! AAAAAAAAAATGGGGACTTA+AGG + chr3_1:78706432-78706451 Msa0378000:intron 25.0%
!! AATGGAAACTATTTGTTGAT+CGG + chr3_1:78706476-78706495 Msa0378000:intron 25.0%
!!! CTTTTCACACTTACTTTTTA+CGG + chr3_1:78706533-78706552 Msa0378000:intron 25.0%
!! ACATTGAAAACAGCTTTTTA+CGG - chr3_1:78706584-78706603 None:intergenic 25.0%
!! AATGTTTTCTTAAATCCAAC+AGG + chr3_1:78706675-78706694 Msa0378000:intron 25.0%
! AGTTGTATGATAAAAATTGG+TGG - chr3_1:78707167-78707186 None:intergenic 25.0%
! TATAACTCACACATTTGTTT+CGG - chr3_1:78707404-78707423 None:intergenic 25.0%
! AATAAAGGTTGAAGCTATAA+GGG - chr3_1:78707862-78707881 None:intergenic 25.0%
! AAATAAAGGTTGAAGCTATA+AGG - chr3_1:78707863-78707882 None:intergenic 25.0%
!!! GTTTTGAGAGATGAAAATAA+AGG - chr3_1:78707877-78707896 None:intergenic 25.0%
! ACAAGTTTCAATTCATCATT+AGG - chr3_1:78707912-78707931 None:intergenic 25.0%
!! ATTTCAAGATCTCAATTTTC+AGG - chr3_1:78708202-78708221 None:intergenic 25.0%
! AAACATATATCAGTAAGTGT+TGG - chr3_1:78708520-78708539 None:intergenic 25.0%
!! TTTTATAACACCAACCTTAA+AGG - chr3_1:78708551-78708570 None:intergenic 25.0%
! AAGAATAATTACCCTTTACA+AGG - chr3_1:78708990-78709009 None:intergenic 25.0%
! AAATAGCTTTTGTGTCTGTT+TGG - chr3_1:78704726-78704745 None:intergenic 30.0%
ATAGAATAGGAGAAAGAAGA+GGG + chr3_1:78704786-78704805 Msa0378000:five_prime_UTR 30.0%
!!! ATAAACCTTGTAGTTTTGGT+GGG - chr3_1:78704882-78704901 None:intergenic 30.0%
!!! AATAAACCTTGTAGTTTTGG+TGG - chr3_1:78704883-78704902 None:intergenic 30.0%
AAAAAAAGGAACCTGATGAT+CGG - chr3_1:78705238-78705257 None:intergenic 30.0%
!!! TACAACAACAAGTTTTAGAG+AGG + chr3_1:78705313-78705332 Msa0378000:intron 30.0%
!!! ACAACAACAAGTTTTAGAGA+GGG + chr3_1:78705314-78705333 Msa0378000:intron 30.0%
!! ACATGGCTCTAAATTTGATA+AGG - chr3_1:78705342-78705361 None:intergenic 30.0%
ACATTTAAGTGACACATGAT+TGG - chr3_1:78705467-78705486 None:intergenic 30.0%
! TTTTTATGGGATTTTCGTTC+TGG + chr3_1:78705712-78705731 Msa0378000:intron 30.0%
! TTTTATGGGATTTTCGTTCT+GGG + chr3_1:78705713-78705732 Msa0378000:intron 30.0%
GGAGGGACATTAAAATTTAA+AGG - chr3_1:78705771-78705790 None:intergenic 30.0%
! TATGTCCTTTTTCCAATTAG+AGG - chr3_1:78705987-78706006 None:intergenic 30.0%
GTTTCCTAAACTACTTAAGA+GGG - chr3_1:78705896-78705915 None:intergenic 30.0%
AGTTTCCTAAACTACTTAAG+AGG - chr3_1:78705897-78705916 None:intergenic 30.0%
ACACCTCTAAATTACTTAAG+AGG + chr3_1:78705921-78705940 Msa0378000:intron 30.0%
CACCTCTAAATTACTTAAGA+GGG + chr3_1:78705922-78705941 Msa0378000:intron 30.0%
! TATGTCCTTTTTCCAATTAG+AGG + chr3_1:78705987-78706006 Msa0378000:intron 30.0%
! ATGTCCTTTTTCCAATTAGA+GGG + chr3_1:78705988-78706007 Msa0378000:intron 30.0%
AATAAATAAGGCATGTGGAA+AGG - chr3_1:78706104-78706123 None:intergenic 30.0%
TGCAAAATAAATAAGGCATG+TGG - chr3_1:78706109-78706128 None:intergenic 30.0%
! TTCCACAGTTTTTATTGACA+TGG + chr3_1:78706168-78706187 Msa0378000:intron 30.0%
!! CAAATCTCTAGAATGATGAT+CGG - chr3_1:78706228-78706247 None:intergenic 30.0%
! AGACCCCTTTTAAACTATTA+GGG - chr3_1:78706375-78706394 None:intergenic 30.0%
! AAGACCCCTTTTAAACTATT+AGG - chr3_1:78706376-78706395 None:intergenic 30.0%
!! TTTAAAAGGGGTCTTGTTAA+TGG + chr3_1:78706381-78706400 Msa0378000:intron 30.0%
! GACACTTTTGCAAATATTAG+CGG + chr3_1:78706644-78706663 Msa0378000:intron 30.0%
GTATCAACTATTGATATGCT+GGG - chr3_1:78706776-78706795 None:intergenic 30.0%
TGTATCAACTATTGATATGC+TGG - chr3_1:78706777-78706796 None:intergenic 30.0%
! AGCATATCAATAGTTGATAC+AGG + chr3_1:78706776-78706795 Msa0378000:intron 30.0%
! GCATATCAATAGTTGATACA+GGG + chr3_1:78706777-78706796 Msa0378000:intron 30.0%
GAATTTAGAAATGTTAGTGG+AGG + chr3_1:78707820-78707839 Msa0378000:intron 30.0%
GTTTCAATTCATCATTAGGA+GGG - chr3_1:78707908-78707927 None:intergenic 30.0%
AGTTTCAATTCATCATTAGG+AGG - chr3_1:78707909-78707928 None:intergenic 30.0%
ATCAAAATGAAATGAGTTGC+TGG - chr3_1:78707952-78707971 None:intergenic 30.0%
GCAATTCAGGAAAAAATTAC+TGG + chr3_1:78708226-78708245 Msa0378000:intron 30.0%
TAATGTCAGATGCAGATAAA+AGG - chr3_1:78708321-78708340 None:intergenic 30.0%
TTTCTTACATCTGAATATGC+AGG + chr3_1:78708393-78708412 Msa0378000:intron 30.0%
! ATGTTTTGCACTTTCCTTTA+AGG + chr3_1:78708534-78708553 Msa0378000:intron 30.0%
!! TTGGTGTTATAAAAGCTGTT+AGG + chr3_1:78708557-78708576 Msa0378000:CDS 30.0%
ACTAAACTCACATGATTGAA+AGG + chr3_1:78708812-78708831 Msa0378000:three_prime_UTR 30.0%
! TCTCATTGTATTTTTCTCCT+TGG + chr3_1:78708848-78708867 Msa0378000:three_prime_UTR 30.0%
! TAGTTTGGATGGAGAAATTT+TGG - chr3_1:78708945-78708964 None:intergenic 30.0%
GATAGAATAGGAGAAAGAAG+AGG + chr3_1:78704785-78704804 Msa0378000:five_prime_UTR 35.0%
CTCAACCAGTTTGTGTATTT+GGG + chr3_1:78704953-78704972 Msa0378000:intron 35.0%
TCAACCAGTTTGTGTATTTG+GGG + chr3_1:78704954-78704973 Msa0378000:intron 35.0%
! TGTATTTGGGGGATTTTTCA+GGG + chr3_1:78704966-78704985 Msa0378000:intron 35.0%
! ATCAACGCTCTTGAAGATTT+TGG + chr3_1:78705143-78705162 Msa0378000:CDS 35.0%
ACATATACAGTTCCTGAAGT+TGG - chr3_1:78705183-78705202 None:intergenic 35.0%
TTCAGGAACTGTATATGTGA+AGG + chr3_1:78705185-78705204 Msa0378000:CDS 35.0%
AAAAAAGGAACCTGATGATC+GGG - chr3_1:78705237-78705256 None:intergenic 35.0%
AGAGCCATGTTAAGTTAGAA+AGG + chr3_1:78705352-78705371 Msa0378000:intron 35.0%
GAGCCATGTTAAGTTAGAAA+GGG + chr3_1:78705353-78705372 Msa0378000:intron 35.0%
!! GTGTCACTTAAATGTAGTAG+TGG + chr3_1:78705472-78705491 Msa0378000:intron 35.0%
TCACTTAAATGTAGTAGTGG+TGG + chr3_1:78705475-78705494 Msa0378000:intron 35.0%
ACTACTTAAGAGCCTCTAAT+TGG + chr3_1:78705816-78705835 Msa0378000:intron 35.0%
AAGAGCCTCTAATTGGAAAA+AGG + chr3_1:78705823-78705842 Msa0378000:intron 35.0%
TTCTCCCTCTTAAGTAGTTT+AGG + chr3_1:78705889-78705908 Msa0378000:intron 35.0%
CTCCCTCTTAAGTAATTTAG+AGG - chr3_1:78705927-78705946 None:intergenic 35.0%
AACAGCTTAATTGTAGGTTG+CGG - chr3_1:78706055-78706074 None:intergenic 35.0%
AGCTTGAACAGCTTAATTGT+AGG - chr3_1:78706061-78706080 None:intergenic 35.0%
TACAATTAAGCTGTTCAAGC+TGG + chr3_1:78706060-78706079 Msa0378000:intron 35.0%
TGACAACTATGATAACAGCA+GGG - chr3_1:78706146-78706165 None:intergenic 35.0%
GATACTAGTTGTAGTCAGTT+CGG - chr3_1:78706206-78706225 None:intergenic 35.0%
! AATGCCACTTCTTACACTTT+GGG - chr3_1:78706317-78706336 None:intergenic 35.0%
!!! TGTTTTCTGGTTAACAGTGA+TGG + chr3_1:78706706-78706725 Msa0378000:intron 35.0%
AATTTGGAGAAGAACTGACA+TGG - chr3_1:78706851-78706870 None:intergenic 35.0%
! AATAGTGTTGCATTTGTTGC+AGG + chr3_1:78707228-78707247 Msa0378000:intron 35.0%
GTAGATTCTGATGTTGCATT+TGG + chr3_1:78707265-78707284 Msa0378000:CDS 35.0%
TGGTTTATCTGACTACATGA+AGG + chr3_1:78707354-78707373 Msa0378000:CDS 35.0%
!! CTGACTACATGAAGGTATTA+TGG + chr3_1:78707362-78707381 Msa0378000:intron 35.0%
CCATGATCACAAGAAAATGA+AGG - chr3_1:78707616-78707635 None:intergenic 35.0%
! CCTTCATTTTCTTGTGATCA+TGG + chr3_1:78707613-78707632 Msa0378000:intron 35.0%
ATTCATCATTAGGAGGGTTA+AGG - chr3_1:78707902-78707921 None:intergenic 35.0%
TCTTGAAATTGCAGCAATTC+AGG + chr3_1:78708213-78708232 Msa0378000:intron 35.0%
!! TTTGCACTTTCCTTTAAGGT+TGG + chr3_1:78708538-78708557 Msa0378000:intron 35.0%
AAAAGCTGTTAGGAACTGTT+TGG + chr3_1:78708567-78708586 Msa0378000:CDS 35.0%
CCATAATGCTGTAACTTCTT+CGG - chr3_1:78708599-78708618 None:intergenic 35.0%
CGAAGAAGTTACAGCATTAT+GGG + chr3_1:78708597-78708616 Msa0378000:CDS 35.0%
GTTAATATAGGCAGATTGTC+TGG - chr3_1:78708731-78708750 None:intergenic 35.0%
TTTGGACAGGAAAACAAAGA+GGG - chr3_1:78708927-78708946 None:intergenic 35.0%
! TTTTGGACAGGAAAACAAAG+AGG - chr3_1:78708928-78708947 None:intergenic 35.0%
AAAGTTTCGCGCGATAGAAT+AGG + chr3_1:78704773-78704792 Msa0378000:five_prime_UTR 40.0%
TAGGAGCAACAAGATGATGA+GGG - chr3_1:78704845-78704864 None:intergenic 40.0%
ATAGGAGCAACAAGATGATG+AGG - chr3_1:78704846-78704865 None:intergenic 40.0%
!! TTTTGGTGGGAAGTGTAGAA+TGG - chr3_1:78704869-78704888 None:intergenic 40.0%
GCTCAACCAGTTTGTGTATT+TGG + chr3_1:78704952-78704971 Msa0378000:intron 40.0%
CAACCAGTTTGTGTATTTGG+GGG + chr3_1:78704955-78704974 Msa0378000:intron 40.0%
AATCCCCCAAATACACAAAC+TGG - chr3_1:78704961-78704980 None:intergenic 40.0%
! GTGTATTTGGGGGATTTTTC+AGG + chr3_1:78704965-78704984 Msa0378000:intron 40.0%
!! GTATTTGGGGGATTTTTCAG+GGG + chr3_1:78704967-78704986 Msa0378000:intron 40.0%
GTGGATGGTATTGCAATTGA+AGG + chr3_1:78704997-78705016 Msa0378000:CDS 40.0%
!! CACATCCTTAGTTTGTCTTG+CGG - chr3_1:78705046-78705065 None:intergenic 40.0%
! GCATTCCTTCTGGACAATTT+TGG + chr3_1:78705091-78705110 Msa0378000:CDS 40.0%
AGCATCCAAAATTGTCCAGA+AGG - chr3_1:78705099-78705118 None:intergenic 40.0%
! GGACAATTTTGGATGCTTCT+TGG + chr3_1:78705102-78705121 Msa0378000:CDS 40.0%
!! GTTGATTTTCCACAGCCATT+GGG - chr3_1:78705129-78705148 None:intergenic 40.0%
TTTCCAAAATCCCGATCATC+AGG + chr3_1:78705224-78705243 Msa0378000:CDS 40.0%
CCTCCCTTTCTAACTTAACA+TGG - chr3_1:78705359-78705378 None:intergenic 40.0%
CCATGTTAAGTTAGAAAGGG+AGG + chr3_1:78705356-78705375 Msa0378000:intron 40.0%
CTTAAATGTAGTAGTGGTGG+TGG + chr3_1:78705478-78705497 Msa0378000:intron 40.0%
! TCGTCTGAGATGTAGTACTT+TGG + chr3_1:78705659-78705678 Msa0378000:intron 40.0%
AGGAGATATACAAAAGGGAC+AGG - chr3_1:78705751-78705770 None:intergenic 40.0%
!! GGTGCTACTTTGTAATTGGA+GGG - chr3_1:78705788-78705807 None:intergenic 40.0%
!! TAGGGGTGCTACTTTGTAAT+TGG - chr3_1:78705792-78705811 None:intergenic 40.0%
AATTACAAAGTAGCACCCCT+AGG + chr3_1:78705791-78705810 Msa0378000:intron 40.0%
GCTCTTAAGTAGTTTCCTAG+GGG - chr3_1:78705809-78705828 None:intergenic 40.0%
GGCTCTTAAGTAGTTTCCTA+GGG - chr3_1:78705810-78705829 None:intergenic 40.0%
AGGCTCTTAAGTAGTTTCCT+AGG - chr3_1:78705811-78705830 None:intergenic 40.0%
CTGTCCCTCTAATTGGAAAA+AGG - chr3_1:78705995-78706014 None:intergenic 40.0%
TGTATGTCTGTCCCTCTAAT+TGG - chr3_1:78706002-78706021 None:intergenic 40.0%
! ATTGTAGGTTGCGGTGTTAA+GGG - chr3_1:78706046-78706065 None:intergenic 40.0%
! AATTGTAGGTTGCGGTGTTA+AGG - chr3_1:78706047-78706066 None:intergenic 40.0%
AATAAGGCATGTGGAAAGGT+TGG - chr3_1:78706100-78706119 None:intergenic 40.0%
CTGACAACTATGATAACAGC+AGG - chr3_1:78706147-78706166 None:intergenic 40.0%
GGCCATGTCAATAAAAACTG+TGG - chr3_1:78706173-78706192 None:intergenic 40.0%
!! TCTTACACTTTGGGATGCAA+AGG - chr3_1:78706308-78706327 None:intergenic 40.0%
! CAATGCCACTTCTTACACTT+TGG - chr3_1:78706318-78706337 None:intergenic 40.0%
AAATGGGGACTTAAGGTCAT+TGG + chr3_1:78706439-78706458 Msa0378000:intron 40.0%
!! GGACTTAAGGTCATTGGTTT+AGG + chr3_1:78706445-78706464 Msa0378000:intron 40.0%
!!! TCACACTTACTTTTTACGGC+AGG + chr3_1:78706537-78706556 Msa0378000:intron 40.0%
! TGAAAACAGCTTTTTACGGC+AGG - chr3_1:78706580-78706599 None:intergenic 40.0%
GAAAACAGAATCGAACCTGT+TGG - chr3_1:78706693-78706712 None:intergenic 40.0%
! ACAGGTTCGATTCTGTTTTC+TGG + chr3_1:78706693-78706712 Msa0378000:intron 40.0%
TCTGGTTAACAGTGATGGTT+AGG + chr3_1:78706711-78706730 Msa0378000:intron 40.0%
! GGTTTGCTTATTGCATAGTC+AGG + chr3_1:78706732-78706751 Msa0378000:intron 40.0%
TAGAAGTTTCATCGTCGATG+AGG + chr3_1:78706958-78706977 Msa0378000:intron 40.0%
TATCTCGATGTCTACAGTTC+AGG + chr3_1:78707053-78707072 Msa0378000:intron 40.0%
GCAACATCAGAATCTACTGT+AGG - chr3_1:78707262-78707281 None:intergenic 40.0%
TCTGATGTTGCATTTGGTCT+TGG + chr3_1:78707271-78707290 Msa0378000:CDS 40.0%
!! CACATTTGTTTCGGTGTTCA+AGG - chr3_1:78707395-78707414 None:intergenic 40.0%
AGCTTGTAAGGTTCTGTTGT+TGG + chr3_1:78707528-78707547 Msa0378000:CDS 40.0%
ATTCCTAGATGAAACTGACC+AGG + chr3_1:78707564-78707583 Msa0378000:CDS 40.0%
ACCAGGTGATCTATAAAGTG+TGG + chr3_1:78707581-78707600 Msa0378000:intron 40.0%
ACCACACTTTATAGATCACC+TGG - chr3_1:78707585-78707604 None:intergenic 40.0%
TTGAAGCTATAAGGGATTGC+AGG - chr3_1:78707854-78707873 None:intergenic 40.0%
CAGATGCAGATAAAAGGCAA+AGG - chr3_1:78708315-78708334 None:intergenic 40.0%
CCGAAGAAGTTACAGCATTA+TGG + chr3_1:78708596-78708615 Msa0378000:CDS 40.0%
!! CTCTAGTTCTTCCAAACGAT+GGG - chr3_1:78708626-78708645 None:intergenic 40.0%
!! ACTCTAGTTCTTCCAAACGA+TGG - chr3_1:78708627-78708646 None:intergenic 40.0%
GAAGAACTAGAGTATGCAGA+TGG + chr3_1:78708634-78708653 Msa0378000:CDS 40.0%
TTGGACAGGAAAACAAAGAG+GGG - chr3_1:78708926-78708945 None:intergenic 40.0%
! TGGATGGAGAAATTTTGGAC+AGG - chr3_1:78708940-78708959 None:intergenic 40.0%
AGGAGCAACAAGATGATGAG+GGG - chr3_1:78704844-78704863 None:intergenic 45.0%
! GTGGGAAGTGTAGAATGGAT+AGG - chr3_1:78704864-78704883 None:intergenic 45.0%
CACTTCCCACCAAAACTACA+AGG + chr3_1:78704874-78704893 Msa0378000:CDS 45.0%
!!! ATTTTTCAGGGGCAAAAGCG+TGG + chr3_1:78704978-78704997 Msa0378000:intron 45.0%
GTTCACCGCAAGACAAACTA+AGG + chr3_1:78705038-78705057 Msa0378000:CDS 45.0%
TGCTCAATTCGCATTCCTTC+TGG + chr3_1:78705081-78705100 Msa0378000:CDS 45.0%
!!! CGTTGATTTTCCACAGCCAT+TGG - chr3_1:78705130-78705149 None:intergenic 45.0%
!! ACGCTCTTGAAGATTTTGGC+TGG + chr3_1:78705147-78705166 Msa0378000:CDS 45.0%
GGTCTATTCACTCCAACTTC+AGG + chr3_1:78705168-78705187 Msa0378000:CDS 45.0%
! GAACCTGATGATCGGGATTT+TGG - chr3_1:78705230-78705249 None:intergenic 45.0%
!! AAATGTAGTAGTGGTGGTGG+TGG + chr3_1:78705481-78705500 Msa0378000:intron 45.0%
!! GGGTGCTACTTTGTAATTGG+AGG - chr3_1:78705789-78705808 None:intergenic 45.0%
AGAGGGACAGACATACAAAG+AGG + chr3_1:78706005-78706024 Msa0378000:intron 45.0%
TTGTAGTCAGTTCGGACTCA+GGG - chr3_1:78706198-78706217 None:intergenic 45.0%
GCATCCCAAAGTGTAAGAAG+TGG + chr3_1:78706310-78706329 Msa0378000:intron 45.0%
! ATACAGGGTGCCTTGTGAAA+GGG + chr3_1:78706792-78706811 Msa0378000:intron 45.0%
! AGTGTTGCATTTGTTGCAGG+TGG + chr3_1:78707231-78707250 Msa0378000:intron 45.0%
TGACGATGAAGTCAGATCCA+GGG + chr3_1:78707309-78707328 Msa0378000:CDS 45.0%
TCACGAGCTTTACATGCTGT+TGG + chr3_1:78707334-78707353 Msa0378000:CDS 45.0%
AGATCTGTCCAAACTCTGAG+TGG + chr3_1:78707463-78707482 Msa0378000:CDS 45.0%
TGCTCTAGCAGAAGCTTGTA+AGG + chr3_1:78707516-78707535 Msa0378000:CDS 45.0%
TCACCTGGTCAGTTTCATCT+AGG - chr3_1:78707570-78707589 None:intergenic 45.0%
CATCATTAGGAGGGTTAAGG+TGG - chr3_1:78707899-78707918 None:intergenic 45.0%
! TGCTGGCTACACAAAGTTCA+AGG - chr3_1:78707935-78707954 None:intergenic 45.0%
ATTATGGGTCACCCATCGTT+TGG + chr3_1:78708612-78708631 Msa0378000:CDS 45.0%
TGCAGATGGTGCAATCTACA+TGG + chr3_1:78708648-78708667 Msa0378000:CDS 45.0%
AGATGGTGCAATCTACATGG+AGG + chr3_1:78708651-78708670 Msa0378000:CDS 45.0%
AATCTACATGGAGGATGGCA+AGG + chr3_1:78708660-78708679 Msa0378000:CDS 45.0%
AAGGAGATGCAGCATGCATA+AGG + chr3_1:78708692-78708711 Msa0378000:CDS 45.0%
TGGACAGGAAAACAAAGAGG+GGG - chr3_1:78708925-78708944 None:intergenic 45.0%
CATCCAAACTATGAGCCACA+GGG + chr3_1:78708954-78708973 Msa0378000:three_prime_UTR 45.0%
GACGGGCAATACCTTGTAAA+GGG + chr3_1:78708976-78708995 Msa0378000:three_prime_UTR 45.0%
TGGATGCTTCTTGGACCCAA+TGG + chr3_1:78705111-78705130 Msa0378000:CDS 50.0%
!! AGCTGTTCAAGCTGGCTTTG+AGG + chr3_1:78706068-78706087 Msa0378000:intron 50.0%
GTTGTAGTCAGTTCGGACTC+AGG - chr3_1:78706199-78706218 None:intergenic 50.0%
!!! CGGCAGGTCACTTTTTAACC+AGG + chr3_1:78706553-78706572 Msa0378000:intron 50.0%
! GATACAGGGTGCCTTGTGAA+AGG + chr3_1:78706791-78706810 Msa0378000:intron 50.0%
CCTCTCTTTGCCCTTTCACA+AGG - chr3_1:78706805-78706824 None:intergenic 50.0%
CCTTGTGAAAGGGCAAAGAG+AGG + chr3_1:78706802-78706821 Msa0378000:intron 50.0%
CTGACGATGAAGTCAGATCC+AGG + chr3_1:78707308-78707327 Msa0378000:CDS 50.0%
ATGTAAAGCTCGTGACACCC+TGG - chr3_1:78707329-78707348 None:intergenic 50.0%
TCTGTCCAAACTCTGAGTGG+TGG + chr3_1:78707466-78707485 Msa0378000:CDS 50.0%
TCTGACCACCACTCAGAGTT+TGG - chr3_1:78707474-78707493 None:intergenic 50.0%
GGTGCAATCTACATGGAGGA+TGG + chr3_1:78708655-78708674 Msa0378000:CDS 50.0%
GATGGCAAGGTAGTCATGCA+AGG + chr3_1:78708673-78708692 Msa0378000:CDS 50.0%
GGACAGGAAAACAAAGAGGG+GGG - chr3_1:78708924-78708943 None:intergenic 50.0%
CCTGTGGCTCATAGTTTGGA+TGG - chr3_1:78708956-78708975 None:intergenic 50.0%
CCATCCAAACTATGAGCCAC+AGG + chr3_1:78708953-78708972 Msa0378000:three_prime_UTR 50.0%
CAAACTATGAGCCACAGGGA+CGG + chr3_1:78708958-78708977 Msa0378000:three_prime_UTR 50.0%
AAACTATGAGCCACAGGGAC+GGG + chr3_1:78708959-78708978 Msa0378000:three_prime_UTR 50.0%
GGACGGGCAATACCTTGTAA+AGG + chr3_1:78708975-78708994 Msa0378000:three_prime_UTR 50.0%
! TTCAGGGGCAAAAGCGTGGA+TGG + chr3_1:78704982-78705001 Msa0378000:intron 55.0%
CTTCTTGGACCCAATGGCTG+TGG + chr3_1:78705117-78705136 Msa0378000:CDS 55.0%
! CAGCTTTTTACGGCAGGTCC+TGG - chr3_1:78706574-78706593 None:intergenic 55.0%
TGAGTGGTGGTCAGAAGCAG+CGG + chr3_1:78707479-78707498 Msa0378000:CDS 55.0%
!! AAGCAGCGGGTTGCTATTGC+TGG + chr3_1:78707493-78707512 Msa0378000:CDS 55.0%
CGTCCCTGTGGCTCATAGTT+TGG - chr3_1:78708960-78708979 None:intergenic 55.0%
AGTCAGTTCGGACTCAGGGC+TGG - chr3_1:78706194-78706213 None:intergenic 60.0%
GAGTGGTGGTCAGAAGCAGC+GGG + chr3_1:78707480-78707499 Msa0378000:CDS 60.0%
! AGATAACAGTGCCGCTGCGC+TGG + chr3_1:78708351-78708370 Msa0378000:intron 60.0%
! GATAACAGTGCCGCTGCGCT+GGG + chr3_1:78708352-78708371 Msa0378000:intron 60.0%
! ATAACAGTGCCGCTGCGCTG+GGG + chr3_1:78708353-78708372 Msa0378000:intron 60.0%
! TAAGCATTGCCCCAGCGCAG+CGG - chr3_1:78708365-78708384 None:intergenic 60.0%
!! CAAGGTATTGCCCGTCCCTG+TGG - chr3_1:78708972-78708991 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78704646 78709025 78704646 ID=Msa0378000;Name=Msa0378000
chr3_1 mRNA 78704646 78709025 78704646 ID=Msa0378000-mRNA-1;Parent=Msa0378000;Name=Msa0378000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=170|1|1|1|1|1|5|260|265
chr3_1 exon 78704646 78704895 78704646 ID=Msa0378000-mRNA-1:exon:19044;Parent=Msa0378000-mRNA-1
chr3_1 exon 78704987 78705245 78704987 ID=Msa0378000-mRNA-1:exon:19045;Parent=Msa0378000-mRNA-1
chr3_1 exon 78707250 78707375 78707250 ID=Msa0378000-mRNA-1:exon:19046;Parent=Msa0378000-mRNA-1
chr3_1 exon 78707463 78707585 78707463 ID=Msa0378000-mRNA-1:exon:19047;Parent=Msa0378000-mRNA-1
chr3_1 exon 78708556 78709025 78708556 ID=Msa0378000-mRNA-1:exon:19048;Parent=Msa0378000-mRNA-1
chr3_1 five_prime_UTR 78704646 78704815 78704646 ID=Msa0378000-mRNA-1:five_prime_utr;Parent=Msa0378000-mRNA-1
chr3_1 CDS 78704816 78704895 78704816 ID=Msa0378000-mRNA-1:cds;Parent=Msa0378000-mRNA-1
chr3_1 CDS 78704987 78705245 78704987 ID=Msa0378000-mRNA-1:cds;Parent=Msa0378000-mRNA-1
chr3_1 CDS 78707250 78707375 78707250 ID=Msa0378000-mRNA-1:cds;Parent=Msa0378000-mRNA-1
chr3_1 CDS 78707463 78707585 78707463 ID=Msa0378000-mRNA-1:cds;Parent=Msa0378000-mRNA-1
chr3_1 CDS 78708556 78708765 78708556 ID=Msa0378000-mRNA-1:cds;Parent=Msa0378000-mRNA-1
chr3_1 three_prime_UTR 78708766 78709025 78708766 ID=Msa0378000-mRNA-1:three_prime_utr;Parent=Msa0378000-mRNA-1
Gene Sequence

>Msa0378000

ATGAATCTCTCTTCTCTCAGTTTTACCCCTCATCATCTTGTTGCTCCTATCCATTCTACACTTCCCACCAAAACTACAAGGGGCAAAAGCGTGGATGGTATTGCAATTGAAGGTCGTAATCTGAATTTCTCGTTCACCGCAAGACAAACTAAGGATGTGCAAGTTCTTAGAGATTGCTCAATTCGCATTCCTTCTGGACAATTTTGGATGCTTCTTGGACCCAATGGCTGTGGAAAATCAACGCTCTTGAAGATTTTGGCTGGTCTATTCACTCCAACTTCAGGAACTGTATATGTGAAGGAGCCTAAAAGTTTTGTTTTCCAAAATCCCGATCATCAGGTGGTGATGCCTACAGTAGATTCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTAGCTGACGATGAAGTCAGATCCAGGGTGTCACGAGCTTTACATGCTGTTGGTTTATCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGCGGGTTGCTATTGCTGGTGCTCTAGCAGAAGCTTGTAAGGTTCTGTTGTTGGATGAGCTCACAACATTCCTAGATGAAACTGACCAGGTTGGTGTTATAAAAGCTGTTAGGAACTGTTTGGATACTTCCGAAGAAGTTACAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCAATCTACATGGAGGATGGCAAGGTAGTCATGCAAGGAGATGCAGCATGCATAAGGAGTTTTATTGAAGCCAGACAATCTGCCTATATTAACCAGATTAATTCTTAA
Protein sequence

>Msa0378000

MNLSSLSFTPHHLVAPIHSTLPTKTTRGKSVDGIAIEGRNLNFSFTARQTKDVQVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAGLFTPTSGTVYVKEPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLADDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNCLDTSEEVTALWVTHRLEELEYADGAIYMEDGKVVMQGDAACIRSFIEARQSAYINQINS*