Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263230 | AES92699.2 | 89.355 | 620 | 19 | 1 | 1 | 573 | 1 | 620 | 0.0 | 1115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263230 | sp|Q7TPD0|INT3_MOUSE | 35.922 | 412 | 259 | 4 | 43 | 454 | 82 | 488 | 8.16e-88 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263230 | G7JKH2 | 89.355 | 620 | 19 | 1 | 1 | 573 | 1 | 620 | 0.0 | 1115 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1263230 | 0.822637 | 2.129079e-53 | -8.615850e-47 |
| Msa0054440 | Msa1263230 | 0.803586 | 3.248541e-49 | -8.615850e-47 |
| Msa0054480 | Msa1263230 | 0.843071 | 1.755728e-58 | -8.615850e-47 |
| Msa0061080 | Msa1263230 | 0.814256 | 1.689923e-51 | -8.615850e-47 |
| Msa0063530 | Msa1263230 | 0.803293 | 3.735780e-49 | -8.615850e-47 |
| Msa0078900 | Msa1263230 | 0.804998 | 1.650087e-49 | -8.615850e-47 |
| Msa0084380 | Msa1263230 | 0.811201 | 7.880734e-51 | -8.615850e-47 |
| Msa0610430 | Msa1263230 | 0.822565 | 2.213114e-53 | -8.615850e-47 |
| Msa0617640 | Msa1263230 | 0.854659 | 1.062004e-61 | -8.615850e-47 |
| Msa0625720 | Msa1263230 | 0.845246 | 4.578489e-59 | -8.615850e-47 |
| Msa0632740 | Msa1263230 | 0.801939 | 7.105737e-49 | -8.615850e-47 |
| Msa0657610 | Msa1263230 | 0.810429 | 1.157625e-50 | -8.615850e-47 |
| Msa0663390 | Msa1263230 | 0.829469 | 5.058727e-55 | -8.615850e-47 |
| Msa0669440 | Msa1263230 | 0.802061 | 6.707829e-49 | -8.615850e-47 |
| Msa0673460 | Msa1263230 | 0.817104 | 3.920942e-52 | -8.615850e-47 |
| Msa0689260 | Msa1263230 | 0.806712 | 7.200895e-50 | -8.615850e-47 |
| Msa0692830 | Msa1263230 | 0.824911 | 6.245978e-54 | -8.615850e-47 |
| Msa0692950 | Msa1263230 | 0.818186 | 2.235812e-52 | -8.615850e-47 |
| Msa0711780 | Msa1263230 | 0.812711 | 3.694340e-51 | -8.615850e-47 |
| Msa0715700 | Msa1263230 | 0.836041 | 1.180371e-56 | -8.615850e-47 |
| Msa0716840 | Msa1263230 | 0.803955 | 2.722576e-49 | -8.615850e-47 |
| Msa0731940 | Msa1263230 | 0.808464 | 3.058137e-50 | -8.615850e-47 |
| Msa0745790 | Msa1263230 | 0.807509 | 4.883294e-50 | -8.615850e-47 |
| Msa0793800 | Msa1263230 | 0.817686 | 2.899555e-52 | -8.615850e-47 |
| Msa0794670 | Msa1263230 | 0.815036 | 1.135860e-51 | -8.615850e-47 |
| Msa0817460 | Msa1263230 | 0.807264 | 5.501961e-50 | -8.615850e-47 |
| Msa0820850 | Msa1263230 | 0.804196 | 2.426128e-49 | -8.615850e-47 |
| Msa0150820 | Msa1263230 | 0.818658 | 1.747274e-52 | -8.615850e-47 |
| Msa0160550 | Msa1263230 | 0.803710 | 3.061103e-49 | -8.615850e-47 |
| Msa0165210 | Msa1263230 | 0.801950 | 7.070487e-49 | -8.615850e-47 |
| Msa0168230 | Msa1263230 | 0.802836 | 4.643952e-49 | -8.615850e-47 |
| Msa0171540 | Msa1263230 | 0.804597 | 2.001832e-49 | -8.615850e-47 |
| Msa0178930 | Msa1263230 | 0.805780 | 1.131699e-49 | -8.615850e-47 |
| Msa0187120 | Msa1263230 | 0.814062 | 1.865771e-51 | -8.615850e-47 |
| Msa0187250 | Msa1263230 | 0.813765 | 2.168415e-51 | -8.615850e-47 |
| Msa0212990 | Msa1263230 | 0.801929 | 7.138667e-49 | -8.615850e-47 |
| Msa0222890 | Msa1263230 | 0.800612 | 1.328239e-48 | -8.615850e-47 |
| Msa0223010 | Msa1263230 | 0.821934 | 3.100461e-53 | -8.615850e-47 |
| Msa0228070 | Msa1263230 | 0.810436 | 1.153634e-50 | -8.615850e-47 |
| Msa1245930 | Msa1263230 | 0.827649 | 1.392118e-54 | -8.615850e-47 |
| Msa1259060 | Msa1263230 | 0.827558 | 1.464167e-54 | -8.615850e-47 |
| Msa1263230 | Msa1277660 | 0.817429 | 3.312775e-52 | -8.615850e-47 |
| Msa1263230 | Msa1287460 | 0.832804 | 7.669529e-56 | -8.615850e-47 |
| Msa1263230 | Msa1302640 | 0.883311 | 4.994051e-71 | -8.615850e-47 |
| Msa1263230 | Msa1305340 | 0.804848 | 1.773550e-49 | -8.615850e-47 |
| Msa1263230 | Msa1306920 | 0.809263 | 2.062636e-50 | -8.615850e-47 |
| Msa1263230 | Msa1313320 | 0.806687 | 7.289497e-50 | -8.615850e-47 |
| Msa1263230 | Msa1331000 | 0.800815 | 1.207382e-48 | -8.615850e-47 |
| Msa1263230 | Msa1345220 | 0.812368 | 4.390678e-51 | -8.615850e-47 |
| Msa1263230 | Msa1358250 | 0.804587 | 2.011007e-49 | -8.615850e-47 |
| Msa1263230 | Msa1359040 | 0.806454 | 8.162368e-50 | -8.615850e-47 |
| Msa1263230 | Msa1370070 | -0.828416 | 9.099566e-55 | -8.615850e-47 |
| Msa1263230 | Msa1373030 | 0.812407 | 4.305496e-51 | -8.615850e-47 |
| Msa1263230 | Msa1389800 | 0.803692 | 3.088032e-49 | -8.615850e-47 |
| Msa1263230 | Msa1392780 | 0.823585 | 1.279880e-53 | -8.615850e-47 |
| Msa1263230 | Msa1400580 | 0.830060 | 3.632974e-55 | -8.615850e-47 |
| Msa1263230 | Msa1403340 | 0.814391 | 1.577763e-51 | -8.615850e-47 |
| Msa1263230 | Msa1411750 | 0.825410 | 4.758558e-54 | -8.615850e-47 |
| Msa1263230 | Msa1427230 | 0.829228 | 5.788136e-55 | -8.615850e-47 |
| Msa1263230 | Msa1460830 | 0.823352 | 1.450720e-53 | -8.615850e-47 |
| Msa1263230 | Msa1466540 | 0.834372 | 3.113633e-56 | -8.615850e-47 |
| Msa0393080 | Msa1263230 | 0.801009 | 1.102113e-48 | -8.615850e-47 |
| Msa0402790 | Msa1263230 | 0.821755 | 3.410459e-53 | -8.615850e-47 |
| Msa0412840 | Msa1263230 | 0.808736 | 2.674679e-50 | -8.615850e-47 |
| Msa0442200 | Msa1263230 | 0.808580 | 2.887927e-50 | -8.615850e-47 |
| Msa0453640 | Msa1263230 | 0.804446 | 2.151960e-49 | -8.615850e-47 |
| Msa0467060 | Msa1263230 | 0.803528 | 3.339336e-49 | -8.615850e-47 |
| Msa0481530 | Msa1263230 | 0.835374 | 1.741781e-56 | -8.615850e-47 |
| Msa1003620 | Msa1263230 | 0.836209 | 1.070026e-56 | -8.615850e-47 |
| Msa1014540 | Msa1263230 | 0.813594 | 2.365280e-51 | -8.615850e-47 |
| Msa1046460 | Msa1263230 | 0.829639 | 4.598634e-55 | -8.615850e-47 |
| Msa1051200 | Msa1263230 | 0.811050 | 8.499587e-51 | -8.615850e-47 |
| Msa1075540 | Msa1263230 | 0.812589 | 3.928440e-51 | -8.615850e-47 |
| Msa1082500 | Msa1263230 | 0.814667 | 1.370627e-51 | -8.615850e-47 |
| Msa1088640 | Msa1263230 | 0.800382 | 1.479244e-48 | -8.615850e-47 |
| Msa1098400 | Msa1263230 | 0.801664 | 8.094371e-49 | -8.615850e-47 |
| Msa1098420 | Msa1263230 | 0.801418 | 9.090630e-49 | -8.615850e-47 |
| Msa0241470 | Msa1263230 | 0.811080 | 8.371618e-51 | -8.615850e-47 |
| Msa0271530 | Msa1263230 | 0.817163 | 3.801949e-52 | -8.615850e-47 |
| Msa0279220 | Msa1263230 | 0.828749 | 7.561024e-55 | -8.615850e-47 |
| Msa0279240 | Msa1263230 | 0.825525 | 4.471189e-54 | -8.615850e-47 |
| Msa0309770 | Msa1263230 | 0.800843 | 1.191654e-48 | -8.615850e-47 |
| Msa0318980 | Msa1263230 | 0.824759 | 6.783623e-54 | -8.615850e-47 |
| Msa0319170 | Msa1263230 | 0.829989 | 3.780741e-55 | -8.615850e-47 |
| Msa0339620 | Msa1263230 | 0.815619 | 8.424895e-52 | -8.615850e-47 |
| Msa0340450 | Msa1263230 | 0.803176 | 3.950580e-49 | -8.615850e-47 |
| Msa0344690 | Msa1263230 | -0.805835 | 1.101576e-49 | -8.615850e-47 |
| Msa0345970 | Msa1263230 | 0.808930 | 2.431780e-50 | -8.615850e-47 |
| Msa1119480 | Msa1263230 | 0.811700 | 6.139334e-51 | -8.615850e-47 |
| Msa1137570 | Msa1263230 | 0.801355 | 9.362413e-49 | -8.615850e-47 |
| Msa1160590 | Msa1263230 | 0.807359 | 5.253094e-50 | -8.615850e-47 |
| Msa1181250 | Msa1263230 | 0.808723 | 2.692474e-50 | -8.615850e-47 |
| Msa1181330 | Msa1263230 | 0.805935 | 1.049638e-49 | -8.615850e-47 |
| Msa1186950 | Msa1263230 | -0.815798 | 7.686747e-52 | -8.615850e-47 |
| Msa1208880 | Msa1263230 | 0.824106 | 9.659715e-54 | -8.615850e-47 |
| Msa0484780 | Msa1263230 | 0.800268 | 1.561062e-48 | -8.615850e-47 |
| Msa0529890 | Msa1263230 | 0.846801 | 1.728470e-59 | -8.615850e-47 |
| Msa0542090 | Msa1263230 | 0.812123 | 4.966500e-51 | -8.615850e-47 |
| Msa0542130 | Msa1263230 | 0.806416 | 8.313656e-50 | -8.615850e-47 |
| Msa0555020 | Msa1263230 | 0.817430 | 3.311741e-52 | -8.615850e-47 |
| Msa0585560 | Msa1263230 | 0.841707 | 4.037127e-58 | -8.615850e-47 |
| Msa0844490 | Msa1263230 | 0.803527 | 3.340967e-49 | -8.615850e-47 |
| Msa0861130 | Msa1263230 | 0.805968 | 1.033022e-49 | -8.615850e-47 |
| Msa0876810 | Msa1263230 | 0.804008 | 2.655053e-49 | -8.615850e-47 |
| Msa0909110 | Msa1263230 | 0.807787 | 4.262513e-50 | -8.615850e-47 |
| Msa0935410 | Msa1263230 | 0.802459 | 5.554647e-49 | -8.615850e-47 |
| Msa0947660 | Msa1263230 | 0.806696 | 7.258122e-50 | -8.615850e-47 |
| Msa0965360 | Msa1263230 | 0.801053 | 1.079291e-48 | -8.615850e-47 |
| Msa0974070 | Msa1263230 | 0.803677 | 3.109346e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263230 | MtrunA17_Chr4g0075581 | 97.240 | 471 | 13 | 0 | 1 | 471 | 1 | 471 | 0.0 | 932 |
| Msa1263230 | MtrunA17_Chr7g0269221 | 37.762 | 143 | 62 | 6 | 436 | 573 | 287 | 407 | 9.99e-16 | 80.1 |
| Msa1263230 | MtrunA17_Chr4g0067341 | 84.615 | 39 | 6 | 0 | 535 | 573 | 357 | 395 | 2.71e-15 | 78.6 |
| Msa1263230 | MtrunA17_Chr4g0061061 | 66.667 | 39 | 13 | 0 | 535 | 573 | 353 | 391 | 2.64e-11 | 65.9 |
| Msa1263230 | MtrunA17_Chr3g0091621 | 66.667 | 39 | 13 | 0 | 535 | 573 | 358 | 396 | 3.33e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1263230 | AT4G14590.1 | 56.798 | 456 | 171 | 3 | 11 | 465 | 16 | 446 | 1.10e-176 | 509 |
| Msa1263230 | AT3G62720.2 | 35.664 | 143 | 65 | 6 | 436 | 573 | 280 | 400 | 9.25e-15 | 77.4 |
| Msa1263230 | AT3G62720.1 | 35.664 | 143 | 65 | 6 | 436 | 573 | 280 | 400 | 9.25e-15 | 77.4 |
| Msa1263230 | AT4G02500.1 | 84.211 | 38 | 6 | 0 | 536 | 573 | 364 | 401 | 2.25e-14 | 76.3 |
Find 142 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGAAACATCAACTTATT+TGG | 0.070670 | 8_2:+66363665 | Msa1263230:CDS |
| TGTAAACCTTCTGGGAAATT+TGG | 0.134778 | 8_2:+66366594 | Msa1263230:CDS |
| CGCAATTGTGTCTCCATTTC+AGG | 0.135526 | 8_2:-66364177 | None:intergenic |
| TTTCATTTATGTTTGAAAAT+TGG | 0.160887 | 8_2:+66363985 | Msa1263230:CDS |
| TTTGCTTACTCATGTGAAAT+TGG | 0.188512 | 8_2:+66364203 | Msa1263230:CDS |
| ATTTCAGTGATGATAATTTA+TGG | 0.209364 | 8_2:+66363770 | Msa1263230:CDS |
| TTAAGGAGAATGGTGGTTTA+AGG | 0.243297 | 8_2:-66363459 | None:intergenic |
| GTAAACCTTCTGGGAAATTT+GGG | 0.248874 | 8_2:+66366595 | Msa1263230:CDS |
| TTCATTTATGTTTGAAAATT+GGG | 0.254201 | 8_2:+66363986 | Msa1263230:CDS |
| AGAAATTCTTTAGAGCTTTC+AGG | 0.254646 | 8_2:-66364753 | None:intergenic |
| TTTGAGAGTTGTAAACCTTC+TGG | 0.256570 | 8_2:+66366585 | Msa1263230:CDS |
| TTTATGGCTTTGTGAGAAAA+TGG | 0.288331 | 8_2:+66363786 | Msa1263230:CDS |
| CCTAAAGTATTAAAACTAGA+TGG | 0.289798 | 8_2:-66364087 | None:intergenic |
| CTGTCCTTAACTTTCCCTTT+TGG | 0.292299 | 8_2:-66366398 | None:intergenic |
| TTGAAATATCCTCCTGGTTT+TGG | 0.293611 | 8_2:+66366534 | Msa1263230:CDS |
| GTATGTGTTTCTTCGAGTTT+TGG | 0.298933 | 8_2:+66363876 | Msa1263230:CDS |
| TATTCGGTTGTTGCAGGATT+TGG | 0.298936 | 8_2:+66364017 | Msa1263230:CDS |
| GTTCCTAGATGGGCTGTTAT+TGG | 0.301065 | 8_2:+66364363 | Msa1263230:CDS |
| TTCCTGAATTTAAGTCTATA+TGG | 0.303051 | 8_2:+66364046 | Msa1263230:CDS |
| GAGGGAAAAGTGAGGTGTTT+TGG | 0.305748 | 8_2:+66366511 | Msa1263230:CDS |
| TGGCGTGTAAGTGTTTGATA+TGG | 0.312387 | 8_2:-66363564 | None:intergenic |
| CAGCTTCATGAGGTGCTGTC+AGG | 0.320098 | 8_2:-66363384 | None:intergenic |
| CATAAGGATATCATTGTTAA+AGG | 0.326625 | 8_2:+66364603 | Msa1263230:CDS |
| TGCTTCAAGCATCTCTCAAC+AGG | 0.330712 | 8_2:-66366624 | None:intergenic |
| TTGCTTACTCATGTGAAATT+GGG | 0.331574 | 8_2:+66364204 | Msa1263230:CDS |
| GGTGAAACATCAACTTATTT+GGG | 0.332157 | 8_2:+66363666 | Msa1263230:CDS |
| TGAATGTATTCATCGGGATT+TGG | 0.333951 | 8_2:-66363487 | None:intergenic |
| TCTTGTGGACAACTATGATA+TGG | 0.338106 | 8_2:+66364578 | Msa1263230:CDS |
| ATCATAAAACAAAGCCAGTT+TGG | 0.343070 | 8_2:-66364433 | None:intergenic |
| TAAGGCAAGGTTGAAGAGAT+TGG | 0.345643 | 8_2:-66363441 | None:intergenic |
| GTCTGTCACAGTTTATTTGT+TGG | 0.352141 | 8_2:+66366481 | Msa1263230:CDS |
| GTTTGAGTCTTTGAAGCGTT+TGG | 0.352357 | 8_2:+66363927 | Msa1263230:CDS |
| ATTGGATATTCTTGATGCTT+GGG | 0.353018 | 8_2:+66366364 | Msa1263230:CDS |
| TTCCATATAGACTTAAATTC+AGG | 0.357152 | 8_2:-66364048 | None:intergenic |
| CACCAACAATTTGCCTCAAA+AGG | 0.368885 | 8_2:-66363744 | None:intergenic |
| AGTCTGATATAGTTCCTAGA+TGG | 0.373472 | 8_2:+66364352 | Msa1263230:CDS |
| TGTTGGTCATCTCCACATAT+TGG | 0.374229 | 8_2:-66364533 | None:intergenic |
| ATCGGGATTTGGAATGGTTA+AGG | 0.374354 | 8_2:-66363476 | None:intergenic |
| TTTAATACTTTAGGATTTAG+TGG | 0.375338 | 8_2:+66364096 | Msa1263230:CDS |
| CATTGGATATTCTTGATGCT+TGG | 0.377065 | 8_2:+66366363 | Msa1263230:CDS |
| CGTTGAGGCCAATGCCAAAC+TGG | 0.377729 | 8_2:+66364419 | Msa1263230:CDS |
| TTGAGAGTTGTAAACCTTCT+GGG | 0.383130 | 8_2:+66366586 | Msa1263230:CDS |
| CGATATTGAGGAGGAGGTTG+AGG | 0.384212 | 8_2:-66363612 | None:intergenic |
| AGCTCTAAAGAATTTCTTCC+AGG | 0.386230 | 8_2:+66364759 | Msa1263230:CDS |
| CTTGATGCTTGGGCACCAAT+GGG | 0.387314 | 8_2:+66366374 | Msa1263230:CDS |
| TAAGTGTTTGATATGGGTTT+TGG | 0.387861 | 8_2:-66363557 | None:intergenic |
| ACTACAACAGTCTCTTTATC+AGG | 0.391900 | 8_2:-66364276 | None:intergenic |
| GGGAAAGTTAAGGACAGAAC+TGG | 0.395012 | 8_2:+66366404 | Msa1263230:CDS |
| CTGTTGTAGTTGATATAGTT+AGG | 0.396258 | 8_2:+66364289 | Msa1263230:CDS |
| GCTTAGGATCACTCCTGAAA+TGG | 0.405607 | 8_2:+66364164 | Msa1263230:CDS |
| TGGGCACCAATGGGGCCAAA+AGG | 0.407099 | 8_2:+66366383 | Msa1263230:CDS |
| CATTGTTAAAGGTGTCTCAT+TGG | 0.422377 | 8_2:+66364614 | Msa1263230:CDS |
| GTTGGTCATCTCCACATATT+GGG | 0.422883 | 8_2:-66364532 | None:intergenic |
| CAACTATGATATGGAACATA+AGG | 0.423757 | 8_2:+66364587 | Msa1263230:CDS |
| CATGAGGTGCTGTCAGGGTC+AGG | 0.427725 | 8_2:-66363378 | None:intergenic |
| CTAGATGGGCTGTTATTGGT+TGG | 0.429296 | 8_2:+66364367 | Msa1263230:CDS |
| TTCACCGAACCAAGGAGCTT+AGG | 0.436137 | 8_2:-66363649 | None:intergenic |
| GTTTGAGAGAGATTTCGATT+TGG | 0.436427 | 8_2:-66363411 | None:intergenic |
| CACCTCTACCCTAAGCTCCT+TGG | 0.438635 | 8_2:+66363640 | Msa1263230:CDS |
| GGCGTAACCGTCTGTGATTA+TGG | 0.440088 | 8_2:-66363584 | None:intergenic |
| TTTGGAATGGTTAAGGAGAA+TGG | 0.444668 | 8_2:-66363469 | None:intergenic |
| GATGAAATGATTCGCGTCTC+GGG | 0.452056 | 8_2:+66363694 | Msa1263230:CDS |
| TCTTGATGCTTGGGCACCAA+TGG | 0.454394 | 8_2:+66366373 | Msa1263230:CDS |
| TCACCGAACCAAGGAGCTTA+GGG | 0.454863 | 8_2:-66363648 | None:intergenic |
| TTGAGTTGAATGTATTCATC+GGG | 0.458483 | 8_2:-66363493 | None:intergenic |
| CGATGAAATGATTCGCGTCT+CGG | 0.465844 | 8_2:+66363693 | Msa1263230:CDS |
| CTACCCTAAGCTCCTTGGTT+CGG | 0.475301 | 8_2:+66363645 | Msa1263230:CDS |
| GAGGAATTGTCAATGGTCAT+TGG | 0.482408 | 8_2:+66366346 | Msa1263230:intron |
| AAACAAAGCCAGTTTGGCAT+TGG | 0.483784 | 8_2:-66364427 | None:intergenic |
| GAAATGGGGTTGGGTGAGAA+TGG | 0.487022 | 8_2:-66363533 | None:intergenic |
| TTGAGTAGGCTATTATCATC+TGG | 0.488482 | 8_2:+66364726 | Msa1263230:CDS |
| AGAGGTGGTGGACGATATTG+AGG | 0.489507 | 8_2:-66363624 | None:intergenic |
| AGCTTCATGAGGTGCTGTCA+GGG | 0.494004 | 8_2:-66363383 | None:intergenic |
| GCAAGGTTGAAGAGATTGGA+GGG | 0.497565 | 8_2:-66363437 | None:intergenic |
| CGAGTAGGTATGCTTTGCTT+AGG | 0.499985 | 8_2:+66364148 | Msa1263230:CDS |
| ATGATTCGCGTCTCGGGGAT+CGG | 0.500376 | 8_2:+66363700 | Msa1263230:CDS |
| TTTAGTGAAGGGGACAATGT+AGG | 0.502732 | 8_2:-66364696 | None:intergenic |
| ATTGTCCCCTTCACTAAAAG+AGG | 0.504227 | 8_2:+66364701 | Msa1263230:CDS |
| GAATAATCTCGTTCGGTGGA+TGG | 0.504819 | 8_2:-66364329 | None:intergenic |
| GGCATTTGATGTGGTTTGCT+AGG | 0.507728 | 8_2:+66364238 | Msa1263230:CDS |
| ATTGAGGAGGAGGTTGAGGA+AGG | 0.508535 | 8_2:-66363608 | None:intergenic |
| TCAGACTGAATAATCTCGTT+CGG | 0.510418 | 8_2:-66364336 | None:intergenic |
| AACCAAGGAGCTTAGGGTAG+AGG | 0.517188 | 8_2:-66363642 | None:intergenic |
| GGAGCTTAGGGTAGAGGTGG+TGG | 0.517887 | 8_2:-66363636 | None:intergenic |
| TGCTTACTCATGTGAAATTG+GGG | 0.519131 | 8_2:+66364205 | Msa1263230:CDS |
| GCTGATCATTGTAGGGTGAA+TGG | 0.520278 | 8_2:+66363898 | Msa1263230:CDS |
| TCTCTCAGATTTATTTAACT+AGG | 0.520412 | 8_2:+66364121 | Msa1263230:CDS |
| CAACCAATAACAGCCCATCT+AGG | 0.521491 | 8_2:-66364366 | None:intergenic |
| ACCAACAATTTGCCTCAAAA+GGG | 0.521729 | 8_2:-66363743 | None:intergenic |
| GGCGTGTAAGTGTTTGATAT+GGG | 0.523661 | 8_2:-66363563 | None:intergenic |
| GGCAAGGTTGAAGAGATTGG+AGG | 0.528744 | 8_2:-66363438 | None:intergenic |
| GGTGGACGATATTGAGGAGG+AGG | 0.529438 | 8_2:-66363618 | None:intergenic |
| TGAGAGATGCTTGAAGCAGA+TGG | 0.532481 | 8_2:+66366629 | Msa1263230:CDS |
| CTAAAGTATTAAAACTAGAT+GGG | 0.533260 | 8_2:-66364086 | None:intergenic |
| GCATTCTATCACCCAATATG+TGG | 0.534310 | 8_2:+66364521 | Msa1263230:CDS |
| TGAGTCTTTGAAGCGTTTGG+AGG | 0.535228 | 8_2:+66363930 | Msa1263230:CDS |
| GAGGAGGAGGTTGAGGAAGG+TGG | 0.536363 | 8_2:-66363605 | None:intergenic |
| TGAATTTAAGTCTATATGGA+AGG | 0.538174 | 8_2:+66364050 | Msa1263230:CDS |
| TGCACCATCAACAAAATAGC+AGG | 0.538696 | 8_2:-66364501 | None:intergenic |
| GGGCACCAATGGGGCCAAAA+GGG | 0.545446 | 8_2:+66366384 | Msa1263230:CDS |
| GTTGAGTTGAATGTATTCAT+CGG | 0.545569 | 8_2:-66363494 | None:intergenic |
| GGTGCTGTCAGGGTCAGGTT+CGG | 0.546218 | 8_2:-66363373 | None:intergenic |
| GTATTCATCGGGATTTGGAA+TGG | 0.547263 | 8_2:-66363482 | None:intergenic |
| TTTATTTGTTGGCTAAAGAG+AGG | 0.554603 | 8_2:+66366492 | Msa1263230:CDS |
| AATACTTGCATGTGAACTCA+AGG | 0.556834 | 8_2:+66366430 | Msa1263230:CDS |
| GAGAATGGTGGTTTAAGGCA+AGG | 0.557227 | 8_2:-66363454 | None:intergenic |
| TGAAATTGGGGCATCAAAAG+AGG | 0.557265 | 8_2:+66364217 | Msa1263230:CDS |
| TTATTTGTTGGCTAAAGAGA+GGG | 0.558414 | 8_2:+66366493 | Msa1263230:CDS |
| TAATCCCCAAATTTCCCAGA+AGG | 0.559142 | 8_2:-66366600 | None:intergenic |
| TTTATGTTTGAAAATTGGGA+GGG | 0.560716 | 8_2:+66363990 | Msa1263230:CDS |
| TTTCGATTTCTTGAAAGCAA+AGG | 0.563601 | 8_2:+66364639 | Msa1263230:CDS |
| ATGAAATGATTCGCGTCTCG+GGG | 0.570789 | 8_2:+66363695 | Msa1263230:CDS |
| GGGGCCAAAAGGGAAAGTTA+AGG | 0.571105 | 8_2:+66366394 | Msa1263230:CDS |
| CACCGATGATCACCAAAACC+AGG | 0.573763 | 8_2:-66366546 | None:intergenic |
| ATCAAAAGAGGCATTTGATG+TGG | 0.574765 | 8_2:+66364229 | Msa1263230:CDS |
| ATTTATGTTTGAAAATTGGG+AGG | 0.576348 | 8_2:+66363989 | Msa1263230:CDS |
| GTCTGATATAGTTCCTAGAT+GGG | 0.576556 | 8_2:+66364353 | Msa1263230:CDS |
| GTTGGGTGAGAATGGCGTGA+AGG | 0.583675 | 8_2:-66363525 | None:intergenic |
| TAAACCTTCTGGGAAATTTG+GGG | 0.584591 | 8_2:+66366596 | Msa1263230:CDS |
| ATTTCTGTGTGAAGATAGTG+AGG | 0.595600 | 8_2:+66363956 | Msa1263230:CDS |
| GGAAAGTTAAGGACAGAACT+GGG | 0.599987 | 8_2:+66366405 | Msa1263230:CDS |
| TTGCATGTGAACTCAAGGAT+AGG | 0.601616 | 8_2:+66366435 | Msa1263230:CDS |
| GGTGGTGGACGATATTGAGG+AGG | 0.601801 | 8_2:-66363621 | None:intergenic |
| TTGTCCCCTTCACTAAAAGA+GGG | 0.609008 | 8_2:+66364702 | Msa1263230:CDS |
| CAAGGAGCTTAGGGTAGAGG+TGG | 0.611596 | 8_2:-66363639 | None:intergenic |
| GACTGAATAATCTCGTTCGG+TGG | 0.612467 | 8_2:-66364333 | None:intergenic |
| GGAATGGTTAAGGAGAATGG+TGG | 0.620887 | 8_2:-66363466 | None:intergenic |
| CGAGACGCGAATCATTTCAT+CGG | 0.628582 | 8_2:-66363692 | None:intergenic |
| AAACCACTGCACAAAACATG+TGG | 0.636153 | 8_2:-66363853 | None:intergenic |
| CACTAAAAGAGGGATTGAGT+AGG | 0.637046 | 8_2:+66364712 | Msa1263230:CDS |
| TAGGAAGAAGAGTTACGTTG+AGG | 0.637935 | 8_2:+66364404 | Msa1263230:CDS |
| GTTGATGTTTCACCGAACCA+AGG | 0.650917 | 8_2:-66363657 | None:intergenic |
| CTGAAATGGAGACACAATTG+CGG | 0.657938 | 8_2:+66364178 | Msa1263230:CDS |
| ATTTAACTAGGACCTCGAGT+AGG | 0.666777 | 8_2:+66364133 | Msa1263230:CDS |
| TTGATGCTTGGGCACCAATG+GGG | 0.668803 | 8_2:+66366375 | Msa1263230:CDS |
| GCTAAAGAGAGGGAAAAGTG+AGG | 0.681796 | 8_2:+66366503 | Msa1263230:CDS |
| AAGCAAAGCATACCTACTCG+AGG | 0.685114 | 8_2:-66364145 | None:intergenic |
| TTACACGCCATAATCACAGA+CGG | 0.704647 | 8_2:+66363577 | Msa1263230:CDS |
| TTTCTGTGTGAAGATAGTGA+GGG | 0.713281 | 8_2:+66363957 | Msa1263230:CDS |
| GCTTCAAGCATCTCTCAACA+GGG | 0.726539 | 8_2:-66366623 | None:intergenic |
| GAATGGCGTGAAGGATAGCG+TGG | 0.737315 | 8_2:-66363516 | None:intergenic |
| CGATGATCACCAAAACCAGG+AGG | 0.749181 | 8_2:-66366543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCTAAATTAAAAATAA+TGG | - | chr8_2:66365613-66365632 | None:intergenic | 10.0% |
| !!! | TATTTTTAATTTAGAATTGA+TGG | + | chr8_2:66365614-66365633 | Msa1263230:intron | 10.0% |
| !! | TTTCATTTATGTTTGAAAAT+TGG | + | chr8_2:66363985-66364004 | Msa1263230:CDS | 15.0% |
| !! | TTCATTTATGTTTGAAAATT+GGG | + | chr8_2:66363986-66364005 | Msa1263230:CDS | 15.0% |
| !! | ATCAAAATACAAAAAAGAAA+TGG | - | chr8_2:66365882-66365901 | None:intergenic | 15.0% |
| !! | ATTTCAGTGATGATAATTTA+TGG | + | chr8_2:66363770-66363789 | Msa1263230:CDS | 20.0% |
| !!! | CTAAAGTATTAAAACTAGAT+GGG | - | chr8_2:66364089-66364108 | None:intergenic | 20.0% |
| !!! | TTTAATACTTTAGGATTTAG+TGG | + | chr8_2:66364096-66364115 | Msa1263230:CDS | 20.0% |
| !! | TTTGTCTTTAACCTAAATTA+AGG | + | chr8_2:66364822-66364841 | Msa1263230:intron | 20.0% |
| !! | ACTTGAATCTATATAAGAAA+GGG | - | chr8_2:66364900-66364919 | None:intergenic | 20.0% |
| !!! | AAAACTGAAATCTATTTTCA+GGG | - | chr8_2:66365249-66365268 | None:intergenic | 20.0% |
| !!! | TAAAACTGAAATCTATTTTC+AGG | - | chr8_2:66365250-66365269 | None:intergenic | 20.0% |
| !!! | AGTTTTATTTCATATTCTAC+TGG | + | chr8_2:66365263-66365282 | Msa1263230:intron | 20.0% |
| !!! | AAAAGTAGCTTTATAATGTT+GGG | - | chr8_2:66365438-66365457 | None:intergenic | 20.0% |
| !!! | AAAAAGTAGCTTTATAATGT+TGG | - | chr8_2:66365439-66365458 | None:intergenic | 20.0% |
| !!! | GATGGATATTTTTGAAATAT+AGG | + | chr8_2:66365632-66365651 | Msa1263230:intron | 20.0% |
| !!! | CATTTTGTTCTTTATTTGAT+TGG | + | chr8_2:66365911-66365930 | Msa1263230:intron | 20.0% |
| !! | GCTCATTATTTATTGAAAAA+TGG | - | chr8_2:66366030-66366049 | None:intergenic | 20.0% |
| !! | TTCAATAAATAATGAGCTTA+AGG | + | chr8_2:66366033-66366052 | Msa1263230:intron | 20.0% |
| !! | TGACACTTTTATTGGATAAA+TGG | + | chr8_2:66363809-66363828 | Msa1263230:CDS | 25.0% |
| !! | GACACTTTTATTGGATAAAT+GGG | + | chr8_2:66363810-66363829 | Msa1263230:CDS | 25.0% |
| ! | ATTTATGTTTGAAAATTGGG+AGG | + | chr8_2:66363989-66364008 | Msa1263230:CDS | 25.0% |
| ! | TTTATGTTTGAAAATTGGGA+GGG | + | chr8_2:66363990-66364009 | Msa1263230:CDS | 25.0% |
| ! | TTCCTGAATTTAAGTCTATA+TGG | + | chr8_2:66364046-66364065 | Msa1263230:CDS | 25.0% |
| ! | TTCCATATAGACTTAAATTC+AGG | - | chr8_2:66364051-66364070 | None:intergenic | 25.0% |
| ! | TGAATTTAAGTCTATATGGA+AGG | + | chr8_2:66364050-66364069 | Msa1263230:CDS | 25.0% |
| !! | CCTAAAGTATTAAAACTAGA+TGG | - | chr8_2:66364090-66364109 | None:intergenic | 25.0% |
| !!! | CCATCTAGTTTTAATACTTT+AGG | + | chr8_2:66364087-66364106 | Msa1263230:CDS | 25.0% |
| ! | TCTCTCAGATTTATTTAACT+AGG | + | chr8_2:66364121-66364140 | Msa1263230:CDS | 25.0% |
| ! | CATAAGGATATCATTGTTAA+AGG | + | chr8_2:66364603-66364622 | Msa1263230:CDS | 25.0% |
| ! | GACAAATTTAAGAAACTTGA+AGG | - | chr8_2:66364808-66364827 | None:intergenic | 25.0% |
| ! | ATTCTTAGCTACCTTAATTT+AGG | - | chr8_2:66364836-66364855 | None:intergenic | 25.0% |
| ! | TTGAATCTATATAAGAAAGG+GGG | - | chr8_2:66364898-66364917 | None:intergenic | 25.0% |
| ! | CTTGAATCTATATAAGAAAG+GGG | - | chr8_2:66364899-66364918 | None:intergenic | 25.0% |
| ! | CACTTGAATCTATATAAGAA+AGG | - | chr8_2:66364901-66364920 | None:intergenic | 25.0% |
| ! | ATTTCTTAACAAAAGACCAA+AGG | - | chr8_2:66364994-66365013 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTTTGTTAAGAAA+TGG | + | chr8_2:66364993-66365012 | Msa1263230:intron | 25.0% |
| ! | AGAACAATAATCTGGATAAA+AGG | - | chr8_2:66365216-66365235 | None:intergenic | 25.0% |
| !! | TATCTAGAAATAATTTTGCC+TGG | + | chr8_2:66365730-66365749 | Msa1263230:intron | 25.0% |
| !!! | AGTTCTGTAAAAGCTTTAAA+AGG | - | chr8_2:66365853-66365872 | None:intergenic | 25.0% |
| !! | AAGATAAGAAAATGCTACTT+TGG | + | chr8_2:66366084-66366103 | Msa1263230:intron | 25.0% |
| ! | ATTTGTATAGATTGTAACTG+TGG | + | chr8_2:66366300-66366319 | Msa1263230:intron | 25.0% |
| ! | TTTGTATAGATTGTAACTGT+GGG | + | chr8_2:66366301-66366320 | Msa1263230:intron | 25.0% |
| !! | TTGAGTTGAATGTATTCATC+GGG | - | chr8_2:66363496-66363515 | None:intergenic | 30.0% |
| !! | GTTGAGTTGAATGTATTCAT+CGG | - | chr8_2:66363497-66363516 | None:intergenic | 30.0% |
| ! | TAAGTGTTTGATATGGGTTT+TGG | - | chr8_2:66363560-66363579 | None:intergenic | 30.0% |
| GGTGAAACATCAACTTATTT+GGG | + | chr8_2:66363666-66363685 | Msa1263230:CDS | 30.0% | |
| !!! | CTTTATTGATTTCCCTTTTG+AGG | + | chr8_2:66363731-66363750 | Msa1263230:CDS | 30.0% |
| !! | TTTATGGCTTTGTGAGAAAA+TGG | + | chr8_2:66363786-66363805 | Msa1263230:CDS | 30.0% |
| ! | GAAAATGGTGACACTTTTAT+TGG | + | chr8_2:66363801-66363820 | Msa1263230:CDS | 30.0% |
| ! | AAATTGGGAGGGATTTTATT+CGG | + | chr8_2:66364001-66364020 | Msa1263230:CDS | 30.0% |
| TTTGCTTACTCATGTGAAAT+TGG | + | chr8_2:66364203-66364222 | Msa1263230:CDS | 30.0% | |
| TTGCTTACTCATGTGAAATT+GGG | + | chr8_2:66364204-66364223 | Msa1263230:CDS | 30.0% | |
| ! | CTGTTGTAGTTGATATAGTT+AGG | + | chr8_2:66364289-66364308 | Msa1263230:CDS | 30.0% |
| ATCATAAAACAAAGCCAGTT+TGG | - | chr8_2:66364436-66364455 | None:intergenic | 30.0% | |
| !!! | AACTGGCTTTGTTTTATGAT+TGG | + | chr8_2:66364436-66364455 | Msa1263230:CDS | 30.0% |
| !!! | TTGGCTCTTTTTTGATGAAA+AGG | + | chr8_2:66364455-66364474 | Msa1263230:CDS | 30.0% |
| !! | TGAGTTTTTGTTACTTCTTG+TGG | + | chr8_2:66364563-66364582 | Msa1263230:CDS | 30.0% |
| CAACTATGATATGGAACATA+AGG | + | chr8_2:66364587-66364606 | Msa1263230:CDS | 30.0% | |
| TTTCGATTTCTTGAAAGCAA+AGG | + | chr8_2:66364639-66364658 | Msa1263230:CDS | 30.0% | |
| !! | AGAAATTCTTTAGAGCTTTC+AGG | - | chr8_2:66364756-66364775 | None:intergenic | 30.0% |
| AAGGTAGCTAAGAATGTTAT+AGG | + | chr8_2:66364841-66364860 | Msa1263230:intron | 30.0% | |
| ! | AGAATGTTATAGGAGTATGT+AGG | + | chr8_2:66364851-66364870 | Msa1263230:intron | 30.0% |
| GCTATATATACATGTGCTAA+TGG | - | chr8_2:66364951-66364970 | None:intergenic | 30.0% | |
| !!! | TGTTTTGTTTGCATTTCCTT+TGG | + | chr8_2:66364975-66364994 | Msa1263230:intron | 30.0% |
| TTAAGAAATGGCTGTTTAGT+TGG | + | chr8_2:66365005-66365024 | Msa1263230:intron | 30.0% | |
| TAAGAAATGGCTGTTTAGTT+GGG | + | chr8_2:66365006-66365025 | Msa1263230:intron | 30.0% | |
| !!! | ACCAAATGCATTTTTAAGTG+TGG | + | chr8_2:66365059-66365078 | Msa1263230:intron | 30.0% |
| ACCACACTTAAAAATGCATT+TGG | - | chr8_2:66365063-66365082 | None:intergenic | 30.0% | |
| TATGATGCAGAACAATAATC+TGG | - | chr8_2:66365224-66365243 | None:intergenic | 30.0% | |
| TATAATGTTGGGTTATATCC+AGG | - | chr8_2:66365427-66365446 | None:intergenic | 30.0% | |
| ATGATGCTAAAGAAGTTAAG+TGG | - | chr8_2:66365518-66365537 | None:intergenic | 30.0% | |
| TTTAAAAGTCAACCTCAACT+AGG | - | chr8_2:66365588-66365607 | None:intergenic | 30.0% | |
| CAGAATATCTTTACGAACAT+GGG | - | chr8_2:66365762-66365781 | None:intergenic | 30.0% | |
| ACAGAATATCTTTACGAACA+TGG | - | chr8_2:66365763-66365782 | None:intergenic | 30.0% | |
| ! | GAAAAATGGTGATGTAAGTA+TGG | - | chr8_2:66366016-66366035 | None:intergenic | 30.0% |
| AGCTATTAGTAGTAACCTTT+AGG | - | chr8_2:66366210-66366229 | None:intergenic | 30.0% | |
| !!! | AATACTGGAGTTTTTTGTTG+AGG | + | chr8_2:66366327-66366346 | Msa1263230:intron | 30.0% |
| ! | TTTTGTTGAGGAATTGTCAA+TGG | + | chr8_2:66366339-66366358 | Msa1263230:intron | 30.0% |
| ATTGGATATTCTTGATGCTT+GGG | + | chr8_2:66366364-66366383 | Msa1263230:CDS | 30.0% | |
| ! | TTTATTTGTTGGCTAAAGAG+AGG | + | chr8_2:66366492-66366511 | Msa1263230:CDS | 30.0% |
| ! | TTATTTGTTGGCTAAAGAGA+GGG | + | chr8_2:66366493-66366512 | Msa1263230:CDS | 30.0% |
| !!! | ATTTGGTTTTCAGCTTCATG+AGG | - | chr8_2:66363397-66363416 | None:intergenic | 35.0% |
| GTTTGAGAGAGATTTCGATT+TGG | - | chr8_2:66363414-66363433 | None:intergenic | 35.0% | |
| TTAAGGAGAATGGTGGTTTA+AGG | - | chr8_2:66363462-66363481 | None:intergenic | 35.0% | |
| ! | TTTGGAATGGTTAAGGAGAA+TGG | - | chr8_2:66363472-66363491 | None:intergenic | 35.0% |
| TGAATGTATTCATCGGGATT+TGG | - | chr8_2:66363490-66363509 | None:intergenic | 35.0% | |
| !!! | ATATGGGTTTTGGAGAAATG+GGG | - | chr8_2:66363550-66363569 | None:intergenic | 35.0% |
| !!! | GATATGGGTTTTGGAGAAAT+GGG | - | chr8_2:66363551-66363570 | None:intergenic | 35.0% |
| !!! | TGATATGGGTTTTGGAGAAA+TGG | - | chr8_2:66363552-66363571 | None:intergenic | 35.0% |
| CGGTGAAACATCAACTTATT+TGG | + | chr8_2:66363665-66363684 | Msa1263230:CDS | 35.0% | |
| ACCAACAATTTGCCTCAAAA+GGG | - | chr8_2:66363746-66363765 | None:intergenic | 35.0% | |
| !! | GTATGTGTTTCTTCGAGTTT+TGG | + | chr8_2:66363876-66363895 | Msa1263230:CDS | 35.0% |
| !!! | AGTTTTGGCTGATCATTGTA+GGG | + | chr8_2:66363891-66363910 | Msa1263230:CDS | 35.0% |
| ATTTCTGTGTGAAGATAGTG+AGG | + | chr8_2:66363956-66363975 | Msa1263230:CDS | 35.0% | |
| TTTCTGTGTGAAGATAGTGA+GGG | + | chr8_2:66363957-66363976 | Msa1263230:CDS | 35.0% | |
| TGCTTACTCATGTGAAATTG+GGG | + | chr8_2:66364205-66364224 | Msa1263230:CDS | 35.0% | |
| !! | ATCAAAAGAGGCATTTGATG+TGG | + | chr8_2:66364229-66364248 | Msa1263230:CDS | 35.0% |
| ACTACAACAGTCTCTTTATC+AGG | - | chr8_2:66364279-66364298 | None:intergenic | 35.0% | |
| TCAGACTGAATAATCTCGTT+CGG | - | chr8_2:66364339-66364358 | None:intergenic | 35.0% | |
| AGTCTGATATAGTTCCTAGA+TGG | + | chr8_2:66364352-66364371 | Msa1263230:CDS | 35.0% | |
| GTCTGATATAGTTCCTAGAT+GGG | + | chr8_2:66364353-66364372 | Msa1263230:CDS | 35.0% | |
| !!! | GTTGGCTTTTGACAACTTTT+AGG | + | chr8_2:66364385-66364404 | Msa1263230:CDS | 35.0% |
| !!! | AGAACCTGCTATTTTGTTGA+TGG | + | chr8_2:66364497-66364516 | Msa1263230:CDS | 35.0% |
| ! | CAAAAACTCAAGAAGAGTGT+TGG | - | chr8_2:66364553-66364572 | None:intergenic | 35.0% |
| TCTTGTGGACAACTATGATA+TGG | + | chr8_2:66364578-66364597 | Msa1263230:CDS | 35.0% | |
| !! | CATTGTTAAAGGTGTCTCAT+TGG | + | chr8_2:66364614-66364633 | Msa1263230:CDS | 35.0% |
| ! | TCAATCCCTCTTTTAGTGAA+GGG | - | chr8_2:66364710-66364729 | None:intergenic | 35.0% |
| TTGAGTAGGCTATTATCATC+TGG | + | chr8_2:66364726-66364745 | Msa1263230:CDS | 35.0% | |
| !! | AGCTCTAAAGAATTTCTTCC+AGG | + | chr8_2:66364759-66364778 | Msa1263230:CDS | 35.0% |
| ATGATAGACTAGAACATACC+TGG | - | chr8_2:66364780-66364799 | None:intergenic | 35.0% | |
| AGGTATGTTCTAGTCTATCA+TGG | + | chr8_2:66364779-66364798 | Msa1263230:intron | 35.0% | |
| ! | TTATAGGAGTATGTAGGAAG+TGG | + | chr8_2:66364857-66364876 | Msa1263230:intron | 35.0% |
| AATCAGTTTCATGTGTGGTA+TGG | + | chr8_2:66365083-66365102 | Msa1263230:intron | 35.0% | |
| TGAATTATGTAGCTGCTGTT+TGG | - | chr8_2:66365134-66365153 | None:intergenic | 35.0% | |
| TTCTTTGTAGTCTCACTCTT+CGG | + | chr8_2:66365368-66365387 | Msa1263230:intron | 35.0% | |
| GTGATACTTGACTTAAAAGC+AGG | - | chr8_2:66365476-66365495 | None:intergenic | 35.0% | |
| GCATCATTAGCATGAAGTTT+AGG | + | chr8_2:66365531-66365550 | Msa1263230:intron | 35.0% | |
| CGAGCTCTATATTCAATCAA+AGG | + | chr8_2:66365706-66365725 | Msa1263230:intron | 35.0% | |
| TTCATCTACATAAACGCAGT+TGG | - | chr8_2:66366177-66366196 | None:intergenic | 35.0% | |
| TTAGTAGTAACCTTTAGGCA+TGG | - | chr8_2:66366205-66366224 | None:intergenic | 35.0% | |
| AATTGTGTCTGACGTCAATA+AGG | - | chr8_2:66366244-66366263 | None:intergenic | 35.0% | |
| CATTGGATATTCTTGATGCT+TGG | + | chr8_2:66366363-66366382 | Msa1263230:CDS | 35.0% | |
| AATACTTGCATGTGAACTCA+AGG | + | chr8_2:66366430-66366449 | Msa1263230:CDS | 35.0% | |
| GTCTGTCACAGTTTATTTGT+TGG | + | chr8_2:66366481-66366500 | Msa1263230:CDS | 35.0% | |
| !! | TTTTGGTTGAAATATCCTCC+TGG | + | chr8_2:66366528-66366547 | Msa1263230:CDS | 35.0% |
| ! | TTGAAATATCCTCCTGGTTT+TGG | + | chr8_2:66366534-66366553 | Msa1263230:CDS | 35.0% |
| TTTGAGAGTTGTAAACCTTC+TGG | + | chr8_2:66366585-66366604 | Msa1263230:CDS | 35.0% | |
| TTGAGAGTTGTAAACCTTCT+GGG | + | chr8_2:66366586-66366605 | Msa1263230:CDS | 35.0% | |
| ! | TGTAAACCTTCTGGGAAATT+TGG | + | chr8_2:66366594-66366613 | Msa1263230:CDS | 35.0% |
| ! | GTAAACCTTCTGGGAAATTT+GGG | + | chr8_2:66366595-66366614 | Msa1263230:CDS | 35.0% |
| ! | TAAACCTTCTGGGAAATTTG+GGG | + | chr8_2:66366596-66366615 | Msa1263230:CDS | 35.0% |
| TAAGGCAAGGTTGAAGAGAT+TGG | - | chr8_2:66363444-66363463 | None:intergenic | 40.0% | |
| ! | ATCGGGATTTGGAATGGTTA+AGG | - | chr8_2:66363479-66363498 | None:intergenic | 40.0% |
| GTATTCATCGGGATTTGGAA+TGG | - | chr8_2:66363485-66363504 | None:intergenic | 40.0% | |
| GGCGTGTAAGTGTTTGATAT+GGG | - | chr8_2:66363566-66363585 | None:intergenic | 40.0% | |
| TGGCGTGTAAGTGTTTGATA+TGG | - | chr8_2:66363567-66363586 | None:intergenic | 40.0% | |
| TTACACGCCATAATCACAGA+CGG | + | chr8_2:66363577-66363596 | Msa1263230:CDS | 40.0% | |
| !!! | TCCCTTTTGAGGCAAATTGT+TGG | + | chr8_2:66363742-66363761 | Msa1263230:CDS | 40.0% |
| CACCAACAATTTGCCTCAAA+AGG | - | chr8_2:66363747-66363766 | None:intergenic | 40.0% | |
| !!! | CTTTTGAGGCAAATTGTTGG+TGG | + | chr8_2:66363745-66363764 | Msa1263230:CDS | 40.0% |
| AAACCACTGCACAAAACATG+TGG | - | chr8_2:66363856-66363875 | None:intergenic | 40.0% | |
| !!! | GAGTTTTGGCTGATCATTGT+AGG | + | chr8_2:66363890-66363909 | Msa1263230:CDS | 40.0% |
| !! | GTTTGAGTCTTTGAAGCGTT+TGG | + | chr8_2:66363927-66363946 | Msa1263230:CDS | 40.0% |
| ! | GGATTTTATTCGGTTGTTGC+AGG | + | chr8_2:66364011-66364030 | Msa1263230:CDS | 40.0% |
| TATTCGGTTGTTGCAGGATT+TGG | + | chr8_2:66364017-66364036 | Msa1263230:CDS | 40.0% | |
| ATTTAACTAGGACCTCGAGT+AGG | + | chr8_2:66364133-66364152 | Msa1263230:CDS | 40.0% | |
| CTGAAATGGAGACACAATTG+CGG | + | chr8_2:66364178-66364197 | Msa1263230:CDS | 40.0% | |
| ! | TGAAATTGGGGCATCAAAAG+AGG | + | chr8_2:66364217-66364236 | Msa1263230:CDS | 40.0% |
| TAGGAAGAAGAGTTACGTTG+AGG | + | chr8_2:66364404-66364423 | Msa1263230:CDS | 40.0% | |
| AAACAAAGCCAGTTTGGCAT+TGG | - | chr8_2:66364430-66364449 | None:intergenic | 40.0% | |
| TGCACCATCAACAAAATAGC+AGG | - | chr8_2:66364504-66364523 | None:intergenic | 40.0% | |
| GCATTCTATCACCCAATATG+TGG | + | chr8_2:66364521-66364540 | Msa1263230:CDS | 40.0% | |
| GTTGGTCATCTCCACATATT+GGG | - | chr8_2:66364535-66364554 | None:intergenic | 40.0% | |
| TGTTGGTCATCTCCACATAT+TGG | - | chr8_2:66364536-66364555 | None:intergenic | 40.0% | |
| TTTAGTGAAGGGGACAATGT+AGG | - | chr8_2:66364699-66364718 | None:intergenic | 40.0% | |
| ATTGTCCCCTTCACTAAAAG+AGG | + | chr8_2:66364701-66364720 | Msa1263230:CDS | 40.0% | |
| TTGTCCCCTTCACTAAAAGA+GGG | + | chr8_2:66364702-66364721 | Msa1263230:CDS | 40.0% | |
| ! | CAATCCCTCTTTTAGTGAAG+GGG | - | chr8_2:66364709-66364728 | None:intergenic | 40.0% |
| ! | CTCAATCCCTCTTTTAGTGA+AGG | - | chr8_2:66364711-66364730 | None:intergenic | 40.0% |
| CACTAAAAGAGGGATTGAGT+AGG | + | chr8_2:66364712-66364731 | Msa1263230:CDS | 40.0% | |
| GTGGTAATCAGTTTCATGTG+TGG | + | chr8_2:66365078-66365097 | Msa1263230:intron | 40.0% | |
| GGTCAAAGACAAATCTTGCA+CGG | - | chr8_2:66365195-66365214 | None:intergenic | 40.0% | |
| ! | TCTTGCTGTGACACATTTAC+TGG | + | chr8_2:66365328-66365347 | Msa1263230:intron | 40.0% |
| GAGTGAGACTACAAAGAAGT+TGG | - | chr8_2:66365366-66365385 | None:intergenic | 40.0% | |
| ATGTTGTAAGACGAGTAACC+TGG | + | chr8_2:66365406-66365425 | Msa1263230:intron | 40.0% | |
| AGCATGAAGTTTAGGCAACT+TGG | + | chr8_2:66365539-66365558 | Msa1263230:intron | 40.0% | |
| ATCAGCATAAGACCTAGTTG+AGG | + | chr8_2:66365573-66365592 | Msa1263230:intron | 40.0% | |
| GATTGAATATAGAGCTCGCA+TGG | - | chr8_2:66365704-66365723 | None:intergenic | 40.0% | |
| TACGAACATGGGAATATACC+AGG | - | chr8_2:66365751-66365770 | None:intergenic | 40.0% | |
| !! | TACTATACAGTTTGTTGCCC+TGG | - | chr8_2:66365971-66365990 | None:intergenic | 40.0% |
| TACAGAATTGCTCTTGCCTT+GGG | + | chr8_2:66366113-66366132 | Msa1263230:intron | 40.0% | |
| GTTCTATCACAATACTCCCA+AGG | - | chr8_2:66366132-66366151 | None:intergenic | 40.0% | |
| TTCTTGAACACACTTACAGC+TGG | - | chr8_2:66366154-66366173 | None:intergenic | 40.0% | |
| ! | TGTAACTGTGGGTTGAATAC+TGG | + | chr8_2:66366312-66366331 | Msa1263230:intron | 40.0% |
| GAGGAATTGTCAATGGTCAT+TGG | + | chr8_2:66366346-66366365 | Msa1263230:intron | 40.0% | |
| ! | CTGTCCTTAACTTTCCCTTT+TGG | - | chr8_2:66366401-66366420 | None:intergenic | 40.0% |
| GGAAAGTTAAGGACAGAACT+GGG | + | chr8_2:66366405-66366424 | Msa1263230:CDS | 40.0% | |
| TTGCATGTGAACTCAAGGAT+AGG | + | chr8_2:66366435-66366454 | Msa1263230:CDS | 40.0% | |
| TAATCCCCAAATTTCCCAGA+AGG | - | chr8_2:66366603-66366622 | None:intergenic | 40.0% | |
| GCAAGGTTGAAGAGATTGGA+GGG | - | chr8_2:66363440-66363459 | None:intergenic | 45.0% | |
| ! | GAGAATGGTGGTTTAAGGCA+AGG | - | chr8_2:66363457-66363476 | None:intergenic | 45.0% |
| GGAATGGTTAAGGAGAATGG+TGG | - | chr8_2:66363469-66363488 | None:intergenic | 45.0% | |
| !!! | GGTTTTGGAGAAATGGGGTT+GGG | - | chr8_2:66363545-66363564 | None:intergenic | 45.0% |
| GTTGATGTTTCACCGAACCA+AGG | - | chr8_2:66363660-66363679 | None:intergenic | 45.0% | |
| CGAGACGCGAATCATTTCAT+CGG | - | chr8_2:66363695-66363714 | None:intergenic | 45.0% | |
| CGATGAAATGATTCGCGTCT+CGG | + | chr8_2:66363693-66363712 | Msa1263230:CDS | 45.0% | |
| GATGAAATGATTCGCGTCTC+GGG | + | chr8_2:66363694-66363713 | Msa1263230:CDS | 45.0% | |
| ATGAAATGATTCGCGTCTCG+GGG | + | chr8_2:66363695-66363714 | Msa1263230:CDS | 45.0% | |
| GCTGATCATTGTAGGGTGAA+TGG | + | chr8_2:66363898-66363917 | Msa1263230:CDS | 45.0% | |
| !! | TGAGTCTTTGAAGCGTTTGG+AGG | + | chr8_2:66363930-66363949 | Msa1263230:CDS | 45.0% |
| AAGCAAAGCATACCTACTCG+AGG | - | chr8_2:66364148-66364167 | None:intergenic | 45.0% | |
| CGAGTAGGTATGCTTTGCTT+AGG | + | chr8_2:66364148-66364167 | Msa1263230:CDS | 45.0% | |
| GCTTAGGATCACTCCTGAAA+TGG | + | chr8_2:66364164-66364183 | Msa1263230:CDS | 45.0% | |
| CGCAATTGTGTCTCCATTTC+AGG | - | chr8_2:66364180-66364199 | None:intergenic | 45.0% | |
| !! | GGCATTTGATGTGGTTTGCT+AGG | + | chr8_2:66364238-66364257 | Msa1263230:CDS | 45.0% |
| ! | GAATAATCTCGTTCGGTGGA+TGG | - | chr8_2:66364332-66364351 | None:intergenic | 45.0% |
| GACTGAATAATCTCGTTCGG+TGG | - | chr8_2:66364336-66364355 | None:intergenic | 45.0% | |
| !! | GTTCCTAGATGGGCTGTTAT+TGG | + | chr8_2:66364363-66364382 | Msa1263230:CDS | 45.0% |
| CAACCAATAACAGCCCATCT+AGG | - | chr8_2:66364369-66364388 | None:intergenic | 45.0% | |
| !! | CTAGATGGGCTGTTATTGGT+TGG | + | chr8_2:66364367-66364386 | Msa1263230:CDS | 45.0% |
| TGGCTGTTTAGTTGGGACTT+AGG | + | chr8_2:66365013-66365032 | Msa1263230:intron | 45.0% | |
| TGTGTCACAGCAAGAGAAGA+AGG | - | chr8_2:66365323-66365342 | None:intergenic | 45.0% | |
| !! | TTTTCAGTACTGAGTCAGCC+AGG | + | chr8_2:66365950-66365969 | Msa1263230:intron | 45.0% |
| ! | TTTCAGTACTGAGTCAGCCA+GGG | + | chr8_2:66365951-66365970 | Msa1263230:intron | 45.0% |
| GGACAGTGTGAAAAAGAAGC+TGG | + | chr8_2:66366054-66366073 | Msa1263230:intron | 45.0% | |
| GTACAGAATTGCTCTTGCCT+TGG | + | chr8_2:66366112-66366131 | Msa1263230:intron | 45.0% | |
| ! | ATGAAGTGCTCCATGCCTAA+AGG | + | chr8_2:66366192-66366211 | Msa1263230:intron | 45.0% |
| GGGAAAGTTAAGGACAGAAC+TGG | + | chr8_2:66366404-66366423 | Msa1263230:CDS | 45.0% | |
| !! | GGATAGGCCAGTTTTTGAAG+CGG | + | chr8_2:66366451-66366470 | Msa1263230:CDS | 45.0% |
| TGCACATCCGCTTCAAAAAC+TGG | - | chr8_2:66366461-66366480 | None:intergenic | 45.0% | |
| GCTAAAGAGAGGGAAAAGTG+AGG | + | chr8_2:66366503-66366522 | Msa1263230:CDS | 45.0% | |
| !! | GAGGGAAAAGTGAGGTGTTT+TGG | + | chr8_2:66366511-66366530 | Msa1263230:CDS | 45.0% |
| !!! | CTCCTGGTTTTGGTGATCAT+CGG | + | chr8_2:66366544-66366563 | Msa1263230:CDS | 45.0% |
| GCTTCAAGCATCTCTCAACA+GGG | - | chr8_2:66366626-66366645 | None:intergenic | 45.0% | |
| TGCTTCAAGCATCTCTCAAC+AGG | - | chr8_2:66366627-66366646 | None:intergenic | 45.0% | |
| TGAGAGATGCTTGAAGCAGA+TGG | + | chr8_2:66366629-66366648 | Msa1263230:CDS | 45.0% | |
| !! | AGCTTCATGAGGTGCTGTCA+GGG | - | chr8_2:66363386-66363405 | None:intergenic | 50.0% |
| GGCAAGGTTGAAGAGATTGG+AGG | - | chr8_2:66363441-66363460 | None:intergenic | 50.0% | |
| GAAATGGGGTTGGGTGAGAA+TGG | - | chr8_2:66363536-66363555 | None:intergenic | 50.0% | |
| !!! | GGGTTTTGGAGAAATGGGGT+TGG | - | chr8_2:66363546-66363565 | None:intergenic | 50.0% |
| GGCGTAACCGTCTGTGATTA+TGG | - | chr8_2:66363587-66363606 | None:intergenic | 50.0% | |
| ATTGAGGAGGAGGTTGAGGA+AGG | - | chr8_2:66363611-66363630 | None:intergenic | 50.0% | |
| CGATATTGAGGAGGAGGTTG+AGG | - | chr8_2:66363615-66363634 | None:intergenic | 50.0% | |
| !! | AGAGGTGGTGGACGATATTG+AGG | - | chr8_2:66363627-66363646 | None:intergenic | 50.0% |
| AACCAAGGAGCTTAGGGTAG+AGG | - | chr8_2:66363645-66363664 | None:intergenic | 50.0% | |
| CTACCCTAAGCTCCTTGGTT+CGG | + | chr8_2:66363645-66363664 | Msa1263230:CDS | 50.0% | |
| TCACCGAACCAAGGAGCTTA+GGG | - | chr8_2:66363651-66363670 | None:intergenic | 50.0% | |
| TTCACCGAACCAAGGAGCTT+AGG | - | chr8_2:66363652-66363671 | None:intergenic | 50.0% | |
| ! | GCACCACATGTTTTGTGCAG+TGG | + | chr8_2:66363850-66363869 | Msa1263230:CDS | 50.0% |
| CAGCAAGAGAAGAAGGAGGA+GGG | - | chr8_2:66365316-66365335 | None:intergenic | 50.0% | |
| ACAGCAAGAGAAGAAGGAGG+AGG | - | chr8_2:66365317-66365336 | None:intergenic | 50.0% | |
| GTCACAGCAAGAGAAGAAGG+AGG | - | chr8_2:66365320-66365339 | None:intergenic | 50.0% | |
| TCTTGATGCTTGGGCACCAA+TGG | + | chr8_2:66366373-66366392 | Msa1263230:CDS | 50.0% | |
| CTTGATGCTTGGGCACCAAT+GGG | + | chr8_2:66366374-66366393 | Msa1263230:CDS | 50.0% | |
| TTGATGCTTGGGCACCAATG+GGG | + | chr8_2:66366375-66366394 | Msa1263230:CDS | 50.0% | |
| ! | ACTTTCCCTTTTGGCCCCAT+TGG | - | chr8_2:66366392-66366411 | None:intergenic | 50.0% |
| GGGGCCAAAAGGGAAAGTTA+AGG | + | chr8_2:66366394-66366413 | Msa1263230:CDS | 50.0% | |
| CGATGATCACCAAAACCAGG+AGG | - | chr8_2:66366546-66366565 | None:intergenic | 50.0% | |
| CACCGATGATCACCAAAACC+AGG | - | chr8_2:66366549-66366568 | None:intergenic | 50.0% | |
| !!! | CTGGTTTTGGTGATCATCGG+TGG | + | chr8_2:66366547-66366566 | Msa1263230:CDS | 50.0% |
| !! | CAGCTTCATGAGGTGCTGTC+AGG | - | chr8_2:66363387-66363406 | None:intergenic | 55.0% |
| GAATGGCGTGAAGGATAGCG+TGG | - | chr8_2:66363519-66363538 | None:intergenic | 55.0% | |
| GTTGGGTGAGAATGGCGTGA+AGG | - | chr8_2:66363528-66363547 | None:intergenic | 55.0% | |
| GGTGGACGATATTGAGGAGG+AGG | - | chr8_2:66363621-66363640 | None:intergenic | 55.0% | |
| !! | GGTGGTGGACGATATTGAGG+AGG | - | chr8_2:66363624-66363643 | None:intergenic | 55.0% |
| CAAGGAGCTTAGGGTAGAGG+TGG | - | chr8_2:66363642-66363661 | None:intergenic | 55.0% | |
| CACCTCTACCCTAAGCTCCT+TGG | + | chr8_2:66363640-66363659 | Msa1263230:CDS | 55.0% | |
| ATGATTCGCGTCTCGGGGAT+CGG | + | chr8_2:66363700-66363719 | Msa1263230:CDS | 55.0% | |
| CGTTGAGGCCAATGCCAAAC+TGG | + | chr8_2:66364419-66364438 | Msa1263230:CDS | 55.0% | |
| GAAGAAGGAGGAGGGTGATG+TGG | - | chr8_2:66365308-66365327 | None:intergenic | 55.0% | |
| ! | GGTGCTGTCAGGGTCAGGTT+CGG | - | chr8_2:66363376-66363395 | None:intergenic | 60.0% |
| !! | CATGAGGTGCTGTCAGGGTC+AGG | - | chr8_2:66363381-66363400 | None:intergenic | 60.0% |
| GAGGAGGAGGTTGAGGAAGG+TGG | - | chr8_2:66363608-66363627 | None:intergenic | 60.0% | |
| GGAGCTTAGGGTAGAGGTGG+TGG | - | chr8_2:66363639-66363658 | None:intergenic | 60.0% | |
| TGGGCACCAATGGGGCCAAA+AGG | + | chr8_2:66366383-66366402 | Msa1263230:CDS | 60.0% | |
| GGGCACCAATGGGGCCAAAA+GGG | + | chr8_2:66366384-66366403 | Msa1263230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 66363367 | 66366656 | 66363367 | ID=Msa1263230;Name=Msa1263230 |
| chr8_2 | mRNA | 66363367 | 66366656 | 66363367 | ID=Msa1263230-mRNA-1;Parent=Msa1263230;Name=Msa1263230-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|573 |
| chr8_2 | exon | 66363367 | 66364780 | 66363367 | ID=Msa1263230-mRNA-1:exon:21616;Parent=Msa1263230-mRNA-1 |
| chr8_2 | exon | 66366349 | 66366656 | 66366349 | ID=Msa1263230-mRNA-1:exon:21617;Parent=Msa1263230-mRNA-1 |
| chr8_2 | CDS | 66363367 | 66364780 | 66363367 | ID=Msa1263230-mRNA-1:cds;Parent=Msa1263230-mRNA-1 |
| chr8_2 | CDS | 66366349 | 66366656 | 66366349 | ID=Msa1263230-mRNA-1:cds;Parent=Msa1263230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
