Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583180 | XP_003626805.1 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 9.74e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583180 | sp|Q9M1C2|CH101_ARATH | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.41e-55 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583180 | G7LDE7 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 4.65e-91 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa0583180 | 0.827497 | 1.514102e-54 | -8.615850e-47 |
| Msa0037300 | Msa0583180 | 0.824964 | 6.067726e-54 | -8.615850e-47 |
| Msa0073220 | Msa0583180 | 0.838046 | 3.627575e-57 | -8.615850e-47 |
| Msa0075080 | Msa0583180 | 0.804947 | 1.691491e-49 | -8.615850e-47 |
| Msa0077910 | Msa0583180 | 0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0121420 | Msa0583180 | 0.830987 | 2.154403e-55 | -8.615850e-47 |
| Msa0123960 | Msa0583180 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
| Msa0131440 | Msa0583180 | 0.861851 | 7.669625e-64 | -8.615850e-47 |
| Msa0155550 | Msa0583180 | 0.816775 | 4.646306e-52 | -8.615850e-47 |
| Msa0164530 | Msa0583180 | 0.850888 | 1.268942e-60 | -8.615850e-47 |
| Msa0166060 | Msa0583180 | 0.809667 | 1.689700e-50 | -8.615850e-47 |
| Msa0170440 | Msa0583180 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0178020 | Msa0583180 | 0.818175 | 2.247861e-52 | -8.615850e-47 |
| Msa0182610 | Msa0583180 | 0.826636 | 2.433672e-54 | -8.615850e-47 |
| Msa0216390 | Msa0583180 | 0.807755 | 4.328481e-50 | -8.615850e-47 |
| Msa0234930 | Msa0583180 | 0.818462 | 1.935868e-52 | -8.615850e-47 |
| Msa0379450 | Msa0583180 | 0.832788 | 7.739178e-56 | -8.615850e-47 |
| Msa0380270 | Msa0583180 | 0.803056 | 4.181793e-49 | -8.615850e-47 |
| Msa0380390 | Msa0583180 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0380440 | Msa0583180 | 0.825323 | 4.989581e-54 | -8.615850e-47 |
| Msa0412470 | Msa0583180 | 0.817549 | 3.113440e-52 | -8.615850e-47 |
| Msa0415060 | Msa0583180 | 0.838049 | 3.622166e-57 | -8.615850e-47 |
| Msa0420300 | Msa0583180 | 0.808730 | 2.682778e-50 | -8.615850e-47 |
| Msa0423820 | Msa0583180 | 0.819512 | 1.116977e-52 | -8.615850e-47 |
| Msa0425150 | Msa0583180 | 0.801885 | 7.290440e-49 | -8.615850e-47 |
| Msa0438990 | Msa0583180 | 0.822403 | 2.413930e-53 | -8.615850e-47 |
| Msa0448880 | Msa0583180 | 0.800861 | 1.181286e-48 | -8.615850e-47 |
| Msa0463980 | Msa0583180 | 0.806846 | 6.746217e-50 | -8.615850e-47 |
| Msa0475130 | Msa0583180 | 0.808469 | 3.049740e-50 | -8.615850e-47 |
| Msa0256590 | Msa0583180 | 0.815608 | 8.473366e-52 | -8.615850e-47 |
| Msa0273270 | Msa0583180 | 0.817142 | 3.844214e-52 | -8.615850e-47 |
| Msa0273550 | Msa0583180 | 0.809940 | 1.475891e-50 | -8.615850e-47 |
| Msa0294170 | Msa0583180 | 0.851395 | 9.124397e-61 | -8.615850e-47 |
| Msa0295730 | Msa0583180 | 0.829584 | 4.743310e-55 | -8.615850e-47 |
| Msa0296490 | Msa0583180 | 0.826864 | 2.147005e-54 | -8.615850e-47 |
| Msa0307820 | Msa0583180 | 0.803924 | 2.763584e-49 | -8.615850e-47 |
| Msa0313550 | Msa0583180 | 0.820993 | 5.112353e-53 | -8.615850e-47 |
| Msa0503120 | Msa0583180 | 0.804856 | 1.767100e-49 | -8.615850e-47 |
| Msa0504740 | Msa0583180 | 0.807613 | 4.641070e-50 | -8.615850e-47 |
| Msa0506740 | Msa0583180 | 0.811833 | 5.743531e-51 | -8.615850e-47 |
| Msa0510540 | Msa0583180 | 0.800421 | 1.452633e-48 | -8.615850e-47 |
| Msa0515730 | Msa0583180 | 0.847879 | 8.745056e-60 | -8.615850e-47 |
| Msa0522820 | Msa0583180 | 0.801248 | 9.849555e-49 | -8.615850e-47 |
| Msa0524470 | Msa0583180 | 0.814151 | 1.783040e-51 | -8.615850e-47 |
| Msa0572880 | Msa0583180 | 0.832594 | 8.646344e-56 | -8.615850e-47 |
| Msa0583180 | Msa0619870 | 0.816288 | 5.973796e-52 | -8.615850e-47 |
| Msa0583180 | Msa0620050 | 0.817994 | 2.470866e-52 | -8.615850e-47 |
| Msa0583180 | Msa0624700 | 0.850649 | 1.481796e-60 | -8.615850e-47 |
| Msa0583180 | Msa0681910 | 0.811282 | 7.569780e-51 | -8.615850e-47 |
| Msa0583180 | Msa0695470 | 0.824626 | 7.290884e-54 | -8.615850e-47 |
| Msa0583180 | Msa0699200 | 0.808794 | 2.600115e-50 | -8.615850e-47 |
| Msa0583180 | Msa0706490 | 0.850921 | 1.241636e-60 | -8.615850e-47 |
| Msa0583180 | Msa0748890 | 0.815812 | 7.631100e-52 | -8.615850e-47 |
| Msa0583180 | Msa0752290 | 0.806779 | 6.970223e-50 | -8.615850e-47 |
| Msa0583180 | Msa0773080 | 0.810498 | 1.118551e-50 | -8.615850e-47 |
| Msa0583180 | Msa0832270 | 0.817168 | 3.791938e-52 | -8.615850e-47 |
| Msa0583180 | Msa0879820 | 0.809200 | 2.128337e-50 | -8.615850e-47 |
| Msa0583180 | Msa0969050 | 0.844274 | 8.365247e-59 | -8.615850e-47 |
| Msa0583180 | Msa1013560 | 0.838815 | 2.298505e-57 | -8.615850e-47 |
| Msa0583180 | Msa1033120 | 0.823182 | 1.589300e-53 | -8.615850e-47 |
| Msa0583180 | Msa1037380 | 0.818666 | 1.740224e-52 | -8.615850e-47 |
| Msa0583180 | Msa1052800 | 0.812796 | 3.540822e-51 | -8.615850e-47 |
| Msa0583180 | Msa1074730 | 0.890741 | 7.489654e-74 | -8.615850e-47 |
| Msa0583180 | Msa1079630 | 0.813388 | 2.625794e-51 | -8.615850e-47 |
| Msa0583180 | Msa1084150 | 0.806650 | 7.419600e-50 | -8.615850e-47 |
| Msa0583180 | Msa1110350 | 0.884892 | 1.300290e-71 | -8.615850e-47 |
| Msa0583180 | Msa1126310 | 0.813358 | 2.665064e-51 | -8.615850e-47 |
| Msa0583180 | Msa1126320 | 0.804588 | 2.010342e-49 | -8.615850e-47 |
| Msa0583180 | Msa1127510 | 0.808956 | 2.400806e-50 | -8.615850e-47 |
| Msa0583180 | Msa1128200 | 0.802807 | 4.708603e-49 | -8.615850e-47 |
| Msa0583180 | Msa1131300 | 0.816707 | 4.812378e-52 | -8.615850e-47 |
| Msa0583180 | Msa1149960 | 0.808965 | 2.389360e-50 | -8.615850e-47 |
| Msa0583180 | Msa1154020 | 0.885221 | 9.804432e-72 | -8.615850e-47 |
| Msa0583180 | Msa1171030 | 0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0583180 | Msa1202170 | 0.863612 | 2.198253e-64 | -8.615850e-47 |
| Msa0583180 | Msa1208630 | 0.846598 | 1.963692e-59 | -8.615850e-47 |
| Msa0583180 | Msa1208750 | 0.812444 | 4.226329e-51 | -8.615850e-47 |
| Msa0583180 | Msa1235140 | 0.832007 | 1.208149e-55 | -8.615850e-47 |
| Msa0583180 | Msa1250500 | 0.810072 | 1.382124e-50 | -8.615850e-47 |
| Msa0583180 | Msa1264670 | 0.807250 | 5.539900e-50 | -8.615850e-47 |
| Msa0583180 | Msa1267560 | 0.864864 | 8.944924e-65 | -8.615850e-47 |
| Msa0583180 | Msa1272200 | 0.969138 | 1.101362e-129 | -8.615850e-47 |
| Msa0583180 | Msa1294940 | 0.849651 | 2.820029e-60 | -8.615850e-47 |
| Msa0583180 | Msa1297500 | 0.818283 | 2.125070e-52 | -8.615850e-47 |
| Msa0583180 | Msa1297560 | 0.820159 | 7.946211e-53 | -8.615850e-47 |
| Msa0583180 | Msa1298180 | 0.800819 | 1.204885e-48 | -8.615850e-47 |
| Msa0583180 | Msa1305650 | 0.821710 | 3.493536e-53 | -8.615850e-47 |
| Msa0583180 | Msa1367560 | 0.812787 | 3.556595e-51 | -8.615850e-47 |
| Msa0583180 | Msa1375120 | 0.821067 | 4.916800e-53 | -8.615850e-47 |
| Msa0583180 | Msa1375600 | 0.830509 | 2.822269e-55 | -8.615850e-47 |
| Msa0583180 | Msa1376560 | 0.835961 | 1.237133e-56 | -8.615850e-47 |
| Msa0583180 | Msa1376680 | 0.838608 | 2.599120e-57 | -8.615850e-47 |
| Msa0583180 | Msa1388010 | 0.814388 | 1.580716e-51 | -8.615850e-47 |
| Msa0583180 | Msa1398840 | 0.813054 | 3.108104e-51 | -8.615850e-47 |
| Msa0583180 | Msa1403590 | 0.802932 | 4.437481e-49 | -8.615850e-47 |
| Msa0583180 | Msa1411390 | 0.816980 | 4.180133e-52 | -8.615850e-47 |
| Msa0583180 | Msa1411690 | 0.885212 | 9.879067e-72 | -8.615850e-47 |
| Msa0583180 | Msa1412750 | 0.814270 | 1.677794e-51 | -8.615850e-47 |
| Msa0583180 | Msa1418600 | 0.811219 | 7.811689e-51 | -8.615850e-47 |
| Msa0583180 | Msa1419760 | 0.815545 | 8.751413e-52 | -8.615850e-47 |
| Msa0583180 | Msa1426880 | 0.809858 | 1.536892e-50 | -8.615850e-47 |
| Msa0583180 | Msa1437320 | 0.804168 | 2.458436e-49 | -8.615850e-47 |
| Msa0583180 | Msa1439880 | 0.819980 | 8.732990e-53 | -8.615850e-47 |
| Msa0583180 | Msa1455560 | 0.863712 | 2.047206e-64 | -8.615850e-47 |
| Msa0583180 | Msa1456390 | 0.845821 | 3.197147e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583180 | MtrunA17_Chr8g0336931 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 8.96e-95 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583180 | AT3G60210.1 | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.50e-56 | 171 |
| Msa0583180 | AT2G44650.1 | 58.273 | 139 | 54 | 2 | 1 | 135 | 1 | 139 | 2.79e-53 | 164 |
Find 59 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAATGGATTGGAATT+TGG | 0.115284 | 4_2:+1634603 | None:intergenic |
| CAAAGAATGGATTGGAATTT+GGG | 0.188113 | 4_2:+1634604 | None:intergenic |
| CAGCCTCGGCACCAACATTT+AGG | 0.253224 | 4_2:+1633220 | None:intergenic |
| TGAATACATTATTATCAAAA+AGG | 0.306931 | 4_2:+1631009 | None:intergenic |
| TATTCTTTGTTGACATTCCT+TGG | 0.313698 | 4_2:-1630933 | Msa0583180:three_prime_UTR |
| GTATTCATGGCAAATGTATT+AGG | 0.331892 | 4_2:-1630993 | Msa0583180:three_prime_UTR |
| TAAGAAATGGGAACCCTCTA+AGG | 0.340240 | 4_2:-1634322 | Msa0583180:intron |
| AGGTTGTGCCTCAGGCTGAT+AGG | 0.348377 | 4_2:-1634205 | Msa0583180:CDS |
| CATTAAATCAAGTGACTTGT+TGG | 0.348829 | 4_2:-1631079 | Msa0583180:CDS |
| AGAAATTGGAATAACCTTAG+AGG | 0.365531 | 4_2:+1634308 | None:intergenic |
| TTAATGCAATTGCTAAGAAA+TGG | 0.381136 | 4_2:-1634335 | Msa0583180:CDS |
| GGCCGTCGTTGAGTAGGGTT+TGG | 0.386350 | 4_2:-1631058 | Msa0583180:exon |
| ATTCTTTGTTGACATTCCTT+GGG | 0.391711 | 4_2:-1630932 | Msa0583180:three_prime_UTR |
| AGTGACGAAATGATACCTTT+AGG | 0.394240 | 4_2:-1630776 | Msa0583180:three_prime_UTR |
| GAATTATACTTGGGAGTCTC+TGG | 0.395066 | 4_2:+1634474 | None:intergenic |
| CTCAAATTTAACAGCTGACT+TGG | 0.404760 | 4_2:+1633351 | None:intergenic |
| TGGATTGCAGGTTGTGCCTC+AGG | 0.408276 | 4_2:-1634213 | Msa0583180:intron |
| CACCGACATAAATGCTTATG+AGG | 0.413729 | 4_2:-1631398 | Msa0583180:intron |
| CTTGTTGGCCGTCGTTGAGT+AGG | 0.414558 | 4_2:-1631064 | Msa0583180:exon |
| TTGTGAAGGAAGGGAGTTGT+TGG | 0.416342 | 4_2:+1634521 | None:intergenic |
| AAATGTGGAAGCCATGATAC+TGG | 0.436857 | 4_2:+1634553 | None:intergenic |
| TTTGAAGAGGAACTCTTTGA+AGG | 0.442390 | 4_2:-1634358 | Msa0583180:CDS |
| TTAACATTAATCAAAATCCT+TGG | 0.446289 | 4_2:-1630727 | None:intergenic |
| TTATCTCTTATCCAGTATCA+TGG | 0.446387 | 4_2:-1634564 | Msa0583180:exon |
| AATGAACTGTTATCAATCAT+TGG | 0.459294 | 4_2:-1630965 | Msa0583180:three_prime_UTR |
| TAATGCAATTGCTAAGAAAT+GGG | 0.473150 | 4_2:-1634334 | Msa0583180:CDS |
| TGATACCTTTAGGCTGGAGT+TGG | 0.477447 | 4_2:-1630766 | Msa0583180:three_prime_UTR |
| GGTTGTGCCTCAGGCTGATA+GGG | 0.488435 | 4_2:-1634204 | Msa0583180:CDS |
| GTGAACTGAACAACAAAGAA+TGG | 0.490758 | 4_2:+1634591 | None:intergenic |
| TTGTTTCAGGTCCTAAATGT+TGG | 0.499652 | 4_2:-1633231 | Msa0583180:intron |
| TTGTTGGCCGTCGTTGAGTA+GGG | 0.502146 | 4_2:-1631063 | Msa0583180:exon |
| CTGAACAACAAAGAATGGAT+TGG | 0.502168 | 4_2:+1634596 | None:intergenic |
| AAATTTGAGCGATATCTTGT+GGG | 0.511491 | 4_2:-1633337 | Msa0583180:CDS |
| GAAATTGGAATAACCTTAGA+GGG | 0.512239 | 4_2:+1634309 | None:intergenic |
| TAAATTTGAGCGATATCTTG+TGG | 0.516085 | 4_2:-1633338 | Msa0583180:CDS |
| TAGGGTTCTTATTCGTCTTG+AGG | 0.524050 | 4_2:-1634186 | Msa0583180:CDS |
| ACGAAATGATACCTTTAGGC+TGG | 0.526719 | 4_2:-1630772 | Msa0583180:three_prime_UTR |
| TTCTTTGTTGACATTCCTTG+GGG | 0.545808 | 4_2:-1630931 | Msa0583180:three_prime_UTR |
| TCAAATTTAACAGCTGACTT+GGG | 0.548423 | 4_2:+1633352 | None:intergenic |
| GGTTTCCAACTCCAGCCTAA+AGG | 0.549480 | 4_2:+1630761 | None:intergenic |
| TGTTGGTATGGTGAGAAATG+TGG | 0.554797 | 4_2:+1634538 | None:intergenic |
| GAGGCTGAAAATGTAAAAGC+TGG | 0.554966 | 4_2:-1633204 | Msa0583180:CDS |
| TATACTTGGGAGTCTCTGGT+TGG | 0.556109 | 4_2:+1634478 | None:intergenic |
| AGGTATCATTTCGTCACTGA+AGG | 0.572999 | 4_2:+1630781 | None:intergenic |
| TGTCAAGATTGAAGACAAGC+GGG | 0.586481 | 4_2:+1634684 | None:intergenic |
| CTGGTTGGAGAAAGAAGCGG+TGG | 0.589531 | 4_2:+1634493 | None:intergenic |
| TTTGGGCAGAAAACTGCTGG+TGG | 0.594539 | 4_2:-1633385 | Msa0583180:intron |
| AAGGAAGGGAGTTGTTGGTA+TGG | 0.597282 | 4_2:+1634526 | None:intergenic |
| AAATGTAAAAGCTGGCTCGA+AGG | 0.601859 | 4_2:-1633196 | Msa0583180:intron |
| AAAGAATGGATTGGAATTTG+GGG | 0.602324 | 4_2:+1634605 | None:intergenic |
| ATGTCAAGATTGAAGACAAG+CGG | 0.603037 | 4_2:+1634683 | None:intergenic |
| GGTCCTAAATGTTGGTGCCG+AGG | 0.613958 | 4_2:-1633223 | Msa0583180:CDS |
| CTGCTCTTTGTCTCACAAAG+CGG | 0.654255 | 4_2:+1631035 | None:intergenic |
| GGTTGGAGAAAGAAGCGGTG+GGG | 0.659685 | 4_2:+1634495 | None:intergenic |
| AACCTCATAAGCATTTATGT+CGG | 0.663411 | 4_2:+1631396 | None:intergenic |
| GGCCAAACCCTACTCAACGA+CGG | 0.678555 | 4_2:+1631056 | None:intergenic |
| TGGTTGGAGAAAGAAGCGGT+GGG | 0.681233 | 4_2:+1634494 | None:intergenic |
| ATAAGAACCCTATCAGCCTG+AGG | 0.720606 | 4_2:+1634197 | None:intergenic |
| TCTCTGGTTGGAGAAAGAAG+CGG | 0.732198 | 4_2:+1634490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTAATT+TGG | - | chr4_2:1631297-1631316 | Msa0583180:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTAATTT+GGG | - | chr4_2:1631298-1631317 | Msa0583180:intron | 0.0% |
| !!! | TATTAACTTTTTTTTCATTT+GGG | - | chr4_2:1631026-1631045 | Msa0583180:three_prime_UTR | 10.0% |
| !!! | GTATTAACTTTTTTTTCATT+TGG | - | chr4_2:1631025-1631044 | Msa0583180:three_prime_UTR | 15.0% |
| !!! | TATGATTTTTGGTTATTTTT+TGG | - | chr4_2:1631185-1631204 | Msa0583180:intron | 15.0% |
| !! | ATAACAATAAGTTATATGTA+TGG | + | chr4_2:1631864-1631883 | None:intergenic | 15.0% |
| !!! | TGATTGTGAATATAATTTTT+TGG | - | chr4_2:1632015-1632034 | Msa0583180:intron | 15.0% |
| !!! | GATTGTGAATATAATTTTTT+GGG | - | chr4_2:1632016-1632035 | Msa0583180:intron | 15.0% |
| !! | ATATTTGTACTTATGTATAA+AGG | - | chr4_2:1634057-1634076 | Msa0583180:intron | 15.0% |
| !! | TTAAATGAATTAATCAATGT+CGG | - | chr4_2:1634091-1634110 | Msa0583180:intron | 15.0% |
| !! | TGAATACATTATTATCAAAA+AGG | + | chr4_2:1634412-1634431 | None:intergenic | 15.0% |
| !!! | TTTTGATAATAATGTATTCA+TGG | - | chr4_2:1634412-1634431 | Msa0583180:intron | 15.0% |
| !! | TGGATAATAAACCTAAAAAA+GGG | - | chr4_2:1630770-1630789 | Msa0583180:three_prime_UTR | 20.0% |
| !! | CTTCGTTAAAATGAATAAAA+GGG | + | chr4_2:1631006-1631025 | None:intergenic | 20.0% |
| !! | ACTTCGTTAAAATGAATAAA+AGG | + | chr4_2:1631007-1631026 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCATATGATTTT+TGG | - | chr4_2:1631174-1631193 | Msa0583180:intron | 20.0% |
| !!! | AATTTTTTTGGATAAGATTG+TGG | + | chr4_2:1631274-1631293 | None:intergenic | 20.0% |
| !! | TTGTTTATTTACTATGAAAG+AGG | - | chr4_2:1632249-1632268 | Msa0583180:intron | 20.0% |
| !! | TTACTAATTAATTAGTTGTG+AGG | - | chr4_2:1633070-1633089 | Msa0583180:intron | 20.0% |
| !! | TTTGTAATATGAGATATTTC+AGG | - | chr4_2:1633237-1633256 | Msa0583180:intron | 20.0% |
| !!! | AATCATTATGGTAATTTGTT+GGG | - | chr4_2:1633321-1633340 | Msa0583180:intron | 20.0% |
| !! | TAGTTCAAATGATGAAATAA+AGG | - | chr4_2:1633870-1633889 | Msa0583180:intron | 20.0% |
| !! | AAATAAAGGAAAATAGTTAG+TGG | - | chr4_2:1633884-1633903 | Msa0583180:intron | 20.0% |
| !!! | AATCATAATTATTCTTTTGC+AGG | - | chr4_2:1633990-1634009 | Msa0583180:intron | 20.0% |
| !!! | AATTCTAATTTGTAACTCAA+CGG | - | chr4_2:1634235-1634254 | Msa0583180:intron | 20.0% |
| !! | TTAATGTTAAAAAGAGAGAA+GGG | + | chr4_2:1634681-1634700 | None:intergenic | 20.0% |
| !! | ATTAATGTTAAAAAGAGAGA+AGG | + | chr4_2:1634682-1634701 | None:intergenic | 20.0% |
| ! | GTGGATAATAAACCTAAAAA+AGG | - | chr4_2:1630769-1630788 | Msa0583180:three_prime_UTR | 25.0% |
| ! | GTAGAAGAAGAATTATACTT+GGG | + | chr4_2:1630956-1630975 | None:intergenic | 25.0% |
| ! | AGTAGAAGAAGAATTATACT+TGG | + | chr4_2:1630957-1630976 | None:intergenic | 25.0% |
| ! | TTAATGCAATTGCTAAGAAA+TGG | - | chr4_2:1631083-1631102 | Msa0583180:CDS | 25.0% |
| ! | TAATGCAATTGCTAAGAAAT+GGG | - | chr4_2:1631084-1631103 | Msa0583180:CDS | 25.0% |
| ! | CAGAAAATGAAAAGAGAAAT+TGG | + | chr4_2:1631127-1631146 | None:intergenic | 25.0% |
| !! | CAATTTCTCTTTTCATTTTC+TGG | - | chr4_2:1631125-1631144 | Msa0583180:intron | 25.0% |
| !!! | TCTGGTTTTTTGTTTTTGAA+AGG | - | chr4_2:1631143-1631162 | Msa0583180:intron | 25.0% |
| ! | GTGAATGTGATTTAACTATT+TGG | - | chr4_2:1631905-1631924 | Msa0583180:intron | 25.0% |
| ! | TGTAATTGGCACTTATAAAT+TGG | - | chr4_2:1631984-1632003 | Msa0583180:intron | 25.0% |
| ! | ATTATATTCACAATCATGCA+TGG | + | chr4_2:1632011-1632030 | None:intergenic | 25.0% |
| ! | AGTAAGTATACATATTGCAT+AGG | - | chr4_2:1632107-1632126 | Msa0583180:intron | 25.0% |
| ! | TTCAGATGTAAAACAACATA+AGG | + | chr4_2:1632135-1632154 | None:intergenic | 25.0% |
| !! | TTTCCTTTTGTATTTGTTTC+AGG | - | chr4_2:1632174-1632193 | Msa0583180:intron | 25.0% |
| !! | TTAAGTTGCTATTGTAAACT+GGG | + | chr4_2:1632521-1632540 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGCTATTGTAAAC+TGG | + | chr4_2:1632522-1632541 | None:intergenic | 25.0% |
| ! | TAAATTACCGATATTCAATG+TGG | - | chr4_2:1632538-1632557 | Msa0583180:intron | 25.0% |
| !! | ACTTTTAGCAATGAAAGTTT+AGG | - | chr4_2:1632890-1632909 | Msa0583180:intron | 25.0% |
| ! | AGACATTAGTTCAATCATTA+TGG | - | chr4_2:1633309-1633328 | Msa0583180:intron | 25.0% |
| !! | CAATCATTATGGTAATTTGT+TGG | - | chr4_2:1633320-1633339 | Msa0583180:intron | 25.0% |
| !!! | ATAACACAATTTTGAAGAAG+CGG | + | chr4_2:1633491-1633510 | None:intergenic | 25.0% |
| ! | TTATTTGTACAGTATCTATC+TGG | - | chr4_2:1633533-1633552 | Msa0583180:intron | 25.0% |
| ! | TATGAACAAGTTCATAACTT+GGG | + | chr4_2:1633599-1633618 | None:intergenic | 25.0% |
| ! | TTATGAACAAGTTCATAACT+TGG | + | chr4_2:1633600-1633619 | None:intergenic | 25.0% |
| !! | TTGTGTCTAAAGAAATTTTC+AGG | - | chr4_2:1633642-1633661 | Msa0583180:intron | 25.0% |
| !!! | CATTTTTTAAGAACCACATT+CGG | - | chr4_2:1633688-1633707 | Msa0583180:intron | 25.0% |
| !!! | ATTTTTTAAGAACCACATTC+GGG | - | chr4_2:1633689-1633708 | Msa0583180:intron | 25.0% |
| !! | GTCTAAACTTGATAATATAG+AGG | - | chr4_2:1633779-1633798 | Msa0583180:intron | 25.0% |
| !!! | TATTGGTCTAATTGTTTTTC+AGG | - | chr4_2:1634285-1634304 | Msa0583180:intron | 25.0% |
| ! | AATGAACTGTTATCAATCAT+TGG | - | chr4_2:1634453-1634472 | Msa0583180:intron | 25.0% |
| !!! | GTGTTGTTAAACCCTTTTTT+AGG | + | chr4_2:1630784-1630803 | None:intergenic | 30.0% |
| !! | AAAGAATGGATTGGAATTTG+GGG | + | chr4_2:1630816-1630835 | None:intergenic | 30.0% |
| !! | CAAAGAATGGATTGGAATTT+GGG | + | chr4_2:1630817-1630836 | None:intergenic | 30.0% |
| !! | ACAAAGAATGGATTGGAATT+TGG | + | chr4_2:1630818-1630837 | None:intergenic | 30.0% |
| TTATCTCTTATCCAGTATCA+TGG | - | chr4_2:1630854-1630873 | Msa0583180:three_prime_UTR | 30.0% | |
| GAAATTGGAATAACCTTAGA+GGG | + | chr4_2:1631112-1631131 | None:intergenic | 30.0% | |
| AGAAATTGGAATAACCTTAG+AGG | + | chr4_2:1631113-1631132 | None:intergenic | 30.0% | |
| !!! | TTGGTTATTTTTTGGATTGC+AGG | - | chr4_2:1631193-1631212 | Msa0583180:intron | 30.0% |
| !! | CTTGTTATTGTTCCAATGTT+TGG | - | chr4_2:1631446-1631465 | Msa0583180:intron | 30.0% |
| ! | TGAATGTTGGATTTGTTTGT+AGG | - | chr4_2:1631516-1631535 | Msa0583180:intron | 30.0% |
| ! | GAATGTTGGATTTGTTTGTA+GGG | - | chr4_2:1631517-1631536 | Msa0583180:intron | 30.0% |
| AACACATCAAATTCATGACA+CGG | + | chr4_2:1631579-1631598 | None:intergenic | 30.0% | |
| TGTCATGAATTTGATGTGTT+TGG | - | chr4_2:1631579-1631598 | Msa0583180:intron | 30.0% | |
| AAAACTAAGCTGTATCACAT+TGG | - | chr4_2:1631621-1631640 | Msa0583180:intron | 30.0% | |
| CAATGAGGATATATCAGATT+AGG | + | chr4_2:1631654-1631673 | None:intergenic | 30.0% | |
| TGCAGTTATCTCGATAATAA+GGG | + | chr4_2:1631731-1631750 | None:intergenic | 30.0% | |
| TTGCAGTTATCTCGATAATA+AGG | + | chr4_2:1631732-1631751 | None:intergenic | 30.0% | |
| TACTCATAAGTCATGTAAGA+AGG | - | chr4_2:1631786-1631805 | Msa0583180:intron | 30.0% | |
| ! | ATGTAAGAAGGTATAGACTA+GGG | - | chr4_2:1631798-1631817 | Msa0583180:intron | 30.0% |
| !! | ATTTTGCTATAATGTCCGTA+AGG | - | chr4_2:1631956-1631975 | Msa0583180:intron | 30.0% |
| ! | TCAAATTTAACAGCTGACTT+GGG | + | chr4_2:1632069-1632088 | None:intergenic | 30.0% |
| TAAATTTGAGCGATATCTTG+TGG | - | chr4_2:1632080-1632099 | Msa0583180:intron | 30.0% | |
| AAATTTGAGCGATATCTTGT+GGG | - | chr4_2:1632081-1632100 | Msa0583180:intron | 30.0% | |
| TGCTTGCCATTGTAAAATTA+GGG | + | chr4_2:1632399-1632418 | None:intergenic | 30.0% | |
| TTGCTTGCCATTGTAAAATT+AGG | + | chr4_2:1632400-1632419 | None:intergenic | 30.0% | |
| TGACATAAATCCTAATCACA+AGG | - | chr4_2:1632430-1632449 | Msa0583180:intron | 30.0% | |
| TTTCATTACCAATAACTCCA+GGG | + | chr4_2:1632476-1632495 | None:intergenic | 30.0% | |
| ATTTCATTACCAATAACTCC+AGG | + | chr4_2:1632477-1632496 | None:intergenic | 30.0% | |
| AATGAAAGTTTAGGTGTGTT+GGG | - | chr4_2:1632899-1632918 | Msa0583180:intron | 30.0% | |
| CACACTTAAATATGATGAGA+AGG | - | chr4_2:1633047-1633066 | Msa0583180:intron | 30.0% | |
| ! | AATGTGATGCAACATTTTTG+AGG | - | chr4_2:1633262-1633281 | Msa0583180:intron | 30.0% |
| !! | AATTTTGAAGAAGCGGATAA+GGG | + | chr4_2:1633484-1633503 | None:intergenic | 30.0% |
| !!! | TGTTATTTTGCAACTCTGTT+TGG | - | chr4_2:1633505-1633524 | Msa0583180:intron | 30.0% |
| TATAATAAGTATCCCGAATG+TGG | + | chr4_2:1633704-1633723 | None:intergenic | 30.0% | |
| ACTCATTAATCAAATGACCA+TGG | - | chr4_2:1633730-1633749 | Msa0583180:intron | 30.0% | |
| CAAAGTGATAATAGAAACCA+TGG | + | chr4_2:1633750-1633769 | None:intergenic | 30.0% | |
| AACCTCATAAGCATTTATGT+CGG | + | chr4_2:1634025-1634044 | None:intergenic | 30.0% | |
| ! | TATCTGAAGAACAACTTTTG+TGG | - | chr4_2:1634126-1634145 | Msa0583180:intron | 30.0% |
| ! | ATCTGAAGAACAACTTTTGT+GGG | - | chr4_2:1634127-1634146 | Msa0583180:intron | 30.0% |
| !!! | AATTGTTTTTCAGGTGGATT+TGG | - | chr4_2:1634294-1634313 | Msa0583180:intron | 30.0% |
| !!! | ATTGTTTTTCAGGTGGATTT+GGG | - | chr4_2:1634295-1634314 | Msa0583180:intron | 30.0% |
| ! | CATTAAATCAAGTGACTTGT+TGG | - | chr4_2:1634339-1634358 | Msa0583180:CDS | 30.0% |
| GTATTCATGGCAAATGTATT+AGG | - | chr4_2:1634425-1634444 | Msa0583180:intron | 30.0% | |
| TATTCTTTGTTGACATTCCT+TGG | - | chr4_2:1634485-1634504 | Msa0583180:CDS | 30.0% | |
| ATTCTTTGTTGACATTCCTT+GGG | - | chr4_2:1634486-1634505 | Msa0583180:CDS | 30.0% | |
| !!! | TCTGCTTTTTTCAATATTGC+TGG | - | chr4_2:1634538-1634557 | Msa0583180:CDS | 30.0% |
| !!! | CTGCTTTTTTCAATATTGCT+GGG | - | chr4_2:1634539-1634558 | Msa0583180:CDS | 30.0% |
| ATGTCAAGATTGAAGACAAG+CGG | + | chr4_2:1630738-1630757 | None:intergenic | 35.0% | |
| ! | CTTGACATTTTGTGACTTTG+TGG | - | chr4_2:1630750-1630769 | Msa0583180:three_prime_UTR | 35.0% |
| CTGAACAACAAAGAATGGAT+TGG | + | chr4_2:1630825-1630844 | None:intergenic | 35.0% | |
| GTGAACTGAACAACAAAGAA+TGG | + | chr4_2:1630830-1630849 | None:intergenic | 35.0% | |
| !!! | GGTATGTTTCAGTTTTGAAG+AGG | - | chr4_2:1631047-1631066 | Msa0583180:exon | 35.0% |
| TTTGAAGAGGAACTCTTTGA+AGG | - | chr4_2:1631060-1631079 | Msa0583180:exon | 35.0% | |
| GCAGTCTTGAAATAATCACT+AGG | - | chr4_2:1631474-1631493 | Msa0583180:intron | 35.0% | |
| CTAGGATAAGTTCAAACTGT+AGG | - | chr4_2:1631492-1631511 | Msa0583180:intron | 35.0% | |
| ! | GATTTGTTTGTAGGGATCAT+TGG | - | chr4_2:1631525-1631544 | Msa0583180:intron | 35.0% |
| !! | GTTGTTTTGTCAGTGAAAAC+AGG | - | chr4_2:1631693-1631712 | Msa0583180:intron | 35.0% |
| TCTCGATAATAAGGGAACAT+CGG | + | chr4_2:1631723-1631742 | None:intergenic | 35.0% | |
| ! | CATGTAAGAAGGTATAGACT+AGG | - | chr4_2:1631797-1631816 | Msa0583180:intron | 35.0% |
| ! | TCCGTAAGGTATTCTGTAAT+TGG | - | chr4_2:1631970-1631989 | Msa0583180:intron | 35.0% |
| GCCAATTACAGAATACCTTA+CGG | + | chr4_2:1631974-1631993 | None:intergenic | 35.0% | |
| CTCAAATTTAACAGCTGACT+TGG | + | chr4_2:1632070-1632089 | None:intergenic | 35.0% | |
| GGACCTGAAACAAATACAAA+AGG | + | chr4_2:1632180-1632199 | None:intergenic | 35.0% | |
| ! | TTGTTTCAGGTCCTAAATGT+TGG | - | chr4_2:1632187-1632206 | Msa0583180:intron | 35.0% |
| ! | AGCTTTTACATTTTCAGCCT+CGG | + | chr4_2:1632215-1632234 | None:intergenic | 35.0% |
| TGAAAGAGGTGAAGTAGAAA+AGG | - | chr4_2:1632263-1632282 | Msa0583180:intron | 35.0% | |
| ! | TAGTTGACTCAGATTCTGAA+AGG | - | chr4_2:1632370-1632389 | Msa0583180:intron | 35.0% |
| ! | AGGACACCCTAATTTTACAA+TGG | - | chr4_2:1632390-1632409 | Msa0583180:intron | 35.0% |
| CTTGTTTGAACCTTGTGATT+AGG | + | chr4_2:1632443-1632462 | None:intergenic | 35.0% | |
| ! | TAAACTGGGAATTGGAGTTT+TGG | + | chr4_2:1632507-1632526 | None:intergenic | 35.0% |
| TGCTATTGTAAACTGGGAAT+TGG | + | chr4_2:1632515-1632534 | None:intergenic | 35.0% | |
| CCATAGACCACATTGAATAT+CGG | + | chr4_2:1632548-1632567 | None:intergenic | 35.0% | |
| ATATTCAATGTGGTCTATGG+CGG | - | chr4_2:1632548-1632567 | Msa0583180:intron | 35.0% | |
| TCAGCAGTGTTGTCAAATAT+CGG | + | chr4_2:1632714-1632733 | None:intergenic | 35.0% | |
| ACCAATATTCCCAAATCTGT+TGG | - | chr4_2:1632742-1632761 | Msa0583180:intron | 35.0% | |
| ACCAACAGATTTGGGAATAT+TGG | + | chr4_2:1632746-1632765 | None:intergenic | 35.0% | |
| TCTAATCTAATCAGCCCAAA+AGG | + | chr4_2:1632852-1632871 | None:intergenic | 35.0% | |
| CAATGAAAGTTTAGGTGTGT+TGG | - | chr4_2:1632898-1632917 | Msa0583180:intron | 35.0% | |
| AAAATCATACGAGCACTAAG+TGG | - | chr4_2:1633353-1633372 | Msa0583180:CDS | 35.0% | |
| ! | TGTTAGATCTTGCTATCACA+AGG | + | chr4_2:1633379-1633398 | None:intergenic | 35.0% |
| GATAGCAAGATCTAACAACT+TGG | - | chr4_2:1633382-1633401 | Msa0583180:intron | 35.0% | |
| ! | AACTTGGAAGTCTCTTTTGT+TGG | - | chr4_2:1633398-1633417 | Msa0583180:intron | 35.0% |
| ! | ACTTGGAAGTCTCTTTTGTT+GGG | - | chr4_2:1633399-1633418 | Msa0583180:intron | 35.0% |
| !! | CAATTTTGAAGAAGCGGATA+AGG | + | chr4_2:1633485-1633504 | None:intergenic | 35.0% |
| ! | TCCACATAGTTCTTAACTTG+TGG | - | chr4_2:1633556-1633575 | Msa0583180:intron | 35.0% |
| TCCACAAGTTAAGAACTATG+TGG | + | chr4_2:1633560-1633579 | None:intergenic | 35.0% | |
| AACAAGTTCATAACTTGGGA+AGG | + | chr4_2:1633595-1633614 | None:intergenic | 35.0% | |
| TCACTTATTTGCATTCCATG+CGG | - | chr4_2:1633813-1633832 | Msa0583180:intron | 35.0% | |
| ! | GTATTTGAGCAAGTGCTATT+TGG | - | chr4_2:1634152-1634171 | Msa0583180:intron | 35.0% |
| !!! | TGGTCTAATTGTTTTTCAGG+TGG | - | chr4_2:1634288-1634307 | Msa0583180:intron | 35.0% |
| !!! | TTGTTTTTCAGGTGGATTTG+GGG | - | chr4_2:1634296-1634315 | Msa0583180:intron | 35.0% |
| TTCTTTGTTGACATTCCTTG+GGG | - | chr4_2:1634487-1634506 | Msa0583180:CDS | 35.0% | |
| AGTGACGAAATGATACCTTT+AGG | - | chr4_2:1634642-1634661 | Msa0583180:five_prime_UTR | 35.0% | |
| TGTCAAGATTGAAGACAAGC+GGG | + | chr4_2:1630737-1630756 | None:intergenic | 40.0% | |
| AAATGTGGAAGCCATGATAC+TGG | + | chr4_2:1630868-1630887 | None:intergenic | 40.0% | |
| TGTTGGTATGGTGAGAAATG+TGG | + | chr4_2:1630883-1630902 | None:intergenic | 40.0% | |
| GAATTATACTTGGGAGTCTC+TGG | + | chr4_2:1630947-1630966 | None:intergenic | 40.0% | |
| TAAGAAATGGGAACCCTCTA+AGG | - | chr4_2:1631096-1631115 | Msa0583180:CDS | 40.0% | |
| TAGGGTTCTTATTCGTCTTG+AGG | - | chr4_2:1631232-1631251 | Msa0583180:intron | 40.0% | |
| TCAAACTGTAGGCTGAATGT+TGG | - | chr4_2:1631503-1631522 | Msa0583180:intron | 40.0% | |
| TGACACGGTACAACATCAAA+CGG | + | chr4_2:1631564-1631583 | None:intergenic | 40.0% | |
| ACTAAGCTGTATCACATTGG+TGG | - | chr4_2:1631624-1631643 | Msa0583180:intron | 40.0% | |
| CAAGCTGATGACATTCAATG+AGG | + | chr4_2:1631669-1631688 | None:intergenic | 40.0% | |
| CTCATTGAATGTCATCAGCT+TGG | - | chr4_2:1631667-1631686 | Msa0583180:intron | 40.0% | |
| !!! | TTTTTTGGGCAGAAAACTGC+TGG | - | chr4_2:1632030-1632049 | Msa0583180:intron | 40.0% |
| GAGGCTGAAAATGTAAAAGC+TGG | - | chr4_2:1632214-1632233 | Msa0583180:intron | 40.0% | |
| !! | AAATGTAAAAGCTGGCTCGA+AGG | - | chr4_2:1632222-1632241 | Msa0583180:intron | 40.0% |
| AAACAAGTAACCATGAACCC+TGG | - | chr4_2:1632456-1632475 | Msa0583180:intron | 40.0% | |
| CCGATATTCAATGTGGTCTA+TGG | - | chr4_2:1632545-1632564 | Msa0583180:intron | 40.0% | |
| CTGCCATATCTGCTGAAATT+GGG | - | chr4_2:1632646-1632665 | Msa0583180:intron | 40.0% | |
| ATGCCCAATTTCAGCAGATA+TGG | + | chr4_2:1632652-1632671 | None:intergenic | 40.0% | |
| ATATCTGCTGAAATTGGGCA+TGG | - | chr4_2:1632651-1632670 | Msa0583180:intron | 40.0% | |
| ! | AGATATCAGTGGGGGTTTTT+GGG | + | chr4_2:1632684-1632703 | None:intergenic | 40.0% |
| GAGCTTCAACCAACAGATTT+GGG | + | chr4_2:1632754-1632773 | None:intergenic | 40.0% | |
| TGAGCTTCAACCAACAGATT+TGG | + | chr4_2:1632755-1632774 | None:intergenic | 40.0% | |
| ! | TGTTGGTTGAAGCTCATAGA+TGG | - | chr4_2:1632759-1632778 | Msa0583180:intron | 40.0% |
| CAAAGGTCTTCTGTTTGAGA+GGG | + | chr4_2:1632798-1632817 | None:intergenic | 40.0% | |
| AGACCTTTGGACTTAAACGT+TGG | - | chr4_2:1632809-1632828 | Msa0583180:intron | 40.0% | |
| TGTCCAACGTTTAAGTCCAA+AGG | + | chr4_2:1632815-1632834 | None:intergenic | 40.0% | |
| ATCTAATCAGCCCAAAAGGT+GGG | + | chr4_2:1632848-1632867 | None:intergenic | 40.0% | |
| AATCTAATCAGCCCAAAAGG+TGG | + | chr4_2:1632849-1632868 | None:intergenic | 40.0% | |
| ! | CTTGGAAGTCTCTTTTGTTG+GGG | - | chr4_2:1633400-1633419 | Msa0583180:intron | 40.0% |
| ACACAAATTCGTCTGCTGAA+GGG | + | chr4_2:1633628-1633647 | None:intergenic | 40.0% | |
| CACTTATTTGCATTCCATGC+GGG | - | chr4_2:1633814-1633833 | Msa0583180:intron | 40.0% | |
| CACCGACATAAATGCTTATG+AGG | - | chr4_2:1634020-1634039 | Msa0583180:intron | 40.0% | |
| ! | CTTTTCTCAAGAAAGCAGTG+TGG | + | chr4_2:1634204-1634223 | None:intergenic | 40.0% |
| GCAAAATCAAAAACTCCCCA+AGG | + | chr4_2:1634505-1634524 | None:intergenic | 40.0% | |
| AGGTATCATTTCGTCACTGA+AGG | + | chr4_2:1634640-1634659 | None:intergenic | 40.0% | |
| ACGAAATGATACCTTTAGGC+TGG | - | chr4_2:1634646-1634665 | Msa0583180:five_prime_UTR | 40.0% | |
| AAGGAAGGGAGTTGTTGGTA+TGG | + | chr4_2:1630895-1630914 | None:intergenic | 45.0% | |
| TTGTGAAGGAAGGGAGTTGT+TGG | + | chr4_2:1630900-1630919 | None:intergenic | 45.0% | |
| ! | GTGGGGTTTTTGTGAAGGAA+GGG | + | chr4_2:1630909-1630928 | None:intergenic | 45.0% |
| TCTCTGGTTGGAGAAAGAAG+CGG | + | chr4_2:1630931-1630950 | None:intergenic | 45.0% | |
| TATACTTGGGAGTCTCTGGT+TGG | + | chr4_2:1630943-1630962 | None:intergenic | 45.0% | |
| ATAAGAACCCTATCAGCCTG+AGG | + | chr4_2:1631224-1631243 | None:intergenic | 45.0% | |
| AGACTGCAGACACCAAACAT+TGG | + | chr4_2:1631461-1631480 | None:intergenic | 45.0% | |
| ACCATGAACCCTGGAGTTAT+TGG | - | chr4_2:1632465-1632484 | Msa0583180:intron | 45.0% | |
| ACCAATAACTCCAGGGTTCA+TGG | + | chr4_2:1632469-1632488 | None:intergenic | 45.0% | |
| GACGCCGTCATTTCAGATTA+CGG | - | chr4_2:1632614-1632633 | Msa0583180:intron | 45.0% | |
| ! | TCCGCCGTAATCTGAAATGA+CGG | + | chr4_2:1632621-1632640 | None:intergenic | 45.0% |
| CCAATTTCAGCAGATATGGC+AGG | + | chr4_2:1632648-1632667 | None:intergenic | 45.0% | |
| CCTGCCATATCTGCTGAAAT+TGG | - | chr4_2:1632645-1632664 | Msa0583180:intron | 45.0% | |
| ! | CAGATATCAGTGGGGGTTTT+TGG | + | chr4_2:1632685-1632704 | None:intergenic | 45.0% |
| GTGTTGTCAAATATCGGCCA+TGG | + | chr4_2:1632708-1632727 | None:intergenic | 45.0% | |
| CCAAAGGTCTTCTGTTTGAG+AGG | + | chr4_2:1632799-1632818 | None:intergenic | 45.0% | |
| CCTCTCAAACAGAAGACCTT+TGG | - | chr4_2:1632796-1632815 | Msa0583180:intron | 45.0% | |
| TAAACGTTGGACAATGCCAC+TGG | - | chr4_2:1632822-1632841 | Msa0583180:intron | 45.0% | |
| TACACGTTCGTTGAGCCTTA+AGG | + | chr4_2:1632954-1632973 | None:intergenic | 45.0% | |
| CCTAAGCTGCTCATAACACA+CGG | - | chr4_2:1633099-1633118 | Msa0583180:intron | 45.0% | |
| ! | AAGTCTCTTTTGTTGGGGTG+AGG | - | chr4_2:1633405-1633424 | Msa0583180:intron | 45.0% |
| TTGTTGGGGTGAGGATTCAT+TGG | - | chr4_2:1633414-1633433 | Msa0583180:intron | 45.0% | |
| GACACAAATTCGTCTGCTGA+AGG | + | chr4_2:1633629-1633648 | None:intergenic | 45.0% | |
| TCTCAAGAAAGCAGTGTGGT+TGG | + | chr4_2:1634200-1634219 | None:intergenic | 45.0% | |
| CTGCTCTTTGTCTCACAAAG+CGG | + | chr4_2:1634386-1634405 | None:intergenic | 45.0% | |
| TGATACCTTTAGGCTGGAGT+TGG | - | chr4_2:1634652-1634671 | Msa0583180:five_prime_UTR | 45.0% | |
| !!! | AAAAAAAAAACTAATTTTTT+TGG | + | chr4_2:1631286-1631305 | None:intergenic | 5.0% |
| !! | TTCAAAAAAAAATTTAAATA+TGG | + | chr4_2:1633947-1633966 | None:intergenic | 5.0% |
| !! | TTATGATTATAATTTAAATA+TGG | + | chr4_2:1633978-1633997 | None:intergenic | 5.0% |
| !! | CATTAATAAATAATAAATAT+TGG | - | chr4_2:1634268-1634287 | Msa0583180:intron | 5.0% |
| ! | GGTGGGGTTTTTGTGAAGGA+AGG | + | chr4_2:1630910-1630929 | None:intergenic | 50.0% |
| ! | AAGCGGTGGGGTTTTTGTGA+AGG | + | chr4_2:1630914-1630933 | None:intergenic | 50.0% |
| TGGTTGGAGAAAGAAGCGGT+GGG | + | chr4_2:1630927-1630946 | None:intergenic | 50.0% | |
| TTTGGGCAGAAAACTGCTGG+TGG | - | chr4_2:1632033-1632052 | Msa0583180:intron | 50.0% | |
| GCCGTCATTTCAGATTACGG+CGG | - | chr4_2:1632617-1632636 | Msa0583180:intron | 50.0% | |
| TCTGCTGAAATTGGGCATGG+CGG | - | chr4_2:1632654-1632673 | Msa0583180:intron | 50.0% | |
| AGTTTAGGTGTGTTGGGCTC+CGG | - | chr4_2:1632905-1632924 | Msa0583180:intron | 50.0% | |
| GGCTCAACGAACGTGTACAA+CGG | - | chr4_2:1632957-1632976 | Msa0583180:intron | 50.0% | |
| CCGTGTGTTATGAGCAGCTT+AGG | + | chr4_2:1633102-1633121 | None:intergenic | 50.0% | |
| TTTGCATTCCATGCGGGTAG+TGG | - | chr4_2:1633820-1633839 | Msa0583180:intron | 50.0% | |
| TTGTTGGCCGTCGTTGAGTA+GGG | - | chr4_2:1634355-1634374 | Msa0583180:CDS | 50.0% | |
| GGTTTCCAACTCCAGCCTAA+AGG | + | chr4_2:1634660-1634679 | None:intergenic | 50.0% | |
| GGTTGGAGAAAGAAGCGGTG+GGG | + | chr4_2:1630926-1630945 | None:intergenic | 55.0% | |
| CTGGTTGGAGAAAGAAGCGG+TGG | + | chr4_2:1630928-1630947 | None:intergenic | 55.0% | |
| TGGATTGCAGGTTGTGCCTC+AGG | - | chr4_2:1631205-1631224 | Msa0583180:intron | 55.0% | |
| AGGTTGTGCCTCAGGCTGAT+AGG | - | chr4_2:1631213-1631232 | Msa0583180:intron | 55.0% | |
| GGTTGTGCCTCAGGCTGATA+GGG | - | chr4_2:1631214-1631233 | Msa0583180:intron | 55.0% | |
| !! | GGTCCTAAATGTTGGTGCCG+AGG | - | chr4_2:1632195-1632214 | Msa0583180:intron | 55.0% |
| CAGCCTCGGCACCAACATTT+AGG | + | chr4_2:1632201-1632220 | None:intergenic | 55.0% | |
| ATGTGGTCTATGGCGGTCCA+TGG | - | chr4_2:1632555-1632574 | Msa0583180:intron | 55.0% | |
| ACCCCCACTGATATCTGCCA+TGG | - | chr4_2:1632688-1632707 | Msa0583180:intron | 55.0% | |
| GCCATGGCAGATATCAGTGG+GGG | + | chr4_2:1632692-1632711 | None:intergenic | 55.0% | |
| GGCCATGGCAGATATCAGTG+GGG | + | chr4_2:1632693-1632712 | None:intergenic | 55.0% | |
| CGGCCATGGCAGATATCAGT+GGG | + | chr4_2:1632694-1632713 | None:intergenic | 55.0% | |
| TCGGCCATGGCAGATATCAG+TGG | + | chr4_2:1632695-1632714 | None:intergenic | 55.0% | |
| ! | AATGCCACTGGCCCACCTTT+TGG | - | chr4_2:1632834-1632853 | Msa0583180:intron | 55.0% |
| ! | ATGCCACTGGCCCACCTTTT+GGG | - | chr4_2:1632835-1632854 | Msa0583180:intron | 55.0% |
| TGACCAAAGAGTCCTCACGC+TGG | - | chr4_2:1632994-1633013 | Msa0583180:intron | 55.0% | |
| GACCAAAGAGTCCTCACGCT+GGG | - | chr4_2:1632995-1633014 | Msa0583180:intron | 55.0% | |
| CTTGTTGGCCGTCGTTGAGT+AGG | - | chr4_2:1634354-1634373 | Msa0583180:CDS | 55.0% | |
| GGCCAAACCCTACTCAACGA+CGG | + | chr4_2:1634365-1634384 | None:intergenic | 55.0% | |
| ! | CATGGCAGGGTCTTGGCTCT+CGG | + | chr4_2:1632581-1632600 | None:intergenic | 60.0% |
| ACAAAGCGACCGGCATGGCA+GGG | + | chr4_2:1632594-1632613 | None:intergenic | 60.0% | |
| TGACGGCGTCACAAAGCGAC+CGG | + | chr4_2:1632604-1632623 | None:intergenic | 60.0% | |
| TTAGGTGTGTTGGGCTCCGG+AGG | - | chr4_2:1632908-1632927 | Msa0583180:intron | 60.0% | |
| CTTAAGGCCTGCCTTGACCC+TGG | + | chr4_2:1632938-1632957 | None:intergenic | 60.0% | |
| CAGGGTCAAGGCAGGCCTTA+AGG | - | chr4_2:1632936-1632955 | Msa0583180:intron | 60.0% | |
| CTCCCAGCGTGAGGACTCTT+TGG | + | chr4_2:1633000-1633019 | None:intergenic | 60.0% | |
| AAGAGTCCTCACGCTGGGAG+CGG | - | chr4_2:1633000-1633019 | Msa0583180:intron | 60.0% | |
| TATATCCCGCTCCCAGCGTG+AGG | + | chr4_2:1633009-1633028 | None:intergenic | 60.0% | |
| ! | CATGCGGGTAGTGGTGTGCA+GGG | - | chr4_2:1633829-1633848 | Msa0583180:intron | 60.0% |
| ! | ATGCGGGTAGTGGTGTGCAG+GGG | - | chr4_2:1633830-1633849 | Msa0583180:intron | 60.0% |
| GGCCGTCGTTGAGTAGGGTT+TGG | - | chr4_2:1634360-1634379 | Msa0583180:CDS | 60.0% | |
| ! | AGGGTCTTGGCTCTCGGCCA+TGG | + | chr4_2:1632575-1632594 | None:intergenic | 65.0% |
| GAGCCAAGACCCTGCCATGC+CGG | - | chr4_2:1632582-1632601 | Msa0583180:intron | 65.0% | |
| CACAAAGCGACCGGCATGGC+AGG | + | chr4_2:1632595-1632614 | None:intergenic | 65.0% | |
| GCGTCACAAAGCGACCGGCA+TGG | + | chr4_2:1632599-1632618 | None:intergenic | 65.0% | |
| CAGCCCAAAAGGTGGGCCAG+TGG | + | chr4_2:1632841-1632860 | None:intergenic | 65.0% | |
| CCTTGACCCTGGTGAGCCTC+CGG | + | chr4_2:1632927-1632946 | None:intergenic | 65.0% | |
| AGGCTCACCAGGGTCAAGGC+AGG | - | chr4_2:1632928-1632947 | Msa0583180:intron | 65.0% | |
| AGAGTCCTCACGCTGGGAGC+GGG | - | chr4_2:1633001-1633020 | Msa0583180:intron | 65.0% | |
| CCTGCACACCACTACCCGCA+TGG | + | chr4_2:1633831-1633850 | None:intergenic | 65.0% | |
| ! | CCATGCGGGTAGTGGTGTGC+AGG | - | chr4_2:1633828-1633847 | Msa0583180:intron | 65.0% |
| CGACCGGCATGGCAGGGTCT+TGG | + | chr4_2:1632588-1632607 | None:intergenic | 70.0% | |
| TTGGGCTCCGGAGGCTCACC+AGG | - | chr4_2:1632917-1632936 | Msa0583180:intron | 70.0% | |
| TGGGCTCCGGAGGCTCACCA+GGG | - | chr4_2:1632918-1632937 | Msa0583180:intron | 70.0% | |
| CCGGAGGCTCACCAGGGTCA+AGG | - | chr4_2:1632924-1632943 | Msa0583180:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 1630728 | 1634712 | 1630728 | ID=Msa0583180;Name=Msa0583180 |
| chr4_2 | mRNA | 1630728 | 1634712 | 1630728 | ID=Msa0583180-mRNA-1;Parent=Msa0583180;Name=Msa0583180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=145|1|1|1|1|1|7|337|135 |
| chr4_2 | exon | 1630728 | 1631133 | 1630728 | ID=Msa0583180-mRNA-1:exon:441;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1631399 | 1631428 | 1631399 | ID=Msa0583180-mRNA-1:exon:440;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1633197 | 1633244 | 1633197 | ID=Msa0583180-mRNA-1:exon:439;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1633333 | 1633398 | 1633333 | ID=Msa0583180-mRNA-1:exon:438;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1634175 | 1634225 | 1634175 | ID=Msa0583180-mRNA-1:exon:437;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1634323 | 1634381 | 1634323 | ID=Msa0583180-mRNA-1:exon:436;Parent=Msa0583180-mRNA-1 |
| chr4_2 | exon | 1634483 | 1634712 | 1634483 | ID=Msa0583180-mRNA-1:exon:435;Parent=Msa0583180-mRNA-1 |
| chr4_2 | five_prime_UTR | 1634568 | 1634712 | 1634568 | ID=Msa0583180-mRNA-1:five_prime_utr;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1634483 | 1634567 | 1634483 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1634323 | 1634381 | 1634323 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1634175 | 1634225 | 1634175 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1633333 | 1633398 | 1633333 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1633197 | 1633244 | 1633197 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1631399 | 1631428 | 1631399 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | CDS | 1631065 | 1631133 | 1631065 | ID=Msa0583180-mRNA-1:cds;Parent=Msa0583180-mRNA-1 |
| chr4_2 | three_prime_UTR | 1630728 | 1631064 | 1630728 | ID=Msa0583180-mRNA-1:three_prime_utr;Parent=Msa0583180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
