AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684520 MtrunA17_Chr4g0032431 95.390 629 16 2 1 626 1 619 0.0 1208
Msa0684520 MtrunA17_Chr4g0076761 31.631 509 275 12 145 618 37 507 2.45e-61 213
Msa0684520 MtrunA17_Chr3g0115501 40.602 133 66 4 356 482 297 422 2.53e-16 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684520 AT3G12080.1 77.111 533 120 1 95 625 108 640 0.0 845
Msa0684520 AT3G12080.2 76.618 479 110 1 95 571 108 586 0.0 748
Msa0684520 AT5G39960.1 31.898 511 279 13 140 617 112 586 3.05e-59 209
Msa0684520 AT1G78010.1 33.533 167 97 5 356 522 320 472 4.53e-17 85.1

Find 158 sgRNAs with CRISPR-Local

Find 551 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAACTTACCGGCGCTTTA+TGG 0.166917 4_4:+47905107 Msa0684520:CDS
CGAGGGAGAGAGATGGATTT+TGG 0.174332 4_4:-47898544 None:intergenic
CTTCTTGACCTTGTTTGTTC+GGG 0.230960 4_4:+47901736 Msa0684520:CDS
TTATGCAGGTGTCTGAATTT+TGG 0.252199 4_4:+47900510 Msa0684520:CDS
ATTCCAATATCAGCTATATC+AGG 0.278422 4_4:+47901697 Msa0684520:CDS
GAAAATGGGAGTTGGGGTTT+TGG 0.280572 4_4:-47898467 None:intergenic
GTTTATATGGCCGATCATAT+TGG 0.285141 4_4:+47899773 Msa0684520:CDS
ATTCACCGGCGCTGAAATTC+GGG 0.285274 4_4:-47898588 None:intergenic
TTTATATGGCCGATCATATT+GGG 0.292903 4_4:+47899774 Msa0684520:CDS
CGTTCAAATGCGGGATTTCC+TGG 0.294529 4_4:+47905141 Msa0684520:CDS
GCTATTGATACTGAATTTAC+TGG 0.295189 4_4:+47902166 Msa0684520:CDS
TCTTCTTGACCTTGTTTGTT+CGG 0.316702 4_4:+47901735 Msa0684520:CDS
GTTACGAGGGACCGTTTATA+TGG 0.321880 4_4:+47899760 Msa0684520:CDS
CCTCTTGGGTTTACTCCTCT+TGG 0.327553 4_4:-47898933 None:intergenic
ATAAAGCGCCGGTAAGTTTC+AGG 0.332302 4_4:-47905105 None:intergenic
AAAATCACAAACTACTGTTA+TGG 0.340708 4_4:+47899846 Msa0684520:CDS
GATATAGCTGATATTGGAAT+TGG 0.341403 4_4:-47901694 None:intergenic
AATTCACCGGCGCTGAAATT+CGG 0.348846 4_4:-47898589 None:intergenic
GTCCCTGATATAGCTGATAT+TGG 0.355168 4_4:-47901700 None:intergenic
AGAAGCTTCGCTTACTTGAT+TGG 0.355390 4_4:+47903455 Msa0684520:CDS
CATTATTTAATCGTCTCGTT+GGG 0.374320 4_4:+47899563 Msa0684520:CDS
CAATGAATTACCAGAGGAAT+TGG 0.376865 4_4:+47898630 Msa0684520:CDS
AGTGTTGTGGAATGAGAAAA+TGG 0.382241 4_4:-47898482 None:intergenic
GTTCCAGCAATTTCAATTGT+TGG 0.384187 4_4:+47902052 Msa0684520:CDS
CTACCAACAATTGAAATTGC+TGG 0.387235 4_4:-47902055 None:intergenic
TGCTCTTGTCATTGAGGCCA+TGG 0.390813 4_4:+47903133 Msa0684520:CDS
CCACCTCGTGTCCTGGGAGG+AGG 0.391395 4_4:-47904863 None:intergenic
CTGCGCCACAAAAGCCGAAT+GGG 0.392579 4_4:-47905168 None:intergenic
TTCCATCTTATTGATACTGC+TGG 0.393997 4_4:+47903014 Msa0684520:CDS
GCTATATCAGGGACTGGAAC+TGG 0.396661 4_4:+47901709 Msa0684520:CDS
GAAGCTTCGCTTACTTGATT+GGG 0.397877 4_4:+47903456 Msa0684520:CDS
ATCCTTGGTAGAAGATTGTC+AGG 0.406509 4_4:-47899505 None:intergenic
AACTACTGTTATGGAAGATC+TGG 0.412261 4_4:+47899855 Msa0684520:CDS
GGAATGAGAAAATGGGAGTT+GGG 0.414503 4_4:-47898474 None:intergenic
TCTTCTTGCAGGCTGCTATA+AGG 0.414886 4_4:+47905040 Msa0684520:intron
GCTTGTCTCTCAATCATTGA+TGG 0.416305 4_4:-47899946 None:intergenic
TTCATTGTCGTCAACGGTGC+CGG 0.420260 4_4:-47898614 None:intergenic
AAGAAACAAACCTGGCCATC+TGG 0.421017 4_4:-47902190 None:intergenic
GCATTATTTAATCGTCTCGT+TGG 0.421033 4_4:+47899562 Msa0684520:CDS
TTATTGATACTGCTGGAATC+AGG 0.432717 4_4:+47903021 Msa0684520:CDS
CTCAATCATTGATGGCATCC+TGG 0.433593 4_4:-47899938 None:intergenic
AGCGGGAAAGGCAGCAGCGA+GGG 0.436819 4_4:-47898561 None:intergenic
CTACCAAGGATTGCTATTGT+TGG 0.442714 4_4:+47899517 Msa0684520:CDS
GAAAGAATTGAAGTGGAAAA+GGG 0.444169 4_4:-47898508 None:intergenic
CTAGAGAGGCAGCTGTTGCC+AGG 0.449493 4_4:+47899920 Msa0684520:CDS
GTTTATTCTACTGCTCTAGC+TGG 0.453196 4_4:+47903487 Msa0684520:CDS
GGAAAGAATTGAAGTGGAAA+AGG 0.461728 4_4:-47898509 None:intergenic
CATGGCTTGTATCACTGAAC+AGG 0.463425 4_4:+47903151 Msa0684520:CDS
TCAACCAGGAAAATGATAAC+AGG 0.466627 4_4:-47899991 None:intergenic
AATTCGGGGCGGAGCGGGAA+AGG 0.467683 4_4:-47898573 None:intergenic
AGAAGCAAAGGAAGTTGCGC+TGG 0.467989 4_4:+47898732 Msa0684520:CDS
AGAAGTGATGTCAAGGAAAC+GGG 0.470803 4_4:+47898902 Msa0684520:CDS
GCTGAAATTCGGGGCGGAGC+GGG 0.470988 4_4:-47898578 None:intergenic
AGGACAACTGTAGCCTCAGC+TGG 0.475841 4_4:+47903047 Msa0684520:CDS
ATCGTGCATTTCGTGCTATT+AGG 0.481079 4_4:+47903096 Msa0684520:CDS
TGTTGTTGCTCTTGTCATTG+AGG 0.482868 4_4:+47903127 Msa0684520:CDS
GCAATTGTGGTGGATGAGCC+TGG 0.491923 4_4:+47899736 Msa0684520:CDS
TTCAGCGCCGGTGAATTCTC+CGG 0.494898 4_4:+47898595 Msa0684520:CDS
TTGGGGAGATCATGAATTCA+TGG 0.494938 4_4:+47899792 Msa0684520:CDS
TGGAATGAGAAAATGGGAGT+TGG 0.498532 4_4:-47898475 None:intergenic
AATATGATCGGCCATATAAA+CGG 0.499928 4_4:-47899771 None:intergenic
AATGCTGACTTGCCAACGTT+CGG 0.500836 4_4:-47899544 None:intergenic
GAGAAGTGATGTCAAGGAAA+CGG 0.503039 4_4:+47898901 Msa0684520:CDS
AGAGCAGTAGAATAAACTAC+TGG 0.504818 4_4:-47903481 None:intergenic
GATAATTCAACCAATTCCTC+TGG 0.508908 4_4:-47898640 None:intergenic
GGGGTGGTGTAGTAAGAGAT+AGG 0.509089 4_4:-47898445 None:intergenic
AAGCAGCTGCGTTCAAATGC+GGG 0.509783 4_4:+47905132 Msa0684520:CDS
TTCCAGCAGTATCAATAAGA+TGG 0.510717 4_4:-47903016 None:intergenic
TCACGTGTAGTGCCACTGAT+GGG 0.516984 4_4:-47902142 None:intergenic
TTGACAAAGAACACAAATGT+AGG 0.519280 4_4:-47905066 None:intergenic
AGCTGCCTCTCTAGAGGCAA+GGG 0.519693 4_4:-47899911 None:intergenic
AACATCAACGTCATCGTCAT+CGG 0.519733 4_4:-47898695 None:intergenic
GGTGGTGTAGTAAGAGATAG+GGG 0.519870 4_4:-47898443 None:intergenic
CTGATGTGGAGATTGCTGAT+TGG 0.522257 4_4:+47900417 Msa0684520:CDS
ATACTGCTGGAATCAGGAAA+AGG 0.527410 4_4:+47903027 Msa0684520:CDS
CGCTGAAATTCGGGGCGGAG+CGG 0.527454 4_4:-47898579 None:intergenic
TATTAGTACAACCATCGGTA+TGG 0.528394 4_4:+47899879 Msa0684520:CDS
TGCCGCTAGTGAAGTCGAAA+AGG 0.533764 4_4:+47904775 Msa0684520:CDS
AGATCATGAATTCATGGTGG+TGG 0.535411 4_4:+47899798 Msa0684520:CDS
AGATGAGAGAAGTGATGTCA+AGG 0.535434 4_4:+47898895 Msa0684520:CDS
AAACGGTCCCTCGTAACTCC+AGG 0.539185 4_4:-47899754 None:intergenic
TCTTCTTCAACAAGATTCTG+TGG 0.540464 4_4:-47902022 None:intergenic
TCCACGGAAAAGAATTATGC+AGG 0.541274 4_4:+47900496 Msa0684520:CDS
TTTATTCTACTGCTCTAGCT+GGG 0.544938 4_4:+47903488 Msa0684520:CDS
GAATTCATGGTGGTGGACAC+TGG 0.545232 4_4:+47899805 Msa0684520:CDS
ATCACGTGTAGTGCCACTGA+TGG 0.547783 4_4:-47902143 None:intergenic
TATATTGAATCAAGTAGTGC+GGG 0.547969 4_4:+47904823 Msa0684520:CDS
CTTCCAACAATAGCAATCCT+TGG 0.551635 4_4:-47899520 None:intergenic
TGGTAATTCATTGTCGTCAA+CGG 0.553028 4_4:-47898620 None:intergenic
CAGCTGCCTCTCTAGAGGCA+AGG 0.553340 4_4:-47899912 None:intergenic
TGGAAAAGGGGAGAGTGTTG+TGG 0.556968 4_4:-47898495 None:intergenic
CTCTGTTGTACTTCCAGCTG+AGG 0.557066 4_4:-47903060 None:intergenic
ATATCAGCTATATCAGGGAC+TGG 0.557388 4_4:+47901703 Msa0684520:CDS
ATTGTTGGTAGACCAAATGT+TGG 0.558878 4_4:+47902067 Msa0684520:CDS
ATTTACTGGACCAGATGGCC+AGG 0.560626 4_4:+47902180 Msa0684520:CDS
GAGACAAGCGATTGCAGCTG+TGG 0.563565 4_4:+47899960 Msa0684520:CDS
GCAGCAGCGAGGGAGAGAGA+TGG 0.564078 4_4:-47898551 None:intergenic
GGGTGGTGTAGTAAGAGATA+GGG 0.566452 4_4:-47898444 None:intergenic
TTCTTGACCTTGTTTGTTCG+GGG 0.568021 4_4:+47901737 Msa0684520:CDS
AAGGAGAGATCAAGAAGACT+TGG 0.568230 4_4:+47904794 Msa0684520:CDS
AGCGCTCGAGCGAGAAGCAA+AGG 0.569581 4_4:+47898720 Msa0684520:CDS
GTAGGGAAACAAGGCAATTG+TGG 0.571734 4_4:+47899723 Msa0684520:intron
GCTGCGCCACAAAAGCCGAA+TGG 0.572990 4_4:-47905169 None:intergenic
CAATTACCTGACCATCAACC+AGG 0.573204 4_4:-47900005 None:intergenic
AGGTCTAACAGCAGCTGATG+TGG 0.573463 4_4:+47900403 Msa0684520:CDS
AACGGTGCCGGAGAATTCAC+CGG 0.573499 4_4:-47898602 None:intergenic
AAAGAATTGAAGTGGAAAAG+GGG 0.578552 4_4:-47898507 None:intergenic
TCCGCCCCGAATTTCAGCGC+CGG 0.580892 4_4:+47898583 Msa0684520:CDS
GAGCGGGAAAGGCAGCAGCG+AGG 0.587127 4_4:-47898562 None:intergenic
CATGATCTCCCCAATATGAT+CGG 0.588215 4_4:-47899783 None:intergenic
TTCCAATATCAGCTATATCA+GGG 0.592136 4_4:+47901698 Msa0684520:CDS
GCTGCTTCTCCATAAAGCGC+CGG 0.593937 4_4:-47905116 None:intergenic
TTCGGGGTTACAGAAAGTTG+AGG 0.594089 4_4:+47901753 Msa0684520:CDS
ACTGAATTTACTGGACCAGA+TGG 0.596187 4_4:+47902175 Msa0684520:CDS
AGTACAACCATCGGTATGGA+TGG 0.602800 4_4:+47899883 Msa0684520:CDS
GTGTTGTGGAATGAGAAAAT+GGG 0.605667 4_4:-47898481 None:intergenic
GAATGAGAAAATGGGAGTTG+GGG 0.606189 4_4:-47898473 None:intergenic
TGCGCCACAAAAGCCGAATG+GGG 0.608074 4_4:-47905167 None:intergenic
TTTGAATGCACTGGTTGGTG+AGG 0.609725 4_4:+47902102 Msa0684520:CDS
GTGTAGTAAGAGATAGGGGT+GGG 0.611661 4_4:-47898439 None:intergenic
GGCAACAGCTGCCTCTCTAG+AGG 0.612746 4_4:-47899917 None:intergenic
GAAGCAGCTGCGTTCAAATG+CGG 0.613645 4_4:+47905131 Msa0684520:CDS
TTATATGGCCGATCATATTG+GGG 0.614014 4_4:+47899775 Msa0684520:CDS
TCCCTGACAATCTTCTACCA+AGG 0.614840 4_4:+47899503 Msa0684520:CDS
ATTATTTAATCGTCTCGTTG+GGG 0.616931 4_4:+47899564 Msa0684520:CDS
TCTGTAACCCCGAACAAACA+AGG 0.618188 4_4:-47901744 None:intergenic
TTAACAAGTGCGAATCTCCA+CGG 0.620781 4_4:+47900480 Msa0684520:CDS
CTATATTGAATCAAGTAGTG+CGG 0.622529 4_4:+47904822 Msa0684520:CDS
AAGCCTCCTCCCAGGACACG+AGG 0.622603 4_4:+47904860 Msa0684520:CDS
GTGTGATCGTTGTAAACAAG+TGG 0.623122 4_4:+47903374 Msa0684520:CDS
CTGGATATTAGTACAACCAT+CGG 0.631405 4_4:+47899874 Msa0684520:CDS
TTTCCACCTCGTGTCCTGGG+AGG 0.635703 4_4:-47904866 None:intergenic
TTCACCGGCGCTGAAATTCG+GGG 0.638154 4_4:-47898587 None:intergenic
CTGTTCAGTGATACAAGCCA+TGG 0.639138 4_4:-47903150 None:intergenic
CCTCCTCCCAGGACACGAGG+TGG 0.641204 4_4:+47904863 Msa0684520:CDS
TATTCCCCTTGCCTCTAGAG+AGG 0.646020 4_4:+47899906 Msa0684520:CDS
GCGTGTTTACTATTGCACTC+AGG 0.647063 4_4:+47904895 Msa0684520:CDS
AGGACTACAAGATAGCTGAA+AGG 0.648241 4_4:+47903329 Msa0684520:intron
GGGAATACCATCCATACCGA+TGG 0.648577 4_4:-47899890 None:intergenic
GCGCCACAAAAGCCGAATGG+GGG 0.663468 4_4:-47905166 None:intergenic
GGGAAACAAGGCAATTGTGG+TGG 0.663597 4_4:+47899726 Msa0684520:intron
GGATGAGCCTGGAGTTACGA+GGG 0.666716 4_4:+47899747 Msa0684520:CDS
TGGATGAGCCTGGAGTTACG+AGG 0.670954 4_4:+47899746 Msa0684520:CDS
GCTGCCTCTCTAGAGGCAAG+GGG 0.673323 4_4:-47899910 None:intergenic
TGTGATCGTTGTAAACAAGT+GGG 0.679644 4_4:+47903375 Msa0684520:CDS
AAGTGAGAAAGAAATGCCAT+TGG 0.684430 4_4:-47898409 None:intergenic
TTCATGGTGGTGGACACTGG+TGG 0.685487 4_4:+47899808 Msa0684520:CDS
CACGTGTAGTGCCACTGATG+GGG 0.686204 4_4:-47902141 None:intergenic
ATTGTTGGAAGACCGAACGT+TGG 0.687597 4_4:+47899532 Msa0684520:CDS
GGTGTAGTAAGAGATAGGGG+TGG 0.690143 4_4:-47898440 None:intergenic
ACAATAGTCAGCCCCATCAG+TGG 0.691846 4_4:+47902130 Msa0684520:CDS
ACAAAGAACACAAATGTAGG+CGG 0.698786 4_4:-47905063 None:intergenic
CCAAGAGGAGTAAACCCAAG+AGG 0.704933 4_4:+47898933 Msa0684520:CDS
CTCAGCTGGAAGTACAACAG+AGG 0.713750 4_4:+47903061 Msa0684520:CDS
TGACGACAATGAATTACCAG+AGG 0.728995 4_4:+47898624 Msa0684520:CDS
ACCGGCGCTGAAATTCGGGG+CGG 0.730646 4_4:-47898584 None:intergenic
GGGAGATCATGAATTCATGG+TGG 0.762942 4_4:+47899795 Msa0684520:CDS
TCCTTGGTAGAAGATTGTCA+GGG 0.767046 4_4:-47899504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTATAATCGATTT+TGG + chr4_4:47901310-47901329 Msa0684520:intron 10.0%
!! AAAATTCAATATATTGATAA+TGG + chr4_4:47902251-47902270 Msa0684520:intron 10.0%
!! AAAAAAAATCTTAATGATTA+TGG - chr4_4:47903285-47903304 None:intergenic 10.0%
!! TCAATTAAATATACAAATTT+AGG - chr4_4:47903747-47903766 None:intergenic 10.0%
!! ATAATTTACCATAAAAATTG+AGG + chr4_4:47899368-47899387 Msa0684520:intron 15.0%
!! TGATTAATTTAATTATGATG+TGG + chr4_4:47900846-47900865 Msa0684520:intron 15.0%
!! AGAAGATAATTCAATATTTA+TGG - chr4_4:47901787-47901806 None:intergenic 15.0%
!! AACTATTTCATATATCTTAA+AGG + chr4_4:47903309-47903328 Msa0684520:intron 15.0%
!!! ATTTTTTTGTTATAAAAGAG+AGG - chr4_4:47904082-47904101 None:intergenic 15.0%
!! CTAAATTAAAGATTTATGAT+AGG - chr4_4:47904183-47904202 None:intergenic 15.0%
!!! TTATTATTGTTTTGAACAAA+AGG + chr4_4:47904744-47904763 Msa0684520:intron 15.0%
!! TTGTATTGAAATAAAATATG+TGG - chr4_4:47905592-47905611 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAG+TGG - chr4_4:47899053-47899072 None:intergenic 20.0%
!! AACTAGTTACAAACAAAATT+TGG - chr4_4:47899397-47899416 None:intergenic 20.0%
!! TGAAGAGATTGAAATAAATT+AGG + chr4_4:47899443-47899462 Msa0684520:intron 20.0%
!! GAAGAGATTGAAATAAATTA+GGG + chr4_4:47899444-47899463 Msa0684520:intron 20.0%
!! AATAAGAATCAAGATAAAGT+AGG - chr4_4:47900080-47900099 None:intergenic 20.0%
!!! AATTTAGCTCATTTTTTACT+AGG + chr4_4:47900949-47900968 Msa0684520:intron 20.0%
!!! TTGTTTTACAGTATTGATTT+TGG + chr4_4:47901282-47901301 Msa0684520:intron 20.0%
!! TTTGGTTAATATTATGTTTG+AGG + chr4_4:47901328-47901347 Msa0684520:intron 20.0%
!!! AAGTAATTTTGTAGTAAACT+TGG + chr4_4:47901385-47901404 Msa0684520:intron 20.0%
!! ATGAATCAACAATTTATCAT+TGG - chr4_4:47901894-47901913 None:intergenic 20.0%
!!! TGATAAATTGTTGATTCATT+TGG + chr4_4:47901895-47901914 Msa0684520:intron 20.0%
!!! TTCATTTTATGCTATACAAT+AGG + chr4_4:47901997-47902016 Msa0684520:intron 20.0%
!!! ATTGTTAAGCTTTTAGAATT+TGG + chr4_4:47902948-47902967 Msa0684520:intron 20.0%
!!! TTTTAATTGTGGTTACAATA+AGG + chr4_4:47903212-47903231 Msa0684520:intron 20.0%
!! AATACAAATTTGAACATACA+TGG + chr4_4:47903712-47903731 Msa0684520:intron 20.0%
!!! TTTTTTTTGAAGGACTAAAA+TGG + chr4_4:47904367-47904386 Msa0684520:intron 20.0%
!! AAAATTGAAACAAAAAACAG+AGG - chr4_4:47905269-47905288 None:intergenic 20.0%
!! TGTTATACAAAGAACTAATA+GGG - chr4_4:47905489-47905508 None:intergenic 20.0%
!!! TGTGATGAAAAATTTTCTTT+AGG - chr4_4:47905805-47905824 None:intergenic 20.0%
!! GATAAATTTACTAGTTATTG+AGG - chr4_4:47906111-47906130 None:intergenic 20.0%
!!! AATTTATCTTTAGAAGTAGT+TGG + chr4_4:47906123-47906142 Msa0684520:intron 20.0%
!!! ATTTATCTTTAGAAGTAGTT+GGG + chr4_4:47906124-47906143 Msa0684520:intron 20.0%
!! ATACTAACAATTTTCCTCTT+GGG - chr4_4:47898950-47898969 None:intergenic 25.0%
!! TATACTAACAATTTTCCTCT+TGG - chr4_4:47898951-47898970 None:intergenic 25.0%
! ACATTGAATAGAGTAGAATT+TGG - chr4_4:47898986-47899005 None:intergenic 25.0%
!!! GAATTTTCGTCTATTTTGAA+TGG + chr4_4:47899476-47899495 Msa0684520:intron 25.0%
! AAAATTAATTTCCCCAAAAC+AGG - chr4_4:47899637-47899656 None:intergenic 25.0%
!!! GTTTTGGGGAAATTAATTTT+TGG + chr4_4:47899637-47899656 Msa0684520:intron 25.0%
!!! TTTTGGAAATTTCGATGTTT+TGG + chr4_4:47899654-47899673 Msa0684520:intron 25.0%
!!! ATAGTTGTTTCTTTTCTGTA+GGG + chr4_4:47899706-47899725 Msa0684520:intron 25.0%
! AAAATCACAAACTACTGTTA+TGG + chr4_4:47899846-47899865 Msa0684520:CDS 25.0%
!!! TTTTGATGGTTATCAATTAC+CGG + chr4_4:47900158-47900177 Msa0684520:intron 25.0%
! TTTCTCCATTGAATTATTTG+TGG + chr4_4:47900223-47900242 Msa0684520:intron 25.0%
! TAATTATCATTACTGTCTTC+AGG - chr4_4:47900371-47900390 None:intergenic 25.0%
! TAATGATAATTATGCTGAAC+AGG + chr4_4:47900379-47900398 Msa0684520:intron 25.0%
! GGTTAATGTTAAACTAAGTT+TGG + chr4_4:47900867-47900886 Msa0684520:intron 25.0%
!! GGTTAATTCAACTTACATTT+TGG + chr4_4:47900888-47900907 Msa0684520:intron 25.0%
!!! AGCTAAATTTTAACGCATAA+AGG - chr4_4:47900938-47900957 None:intergenic 25.0%
! ATAAAGAAACTTCATTTCTC+TGG + chr4_4:47901111-47901130 Msa0684520:intron 25.0%
!! GGTATTGAAAGCATAAAATA+AGG - chr4_4:47901536-47901555 None:intergenic 25.0%
!! ATTTTATGCTTTCAATACCA+TGG + chr4_4:47901537-47901556 Msa0684520:intron 25.0%
! ATCAACAATTTATCATTGGT+AGG - chr4_4:47901890-47901909 None:intergenic 25.0%
! AGTGTAAGTAAGAAAATCAA+GGG - chr4_4:47901978-47901997 None:intergenic 25.0%
! AAGTGTAAGTAAGAAAATCA+AGG - chr4_4:47901979-47901998 None:intergenic 25.0%
! CATTCAAAGAAAAAAGTTAC+CGG - chr4_4:47902227-47902246 None:intergenic 25.0%
! TGTACTCATTTCCATTATTT+GGG - chr4_4:47902300-47902319 None:intergenic 25.0%
! TTGTACTCATTTCCATTATT+TGG - chr4_4:47902301-47902320 None:intergenic 25.0%
! AAACCACTCATAATACAAAT+AGG + chr4_4:47902400-47902419 Msa0684520:intron 25.0%
! AACCACTCATAATACAAATA+GGG + chr4_4:47902401-47902420 Msa0684520:intron 25.0%
!!! ATAAGGCTTTTAATTGGTTA+GGG - chr4_4:47902629-47902648 None:intergenic 25.0%
!!! TATAAGGCTTTTAATTGGTT+AGG - chr4_4:47902630-47902649 None:intergenic 25.0%
!! TATGGTATAAGGCTTTTAAT+TGG - chr4_4:47902635-47902654 None:intergenic 25.0%
!! CTAGTTAATTTGGTTAAATG+CGG - chr4_4:47902756-47902775 None:intergenic 25.0%
! CAAATAGTTGCTAGTTAATT+TGG - chr4_4:47902766-47902785 None:intergenic 25.0%
! CAAATTAACTAGCAACTATT+TGG + chr4_4:47902764-47902783 Msa0684520:intron 25.0%
! AACAATTCACTATTACAATC+TGG - chr4_4:47902934-47902953 None:intergenic 25.0%
!! AAATGTTGACAAGTAAGTTT+TGG + chr4_4:47903513-47903532 Msa0684520:intron 25.0%
! GAAAATCTTTGATTCATTGA+AGG + chr4_4:47903539-47903558 Msa0684520:intron 25.0%
!! ATTGTTTTCTAGGCAAAATT+GGG - chr4_4:47903650-47903669 None:intergenic 25.0%
!! AATTGTTTTCTAGGCAAAAT+TGG - chr4_4:47903651-47903670 None:intergenic 25.0%
! CAAATATGTATGCTTAAGAA+GGG - chr4_4:47903677-47903696 None:intergenic 25.0%
! ACAAATATGTATGCTTAAGA+AGG - chr4_4:47903678-47903697 None:intergenic 25.0%
! ATTCGTTACCTTGAATTTAT+GGG - chr4_4:47903863-47903882 None:intergenic 25.0%
!! CGAATCTGTATTTTATTGAA+TGG + chr4_4:47903878-47903897 Msa0684520:intron 25.0%
! TTGTTATAAAAGAGAGGATA+GGG - chr4_4:47904076-47904095 None:intergenic 25.0%
!! TTTGTTATAAAAGAGAGGAT+AGG - chr4_4:47904077-47904096 None:intergenic 25.0%
! TATGATAGGATACTAGATTT+GGG - chr4_4:47904169-47904188 None:intergenic 25.0%
! TTATGATAGGATACTAGATT+TGG - chr4_4:47904170-47904189 None:intergenic 25.0%
!!! AATTTAGTTCTCCAAAGATT+AGG + chr4_4:47904196-47904215 Msa0684520:intron 25.0%
!!! ATTTAGTTCTCCAAAGATTA+GGG + chr4_4:47904197-47904216 Msa0684520:intron 25.0%
! TAGAGACAAAAATCATTTGA+GGG - chr4_4:47904251-47904270 None:intergenic 25.0%
! TTAGAGACAAAAATCATTTG+AGG - chr4_4:47904252-47904271 None:intergenic 25.0%
!! AGTCTTTAAAGATGTGAATT+TGG + chr4_4:47904275-47904294 Msa0684520:intron 25.0%
! GTGAAAATTTGTATCTTTGT+AGG + chr4_4:47904297-47904316 Msa0684520:intron 25.0%
!!! CTGGTAACAATTTTTTTTGA+AGG + chr4_4:47904357-47904376 Msa0684520:intron 25.0%
! AAACTCTAAATTTGATTCTC+TGG - chr4_4:47904407-47904426 None:intergenic 25.0%
!! AAATTTCCTTTGTCATTTCT+GGG + chr4_4:47904469-47904488 Msa0684520:intron 25.0%
!!! TTTTTGGGATCTTTTCTATT+TGG + chr4_4:47904534-47904553 Msa0684520:intron 25.0%
!!! TTTTGGGATCTTTTCTATTT+GGG + chr4_4:47904535-47904554 Msa0684520:intron 25.0%
!!! TGTTTTTTTTTTCCTTCTTC+TGG + chr4_4:47904571-47904590 Msa0684520:intron 25.0%
! ACAATAAAAAATATCAGACC+TGG - chr4_4:47904691-47904710 None:intergenic 25.0%
! AGAAAAATGGAAAAAGATGA+AGG + chr4_4:47905195-47905214 Msa0684520:CDS 25.0%
! GTCAGTATTTATTTAAGTGT+TGG + chr4_4:47905217-47905236 Msa0684520:intron 25.0%
! ATAGGGAAAAGACTAATAAA+TGG - chr4_4:47905472-47905491 None:intergenic 25.0%
! GTGTTATACAAAGAACTAAT+AGG - chr4_4:47905490-47905509 None:intergenic 25.0%
!!! CATTTTAGTGTTAAACAATG+AGG + chr4_4:47905651-47905670 Msa0684520:intron 25.0%
!!! TGATTTGCTTACAGAAAAAA+AGG + chr4_4:47905771-47905790 Msa0684520:intron 25.0%
!! GACATTTTATCATATAGAAG+AGG + chr4_4:47905861-47905880 Msa0684520:intron 25.0%
! AATATTATCATCCAAACTTC+TGG - chr4_4:47906007-47906026 None:intergenic 25.0%
!!! ATCCTTTTGGTAATTTTAGT+GGG + chr4_4:47906046-47906065 Msa0684520:intron 25.0%
! ATTTCAAAGTTTGTAGTTTG+AGG + chr4_4:47906070-47906089 Msa0684520:intron 25.0%
AAAGAATTGAAGTGGAAAAG+GGG - chr4_4:47898510-47898529 None:intergenic 30.0%
GAAAGAATTGAAGTGGAAAA+GGG - chr4_4:47898511-47898530 None:intergenic 30.0%
!!! ATGGATTTTGGTTGAGAAAA+GGG - chr4_4:47898535-47898554 None:intergenic 30.0%
ACTAGTATGAAACACTAACT+CGG + chr4_4:47899012-47899031 Msa0684520:intron 30.0%
!! ATTATTAGTGGTGTCATGTT+CGG - chr4_4:47899041-47899060 None:intergenic 30.0%
CCTAAATTCTTTCACTTTGT+AGG - chr4_4:47899099-47899118 None:intergenic 30.0%
CCTACAAAGTGAAAGAATTT+AGG + chr4_4:47899096-47899115 Msa0684520:intron 30.0%
TCTAAATTTCATGTGCTAAC+TGG + chr4_4:47899124-47899143 Msa0684520:intron 30.0%
CATTATTTAATCGTCTCGTT+GGG + chr4_4:47899563-47899582 Msa0684520:CDS 30.0%
ATTATTTAATCGTCTCGTTG+GGG + chr4_4:47899564-47899583 Msa0684520:CDS 30.0%
!!! TTATTGATTCTGTCCTGTTT+TGG + chr4_4:47899621-47899640 Msa0684520:intron 30.0%
!!! TATTGATTCTGTCCTGTTTT+GGG + chr4_4:47899622-47899641 Msa0684520:intron 30.0%
GAAAAGAAACAACTATCGTA+AGG - chr4_4:47899702-47899721 None:intergenic 30.0%
!!! GATAGTTGTTTCTTTTCTGT+AGG + chr4_4:47899705-47899724 Msa0684520:intron 30.0%
AATATGATCGGCCATATAAA+CGG - chr4_4:47899774-47899793 None:intergenic 30.0%
TTTATATGGCCGATCATATT+GGG + chr4_4:47899774-47899793 Msa0684520:CDS 30.0%
AGATAAAGTAGGTACATACA+TGG - chr4_4:47900069-47900088 None:intergenic 30.0%
!!! GCGATTTTTACTTGTTTTGA+TGG + chr4_4:47900144-47900163 Msa0684520:intron 30.0%
TGGTACCACAAATAATTCAA+TGG - chr4_4:47900231-47900250 None:intergenic 30.0%
! ATATCAAGTTCTAGTCCTAA+GGG - chr4_4:47900664-47900683 None:intergenic 30.0%
! TATATCAAGTTCTAGTCCTA+AGG - chr4_4:47900665-47900684 None:intergenic 30.0%
TACTGTCAAATTCATGGATA+CGG + chr4_4:47900708-47900727 Msa0684520:intron 30.0%
CCAACATAGTATATAATCGA+CGG - chr4_4:47900787-47900806 None:intergenic 30.0%
AACTATTAAGAGGAAACATG+AGG - chr4_4:47900980-47900999 None:intergenic 30.0%
TTCTCAAGCAAACTATTAAG+AGG - chr4_4:47900990-47901009 None:intergenic 30.0%
TTGCTTGAGAAATTGTATGT+AGG + chr4_4:47900999-47901018 Msa0684520:intron 30.0%
TGCTTGAGAAATTGTATGTA+GGG + chr4_4:47901000-47901019 Msa0684520:intron 30.0%
TTTGCACTTCTAAACTAGAA+TGG + chr4_4:47901442-47901461 Msa0684520:intron 30.0%
AAAATCAAGTTTGTCCTCAA+TGG - chr4_4:47901474-47901493 None:intergenic 30.0%
ATTAGAACATATGACACTTG+GGG - chr4_4:47901632-47901651 None:intergenic 30.0%
GATTAGAACATATGACACTT+GGG - chr4_4:47901633-47901652 None:intergenic 30.0%
TGATTAGAACATATGACACT+TGG - chr4_4:47901634-47901653 None:intergenic 30.0%
GCTATGGTTAATGATATATC+AGG + chr4_4:47901665-47901684 Msa0684520:intron 30.0%
GATATAGCTGATATTGGAAT+TGG - chr4_4:47901697-47901716 None:intergenic 30.0%
ATTCCAATATCAGCTATATC+AGG + chr4_4:47901697-47901716 Msa0684520:CDS 30.0%
TTCCAATATCAGCTATATCA+GGG + chr4_4:47901698-47901717 Msa0684520:CDS 30.0%
CATTGACAATGAGTAACTTT+AGG + chr4_4:47901815-47901834 Msa0684520:intron 30.0%
GATACTTTATATTGTGTAGC+AGG + chr4_4:47901839-47901858 Msa0684520:intron 30.0%
CATTAAAACAAATTGATCCC+TGG - chr4_4:47901944-47901963 None:intergenic 30.0%
GCTATTGATACTGAATTTAC+TGG + chr4_4:47902166-47902185 Msa0684520:CDS 30.0%
!!! CGGTAACTTTTTTCTTTGAA+TGG + chr4_4:47902225-47902244 Msa0684520:intron 30.0%
! ATAATGGAAAAGAGTACATG+TGG + chr4_4:47902267-47902286 Msa0684520:intron 30.0%
! ATAATGGAAATGAGTACAAG+TGG + chr4_4:47902302-47902321 Msa0684520:intron 30.0%
ACTAAGGACACAGAAAATAA+AGG + chr4_4:47902338-47902357 Msa0684520:intron 30.0%
AACCCTATTTGTATTATGAG+TGG - chr4_4:47902406-47902425 None:intergenic 30.0%
TGCAAAGTCAAAACATTTCT+TGG - chr4_4:47902457-47902476 None:intergenic 30.0%
!! TAAGGCTTTTAATTGGTTAG+GGG - chr4_4:47902628-47902647 None:intergenic 30.0%
! CTATAGCTCTATATGGTATA+AGG - chr4_4:47902646-47902665 None:intergenic 30.0%
TAAACATCATAAGTAGTCAC+TGG - chr4_4:47902811-47902830 None:intergenic 30.0%
!!! CACAGATCTGTTTTTAATTG+TGG + chr4_4:47903201-47903220 Msa0684520:intron 30.0%
CTGAAAGGATAGAAAAAGAA+GGG + chr4_4:47903344-47903363 Msa0684520:CDS 30.0%
! GAAGGGATAAATTGTTTTCT+AGG - chr4_4:47903660-47903679 None:intergenic 30.0%
TGATAGAACCCATAAATTCA+AGG + chr4_4:47903852-47903871 Msa0684520:intron 30.0%
GATTCGTTACCTTGAATTTA+TGG - chr4_4:47903864-47903883 None:intergenic 30.0%
TGGTGAAAATGCAAAAGAAA+TGG + chr4_4:47903927-47903946 Msa0684520:intron 30.0%
TGTTAGGATACTTTATTCTC+TGG - chr4_4:47903999-47904018 None:intergenic 30.0%
TGTTATAAAAGAGAGGATAG+GGG - chr4_4:47904075-47904094 None:intergenic 30.0%
GATGACATTATAGTCTTTGA+AGG + chr4_4:47904328-47904347 Msa0684520:intron 30.0%
! ATTTGATTCTCTGGAAAGTA+GGG - chr4_4:47904398-47904417 None:intergenic 30.0%
! AATTTGATTCTCTGGAAAGT+AGG - chr4_4:47904399-47904418 None:intergenic 30.0%
TACTAGTATTTCTTGATGTG+TGG + chr4_4:47904440-47904459 Msa0684520:intron 30.0%
! GAAATTTCCTTTGTCATTTC+TGG + chr4_4:47904468-47904487 Msa0684520:intron 30.0%
! AATTTCCTTTGTCATTTCTG+GGG + chr4_4:47904470-47904489 Msa0684520:intron 30.0%
TGGAAATGAACTTAAGAACT+TGG + chr4_4:47904508-47904527 Msa0684520:intron 30.0%
!!! TTAAGAACTTGGCTGTTTTT+GGG + chr4_4:47904519-47904538 Msa0684520:intron 30.0%
!! GATCTTTTCTATTTGGGTTT+GGG + chr4_4:47904541-47904560 Msa0684520:intron 30.0%
GTTAAAATTACGACTTATCC+AGG + chr4_4:47904670-47904689 Msa0684520:intron 30.0%
CTATATTGAATCAAGTAGTG+CGG + chr4_4:47904822-47904841 Msa0684520:CDS 30.0%
TATATTGAATCAAGTAGTGC+GGG + chr4_4:47904823-47904842 Msa0684520:CDS 30.0%
TTGACAAAGAACACAAATGT+AGG - chr4_4:47905069-47905088 None:intergenic 30.0%
!! AACTTTTTCCTGAAACTTAC+CGG + chr4_4:47905097-47905116 Msa0684520:CDS 30.0%
ATGCTCTTTATCAACTAAGT+GGG - chr4_4:47905401-47905420 None:intergenic 30.0%
AAAAGACTAATAAATGGCCT+TGG - chr4_4:47905466-47905485 None:intergenic 30.0%
TAGCTATAAAATTGCAGATG+CGG - chr4_4:47905630-47905649 None:intergenic 30.0%
AAGCAAATCACATATACACA+GGG - chr4_4:47905761-47905780 None:intergenic 30.0%
TAAGCAAATCACATATACAC+AGG - chr4_4:47905762-47905781 None:intergenic 30.0%
TTACAGAAAAAAAGGTGACA+AGG + chr4_4:47905779-47905798 Msa0684520:intron 30.0%
! TAGCTGATATCAATTTTCGA+CGG - chr4_4:47905828-47905847 None:intergenic 30.0%
! TTTTATCATATAGAAGAGGC+TGG + chr4_4:47905865-47905884 Msa0684520:intron 30.0%
ACTAACCTTGGTTAATTTCA+GGG - chr4_4:47905958-47905977 None:intergenic 30.0%
TACTAACCTTGGTTAATTTC+AGG - chr4_4:47905959-47905978 None:intergenic 30.0%
!! GATCCTTTTGGTAATTTTAG+TGG + chr4_4:47906045-47906064 Msa0684520:intron 30.0%
GTGTTGTGGAATGAGAAAAT+GGG - chr4_4:47898484-47898503 None:intergenic 35.0%
AGTGTTGTGGAATGAGAAAA+TGG - chr4_4:47898485-47898504 None:intergenic 35.0%
GGAAAGAATTGAAGTGGAAA+AGG - chr4_4:47898512-47898531 None:intergenic 35.0%
!!! TGGATTTTGGTTGAGAAAAG+GGG - chr4_4:47898534-47898553 None:intergenic 35.0%
!!! GATGGATTTTGGTTGAGAAA+AGG - chr4_4:47898536-47898555 None:intergenic 35.0%
TGGTAATTCATTGTCGTCAA+CGG - chr4_4:47898623-47898642 None:intergenic 35.0%
CAATGAATTACCAGAGGAAT+TGG + chr4_4:47898630-47898649 Msa0684520:CDS 35.0%
GATAATTCAACCAATTCCTC+TGG - chr4_4:47898643-47898662 None:intergenic 35.0%
GGAATTGGTTGAATTATCAG+AGG + chr4_4:47898645-47898664 Msa0684520:intron 35.0%
!!! TTATCTCGCGTTTTGACTAT+CGG + chr4_4:47898769-47898788 Msa0684520:CDS 35.0%
CATGTCAATGATTGTGTTTC+TGG - chr4_4:47899197-47899216 None:intergenic 35.0%
!! ACACTTTTGATGAGAAGTGT+GGG + chr4_4:47899314-47899333 Msa0684520:intron 35.0%
! TTTGGCTGCCTCAATTTTTA+TGG - chr4_4:47899379-47899398 None:intergenic 35.0%
GCATTATTTAATCGTCTCGT+TGG + chr4_4:47899562-47899581 Msa0684520:CDS 35.0%
!! ATTGATTCTGTCCTGTTTTG+GGG + chr4_4:47899623-47899642 Msa0684520:intron 35.0%
!!! TCGATGTTTTGGAATCTGAA+AGG + chr4_4:47899665-47899684 Msa0684520:intron 35.0%
!!! ATGTTTTGGAATCTGAAAGG+TGG + chr4_4:47899668-47899687 Msa0684520:intron 35.0%
! TTCTTTTCTGTAGGGAAACA+AGG + chr4_4:47899714-47899733 Msa0684520:intron 35.0%
GTTTATATGGCCGATCATAT+TGG + chr4_4:47899773-47899792 Msa0684520:CDS 35.0%
TTATATGGCCGATCATATTG+GGG + chr4_4:47899775-47899794 Msa0684520:CDS 35.0%
AACTACTGTTATGGAAGATC+TGG + chr4_4:47899855-47899874 Msa0684520:CDS 35.0%
CTGGATATTAGTACAACCAT+CGG + chr4_4:47899874-47899893 Msa0684520:CDS 35.0%
TATTAGTACAACCATCGGTA+TGG + chr4_4:47899879-47899898 Msa0684520:CDS 35.0%
! ATCACCTGTTATCATTTTCC+TGG + chr4_4:47899987-47900006 Msa0684520:CDS 35.0%
TCAACCAGGAAAATGATAAC+AGG - chr4_4:47899994-47900013 None:intergenic 35.0%
! GTTATCATTTTCCTGGTTGA+TGG + chr4_4:47899994-47900013 Msa0684520:CDS 35.0%
TATGTTATCTGTGGCAAGAT+TGG - chr4_4:47900251-47900270 None:intergenic 35.0%
! TGTCTTCAGGTTATGGTTAT+TGG - chr4_4:47900358-47900377 None:intergenic 35.0%
! TCATTACTGTCTTCAGGTTA+TGG - chr4_4:47900365-47900384 None:intergenic 35.0%
! TTATGCAGGTGTCTGAATTT+TGG + chr4_4:47900510-47900529 Msa0684520:CDS 35.0%
! CTTCTGATGTTTTCTTCACA+TGG + chr4_4:47900637-47900656 Msa0684520:intron 35.0%
GTTGTCTACTGTCAAATTCA+TGG + chr4_4:47900702-47900721 Msa0684520:intron 35.0%
! CCGTCGATTATATACTATGT+TGG + chr4_4:47900784-47900803 Msa0684520:intron 35.0%
TATGCTCAGACATAAGATCT+TGG + chr4_4:47901029-47901048 Msa0684520:intron 35.0%
! ATGTTTTGTCTCGTATGTTC+AGG - chr4_4:47901193-47901212 None:intergenic 35.0%
! GTGTGTTGAGATGAGAATTT+TGG - chr4_4:47901412-47901431 None:intergenic 35.0%
!!! TAGAATGGTTTTGACCATTG+AGG + chr4_4:47901457-47901476 Msa0684520:intron 35.0%
AGCATAAAATAAGGTTGTGC+AGG - chr4_4:47901527-47901546 None:intergenic 35.0%
AATCAACAAGTTCGTTGCTA+TGG + chr4_4:47901649-47901668 Msa0684520:intron 35.0%
! TCTTCTTGACCTTGTTTGTT+CGG + chr4_4:47901735-47901754 Msa0684520:CDS 35.0%
! TTTTTCATCACCATACAACC+AGG + chr4_4:47901923-47901942 Msa0684520:intron 35.0%
! TTTTCATCACCATACAACCA+GGG + chr4_4:47901924-47901943 Msa0684520:intron 35.0%
TCTTCTTCAACAAGATTCTG+TGG - chr4_4:47902025-47902044 None:intergenic 35.0%
GTTCCAGCAATTTCAATTGT+TGG + chr4_4:47902052-47902071 Msa0684520:CDS 35.0%
CTACCAACAATTGAAATTGC+TGG - chr4_4:47902058-47902077 None:intergenic 35.0%
! ATTGTTGGTAGACCAAATGT+TGG + chr4_4:47902067-47902086 Msa0684520:CDS 35.0%
!!! ATGCTACTTTTGCCAACATT+TGG - chr4_4:47902082-47902101 None:intergenic 35.0%
! AAGTAGCATTTTGAATGCAC+TGG + chr4_4:47902093-47902112 Msa0684520:CDS 35.0%
!! TGTTTCTTTTGGTGACTAAC+CGG + chr4_4:47902205-47902224 Msa0684520:intron 35.0%
CTTCGACTGTATGATTAGAT+GGG - chr4_4:47902372-47902391 None:intergenic 35.0%
CATCTAATCATACAGTCGAA+GGG + chr4_4:47902371-47902390 Msa0684520:intron 35.0%
TGGCTCTTGGCTAAAAAAAT+GGG - chr4_4:47902431-47902450 None:intergenic 35.0%
ATGGCTCTTGGCTAAAAAAA+TGG - chr4_4:47902432-47902451 None:intergenic 35.0%
GTCAAAACATTTCTTGGCAA+TGG - chr4_4:47902451-47902470 None:intergenic 35.0%
ACCATATAGAGCTATAGAAC+AGG + chr4_4:47902649-47902668 Msa0684520:intron 35.0%
!!! CTTTTAGAATTTGGTTCAGC+AGG + chr4_4:47902957-47902976 Msa0684520:intron 35.0%
TTCCATCTTATTGATACTGC+TGG + chr4_4:47903014-47903033 Msa0684520:CDS 35.0%
TTCCAGCAGTATCAATAAGA+TGG - chr4_4:47903019-47903038 None:intergenic 35.0%
TTATTGATACTGCTGGAATC+AGG + chr4_4:47903021-47903040 Msa0684520:CDS 35.0%
AGGCATTACTGATGTAAATG+CGG + chr4_4:47903232-47903251 Msa0684520:intron 35.0%
GCTGAAAGGATAGAAAAAGA+AGG + chr4_4:47903343-47903362 Msa0684520:CDS 35.0%
AGGATAGAAAAAGAAGGGAA+AGG + chr4_4:47903349-47903368 Msa0684520:CDS 35.0%
TGTGATCGTTGTAAACAAGT+GGG + chr4_4:47903375-47903394 Msa0684520:CDS 35.0%
AGAGCAGTAGAATAAACTAC+TGG - chr4_4:47903484-47903503 None:intergenic 35.0%
TTTATTCTACTGCTCTAGCT+GGG + chr4_4:47903488-47903507 Msa0684520:CDS 35.0%
CATTAGCAATTGCAATGTAG+TGG + chr4_4:47903767-47903786 Msa0684520:intron 35.0%
! ATTGTCTCTGCAGAATTTTG+TGG + chr4_4:47903820-47903839 Msa0684520:intron 35.0%
! GTTAGGAGTTCTAGTAACTT+TGG - chr4_4:47903958-47903977 None:intergenic 35.0%
GGATACTTTATTCTCTGGTT+AGG - chr4_4:47903994-47904013 None:intergenic 35.0%
AAAGTTGTTAACACGCTGTT+AGG - chr4_4:47904015-47904034 None:intergenic 35.0%
! TGGCAATATTTTGTTAGGAG+GGG - chr4_4:47904105-47904124 None:intergenic 35.0%
! GTGGCAATATTTTGTTAGGA+GGG - chr4_4:47904106-47904125 None:intergenic 35.0%
! TGACGTGGCAATATTTTGTT+AGG - chr4_4:47904110-47904129 None:intergenic 35.0%
TGTCATAACACCCTAATCTT+TGG - chr4_4:47904210-47904229 None:intergenic 35.0%
! TAGTCTTTGAAGGACTAATC+TGG + chr4_4:47904338-47904357 Msa0684520:intron 35.0%
!! CTTAAGAACTTGGCTGTTTT+TGG + chr4_4:47904518-47904537 Msa0684520:intron 35.0%
!! GGATCTTTTCTATTTGGGTT+TGG + chr4_4:47904540-47904559 Msa0684520:intron 35.0%
TACATGATACATCCAGAAGA+AGG - chr4_4:47904586-47904605 None:intergenic 35.0%
ACTAATCAGCTACTCACTTA+GGG - chr4_4:47904722-47904741 None:intergenic 35.0%
AACTAATCAGCTACTCACTT+AGG - chr4_4:47904723-47904742 None:intergenic 35.0%
ACAAAGAACACAAATGTAGG+CGG - chr4_4:47905066-47905085 None:intergenic 35.0%
AACTAAGTGGGAAAAACATG+TGG - chr4_4:47905389-47905408 None:intergenic 35.0%
CATGCTCTTTATCAACTAAG+TGG - chr4_4:47905402-47905421 None:intergenic 35.0%
GCACAGAAGTCATATTATCA+TGG - chr4_4:47905427-47905446 None:intergenic 35.0%
! CTCCTTCAGATTTTATTCCA+AGG + chr4_4:47905446-47905465 Msa0684520:intron 35.0%
ATCCAGACTTTAGATACATG+TGG - chr4_4:47905734-47905753 None:intergenic 35.0%
AGCAAATCACATATACACAG+GGG - chr4_4:47905760-47905779 None:intergenic 35.0%
ATTGATATCAGCTACACAGT+AGG + chr4_4:47905834-47905853 Msa0684520:intron 35.0%
TGCCCACTAAAATTACCAAA+AGG - chr4_4:47906051-47906070 None:intergenic 35.0%
! AAAATGGGAGTTGGGGTTTT+GGG - chr4_4:47898469-47898488 None:intergenic 40.0%
GAATGAGAAAATGGGAGTTG+GGG - chr4_4:47898476-47898495 None:intergenic 40.0%
GGAATGAGAAAATGGGAGTT+GGG - chr4_4:47898477-47898496 None:intergenic 40.0%
TGGAATGAGAAAATGGGAGT+TGG - chr4_4:47898478-47898497 None:intergenic 40.0%
AAAGGGGGAAAGAATTGAAG+TGG - chr4_4:47898518-47898537 None:intergenic 40.0%
!!! GGATTTTGGTTGAGAAAAGG+GGG - chr4_4:47898533-47898552 None:intergenic 40.0%
TGACGACAATGAATTACCAG+AGG + chr4_4:47898624-47898643 Msa0684520:CDS 40.0%
AACATCAACGTCATCGTCAT+CGG - chr4_4:47898698-47898717 None:intergenic 40.0%
AGATGAGAGAAGTGATGTCA+AGG + chr4_4:47898895-47898914 Msa0684520:CDS 40.0%
GAGAAGTGATGTCAAGGAAA+CGG + chr4_4:47898901-47898920 Msa0684520:CDS 40.0%
AGAAGTGATGTCAAGGAAAC+GGG + chr4_4:47898902-47898921 Msa0684520:CDS 40.0%
AAACGGGTAAAAACTCCAAG+AGG + chr4_4:47898918-47898937 Msa0684520:CDS 40.0%
ACGTGTCAGATATTTGACAC+CGG + chr4_4:47899289-47899308 Msa0684520:intron 40.0%
! CTTCTCATCAAAAGTGTGTC+CGG - chr4_4:47899311-47899330 None:intergenic 40.0%
! CACACTTTTGATGAGAAGTG+TGG + chr4_4:47899313-47899332 Msa0684520:intron 40.0%
TCCTTGGTAGAAGATTGTCA+GGG - chr4_4:47899507-47899526 None:intergenic 40.0%
ATCCTTGGTAGAAGATTGTC+AGG - chr4_4:47899508-47899527 None:intergenic 40.0%
! CTACCAAGGATTGCTATTGT+TGG + chr4_4:47899517-47899536 Msa0684520:CDS 40.0%
CTTCCAACAATAGCAATCCT+TGG - chr4_4:47899523-47899542 None:intergenic 40.0%
CATGATCTCCCCAATATGAT+CGG - chr4_4:47899786-47899805 None:intergenic 40.0%
TTGGGGAGATCATGAATTCA+TGG + chr4_4:47899792-47899811 Msa0684520:CDS 40.0%
AGATCATGAATTCATGGTGG+TGG + chr4_4:47899798-47899817 Msa0684520:CDS 40.0%
GCTTGTCTCTCAATCATTGA+TGG - chr4_4:47899949-47899968 None:intergenic 40.0%
AGGTACATACATGGAAGAGA+AGG - chr4_4:47900060-47900079 None:intergenic 40.0%
TGATGGTTATCAATTACCGG+TGG + chr4_4:47900161-47900180 Msa0684520:intron 40.0%
AAAAGCTTCGAAGATTCAGC+CGG - chr4_4:47900196-47900215 None:intergenic 40.0%
GTGCACAACTATGTTATCTG+TGG - chr4_4:47900260-47900279 None:intergenic 40.0%
GATAATTATGCTGAACAGGC+AGG + chr4_4:47900383-47900402 Msa0684520:intron 40.0%
TTAACAAGTGCGAATCTCCA+CGG + chr4_4:47900480-47900499 Msa0684520:CDS 40.0%
TCCACGGAAAAGAATTATGC+AGG + chr4_4:47900496-47900515 Msa0684520:CDS 40.0%
! ACCTGCATAATTCTTTTCCG+TGG - chr4_4:47900500-47900519 None:intergenic 40.0%
TGACAAAACACCGTAGAACT+TGG + chr4_4:47900577-47900596 Msa0684520:intron 40.0%
AGTGTCAAGACCAAGTTCTA+CGG - chr4_4:47900590-47900609 None:intergenic 40.0%
! TTTTCTTCACATGGTCCCTT+AGG + chr4_4:47900646-47900665 Msa0684520:intron 40.0%
!! GTTTTTCAATGTGCCTCAAC+TGG + chr4_4:47900730-47900749 Msa0684520:intron 40.0%
CTTCATTTCTCTGGCTGATT+TGG + chr4_4:47901120-47901139 Msa0684520:intron 40.0%
CTTTCAATACCATGGTTGAG+TGG + chr4_4:47901545-47901564 Msa0684520:intron 40.0%
ACAGTATAACCACTCAACCA+TGG - chr4_4:47901557-47901576 None:intergenic 40.0%
GTCCCTGATATAGCTGATAT+TGG - chr4_4:47901703-47901722 None:intergenic 40.0%
ATATCAGCTATATCAGGGAC+TGG + chr4_4:47901703-47901722 Msa0684520:CDS 40.0%
! CTTCTTGACCTTGTTTGTTC+GGG + chr4_4:47901736-47901755 Msa0684520:CDS 40.0%
! TTCTTGACCTTGTTTGTTCG+GGG + chr4_4:47901737-47901756 Msa0684520:CDS 40.0%
CAAATTGATCCCTGGTTGTA+TGG - chr4_4:47901936-47901955 None:intergenic 40.0%
!! AGCATTTTGAATGCACTGGT+TGG + chr4_4:47902097-47902116 Msa0684520:CDS 40.0%
ACTGAATTTACTGGACCAGA+TGG + chr4_4:47902175-47902194 Msa0684520:CDS 40.0%
!! ATGGCCAGGTTTGTTTCTTT+TGG + chr4_4:47902194-47902213 Msa0684520:intron 40.0%
GTCACCAAAAGAAACAAACC+TGG - chr4_4:47902201-47902220 None:intergenic 40.0%
! GTGGTACTGAACCCAAATAA+TGG + chr4_4:47902286-47902305 Msa0684520:intron 40.0%
!! TGGCACTGATTGACAAACTA+AGG + chr4_4:47902322-47902341 Msa0684520:intron 40.0%
CCTTCGACTGTATGATTAGA+TGG - chr4_4:47902373-47902392 None:intergenic 40.0%
CCATCTAATCATACAGTCGA+AGG + chr4_4:47902370-47902389 Msa0684520:intron 40.0%
!! GACACTTTGGTTGATTTGGA+AGG - chr4_4:47902502-47902521 None:intergenic 40.0%
ACTCGACACTTTGGTTGATT+TGG - chr4_4:47902506-47902525 None:intergenic 40.0%
AGCCAGGATATCAGAGTTAA+GGG - chr4_4:47902546-47902565 None:intergenic 40.0%
!!! TTGTTGTTTTCATCTCAGCC+AGG - chr4_4:47902562-47902581 None:intergenic 40.0%
!! TAATTGGTTAGGGGCATCAA+TGG - chr4_4:47902619-47902638 None:intergenic 40.0%
! GCCTGTTCTATAGCTCTATA+TGG - chr4_4:47902653-47902672 None:intergenic 40.0%
!! AAATGCGGTGTCTTTAAGGT+GGG - chr4_4:47902741-47902760 None:intergenic 40.0%
! TAAATGCGGTGTCTTTAAGG+TGG - chr4_4:47902742-47902761 None:intergenic 40.0%
GGTTAAATGCGGTGTCTTTA+AGG - chr4_4:47902745-47902764 None:intergenic 40.0%
! GTAGTCACTGGATTTTTCTG+TGG - chr4_4:47902799-47902818 None:intergenic 40.0%
TAAACCACCAACGTTTGGAT+GGG - chr4_4:47902889-47902908 None:intergenic 40.0%
!! ATCCAAACGTTGGTGGTTTA+CGG + chr4_4:47902889-47902908 Msa0684520:intron 40.0%
ATACTGCTGGAATCAGGAAA+AGG + chr4_4:47903027-47903046 Msa0684520:CDS 40.0%
! ATCGTGCATTTCGTGCTATT+AGG + chr4_4:47903096-47903115 Msa0684520:CDS 40.0%
TGTTGTTGCTCTTGTCATTG+AGG + chr4_4:47903127-47903146 Msa0684520:CDS 40.0%
CATTACTGATGTAAATGCGG+TGG + chr4_4:47903235-47903254 Msa0684520:intron 40.0%
AGGACTACAAGATAGCTGAA+AGG + chr4_4:47903329-47903348 Msa0684520:intron 40.0%
GTGTGATCGTTGTAAACAAG+TGG + chr4_4:47903374-47903393 Msa0684520:CDS 40.0%
AGAAGCTTCGCTTACTTGAT+TGG + chr4_4:47903455-47903474 Msa0684520:CDS 40.0%
GAAGCTTCGCTTACTTGATT+GGG + chr4_4:47903456-47903475 Msa0684520:CDS 40.0%
GTTTATTCTACTGCTCTAGC+TGG + chr4_4:47903487-47903506 Msa0684520:CDS 40.0%
!! GTTGACAAGTAAGTTTTGGC+TGG + chr4_4:47903517-47903536 Msa0684520:intron 40.0%
AGGGGATAAAAGAGAGGATA+GGG - chr4_4:47904057-47904076 None:intergenic 40.0%
TAGGGGATAAAAGAGAGGAT+AGG - chr4_4:47904058-47904077 None:intergenic 40.0%
! CGTGGCAATATTTTGTTAGG+AGG - chr4_4:47904107-47904126 None:intergenic 40.0%
TCCCAATTGATCTGGAGAAT+GGG - chr4_4:47904141-47904160 None:intergenic 40.0%
ATCCCAATTGATCTGGAGAA+TGG - chr4_4:47904142-47904161 None:intergenic 40.0%
TGTATCATGTAACCAGTCTG+TGG + chr4_4:47904595-47904614 Msa0684520:intron 40.0%
AAAACCTATCAACCACAGAC+TGG - chr4_4:47904610-47904629 None:intergenic 40.0%
!!! CTGTGGTTGATAGGTTTTCT+TGG + chr4_4:47904612-47904631 Msa0684520:intron 40.0%
CTAATCAGCTACTCACTTAG+GGG - chr4_4:47904721-47904740 None:intergenic 40.0%
AAGGAGAGATCAAGAAGACT+TGG + chr4_4:47904794-47904813 Msa0684520:CDS 40.0%
CAGGTATTTACACCATTCGA+CGG + chr4_4:47904914-47904933 Msa0684520:intron 40.0%
CAGTGATGCATGTATATGCA+GGG + chr4_4:47905328-47905347 Msa0684520:intron 40.0%
AGTGATGCATGTATATGCAG+GGG + chr4_4:47905329-47905348 Msa0684520:intron 40.0%
GATCAACATTGGAGCTATGT+GGG + chr4_4:47905354-47905373 Msa0684520:intron 40.0%
GGCCTTGGAATAAAATCTGA+AGG - chr4_4:47905451-47905470 None:intergenic 40.0%
! CTCCACATGTATCTAAAGTC+TGG + chr4_4:47905729-47905748 Msa0684520:intron 40.0%
AAATCACATATACACAGGGG+CGG - chr4_4:47905757-47905776 None:intergenic 40.0%
GTTTGTATCGGGAAAAGTGA+AGG + chr4_4:47905898-47905917 Msa0684520:intron 40.0%
TTGAGTAGTCCCTGAAAAGA+CGG - chr4_4:47905924-47905943 None:intergenic 40.0%
! TGTGGAGCTTTTACTAACCT+TGG - chr4_4:47905970-47905989 None:intergenic 40.0%
! TACAGTGATCGTGATCCTTT+TGG + chr4_4:47906033-47906052 Msa0684520:intron 40.0%
GTGTAGTAAGAGATAGGGGT+GGG - chr4_4:47898442-47898461 None:intergenic 45.0%
GGTGGTGTAGTAAGAGATAG+GGG - chr4_4:47898446-47898465 None:intergenic 45.0%
GGGTGGTGTAGTAAGAGATA+GGG - chr4_4:47898447-47898466 None:intergenic 45.0%
! AAATGGGAGTTGGGGTTTTG+GGG - chr4_4:47898468-47898487 None:intergenic 45.0%
! GAAAATGGGAGTTGGGGTTT+TGG - chr4_4:47898470-47898489 None:intergenic 45.0%
! AATTCACCGGCGCTGAAATT+CGG - chr4_4:47898592-47898611 None:intergenic 45.0%
GTAATCACATGCGTCAGTGT+TGG + chr4_4:47899258-47899277 Msa0684520:intron 45.0%
TCCCTGACAATCTTCTACCA+AGG + chr4_4:47899503-47899522 Msa0684520:CDS 45.0%
ATTGTTGGAAGACCGAACGT+TGG + chr4_4:47899532-47899551 Msa0684520:CDS 45.0%
!! AATGCTGACTTGCCAACGTT+CGG - chr4_4:47899547-47899566 None:intergenic 45.0%
GTAGGGAAACAAGGCAATTG+TGG + chr4_4:47899723-47899742 Msa0684520:intron 45.0%
GTTACGAGGGACCGTTTATA+TGG + chr4_4:47899760-47899779 Msa0684520:CDS 45.0%
GGGAGATCATGAATTCATGG+TGG + chr4_4:47899795-47899814 Msa0684520:CDS 45.0%
AGTACAACCATCGGTATGGA+TGG + chr4_4:47899883-47899902 Msa0684520:CDS 45.0%
! CTCAATCATTGATGGCATCC+TGG - chr4_4:47899941-47899960 None:intergenic 45.0%
!!! CATTTTCCTGGTTGATGGTC+AGG + chr4_4:47899999-47900018 Msa0684520:CDS 45.0%
CAATTACCTGACCATCAACC+AGG - chr4_4:47900008-47900027 None:intergenic 45.0%
CTGATGTGGAGATTGCTGAT+TGG + chr4_4:47900417-47900436 Msa0684520:CDS 45.0%
!! GTGTCTGAATTTTGGTCCCT+CGG + chr4_4:47900518-47900537 Msa0684520:CDS 45.0%
!! TGTCTGAATTTTGGTCCCTC+GGG + chr4_4:47900519-47900538 Msa0684520:CDS 45.0%
CACTGATAAAGCTTACCCGA+GGG - chr4_4:47900537-47900556 None:intergenic 45.0%
TATCAGTGGAGGATACATGC+TGG + chr4_4:47900549-47900568 Msa0684520:intron 45.0%
CAAACAATTCACGCCAGTTG+AGG - chr4_4:47900746-47900765 None:intergenic 45.0%
GGCGTGAATTGTTTGCGTAT+TGG + chr4_4:47900751-47900770 Msa0684520:intron 45.0%
TCTGTAACCCCGAACAAACA+AGG - chr4_4:47901747-47901766 None:intergenic 45.0%
TTCGGGGTTACAGAAAGTTG+AGG + chr4_4:47901753-47901772 Msa0684520:CDS 45.0%
!! TTTGAATGCACTGGTTGGTG+AGG + chr4_4:47902102-47902121 Msa0684520:CDS 45.0%
AAGAAACAAACCTGGCCATC+TGG - chr4_4:47902193-47902212 None:intergenic 45.0%
CATTTCTTGGCAATGGCTCT+TGG - chr4_4:47902444-47902463 None:intergenic 45.0%
TGATTTCGCACTCGACACTT+TGG - chr4_4:47902515-47902534 None:intergenic 45.0%
GCCAGGATATCAGAGTTAAG+GGG - chr4_4:47902545-47902564 None:intergenic 45.0%
CAGCCAGGATATCAGAGTTA+AGG - chr4_4:47902547-47902566 None:intergenic 45.0%
!! AATGCGGTGTCTTTAAGGTG+GGG - chr4_4:47902740-47902759 None:intergenic 45.0%
! TGTTTTCCCCATCCAAACGT+TGG + chr4_4:47902879-47902898 Msa0684520:intron 45.0%
AAACCACCAACGTTTGGATG+GGG - chr4_4:47902888-47902907 None:intergenic 45.0%
GTAAACCACCAACGTTTGGA+TGG - chr4_4:47902890-47902909 None:intergenic 45.0%
CTGTTCAGTGATACAAGCCA+TGG - chr4_4:47903153-47903172 None:intergenic 45.0%
! CATGGCTTGTATCACTGAAC+AGG + chr4_4:47903151-47903170 Msa0684520:CDS 45.0%
TGAGCTCAAGAGCTCTACAT+TGG + chr4_4:47903907-47903926 Msa0684520:intron 45.0%
!! TAGGAGCATTAGCTCTGGTT+AGG - chr4_4:47903975-47903994 None:intergenic 45.0%
GGGGATAAAAGAGAGGATAG+GGG - chr4_4:47904056-47904075 None:intergenic 45.0%
GAGGATAGGGGATAAAAGAG+AGG - chr4_4:47904063-47904082 None:intergenic 45.0%
TCCCCATTCTCCAGATCAAT+TGG + chr4_4:47904136-47904155 Msa0684520:intron 45.0%
CCCAATTGATCTGGAGAATG+GGG - chr4_4:47904140-47904159 None:intergenic 45.0%
CCCCATTCTCCAGATCAATT+GGG + chr4_4:47904137-47904156 Msa0684520:intron 45.0%
! GGGCTTTATCCCAATTGATC+TGG - chr4_4:47904149-47904168 None:intergenic 45.0%
TTGAGCCCCAGAAATGACAA+AGG - chr4_4:47904478-47904497 None:intergenic 45.0%
GTAACCAGTCTGTGGTTGAT+AGG + chr4_4:47904603-47904622 Msa0684520:intron 45.0%
! CTCCTTTTCGACTTCACTAG+CGG - chr4_4:47904780-47904799 None:intergenic 45.0%
! TAACTTTTAAGCCTCCTCCC+AGG + chr4_4:47904852-47904871 Msa0684520:CDS 45.0%
GCGTGTTTACTATTGCACTC+AGG + chr4_4:47904895-47904914 Msa0684520:CDS 45.0%
GCTCAACTGAAGGAACTCAT+GGG - chr4_4:47904949-47904968 None:intergenic 45.0%
AGCTCAACTGAAGGAACTCA+TGG - chr4_4:47904950-47904969 None:intergenic 45.0%
CTGCAAGAAGACATCTGGTA+AGG - chr4_4:47905031-47905050 None:intergenic 45.0%
CTTACCAGATGTCTTCTTGC+AGG + chr4_4:47905029-47905048 Msa0684520:intron 45.0%
TCTTCTTGCAGGCTGCTATA+AGG + chr4_4:47905040-47905059 Msa0684520:intron 45.0%
!! ATAAAGCGCCGGTAAGTTTC+AGG - chr4_4:47905108-47905127 None:intergenic 45.0%
TGAAACTTACCGGCGCTTTA+TGG + chr4_4:47905107-47905126 Msa0684520:CDS 45.0%
! ATCACTGGCAATAGTCTTGG+TGG - chr4_4:47905315-47905334 None:intergenic 45.0%
TGCATCACTGGCAATAGTCT+TGG - chr4_4:47905318-47905337 None:intergenic 45.0%
CCTGCATATACATGCATCAC+TGG - chr4_4:47905330-47905349 None:intergenic 45.0%
CCAGTGATGCATGTATATGC+AGG + chr4_4:47905327-47905346 Msa0684520:intron 45.0%
GGATCAACATTGGAGCTATG+TGG + chr4_4:47905353-47905372 Msa0684520:intron 45.0%
CTGTCGCAATTGCAAGTAGA+CGG - chr4_4:47905560-47905579 None:intergenic 45.0%
! GGCTGTGGTTCTGTTTGTAT+CGG + chr4_4:47905886-47905905 Msa0684520:intron 45.0%
! GCTGTGGTTCTGTTTGTATC+GGG + chr4_4:47905887-47905906 Msa0684520:intron 45.0%
! AAAGTGAAGGCCGTCTTTTC+AGG + chr4_4:47905911-47905930 Msa0684520:intron 45.0%
! AAGTGAAGGCCGTCTTTTCA+GGG + chr4_4:47905912-47905931 Msa0684520:intron 45.0%
CTGCTCCCTGAAATTAACCA+AGG + chr4_4:47905950-47905969 Msa0684520:intron 45.0%
!! TAATATAATGAATATATAAA+AGG + chr4_4:47900101-47900120 Msa0684520:intron 5.0%
!! AATATAATGAATATATAAAA+GGG + chr4_4:47900102-47900121 Msa0684520:intron 5.0%
!! TTATATAATATATAATTACT+TGG + chr4_4:47904985-47905004 Msa0684520:intron 5.0%
GGTGTAGTAAGAGATAGGGG+TGG - chr4_4:47898443-47898462 None:intergenic 50.0%
GGGGTGGTGTAGTAAGAGAT+AGG - chr4_4:47898448-47898467 None:intergenic 50.0%
!! AATGGGAGTTGGGGTTTTGG+GGG - chr4_4:47898467-47898486 None:intergenic 50.0%
!! TGGAAAAGGGGAGAGTGTTG+TGG - chr4_4:47898498-47898517 None:intergenic 50.0%
!! CGAGGGAGAGAGATGGATTT+TGG - chr4_4:47898547-47898566 None:intergenic 50.0%
! ATTCACCGGCGCTGAAATTC+GGG - chr4_4:47898591-47898610 None:intergenic 50.0%
TTCATTGTCGTCAACGGTGC+CGG - chr4_4:47898617-47898636 None:intergenic 50.0%
AGAAGCAAAGGAAGTTGCGC+TGG + chr4_4:47898732-47898751 Msa0684520:CDS 50.0%
CCTCTTGGGTTTACTCCTCT+TGG - chr4_4:47898936-47898955 None:intergenic 50.0%
CCAAGAGGAGTAAACCCAAG+AGG + chr4_4:47898933-47898952 Msa0684520:CDS 50.0%
GGGAAACAAGGCAATTGTGG+TGG + chr4_4:47899726-47899745 Msa0684520:intron 50.0%
!! GAATTCATGGTGGTGGACAC+TGG + chr4_4:47899805-47899824 Msa0684520:CDS 50.0%
GGGAATACCATCCATACCGA+TGG - chr4_4:47899893-47899912 None:intergenic 50.0%
! TATTCCCCTTGCCTCTAGAG+AGG + chr4_4:47899906-47899925 Msa0684520:CDS 50.0%
AGGTCTAACAGCAGCTGATG+TGG + chr4_4:47900403-47900422 Msa0684520:CDS 50.0%
CCACTGATAAAGCTTACCCG+AGG - chr4_4:47900538-47900557 None:intergenic 50.0%
! CCTCGGGTAAGCTTTATCAG+TGG + chr4_4:47900535-47900554 Msa0684520:intron 50.0%
! CGGGTAAGCTTTATCAGTGG+AGG + chr4_4:47900538-47900557 Msa0684520:intron 50.0%
GCTATATCAGGGACTGGAAC+TGG + chr4_4:47901709-47901728 Msa0684520:CDS 50.0%
ACAATAGTCAGCCCCATCAG+TGG + chr4_4:47902130-47902149 Msa0684520:CDS 50.0%
! TCACGTGTAGTGCCACTGAT+GGG - chr4_4:47902145-47902164 None:intergenic 50.0%
! ATCACGTGTAGTGCCACTGA+TGG - chr4_4:47902146-47902165 None:intergenic 50.0%
ATTTACTGGACCAGATGGCC+AGG + chr4_4:47902180-47902199 Msa0684520:CDS 50.0%
GCCCCTTAACTCTGATATCC+TGG + chr4_4:47902541-47902560 Msa0684520:intron 50.0%
AGCAGCAGAAAAAGATCCCC+AGG + chr4_4:47902588-47902607 Msa0684520:intron 50.0%
GGCATCAATGGTTATGCCTG+GGG - chr4_4:47902607-47902626 None:intergenic 50.0%
GGGCATCAATGGTTATGCCT+GGG - chr4_4:47902608-47902627 None:intergenic 50.0%
TTTCCCCATCCAAACGTTGG+TGG + chr4_4:47902882-47902901 Msa0684520:intron 50.0%
AGCCGTAAACCACCAACGTT+TGG - chr4_4:47902894-47902913 None:intergenic 50.0%
CTCTGTTGTACTTCCAGCTG+AGG - chr4_4:47903063-47903082 None:intergenic 50.0%
! CTCAGCTGGAAGTACAACAG+AGG + chr4_4:47903061-47903080 Msa0684520:CDS 50.0%
TGCTCTTGTCATTGAGGCCA+TGG + chr4_4:47903133-47903152 Msa0684520:CDS 50.0%
!! CTGGTTAGGAGCATTAGCTC+TGG - chr4_4:47903980-47903999 None:intergenic 50.0%
GAATGGGGATAGTAGTGACG+TGG - chr4_4:47904125-47904144 None:intergenic 50.0%
TGCCGCTAGTGAAGTCGAAA+AGG + chr4_4:47904775-47904794 Msa0684520:CDS 50.0%
! CTTTTTCCACCTCGTGTCCT+GGG - chr4_4:47904872-47904891 None:intergenic 50.0%
! TCTTTTTCCACCTCGTGTCC+TGG - chr4_4:47904873-47904892 None:intergenic 50.0%
AGGACACGAGGTGGAAAAAG+AGG + chr4_4:47904872-47904891 Msa0684520:CDS 50.0%
GGACACGAGGTGGAAAAAGA+GGG + chr4_4:47904873-47904892 Msa0684520:CDS 50.0%
AGAGCGTACAGCTCAACTGA+AGG - chr4_4:47904959-47904978 None:intergenic 50.0%
GAAGCAGCTGCGTTCAAATG+CGG + chr4_4:47905131-47905150 Msa0684520:CDS 50.0%
AAGCAGCTGCGTTCAAATGC+GGG + chr4_4:47905132-47905151 Msa0684520:CDS 50.0%
CGTTCAAATGCGGGATTTCC+TGG + chr4_4:47905141-47905160 Msa0684520:CDS 50.0%
GATTTCCTGGTACCCCCATT+CGG + chr4_4:47905154-47905173 Msa0684520:CDS 50.0%
GTGGCGCAGCAGAAGAAAAA+TGG + chr4_4:47905182-47905201 Msa0684520:CDS 50.0%
! ACTGGCAATAGTCTTGGTGG+AGG - chr4_4:47905312-47905331 None:intergenic 50.0%
GATGCATGTATATGCAGGGG+CGG + chr4_4:47905332-47905351 Msa0684520:intron 50.0%
! CATATAGAAGAGGCTGGCTG+TGG + chr4_4:47905871-47905890 Msa0684520:intron 50.0%
ACGAACGAGTGCCAGAAGTT+TGG + chr4_4:47905993-47906012 Msa0684520:intron 50.0%
! TTCACCGGCGCTGAAATTCG+GGG - chr4_4:47898590-47898609 None:intergenic 55.0%
!! TTCAGCGCCGGTGAATTCTC+CGG + chr4_4:47898595-47898614 Msa0684520:CDS 55.0%
! AACGGTGCCGGAGAATTCAC+CGG - chr4_4:47898605-47898624 None:intergenic 55.0%
!! GCAATTGTGGTGGATGAGCC+TGG + chr4_4:47899736-47899755 Msa0684520:CDS 55.0%
TGGATGAGCCTGGAGTTACG+AGG + chr4_4:47899746-47899765 Msa0684520:CDS 55.0%
GGATGAGCCTGGAGTTACGA+GGG + chr4_4:47899747-47899766 Msa0684520:CDS 55.0%
AAACGGTCCCTCGTAACTCC+AGG - chr4_4:47899757-47899776 None:intergenic 55.0%
!! TTCATGGTGGTGGACACTGG+TGG + chr4_4:47899808-47899827 Msa0684520:CDS 55.0%
! AGCTGCCTCTCTAGAGGCAA+GGG - chr4_4:47899914-47899933 None:intergenic 55.0%
GAGACAAGCGATTGCAGCTG+TGG + chr4_4:47899960-47899979 Msa0684520:CDS 55.0%
! TTACCGGTGGTTCTGCAGTC+CGG + chr4_4:47900174-47900193 Msa0684520:intron 55.0%
CAGTGGAGGATACATGCTGG+AGG + chr4_4:47900552-47900571 Msa0684520:intron 55.0%
! CACGTGTAGTGCCACTGATG+GGG - chr4_4:47902144-47902163 None:intergenic 55.0%
! GGGGCATCAATGGTTATGCC+TGG - chr4_4:47902609-47902628 None:intergenic 55.0%
!! CGGTGTCTTTAAGGTGGGGA+GGG - chr4_4:47902736-47902755 None:intergenic 55.0%
AGGACAACTGTAGCCTCAGC+TGG + chr4_4:47903047-47903066 Msa0684520:CDS 55.0%
TGGGGCTCAAGTGATGCACA+TGG + chr4_4:47904488-47904507 Msa0684520:intron 55.0%
GGGTAAGCACTACCGTCGAA+TGG - chr4_4:47904929-47904948 None:intergenic 55.0%
GCAGCCTGCAAGAAGACATC+TGG - chr4_4:47905036-47905055 None:intergenic 55.0%
GCTGCTTCTCCATAAAGCGC+CGG - chr4_4:47905119-47905138 None:intergenic 55.0%
!! AAAAGCCGAATGGGGGTACC+AGG - chr4_4:47905162-47905181 None:intergenic 55.0%
! GTACCCCCATTCGGCTTTTG+TGG + chr4_4:47905163-47905182 Msa0684520:CDS 55.0%
TGCGCCACAAAAGCCGAATG+GGG - chr4_4:47905170-47905189 None:intergenic 55.0%
CTGCGCCACAAAAGCCGAAT+GGG - chr4_4:47905171-47905190 None:intergenic 55.0%
ATGCAGGGGCGGATCAACAT+TGG + chr4_4:47905343-47905362 Msa0684520:intron 55.0%
CTGGCACTCGTTCGTACTTG+TGG - chr4_4:47905988-47906007 None:intergenic 55.0%
AGCGCTCGAGCGAGAAGCAA+AGG + chr4_4:47898720-47898739 Msa0684520:CDS 60.0%
! GCTGCCTCTCTAGAGGCAAG+GGG - chr4_4:47899913-47899932 None:intergenic 60.0%
! CAGCTGCCTCTCTAGAGGCA+AGG - chr4_4:47899915-47899934 None:intergenic 60.0%
GGCAACAGCTGCCTCTCTAG+AGG - chr4_4:47899920-47899939 None:intergenic 60.0%
CTAGAGAGGCAGCTGTTGCC+AGG + chr4_4:47899920-47899939 Msa0684520:CDS 60.0%
!! GCGGTGTCTTTAAGGTGGGG+AGG - chr4_4:47902737-47902756 None:intergenic 60.0%
TTTCCACCTCGTGTCCTGGG+AGG - chr4_4:47904869-47904888 None:intergenic 60.0%
GCGCCACAAAAGCCGAATGG+GGG - chr4_4:47905169-47905188 None:intergenic 60.0%
GCTGCGCCACAAAAGCCGAA+TGG - chr4_4:47905172-47905191 None:intergenic 60.0%
!!! GGGAGTTGGGGTTTTGGGGG+TGG - chr4_4:47898464-47898483 None:intergenic 65.0%
GCAGCAGCGAGGGAGAGAGA+TGG - chr4_4:47898554-47898573 None:intergenic 65.0%
AGCGGGAAAGGCAGCAGCGA+GGG - chr4_4:47898564-47898583 None:intergenic 65.0%
AATTCGGGGCGGAGCGGGAA+AGG - chr4_4:47898576-47898595 None:intergenic 65.0%
GCTGAAATTCGGGGCGGAGC+GGG - chr4_4:47898581-47898600 None:intergenic 65.0%
CGCTGAAATTCGGGGCGGAG+CGG - chr4_4:47898582-47898601 None:intergenic 65.0%
TCCGCCCCGAATTTCAGCGC+CGG + chr4_4:47898583-47898602 Msa0684520:CDS 65.0%
! ACCGGCGCTGAAATTCGGGG+CGG - chr4_4:47898587-47898606 None:intergenic 65.0%
CAGCCGGACTGCAGAACCAC+CGG - chr4_4:47900180-47900199 None:intergenic 65.0%
TCCTTCGACTCCCTCACCCC+CGG + chr4_4:47902690-47902709 Msa0684520:intron 65.0%
! ACCACCATGCCCTTGGTGGC+CGG - chr4_4:47902712-47902731 None:intergenic 65.0%
GGGAACCACCATGCCCTTGG+TGG - chr4_4:47902716-47902735 None:intergenic 65.0%
GGAGGGAACCACCATGCCCT+TGG - chr4_4:47902719-47902738 None:intergenic 65.0%
AAGCCTCCTCCCAGGACACG+AGG + chr4_4:47904860-47904879 Msa0684520:CDS 65.0%
GAGCGGGAAAGGCAGCAGCG+AGG - chr4_4:47898565-47898584 None:intergenic 70.0%
! ACCATGCCCTTGGTGGCCGG+GGG - chr4_4:47902709-47902728 None:intergenic 70.0%
! CACCATGCCCTTGGTGGCCG+GGG - chr4_4:47902710-47902729 None:intergenic 70.0%
! CCACCATGCCCTTGGTGGCC+GGG - chr4_4:47902711-47902730 None:intergenic 70.0%
CCACCTCGTGTCCTGGGAGG+AGG - chr4_4:47904866-47904885 None:intergenic 70.0%
CCTCCTCCCAGGACACGAGG+TGG + chr4_4:47904863-47904882 Msa0684520:CDS 70.0%
GCCGGGGGTGAGGGAGTCGA+AGG - chr4_4:47902694-47902713 None:intergenic 75.0%
TCCCTCACCCCCGGCCACCA+AGG + chr4_4:47902699-47902718 Msa0684520:intron 75.0%
! CCCTTGGTGGCCGGGGGTGA+GGG - chr4_4:47902703-47902722 None:intergenic 75.0%
CCCTCACCCCCGGCCACCAA+GGG + chr4_4:47902700-47902719 Msa0684520:intron 75.0%
ACCCCCGGCCACCAAGGGCA+TGG + chr4_4:47902705-47902724 Msa0684520:intron 75.0%
! CCCGGCCACCAAGGGCATGG+TGG + chr4_4:47902708-47902727 Msa0684520:intron 75.0%
!! GCCCTTGGTGGCCGGGGGTG+AGG - chr4_4:47902704-47902723 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47898412 47906181 47898412 ID=Msa0684520;Name=Msa0684520
chr4_4 mRNA 47898412 47906181 47898412 ID=Msa0684520-mRNA-1;Parent=Msa0684520;Name=Msa0684520-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0.83|0.76|1|0.83|0.76|13|0|628
chr4_4 exon 47898412 47898651 47898412 ID=Msa0684520-mRNA-1:exon:11834;Parent=Msa0684520-mRNA-1
chr4_4 exon 47898682 47898790 47898682 ID=Msa0684520-mRNA-1:exon:11835;Parent=Msa0684520-mRNA-1
chr4_4 exon 47898894 47898961 47898894 ID=Msa0684520-mRNA-1:exon:11836;Parent=Msa0684520-mRNA-1
chr4_4 exon 47899502 47899585 47899502 ID=Msa0684520-mRNA-1:exon:11837;Parent=Msa0684520-mRNA-1
chr4_4 exon 47899727 47900020 47899727 ID=Msa0684520-mRNA-1:exon:11838;Parent=Msa0684520-mRNA-1
chr4_4 exon 47900401 47900540 47900401 ID=Msa0684520-mRNA-1:exon:11839;Parent=Msa0684520-mRNA-1
chr4_4 exon 47901687 47901774 47901687 ID=Msa0684520-mRNA-1:exon:11840;Parent=Msa0684520-mRNA-1
chr4_4 exon 47902019 47902201 47902019 ID=Msa0684520-mRNA-1:exon:11841;Parent=Msa0684520-mRNA-1
chr4_4 exon 47903011 47903172 47903011 ID=Msa0684520-mRNA-1:exon:11842;Parent=Msa0684520-mRNA-1
chr4_4 exon 47903331 47903524 47903331 ID=Msa0684520-mRNA-1:exon:11843;Parent=Msa0684520-mRNA-1
chr4_4 exon 47904766 47904916 47904766 ID=Msa0684520-mRNA-1:exon:11844;Parent=Msa0684520-mRNA-1
chr4_4 exon 47905051 47905216 47905051 ID=Msa0684520-mRNA-1:exon:11845;Parent=Msa0684520-mRNA-1
chr4_4 exon 47906174 47906181 47906174 ID=Msa0684520-mRNA-1:exon:11846;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47898412 47898651 47898412 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47898682 47898790 47898682 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47898894 47898961 47898894 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47899502 47899585 47899502 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47899727 47900020 47899727 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47900401 47900540 47900401 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47901687 47901774 47901687 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47902019 47902201 47902019 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47903011 47903172 47903011 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47903331 47903524 47903331 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47904766 47904916 47904766 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47905051 47905216 47905051 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
chr4_4 CDS 47906174 47906181 47906174 ID=Msa0684520-mRNA-1:cds;Parent=Msa0684520-mRNA-1
Gene Sequence

>Msa0684520

ATGGCATTTCTTTCTCACTTACACTTTCCCACCCCTATCTCTTACTACACCACCCCCAAAACCCCAACTCCCATTTTCTCATTCCACAACACTCTCCCCTTTTCCACTTCAATTCTTTCCCCCTTTTCTCAACCAAAATCCATCTCTCTCCCTCGCTGCTGCCTTTCCCGCTCCGCCCCGAATTTCAGCGCCGGTGAATTCTCCGGCACCGTTGACGACAATGAATTACCAGAGGAATTGATTGATGATTATTCCGATGACGATGACGTTGATGTTGCAGCGCTCGAGCGAGAAGCAAAGGAAGTTGCGCTGGAGTATTCAAGCTCTTTATCTCGCGTTTTGACTATCGAAGATGAGAGAAGTGATGTCAAGGAAACGGGTAAAAACTCCAAGAGGAGTAAACCCAAGAGGAAAATTATCCCTGACAATCTTCTACCAAGGATTGCTATTGTTGGAAGACCGAACGTTGGCAAGTCAGCATTATTTAATCGTCTCGTTGGGGGAAACAAGGCAATTGTGGTGGATGAGCCTGGAGTTACGAGGGACCGTTTATATGGCCGATCATATTGGGGAGATCATGAATTCATGGTGGTGGACACTGGTGGTGTTCTCACTGTTTCAAAATCACAAACTACTGTTATGGAAGATCTGGATATTAGTACAACCATCGGTATGGATGGTATTCCCCTTGCCTCTAGAGAGGCAGCTGTTGCCAGGATGCCATCAATGATTGAGAGACAAGCGATTGCAGCTGTGGAAGAATCACCTGTTATCATTTTCCTGGTTGATGGTCAGGCAGGTCTAACAGCAGCTGATGTGGAGATTGCTGATTGGCTACGTAAAAACTACTCAAATAAAAGTATCATTCTCGCAGTTAACAAGTGCGAATCTCCACGGAAAAGAATTATGCAGGTGTCTGAATTTTGGTCCCTCGGGTTAGAACCAATTCCAATATCAGCTATATCAGGGACTGGAACTGGAGATCTTCTTGACCTTGTTTGTTCGGGGTTACAGAAAGTTGAGGAGCCACAGAATCTTGTTGAAGAAGAAGATTATGTTCCAGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGCATTTTGAATGCACTGGTTGGTGAGGACAGAACAATAGTCAGCCCCATCAGTGGCACTACACGTGATGCTATTGATACTGAATTTACTGGACCAGATGGCCAGAAGTTCCATCTTATTGATACTGCTGGAATCAGGAAAAGGACAACTGTAGCCTCAGCTGGAAGTACAACAGAGGCTTTGTCAGTGAATCGTGCATTTCGTGCTATTAGGCGTTCTGATGTTGTTGCTCTTGTCATTGAGGCCATGGCTTGTATCACTGAACAGGACTACAAGATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATCGTTGTAAACAAGTGGGATACAATACCAAATAAAAATCAGCAGACTGCTTTATACTATGAGCAAGATGTCAGAGAGAAGCTTCGCTTACTTGATTGGGCTCCAGTAGTTTATTCTACTGCTCTAGCTGGGCAAAATGTTGACAAGATCATTGTTGCCGCTAGTGAAGTCGAAAAGGAGAGATCAAGAAGACTTGGTACTTCTATATTGAATCAAGTAGTGCGGGAAGCAGTAACTTTTAAGCCTCCTCCCAGGACACGAGGTGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCGCCTACATTTGTGTTCTTTGTCAATGATGCAAAACTTTTTCCTGAAACTTACCGGCGCTTTATGGAGAAGCAGCTGCGTTCAAATGCGGGATTTCCTGGTACCCCCATTCGGCTTTTGTGGCGCAGCAGAAGAAAAATGGAAAAAGATGAAGATAGTTAA

Protein sequence

>Msa0684520

MAFLSHLHFPTPISYYTTPKTPTPIFSFHNTLPFSTSILSPFSQPKSISLPRCCLSRSAPNFSAGEFSGTVDDNELPEELIDDYSDDDDVDVAALEREAKEVALEYSSSLSRVLTIEDERSDVKETGKNSKRSKPKRKIIPDNLLPRIAIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRSYWGDHEFMVVDTGGVLTVSKSQTTVMEDLDISTTIGMDGIPLASREAAVARMPSMIERQAIAAVEESPVIIFLVDGQAGLTAADVEIADWLRKNYSNKSIILAVNKCESPRKRIMQVSEFWSLGLEPIPISAISGTGTGDLLDLVCSGLQKVEEPQNLVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFHLIDTAGIRKRTTVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIEKEGKGCVIVVNKWDTIPNKNQQTALYYEQDVREKLRLLDWAPVVYSTALAGQNVDKIIVAASEVEKERSRRLGTSILNQVVREAVTFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRFMEKQLRSNAGFPGTPIRLLWRSRRKMEKDEDS*