AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425320 MtrunA17_Chr3g0127351 96.983 232 7 0 1 232 1 232 9.70e-169 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425320 AT4G27700.1 78.409 176 38 0 52 227 42 217 6.34e-102 295

Find 111 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATCCCATGCTATT+TGG 0.204077 3_2:-75711617 None:intergenic
CCTTAATGAGAGGAGGAAAT+TGG 0.210533 3_2:-75710265 None:intergenic
CCAATTTCCTCCTCTCATTA+AGG 0.215936 3_2:+75710265 Msa0425320:five_prime_UTR
GCTTACTTGCTAGTCCTTAA+TGG 0.218285 3_2:+75713532 Msa0425320:CDS
TTTAATCATTATTATGTCTT+TGG 0.237767 3_2:-75711524 None:intergenic
AATTAGGTGAATTAGGTTTC+AGG 0.245763 3_2:+75711056 Msa0425320:five_prime_UTR
CAATTAACGTGCAAGTTTAC+AGG 0.264259 3_2:+75712697 Msa0425320:CDS
TTGATCACGTGTACCTTCTA+AGG 0.292255 3_2:-75711886 None:intergenic
TCAGCGACTTCTCACTTTAG+AGG 0.294655 3_2:-75710867 None:intergenic
ATTGAATCAGTGTGCTTTAG+TGG 0.314181 3_2:-75713876 Msa0425330:intron
AGACGTTGTTGTACCCATTA+AGG 0.314913 3_2:-75713546 Msa0425330:intron
GTGTATCAGCATCCTCATTA+TGG 0.316111 3_2:-75713682 Msa0425330:intron
GGAGGGGAGGTAATGGTTAA+AGG 0.323644 3_2:-75710759 None:intergenic
GATGCACATGAACCATGTTT+TGG 0.337165 3_2:+75713851 Msa0425320:three_prime_UTR
ACCTCCTTGAACTCTGCTTC+TGG 0.359245 3_2:-75712492 Msa0425330:intron
CCATATCTTCTGAATAGATA+TGG 0.364152 3_2:+75710821 Msa0425320:five_prime_UTR
ACTTGCACGTTAATTGCATC+TGG 0.366259 3_2:-75712690 Msa0425330:intron
CTTACTTGCTAGTCCTTAAT+GGG 0.367095 3_2:+75713533 Msa0425320:CDS
CCATATCTATTCAGAAGATA+TGG 0.367191 3_2:-75710821 None:intergenic
TTCAAATAAGATGATGGTAT+TGG 0.384462 3_2:-75711239 None:intergenic
CCACATCATATTTACAATCC+TGG 0.388007 3_2:+75711856 Msa0425320:CDS
AAATGCAAATGCAGCACGTC+TGG 0.405189 3_2:-75712751 Msa0425330:intron
TGTAAAGCCCACCTTCTAGA+TGG 0.405275 3_2:-75713570 Msa0425330:intron
TGAAGGCGCAGAGCTTCCTT+TGG 0.408083 3_2:-75712435 Msa0425330:intron
ATAATAGTAGCTTGCTCAGC+AGG 0.410454 3_2:+75712937 Msa0425320:CDS
TGCCACAAAATCTGAATTTG+TGG 0.412157 3_2:-75711647 None:intergenic
ATGAATCGCATCTGACAAAT+GGG 0.414049 3_2:-75710589 None:intergenic
AGTGTAAGTAGTTAATTCAA+TGG 0.415530 3_2:-75711760 None:intergenic
GATGAATCGCATCTGACAAA+TGG 0.420601 3_2:-75710590 None:intergenic
TCCTGGGTACCTTCCTTAGA+AGG 0.423883 3_2:+75711873 Msa0425320:CDS
CTTAATGAGAGGAGGAAATT+GGG 0.429363 3_2:-75710264 None:intergenic
TCAGGGACTCACCACGGTTA+AGG 0.430614 3_2:+75711074 Msa0425320:five_prime_UTR
TTTACAGGCTTATAAAAGAA+TGG 0.431650 3_2:+75712712 Msa0425320:CDS
ATTAGGTGAATTAGGTTTCA+GGG 0.434060 3_2:+75711057 Msa0425320:five_prime_UTR
GCACGGATAATTCTATTGAA+TGG 0.443072 3_2:+75710796 Msa0425320:five_prime_UTR
TGCCACAAGGTCAACAATCT+AGG 0.445952 3_2:+75712986 Msa0425320:CDS
AAGAAAGTCAATCAAATTCA+AGG 0.458401 3_2:+75710720 Msa0425320:five_prime_UTR
AACGTGAAAGAGTTGTTTAG+AGG 0.460726 3_2:-75711019 None:intergenic
GTTAATTCAATGGAAGTACT+TGG 0.463482 3_2:-75711750 None:intergenic
AAGGCCAGAAGCAGAGTTCA+AGG 0.467849 3_2:+75712488 Msa0425320:CDS
TAGAAGGTGGGCTTTACAAA+TGG 0.471246 3_2:+75713575 Msa0425320:CDS
TTGAAATGTAAACGTTGAAC+TGG 0.478265 3_2:+75713724 Msa0425320:three_prime_UTR
CAGATACCTGGTGACTTGGC+TGG 0.485918 3_2:-75712008 None:intergenic
ATTGAGTTCAAATCCCTTCG+AGG 0.492675 3_2:+75711162 Msa0425320:five_prime_UTR
AGGTAATAGCTGAAGAAGAA+TGG 0.495632 3_2:+75712108 Msa0425320:intron
ACGATTGTTATTAAGAAAAG+TGG 0.497171 3_2:-75710226 None:intergenic
AAGTACTAGTGTCAAGGCAG+AGG 0.501859 3_2:+75711478 Msa0425320:five_prime_UTR
CACATCATATTTACAATCCT+GGG 0.506172 3_2:+75711857 Msa0425320:CDS
CTTGCACGTTAATTGCATCT+GGG 0.507566 3_2:-75712689 Msa0425330:intron
GTACACGTGATCAAAATTCA+TGG 0.508681 3_2:+75711895 Msa0425320:CDS
CATCTTACACTTGATAAACT+CGG 0.509099 3_2:-75712805 Msa0425330:intron
CAATAACTTGAGTTAATACA+TGG 0.509127 3_2:-75711143 None:intergenic
GACTATTACTTGAATTAACC+AGG 0.510124 3_2:+75711198 Msa0425320:five_prime_UTR
TTGTCTAAAGATTGCCTCCA+TGG 0.511374 3_2:+75713784 Msa0425320:three_prime_UTR
ATCTTACACTTGATAAACTC+GGG 0.514723 3_2:-75712804 Msa0425330:intron
ACTCCTCTGCTACAGCTGGC+AGG 0.515472 3_2:-75713609 Msa0425330:intron
AGAACAGAAACTTGTTCAGC+TGG 0.515487 3_2:+75710677 Msa0425320:five_prime_UTR
AGCACGTCTGGCAATGTCCC+AGG 0.517639 3_2:-75712739 Msa0425330:intron
TCCATGGCGTTAACATGGAA+TGG 0.522426 3_2:+75713800 Msa0425320:three_prime_UTR
TTATGGTCAAAACTAGGTCC+AGG 0.530808 3_2:-75713665 Msa0425330:intron
TTTCTCAGCATGCACAATGT+TGG 0.532211 3_2:-75713642 Msa0425330:intron
GCTTTAGTGGTTCCAAAACA+TGG 0.534300 3_2:-75713863 Msa0425330:intron
TATATTTAAAACATAAACAT+AGG 0.535516 3_2:+75711446 Msa0425320:five_prime_UTR
CTGTTGTCAAGTGAGTTGTT+TGG 0.539637 3_2:-75711711 None:intergenic
GCTTTACAAATGGTTTAAAG+AGG 0.544902 3_2:+75713585 Msa0425320:CDS
CTGATACACAAAGGACAGAA+TGG 0.545138 3_2:+75713696 Msa0425320:three_prime_UTR
AACAACGTCTTCCATCTAGA+AGG 0.547666 3_2:+75713559 Msa0425320:CDS
ATGAGGATATCCAAATAGCA+TGG 0.549414 3_2:+75711607 Msa0425320:five_prime_UTR
TTATAAAAGAATGGACAGCC+TGG 0.552760 3_2:+75712721 Msa0425320:CDS
ATTCACTCCTCTGCTACAGC+TGG 0.554886 3_2:-75713613 Msa0425330:intron
TTGCCTCCATGGCGTTAACA+TGG 0.557472 3_2:+75713795 Msa0425320:three_prime_UTR
TCCTCATTATGGTCAAAACT+AGG 0.558607 3_2:-75713671 Msa0425330:intron
AGAACAGATACCTGGTGACT+TGG 0.561851 3_2:-75712012 None:intergenic
ATGAGAGGAGGAAATTGGGA+AGG 0.563624 3_2:-75710260 None:intergenic
TGAGACTGAGCTTCAAAGCA+TGG 0.566115 3_2:+75711803 Msa0425320:exon
TTAATTCAATGGAAGTACTT+GGG 0.569087 3_2:-75711749 None:intergenic
AGCGTTTCCTTAATGAGAGG+AGG 0.569738 3_2:-75710272 None:intergenic
GAAATTGGGAAGGAAGAGCT+TGG 0.576402 3_2:-75710250 None:intergenic
TTGCACGTTAATTGCATCTG+GGG 0.578396 3_2:-75712688 Msa0425330:intron
GGACCTGCCAGCTGTAGCAG+AGG 0.578953 3_2:+75713606 Msa0425320:CDS
ATTGTGCATGCTGAGAAACC+TGG 0.579123 3_2:+75713647 Msa0425320:three_prime_UTR
ACCATTCCATGTTAACGCCA+TGG 0.579175 3_2:-75713801 Msa0425330:intron
CTCGTTGAATACTAGTCCAA+TGG 0.583941 3_2:+75711109 Msa0425320:five_prime_UTR
AATAGAAAGTACTAGTGTCA+AGG 0.584964 3_2:+75711472 Msa0425320:five_prime_UTR
ACAAAACCAGCCAAGTCACC+AGG 0.585038 3_2:+75712002 Msa0425320:CDS
AACGTCTTCCATCTAGAAGG+TGG 0.586598 3_2:+75713562 Msa0425320:CDS
TACCTAGATTGTTGACCTTG+TGG 0.587500 3_2:-75712988 Msa0425330:intron
AAAACATGGTTCATGTGCAT+CGG 0.587851 3_2:-75713849 Msa0425330:intron
CACAACAGAACTTTGCAAGA+GGG 0.596863 3_2:+75711958 Msa0425320:CDS
TTGAGCGTTTCCTTAATGAG+AGG 0.599603 3_2:-75710275 None:intergenic
AAATGTGCATCTGCGTATTG+TGG 0.599697 3_2:-75711677 None:intergenic
TATCGTATCAAAGTAAGCAA+AGG 0.603334 3_2:+75711549 Msa0425320:five_prime_UTR
TCACAACAGAACTTTGCAAG+AGG 0.603824 3_2:+75711957 Msa0425320:CDS
TGAGGATATCCAAATAGCAT+GGG 0.605804 3_2:+75711608 Msa0425320:five_prime_UTR
AGTACTAGTGTCAAGGCAGA+GGG 0.610650 3_2:+75711479 Msa0425320:five_prime_UTR
CTTCTGAATAGATATGGCAA+TGG 0.613624 3_2:+75710827 Msa0425320:five_prime_UTR
TATAAAAGAATGGACAGCCT+GGG 0.617323 3_2:+75712722 Msa0425320:CDS
ACCTTCTAAGGAAGGTACCC+AGG 0.624704 3_2:-75711874 None:intergenic
ACGTCTTCCATCTAGAAGGT+GGG 0.626570 3_2:+75713563 Msa0425320:CDS
CCAGGATTGTAAATATGATG+TGG 0.629329 3_2:-75711856 None:intergenic
TGCACGTTAATTGCATCTGG+GGG 0.637849 3_2:-75712687 Msa0425330:intron
ATAGTAGCTTGCTCAGCAGG+AGG 0.650338 3_2:+75712940 Msa0425320:CDS
TAGGTTTCAGGGACTCACCA+CGG 0.660400 3_2:+75711068 Msa0425320:five_prime_UTR
TCACGTGTACCTTCTAAGGA+AGG 0.660526 3_2:-75711882 None:intergenic
CCAACACAAAATCTGCCACA+AGG 0.681974 3_2:+75712973 Msa0425320:CDS
ATGAGGATGCTGATACACAA+AGG 0.685477 3_2:+75713687 Msa0425320:three_prime_UTR
TGAATCGCATCTGACAAATG+GGG 0.700030 3_2:-75710588 None:intergenic
ATTCCATGTTAACGCCATGG+AGG 0.719899 3_2:-75713798 Msa0425330:intron
CTTGAGATGTGCCTTAACCG+TGG 0.723324 3_2:-75711085 None:intergenic
GCCAGAAGCAGAGTTCAAGG+AGG 0.748938 3_2:+75712491 Msa0425320:CDS
TACTTGGGATCAGACTACTG+CGG 0.756375 3_2:-75711734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGATATGAAAAAAATT+AGG + chr3_2:75711040-75711059 Msa0425320:five_prime_UTR 10.0%
!!! TATATTTAAAACATAAACAT+AGG + chr3_2:75711446-75711465 Msa0425320:five_prime_UTR 10.0%
!!! AGTTAATTAGATTTTAAACA+AGG + chr3_2:75710944-75710963 Msa0425320:five_prime_UTR 15.0%
!!! TATCAAAATTTTTAAAAACC+TGG - chr3_2:75711219-75711238 None:intergenic 15.0%
!! TTTAATCATTATTATGTCTT+TGG - chr3_2:75711527-75711546 None:intergenic 15.0%
!! GTTTAATTGATTGTAATATA+GGG + chr3_2:75712609-75712628 Msa0425320:intron 15.0%
!!! ATGTATGTTTTTTTAGCATA+TGG + chr3_2:75710363-75710382 Msa0425320:intron 20.0%
!!! ATTAACTTACTGTTTCTATT+AGG + chr3_2:75710519-75710538 Msa0425320:intron 20.0%
!! TGAAAAAAATTAGGTGAATT+AGG + chr3_2:75711049-75711068 Msa0425320:five_prime_UTR 20.0%
!!! TTTTACTTCAAATAAGATGA+TGG - chr3_2:75711248-75711267 None:intergenic 20.0%
!!! TACTGCTTTATTTTTTTGTA+GGG - chr3_2:75711383-75711402 None:intergenic 20.0%
!!! TTACTGCTTTATTTTTTTGT+AGG - chr3_2:75711384-75711403 None:intergenic 20.0%
!! AGGAAAAAGAAAAGAAAAAA+AGG + chr3_2:75711569-75711588 Msa0425320:five_prime_UTR 20.0%
!! AACTAAAAGATTGAAATGTT+TGG + chr3_2:75712279-75712298 Msa0425320:intron 20.0%
!! TATCTTTGATCTAATATTGT+AGG + chr3_2:75712398-75712417 Msa0425320:intron 20.0%
!!! CAAAATTATTTTCTTTCTGA+AGG - chr3_2:75712455-75712474 Msa0425330:intron 20.0%
!! GGTTTAATTGATTGTAATAT+AGG + chr3_2:75712608-75712627 Msa0425320:intron 20.0%
!! AACTAAATATTTGATTCATG+CGG + chr3_2:75712878-75712897 Msa0425320:intron 20.0%
!!! CAAAGACATTTAAATTTTAG+AGG + chr3_2:75713218-75713237 Msa0425320:intron 20.0%
!! TTATATCACATGTAACAAAT+TGG - chr3_2:75713283-75713302 Msa0425330:intron 20.0%
!!! AAGACAAATTAGTTCTTTAT+CGG + chr3_2:75713322-75713341 Msa0425320:intron 20.0%
!! ATAATATTCAAATCATCGAT+TGG + chr3_2:75713462-75713481 Msa0425320:intron 20.0%
!! ACGATTGTTATTAAGAAAAG+TGG - chr3_2:75710229-75710248 None:intergenic 25.0%
!! TGTTTTATGCTTGAAAACAA+TGG - chr3_2:75710328-75710347 None:intergenic 25.0%
!!! ATTGTTTTCAAGCATAAAAC+AGG + chr3_2:75710327-75710346 Msa0425320:five_prime_UTR 25.0%
!!! TATTTTGCATAATTCGAGTT+AGG + chr3_2:75710402-75710421 Msa0425320:intron 25.0%
!!! GAGTTAGGCTTATTATTTTT+TGG + chr3_2:75710417-75710436 Msa0425320:intron 25.0%
!!! TTACTGTTTCTATTAGGTAT+GGG + chr3_2:75710525-75710544 Msa0425320:intron 25.0%
! AAGAAAGTCAATCAAATTCA+AGG + chr3_2:75710720-75710739 Msa0425320:five_prime_UTR 25.0%
!!! TGCTTGAAAATTTTAAAGGA+GGG - chr3_2:75710779-75710798 None:intergenic 25.0%
!!! TCCTTTAAAATTTTCAAGCA+CGG + chr3_2:75710779-75710798 Msa0425320:five_prime_UTR 25.0%
! CAATAACTTGAGTTAATACA+TGG - chr3_2:75711146-75711165 None:intergenic 25.0%
!! TTCAAATAAGATGATGGTAT+TGG - chr3_2:75711242-75711261 None:intergenic 25.0%
!!! TTAATTCAATGGAAGTACTT+GGG - chr3_2:75711752-75711771 None:intergenic 25.0%
! AGTGTAAGTAGTTAATTCAA+TGG - chr3_2:75711763-75711782 None:intergenic 25.0%
!!! TGTTGTGATTTTTGAGAATT+GGG - chr3_2:75711945-75711964 None:intergenic 25.0%
! AAACTTAACTTCACTTTGTT+TGG + chr3_2:75712085-75712104 Msa0425320:intron 25.0%
! AATATAAATGCTAAAGATGC+AGG - chr3_2:75712232-75712251 Msa0425330:intron 25.0%
! AATATTGTAGGTAAAAAGTG+TGG + chr3_2:75712410-75712429 Msa0425320:intron 25.0%
!! ATTTTGTGATTCTTGATGTA+AGG + chr3_2:75712469-75712488 Msa0425320:CDS 25.0%
! AAAATGTAACATGAATGTAC+AGG - chr3_2:75712561-75712580 Msa0425330:intron 25.0%
! AGAAGGAAAAAAAAAACTGA+TGG + chr3_2:75712637-75712656 Msa0425320:intron 25.0%
! TTTACAGGCTTATAAAAGAA+TGG + chr3_2:75712712-75712731 Msa0425320:CDS 25.0%
!!! ACATTTAAATTTTAGAGGAC+AGG + chr3_2:75713223-75713242 Msa0425320:intron 25.0%
! TTTCATAATTGCATGAAAAG+TGG - chr3_2:75713441-75713460 Msa0425330:intron 25.0%
!! CTTACTGTTTCTATTAGGTA+TGG + chr3_2:75710524-75710543 Msa0425320:intron 30.0%
!! GCTTGAAAATTTTAAAGGAG+GGG - chr3_2:75710778-75710797 None:intergenic 30.0%
!! GTGCTTGAAAATTTTAAAGG+AGG - chr3_2:75710780-75710799 None:intergenic 30.0%
! TCCGTGCTTGAAAATTTTAA+AGG - chr3_2:75710783-75710802 None:intergenic 30.0%
CCATATCTATTCAGAAGATA+TGG - chr3_2:75710824-75710843 None:intergenic 30.0%
CCATATCTTCTGAATAGATA+TGG + chr3_2:75710821-75710840 Msa0425320:five_prime_UTR 30.0%
AATTAGGTGAATTAGGTTTC+AGG + chr3_2:75711056-75711075 Msa0425320:five_prime_UTR 30.0%
ATTAGGTGAATTAGGTTTCA+GGG + chr3_2:75711057-75711076 Msa0425320:five_prime_UTR 30.0%
GACTATTACTTGAATTAACC+AGG + chr3_2:75711198-75711217 Msa0425320:five_prime_UTR 30.0%
!! AATAGAAAGTACTAGTGTCA+AGG + chr3_2:75711472-75711491 Msa0425320:five_prime_UTR 30.0%
TATCGTATCAAAGTAAGCAA+AGG + chr3_2:75711549-75711568 Msa0425320:five_prime_UTR 30.0%
! GGACAAAAATGATGATAATG+AGG + chr3_2:75711590-75711609 Msa0425320:five_prime_UTR 30.0%
!! GTTAATTCAATGGAAGTACT+TGG - chr3_2:75711753-75711772 None:intergenic 30.0%
CACATCATATTTACAATCCT+GGG + chr3_2:75711857-75711876 Msa0425320:CDS 30.0%
!! CTGTTGTGATTTTTGAGAAT+TGG - chr3_2:75711946-75711965 None:intergenic 30.0%
!! AAATCTTTAAAGTGCTGTGA+CGG - chr3_2:75712060-75712079 None:intergenic 30.0%
! CTATTTGCTAATAAACAGCA+AGG + chr3_2:75712318-75712337 Msa0425320:intron 30.0%
! TGTAATATAGGGTACTAAGA+AGG + chr3_2:75712620-75712639 Msa0425320:intron 30.0%
ATTTGTCTATGATGAATGCA+GGG + chr3_2:75712660-75712679 Msa0425320:intron 30.0%
!!! GCATTTTTTGGTATTTTCTC+TGG + chr3_2:75712768-75712787 Msa0425320:CDS 30.0%
ATCTTACACTTGATAAACTC+GGG - chr3_2:75712807-75712826 Msa0425330:intron 30.0%
CATCTTACACTTGATAAACT+CGG - chr3_2:75712808-75712827 Msa0425330:intron 30.0%
TGAGCAATATTGAAAAACCA+GGG - chr3_2:75713061-75713080 Msa0425330:intron 30.0%
ATGAGCAATATTGAAAAACC+AGG - chr3_2:75713062-75713081 Msa0425330:intron 30.0%
AAGAATATACAGACCAAAAC+TGG + chr3_2:75713101-75713120 Msa0425320:intron 30.0%
AATGTCTTTGAATCTGATGT+TGG - chr3_2:75713208-75713227 Msa0425330:intron 30.0%
! TGTCTTTTTATTACTCTCTC+TGG - chr3_2:75713308-75713327 Msa0425330:intron 30.0%
! TTATCGGCTAAAATACACAA+TGG + chr3_2:75713338-75713357 Msa0425320:intron 30.0%
CATGCAATCCAAGTTATTAA+TGG - chr3_2:75713370-75713389 Msa0425330:intron 30.0%
CATTAATAACTTGGATTGCA+TGG + chr3_2:75713368-75713387 Msa0425320:intron 30.0%
! TCACATTTTTGTACTTTCGT+AGG + chr3_2:75713497-75713516 Msa0425320:intron 30.0%
GCTTTACAAATGGTTTAAAG+AGG + chr3_2:75713585-75713604 Msa0425320:CDS 30.0%
TTGAAATGTAAACGTTGAAC+TGG + chr3_2:75713724-75713743 Msa0425320:three_prime_UTR 30.0%
CTTAATGAGAGGAGGAAATT+GGG - chr3_2:75710267-75710286 None:intergenic 35.0%
ATGAATCGCATCTGACAAAT+GGG - chr3_2:75710592-75710611 None:intergenic 35.0%
!! TGAAAATTTTAAAGGAGGGG+AGG - chr3_2:75710775-75710794 None:intergenic 35.0%
GCACGGATAATTCTATTGAA+TGG + chr3_2:75710796-75710815 Msa0425320:five_prime_UTR 35.0%
CTTCTGAATAGATATGGCAA+TGG + chr3_2:75710827-75710846 Msa0425320:five_prime_UTR 35.0%
AACGTGAAAGAGTTGTTTAG+AGG - chr3_2:75711022-75711041 None:intergenic 35.0%
! CATGGCAAAACTTTTACCAT+TGG - chr3_2:75711128-75711147 None:intergenic 35.0%
ATGAGGATATCCAAATAGCA+TGG + chr3_2:75711607-75711626 Msa0425320:five_prime_UTR 35.0%
TGAGGATATCCAAATAGCAT+GGG + chr3_2:75711608-75711627 Msa0425320:five_prime_UTR 35.0%
TTTAGGAATCCCATGCTATT+TGG - chr3_2:75711620-75711639 None:intergenic 35.0%
! GAATTTGTGGTCGATGTTTT+AGG - chr3_2:75711637-75711656 None:intergenic 35.0%
! GACCACAAATTCAGATTTTG+TGG + chr3_2:75711645-75711664 Msa0425320:five_prime_UTR 35.0%
TGCCACAAAATCTGAATTTG+TGG - chr3_2:75711650-75711669 None:intergenic 35.0%
CCAGGATTGTAAATATGATG+TGG - chr3_2:75711859-75711878 None:intergenic 35.0%
CCACATCATATTTACAATCC+TGG + chr3_2:75711856-75711875 Msa0425320:CDS 35.0%
GTACACGTGATCAAAATTCA+TGG + chr3_2:75711895-75711914 Msa0425320:CDS 35.0%
! CTTAACTTCACTTTGTTTGG+AGG + chr3_2:75712088-75712107 Msa0425320:intron 35.0%
AGGTAATAGCTGAAGAAGAA+TGG + chr3_2:75712108-75712127 Msa0425320:intron 35.0%
AGAATTGCTGCTGCAAAAAA+GGG + chr3_2:75712142-75712161 Msa0425320:CDS 35.0%
! GTGTTCTTATTTGTGCATTC+AGG - chr3_2:75712210-75712229 Msa0425330:three_prime_UTR 35.0%
TGCTAATAAACAGCAAGGAT+CGG + chr3_2:75712323-75712342 Msa0425320:intron 35.0%
ACATGAATGTACAGGTACAT+TGG - chr3_2:75712553-75712572 Msa0425330:intron 35.0%
GATTTGTCTATGATGAATGC+AGG + chr3_2:75712659-75712678 Msa0425320:intron 35.0%
CAATTAACGTGCAAGTTTAC+AGG + chr3_2:75712697-75712716 Msa0425320:CDS 35.0%
TTATAAAAGAATGGACAGCC+TGG + chr3_2:75712721-75712740 Msa0425320:CDS 35.0%
TATAAAAGAATGGACAGCCT+GGG + chr3_2:75712722-75712741 Msa0425320:CDS 35.0%
AATTCAAGAAATGCACGTTG+AGG - chr3_2:75712837-75712856 Msa0425330:intron 35.0%
! TCTAATTTTTCATCGACAGC+TGG - chr3_2:75712904-75712923 Msa0425330:intron 35.0%
ATATACAGACCAAAACTGGT+TGG + chr3_2:75713105-75713124 Msa0425320:intron 35.0%
! AAATTGTTGCCAACCAGTTT+TGG - chr3_2:75713117-75713136 Msa0425330:intron 35.0%
AAAGTGCAAACACACTCAAA+AGG - chr3_2:75713181-75713200 Msa0425330:intron 35.0%
ATCACATGTAACAAATTGGC+AGG - chr3_2:75713279-75713298 Msa0425330:intron 35.0%
!! GGAAAGTGCCATTAATAACT+TGG + chr3_2:75713359-75713378 Msa0425320:intron 35.0%
! CTTACTTGCTAGTCCTTAAT+GGG + chr3_2:75713533-75713552 Msa0425320:CDS 35.0%
!!! ACCTAGTTTTGACCATAATG+AGG + chr3_2:75713670-75713689 Msa0425320:three_prime_UTR 35.0%
TCCTCATTATGGTCAAAACT+AGG - chr3_2:75713674-75713693 Msa0425330:intron 35.0%
AAAACATGGTTCATGTGCAT+CGG - chr3_2:75713852-75713871 Msa0425330:intron 35.0%
ATTGAATCAGTGTGCTTTAG+TGG - chr3_2:75713879-75713898 Msa0425330:intron 35.0%
CCTTAATGAGAGGAGGAAAT+TGG - chr3_2:75710268-75710287 None:intergenic 40.0%
CCAATTTCCTCCTCTCATTA+AGG + chr3_2:75710265-75710284 Msa0425320:five_prime_UTR 40.0%
TTGAGCGTTTCCTTAATGAG+AGG - chr3_2:75710278-75710297 None:intergenic 40.0%
AGATGCTCAGAATATCCCAA+TGG + chr3_2:75710472-75710491 Msa0425320:intron 40.0%
GATGCTCAGAATATCCCAAT+GGG + chr3_2:75710473-75710492 Msa0425320:intron 40.0%
TGAATCGCATCTGACAAATG+GGG - chr3_2:75710591-75710610 None:intergenic 40.0%
GATGAATCGCATCTGACAAA+TGG - chr3_2:75710593-75710612 None:intergenic 40.0%
! AGAACAGAAACTTGTTCAGC+TGG + chr3_2:75710677-75710696 Msa0425320:five_prime_UTR 40.0%
!! TTTTAAAGGAGGGGAGGTAA+TGG - chr3_2:75710769-75710788 None:intergenic 40.0%
CTCGTTGAATACTAGTCCAA+TGG + chr3_2:75711109-75711128 Msa0425320:five_prime_UTR 40.0%
ATTGAGTTCAAATCCCTTCG+AGG + chr3_2:75711162-75711181 Msa0425320:five_prime_UTR 40.0%
! ATTTTACAGCTGTCCTCGAA+GGG - chr3_2:75711178-75711197 None:intergenic 40.0%
AAATGTGCATCTGCGTATTG+TGG - chr3_2:75711680-75711699 None:intergenic 40.0%
CTGTTGTCAAGTGAGTTGTT+TGG - chr3_2:75711714-75711733 None:intergenic 40.0%
TTGATCACGTGTACCTTCTA+AGG - chr3_2:75711889-75711908 None:intergenic 40.0%
TCACAACAGAACTTTGCAAG+AGG + chr3_2:75711957-75711976 Msa0425320:CDS 40.0%
CACAACAGAACTTTGCAAGA+GGG + chr3_2:75711958-75711977 Msa0425320:CDS 40.0%
AGTAACTCAGAACAGATACC+TGG - chr3_2:75712023-75712042 None:intergenic 40.0%
GAGAATTGCTGCTGCAAAAA+AGG + chr3_2:75712141-75712160 Msa0425320:CDS 40.0%
ATCGGACAGAGTACAATCTA+AGG + chr3_2:75712341-75712360 Msa0425320:intron 40.0%
TACATTGGAGCTGGAAAACA+AGG - chr3_2:75712538-75712557 Msa0425330:intron 40.0%
! CATTTTCTGTGTCTCTCTTG+TGG + chr3_2:75712575-75712594 Msa0425320:intron 40.0%
TTGCACGTTAATTGCATCTG+GGG - chr3_2:75712691-75712710 Msa0425330:intron 40.0%
CTTGCACGTTAATTGCATCT+GGG - chr3_2:75712692-75712711 Msa0425330:intron 40.0%
ACTTGCACGTTAATTGCATC+TGG - chr3_2:75712693-75712712 Msa0425330:intron 40.0%
!!! CGTGCTGCATTTGCATTTTT+TGG + chr3_2:75712756-75712775 Msa0425320:CDS 40.0%
!! ATAATAGTAGCTTGCTCAGC+AGG + chr3_2:75712937-75712956 Msa0425320:CDS 40.0%
TACCTAGATTGTTGACCTTG+TGG - chr3_2:75712991-75713010 Msa0425330:intron 40.0%
! ATGAAAGCATGCTCAGGAAA+GGG - chr3_2:75713036-75713055 Msa0425330:intron 40.0%
!! GGATCGGTTTGCGTAAATAA+TGG - chr3_2:75713151-75713170 Msa0425330:intron 40.0%
TGCAAACACACTCAAAAGGT+GGG - chr3_2:75713177-75713196 Msa0425330:intron 40.0%
CATGTAACAAATTGGCAGGA+TGG - chr3_2:75713275-75713294 Msa0425330:intron 40.0%
TGATATAGCTGAAAGCTGCA+TGG + chr3_2:75713409-75713428 Msa0425320:intron 40.0%
! GCTTACTTGCTAGTCCTTAA+TGG + chr3_2:75713532-75713551 Msa0425320:CDS 40.0%
AGACGTTGTTGTACCCATTA+AGG - chr3_2:75713549-75713568 Msa0425330:intron 40.0%
AACAACGTCTTCCATCTAGA+AGG + chr3_2:75713559-75713578 Msa0425320:CDS 40.0%
! TAGAAGGTGGGCTTTACAAA+TGG + chr3_2:75713575-75713594 Msa0425320:CDS 40.0%
TTTCTCAGCATGCACAATGT+TGG - chr3_2:75713645-75713664 Msa0425330:intron 40.0%
TTATGGTCAAAACTAGGTCC+AGG - chr3_2:75713668-75713687 Msa0425330:intron 40.0%
GTGTATCAGCATCCTCATTA+TGG - chr3_2:75713685-75713704 Msa0425330:intron 40.0%
ATGAGGATGCTGATACACAA+AGG + chr3_2:75713687-75713706 Msa0425320:three_prime_UTR 40.0%
CTGATACACAAAGGACAGAA+TGG + chr3_2:75713696-75713715 Msa0425320:three_prime_UTR 40.0%
TTGTCTAAAGATTGCCTCCA+TGG + chr3_2:75713784-75713803 Msa0425320:three_prime_UTR 40.0%
! GATGCACATGAACCATGTTT+TGG + chr3_2:75713851-75713870 Msa0425320:three_prime_UTR 40.0%
GCTTTAGTGGTTCCAAAACA+TGG - chr3_2:75713866-75713885 Msa0425330:intron 40.0%
GAAATTGGGAAGGAAGAGCT+TGG - chr3_2:75710253-75710272 None:intergenic 45.0%
ATGAGAGGAGGAAATTGGGA+AGG - chr3_2:75710263-75710282 None:intergenic 45.0%
AGCGTTTCCTTAATGAGAGG+AGG - chr3_2:75710275-75710294 None:intergenic 45.0%
!! TATCCCAATGGGCTAAAAGC+AGG + chr3_2:75710484-75710503 Msa0425320:intron 45.0%
!! ATCCCAATGGGCTAAAAGCA+GGG + chr3_2:75710485-75710504 Msa0425320:intron 45.0%
!! ATCCCTGCTTTTAGCCCATT+GGG - chr3_2:75710490-75710509 None:intergenic 45.0%
!! AATCCCTGCTTTTAGCCCAT+TGG - chr3_2:75710491-75710510 None:intergenic 45.0%
TCAGCGACTTCTCACTTTAG+AGG - chr3_2:75710870-75710889 None:intergenic 45.0%
! CATTTTACAGCTGTCCTCGA+AGG - chr3_2:75711179-75711198 None:intergenic 45.0%
AAGTACTAGTGTCAAGGCAG+AGG + chr3_2:75711478-75711497 Msa0425320:five_prime_UTR 45.0%
AGTACTAGTGTCAAGGCAGA+GGG + chr3_2:75711479-75711498 Msa0425320:five_prime_UTR 45.0%
TACTTGGGATCAGACTACTG+CGG - chr3_2:75711737-75711756 None:intergenic 45.0%
TGAGACTGAGCTTCAAAGCA+TGG + chr3_2:75711803-75711822 Msa0425320:exon 45.0%
! TCACGTGTACCTTCTAAGGA+AGG - chr3_2:75711885-75711904 None:intergenic 45.0%
AGAACAGATACCTGGTGACT+TGG - chr3_2:75712015-75712034 None:intergenic 45.0%
! TGTGCATTCAGGAGAGTATG+CGG - chr3_2:75712199-75712218 Msa0425330:three_prime_UTR 45.0%
! GGTAAAAAGTGTGGAGCCAA+AGG + chr3_2:75712419-75712438 Msa0425320:intron 45.0%
ATGTACAGGTACATTGGAGC+TGG - chr3_2:75712547-75712566 Msa0425330:intron 45.0%
TCTCTCTTGTGGCTTCTACT+TGG + chr3_2:75712586-75712605 Msa0425320:intron 45.0%
CTCTCTTGTGGCTTCTACTT+GGG + chr3_2:75712587-75712606 Msa0425320:intron 45.0%
TGCACGTTAATTGCATCTGG+GGG - chr3_2:75712690-75712709 Msa0425330:intron 45.0%
AAATGCAAATGCAGCACGTC+TGG - chr3_2:75712754-75712773 Msa0425330:intron 45.0%
! CCTTGTGGCAGATTTTGTGT+TGG - chr3_2:75712976-75712995 Msa0425330:intron 45.0%
CCAACACAAAATCTGCCACA+AGG + chr3_2:75712973-75712992 Msa0425320:CDS 45.0%
TGCCACAAGGTCAACAATCT+AGG + chr3_2:75712986-75713005 Msa0425320:CDS 45.0%
! GATGAAAGCATGCTCAGGAA+AGG - chr3_2:75713037-75713056 Msa0425330:intron 45.0%
! ACACACTCAAAAGGTGGGTT+GGG - chr3_2:75713172-75713191 Msa0425330:intron 45.0%
AACACACTCAAAAGGTGGGT+TGG - chr3_2:75713173-75713192 Msa0425330:intron 45.0%
GTGCAAACACACTCAAAAGG+TGG - chr3_2:75713178-75713197 Msa0425330:intron 45.0%
AACGTCTTCCATCTAGAAGG+TGG + chr3_2:75713562-75713581 Msa0425320:CDS 45.0%
ACGTCTTCCATCTAGAAGGT+GGG + chr3_2:75713563-75713582 Msa0425320:CDS 45.0%
TGTAAAGCCCACCTTCTAGA+TGG - chr3_2:75713573-75713592 Msa0425330:intron 45.0%
ATTGTGCATGCTGAGAAACC+TGG + chr3_2:75713647-75713666 Msa0425320:three_prime_UTR 45.0%
ATTCCATGTTAACGCCATGG+AGG - chr3_2:75713801-75713820 Msa0425330:intron 45.0%
TCCATGGCGTTAACATGGAA+TGG + chr3_2:75713800-75713819 Msa0425320:three_prime_UTR 45.0%
ACCATTCCATGTTAACGCCA+TGG - chr3_2:75713804-75713823 Msa0425330:intron 45.0%
CTGCAGCAGAAGAATCATGC+AGG - chr3_2:75710559-75710578 None:intergenic 50.0%
! GGAGGGGAGGTAATGGTTAA+AGG - chr3_2:75710762-75710781 None:intergenic 50.0%
TAGGTTTCAGGGACTCACCA+CGG + chr3_2:75711068-75711087 Msa0425320:five_prime_UTR 50.0%
CTTGAGATGTGCCTTAACCG+TGG - chr3_2:75711088-75711107 None:intergenic 50.0%
TCCTGGGTACCTTCCTTAGA+AGG + chr3_2:75711873-75711892 Msa0425320:CDS 50.0%
!! ACCTTCTAAGGAAGGTACCC+AGG - chr3_2:75711877-75711896 None:intergenic 50.0%
!!! TGGTGACTTGGCTGGTTTTG+TGG - chr3_2:75712003-75712022 None:intergenic 50.0%
ACAAAACCAGCCAAGTCACC+AGG + chr3_2:75712002-75712021 Msa0425320:CDS 50.0%
! TGCATTCAGGAGAGTATGCG+GGG - chr3_2:75712197-75712216 Msa0425330:three_prime_UTR 50.0%
! GTGCATTCAGGAGAGTATGC+GGG - chr3_2:75712198-75712217 Msa0425330:three_prime_UTR 50.0%
AAGGCCAGAAGCAGAGTTCA+AGG + chr3_2:75712488-75712507 Msa0425320:CDS 50.0%
ACCTCCTTGAACTCTGCTTC+TGG - chr3_2:75712495-75712514 Msa0425330:intron 50.0%
CGTTAATTGCATCTGGGGGA+TGG - chr3_2:75712686-75712705 Msa0425330:intron 50.0%
!! ATAGTAGCTTGCTCAGCAGG+AGG + chr3_2:75712940-75712959 Msa0425320:CDS 50.0%
! AGGGAGATGAAAGCATGCTC+AGG - chr3_2:75713042-75713061 Msa0425330:intron 50.0%
TGAGCATGCTTTCATCTCCC+TGG + chr3_2:75713041-75713060 Msa0425320:intron 50.0%
!! CTCAAAAGGTGGGTTGGGAT+CGG - chr3_2:75713167-75713186 Msa0425330:intron 50.0%
ATTCACTCCTCTGCTACAGC+TGG - chr3_2:75713616-75713635 Msa0425330:intron 50.0%
TTGCCTCCATGGCGTTAACA+TGG + chr3_2:75713795-75713814 Msa0425320:three_prime_UTR 50.0%
TCAGGGACTCACCACGGTTA+AGG + chr3_2:75711074-75711093 Msa0425320:five_prime_UTR 55.0%
! CAGATACCTGGTGACTTGGC+TGG - chr3_2:75712011-75712030 None:intergenic 55.0%
! TGAAGGCGCAGAGCTTCCTT+TGG - chr3_2:75712438-75712457 Msa0425330:intron 55.0%
GCCAGAAGCAGAGTTCAAGG+AGG + chr3_2:75712491-75712510 Msa0425320:CDS 55.0%
!!! CTGGTTTTGTGGCTGCGCTC+TGG - chr3_2:75711992-75712011 None:intergenic 60.0%
GGGGCAGGCACAGATGATAG+AGG - chr3_2:75712178-75712197 Msa0425330:three_prime_UTR 60.0%
! TTCAGGAGAGTATGCGGGGC+AGG - chr3_2:75712193-75712212 Msa0425330:three_prime_UTR 60.0%
AGCACGTCTGGCAATGTCCC+AGG - chr3_2:75712742-75712761 Msa0425330:intron 60.0%
ACTCCTCTGCTACAGCTGGC+AGG - chr3_2:75713612-75713631 Msa0425330:intron 60.0%
GGACCTGCCAGCTGTAGCAG+AGG + chr3_2:75713606-75713625 Msa0425320:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75710211 75713909 75710211 ID=Msa0425320;Name=Msa0425320
chr3_2 mRNA 75710211 75713909 75710211 ID=Msa0425320-mRNA-1;Parent=Msa0425320;Name=Msa0425320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1381|1|1|1|0.83|0.71|7|276|232
chr3_2 exon 75710211 75710348 75710211 ID=Msa0425320-mRNA-1:exon:19416;Parent=Msa0425320-mRNA-1
chr3_2 exon 75710579 75712023 75710579 ID=Msa0425320-mRNA-1:exon:19417;Parent=Msa0425320-mRNA-1
chr3_2 exon 75712117 75712163 75712117 ID=Msa0425320-mRNA-1:exon:19418;Parent=Msa0425320-mRNA-1
chr3_2 exon 75712420 75712512 75712420 ID=Msa0425320-mRNA-1:exon:19419;Parent=Msa0425320-mRNA-1
chr3_2 exon 75712681 75712819 75712681 ID=Msa0425320-mRNA-1:exon:19420;Parent=Msa0425320-mRNA-1
chr3_2 exon 75712905 75713007 75712905 ID=Msa0425320-mRNA-1:exon:19421;Parent=Msa0425320-mRNA-1
chr3_2 exon 75713519 75713909 75713519 ID=Msa0425320-mRNA-1:exon:19422;Parent=Msa0425320-mRNA-1
chr3_2 five_prime_UTR 75710211 75710348 75710211 ID=Msa0425320-mRNA-1:five_prime_utr;Parent=Msa0425320-mRNA-1
chr3_2 five_prime_UTR 75710579 75711821 75710579 ID=Msa0425320-mRNA-1:five_prime_utr;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75711822 75712023 75711822 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75712117 75712163 75712117 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75712420 75712512 75712420 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75712681 75712819 75712681 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75712905 75713007 75712905 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 CDS 75713519 75713633 75713519 ID=Msa0425320-mRNA-1:cds;Parent=Msa0425320-mRNA-1
chr3_2 three_prime_UTR 75713634 75713909 75713634 ID=Msa0425320-mRNA-1:three_prime_utr;Parent=Msa0425320-mRNA-1
Gene Sequence

>Msa0425320

ATGGCTTTTACATCAACTGCTCTACAATATTCATCCACATCATATTTACAATCCTGGGTACCTTCCTTAGAAGGTACACGTGATCAAAATTCATGGTGCGTCAGAGTGAGATCATACAAACCCAATTCTCAAAAATCACAACAGAACTTTGCAAGAGGGATTACAATCCAGAGCGCAGCCACAAAACCAGCCAAGTCACCAGCTGAAGAAGAATGGAAAGTTAAGCGAGAATTGCTGCTGCAAAAAAGGGTAAAAAGTGTGGAGCCAAAGGAAGCTCTGCGCCTTCAGAAAGAAAATAATTTTGTGATTCTTGATGTAAGGCCAGAAGCAGAGTTCAAGGAGGGCCATCCCCCAGATGCAATTAACGTGCAAGTTTACAGGCTTATAAAAGAATGGACAGCCTGGGACATTGCCAGACGTGCTGCATTTGCATTTTTTGGTATTTTCTCTGGCACAGAAGAAAATCCCGAGTTTATCAAGTCTGTCGATGAAAAATTAGATAAAAATGCAAAGATAATAGTAGCTTGCTCAGCAGGAGGAACAATGAAACCAACACAAAATCTGCCACAAGGTCAACAATCTAGGTCTCTAATAGCAGCTTACTTGCTAGTCCTTAATGGGTACAACAACGTCTTCCATCTAGAAGGTGGGCTTTACAAATGGTTTAAAGAGGACCTGCCAGCTGTAGCAGAGGAGTGA

Protein sequence

>Msa0425320

MAFTSTALQYSSTSYLQSWVPSLEGTRDQNSWCVRVRSYKPNSQKSQQNFARGITIQSAATKPAKSPAEEEWKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIKSVDEKLDKNAKIIVACSAGGTMKPTQNLPQGQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE*