AlfalfaGEDB | Msa1454790

M. sativa cultivar zhongmu-4 / Msa1454790

KEGG: -
GO: GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454790	sp\|Q9XIL5\|PP154_ARATH	53.741	802	330	8	14	778	39	836	0.0	858

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454790	A0A072VEK1	92.269	789	50	4	1	779	1	788	0.0	1488

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008850	Msa1454790	0.825804	3.838392e-54	-8.615850e-47
Msa0017120	Msa1454790	0.804674	1.928396e-49	-8.615850e-47
Msa0020630	Msa1454790	0.803471	3.431925e-49	-8.615850e-47
Msa0027540	Msa1454790	0.843090	1.735294e-58	-8.615850e-47
Msa0037820	Msa1454790	0.824878	6.355928e-54	-8.615850e-47
Msa0044710	Msa1454790	0.818437	1.961582e-52	-8.615850e-47
Msa0050720	Msa1454790	0.815293	9.958757e-52	-8.615850e-47
Msa0050770	Msa1454790	0.806687	7.287260e-50	-8.615850e-47
Msa0067150	Msa1454790	0.805187	1.506690e-49	-8.615850e-47
Msa0068410	Msa1454790	0.825920	3.602700e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454790	MtrunA17_Chr1g0157081	92.269	789	50	4	1	779	1	788	0.0	1488
Msa1454790	MtrunA17_Chr1g0210801	24.703	421	293	12	119	534	77	478	3.05e-23	104
Msa1454790	MtrunA17_Chr1g0210801	23.588	301	218	5	251	549	133	423	3.14e-14	76.3
Msa1454790	MtrunA17_Chr2g0292711	24.353	464	272	17	130	526	170	621	4.06e-17	85.9
Msa1454790	MtrunA17_Chr3g0136851	22.636	349	254	6	191	537	280	614	4.23e-16	83.2
Msa1454790	MtrunA17_Chr3g0143411	23.701	308	213	8	187	489	149	439	1.38e-15	80.5
Msa1454790	MtrunA17_Chr3g0126821	26.333	300	203	7	214	506	204	492	4.87e-15	79.0
Msa1454790	MtrunA17_Chr7g0257471	24.062	320	223	8	202	517	439	742	2.03e-14	77.4
Msa1454790	MtrunA17_Chr2g0285331	22.478	347	240	10	151	487	166	493	2.59e-14	77.0
Msa1454790	MtrunA17_Chr4g0038401	22.157	343	249	7	203	542	310	637	2.75e-14	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454790	AT2G15820.1	53.741	802	330	8	14	778	39	836	0.0	858
Msa1454790	AT2G35130.3	21.585	366	274	6	167	531	141	494	5.49e-16	82.4
Msa1454790	AT2G31400.1	23.118	372	272	8	135	504	186	545	8.10e-16	82.4
Msa1454790	AT2G31400.2	23.118	372	272	8	135	504	186	545	9.25e-16	82.4
Msa1454790	AT2G35130.2	21.409	369	274	7	167	531	163	519	9.70e-15	78.6
Msa1454790	AT5G61990.1	23.262	374	265	9	185	549	596	956	9.87e-15	79.0
Msa1454790	AT2G35130.1	21.409	369	274	7	167	531	141	497	1.32e-14	78.2
Msa1454790	AT1G09680.1	23.906	297	212	6	149	445	280	562	1.78e-14	77.8
Msa1454790	AT1G09680.1	21.765	340	242	9	193	526	252	573	7.27e-13	72.4
Msa1454790	AT1G09680.1	20.672	387	263	7	163	542	100	449	1.10e-11	68.9

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Find 219 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCGGCTGCCGCGTC+CGG	0.426245	tig0035440:+4949	Msa1454790:CDS
AAAGCGGCGGAGGTGGAGGA+GGG	0.527007	tig0035440:-4825	None:intergenic
AAAGCTCTTATAAGCGAACC+AGG	0.587841	tig0035440:+6193	Msa1454790:CDS
AAAGTCCCCGCCTTATGCGC+CGG	0.582323	tig0035440:-5049	None:intergenic
AAATATCGTTGTTGTCAGGA+AGG	0.616522	tig0035440:-4895	None:intergenic
AAATATCTTTATGCACATCA+AGG	0.541678	tig0035440:-6279	None:intergenic
AACAGAGAGAAATACTGATT+GGG	0.489307	tig0035440:+7118	Msa1454790:CDS
AACCACCTATGAACAAGTTT+TGG	0.306684	tig0035440:-7396	None:intergenic
AACCTTGAACAGAAGAACTA+AGG	0.520036	tig0035440:-6084	None:intergenic
AACGCATTGAAGAGAGGTTA+GGG	0.465533	tig0035440:-4739	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTGATTAGGATTCTGAA+TGG	+	tig0035440:5067-5086	Msa1454790:CDS	30.0%
CTTTGATTAGGATTCTGAAT+GGG	+	tig0035440:5068-5087	Msa1454790:CDS	30.0%
ATATCATTATGCATTGCTTG+CGG	+	tig0035440:5125-5144	Msa1454790:CDS	30.0%
TGTAGAGAAATGAAAGTGAA+AGG	-	tig0035440:5198-5217	None:intergenic	30.0%
AAGAACTATAAACCAAGACT+TGG	-	tig0035440:5522-5541	None:intergenic	30.0%
TTCTTTATGCTACAAAGCTT+AGG	+	tig0035440:5537-5556	Msa1454790:intron	30.0%
TCTTTATGCTACAAAGCTTA+GGG	+	tig0035440:5538-5557	Msa1454790:intron	30.0%
TACTAATTCCAATCAGTAGA+AGG	-	tig0035440:5778-5797	None:intergenic	30.0%
CATTTGTATACCTTTAAGCA+GGG	-	tig0035440:5896-5915	None:intergenic	30.0%
TATACAAATGGATGATGCAA+CGG	+	tig0035440:5906-5925	Msa1454790:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0035440	gene	4669	7947	4669	ID=Msa1454790;Name=Msa1454790
tig0035440	mRNA	4669	7947	4669	ID=Msa1454790-mRNA-1;Parent=Msa1454790;Name=Msa1454790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=8\|1\|1\|1\|1\|1\|2\|201\|779
tig0035440	exon	4669	5174	4669	ID=Msa1454790-mRNA-1:exon:19936;Parent=Msa1454790-mRNA-1
tig0035440	exon	5905	7947	5905	ID=Msa1454790-mRNA-1:exon:19937;Parent=Msa1454790-mRNA-1
tig0035440	five_prime_UTR	4669	4676	4669	ID=Msa1454790-mRNA-1:five_prime_utr;Parent=Msa1454790-mRNA-1
tig0035440	CDS	4677	5174	4677	ID=Msa1454790-mRNA-1:cds;Parent=Msa1454790-mRNA-1
tig0035440	CDS	5905	7746	5905	ID=Msa1454790-mRNA-1:cds;Parent=Msa1454790-mRNA-1
tig0035440	three_prime_UTR	7747	7947	7747	ID=Msa1454790-mRNA-1:three_prime_utr;Parent=Msa1454790-mRNA-1

Gene Sequence

>Msa1454790

ATGGTGTTGAAAGCACCACTTCTTCTTCCTGTTTCAACTTCAGTCATAACATTTTCCTTAAACCCTAACCTCTCTTCAATGCGTTCTACCTTCACACTTTTCCGCAATCTTACCCTCTCCACTCTCCACCTACCTCGCACCCTCCCTTCCCTCCTCCACCTCCGCCGCTTTCCCCTCAACTGCGTTGGCAACGTCGAACAATGGCTTCTCCATCAAGACCTTCCTGACAACAACGATATTTTCCGTTTCGCAGGGGTGGAGGAGGCTGAAGAAAACAAGCGGCTGCCGCGTCCGGAGGTTGATGTGAAGGAGTTGAGTGAGGTGCCGGAGCTATGGCGGAGGTCCAGAGTTGCTTGGCTTTGTAAGGAGTTACCGGCGCATAAGGCGGGGACTTTGATTAGGATTCTGAATGGGCAGAGGAAGTGGTTGAGGCAGGATGATGCTACTTATATCATTATGCATTGCTTGCGGATTCGCGAGAACGAAACCGCGTTTAGGGTATACAAATGGATGATGCAACGGAGTTGGTATCGGTTTGATTTTGCTCTTTCTACTAGGCTAGCAGATTACATGGGTAAAGAGCGCAAGTTTACAAAGTGCCGTGAGGTATTTGATGATATTATCAATCAAGGCCGTGTTCCCAGCGAGTCCACGTTCCATATATTGATTGTGGCTTACCTTAGTTCTTCTGTTCAAGGTTGTTTGGATGATGCATTTGACATATTCCACCGAATGATTCAATTGGGTGGATACCAGCCGCGTCTTAGCTTGCATAATTCCCTCTTCAAAGCTCTTATAAGCGAACCAGGGAACTTTTCAAAGCAGTACCTTAAGCAAGCTGAGTTTATATATCATCGTTTGGTTACAAATGGCCTTGATGTGCATAAAGATATTTATGGTGGCCTAATTTGGCTGCATAGCTATCAGGATTCCATAGACAAAGAAAGAATAGAAGCATTGAGGCAAGAGATGCTACGCGCTGGTATTGATGAAAACCAAGAGGTGCTAGTATCGATCTTGAGGGCCTGCGCAAGGGAGGGTGAGGTGGAGGAAGCAGAGAAAACTTGGTCCAAACTTTTGCAGTTTGAAAGCAACCCCCCATCACAGGCTTTTGTGTACAAAATGGAAGTCCACTCTAAGGTTGGTATGCCTATGAAGTCCTTGGAGATATTTAGAGAAATGAAGTTGAAACTAGGTAAGATAGGTGTTGCAGCATATAATAAAATAATTGAGATTCTATGCAAAGCACAAGAATCCGAATTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGGTCTGAAGCCCCTTACACCATCATATGTTTATTTACTAAACATGTACTTCAATATGGAATCACATGATAAATTGGAAGAGGCGTTCTCTCAATGCCTCGAGAAATGCCATCCTAATAGTGTTATATATAGTATATATTTAGATTCTTTGGTGAAAGTTGGTAAAATTGACAAGGCTGGAGATATCTTTAGCCAAATGTTTCGTGATGCAAGTATTGGTGTTAATGCCCGATCATGTAACATCATCTTACATGGATACCTATATTCAGGAAATCACTTAAAGGCAGAGAAGATCTATGACTTAATGTGCCAAAATAAGTATGAAATTGATGCCCCATTAATGGAAAAACTTGAATACATCCAGAGTTTGAGAAGGAAAATTATTAAAAAGCCAATGAGCCTGAAGTTAAATAAAGAACAGAGAGAAATACTGATTGGGATGCTTCTAGCTGGTTTGCAAATTGATTCTGATGACAAAAATAAGAACCATATTATCCATTTCAATTTTGATGGCAATTCTGTGAGTCATTACGTCTTGAAGAGTCATATACATCGCCAGTTTTATGAGTGGCTACATCCTACTTCTAAGCCAAGTGGTGACAGTGAGAACATACCAGATAAGTTTTGCACCATTGCAAGCTCTCATTTTGGCTTTTATGCCAATCAGTTTTGGCCAAATGGTCAACCTACAATTCCAAAACTTGTTCATAGGTGGTTGTCACCTTGTGTTCTTGCATACTGGTACATGTATGGAGGGCATCGAAATTCATCGGGGGATGTTTTGCTGAAGATTAAGGGAAGTCGTGAGGGTGTGGAGAACATTGTCAAAAAGTTCAAAGCCATGTCCATTGATTGTAAAGTCAAGGGAAAGGGAAAGGTATTCTGGATTGGTATTCTGGGAAGCAATACAACTTGGTTCTGGAAATTGGTTGAGCCATATATTCTTGAAGATGTAAGAGATTTCACTAAGGCAGGTGTGAATATAATGAGACAGGATTTAACAGAAACTCAAGATATTAACTTCTGTAGTGAATCAGACGAATGA

Protein sequence

>Msa1454790

MVLKAPLLLPVSTSVITFSLNPNLSSMRSTFTLFRNLTLSTLHLPRTLPSLLHLRRFPLNCVGNVEQWLLHQDLPDNNDIFRFAGVEEAEENKRLPRPEVDVKELSEVPELWRRSRVAWLCKELPAHKAGTLIRILNGQRKWLRQDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALSTRLADYMGKERKFTKCREVFDDIINQGRVPSESTFHILIVAYLSSSVQGCLDDAFDIFHRMIQLGGYQPRLSLHNSLFKALISEPGNFSKQYLKQAEFIYHRLVTNGLDVHKDIYGGLIWLHSYQDSIDKERIEALRQEMLRAGIDENQEVLVSILRACAREGEVEEAEKTWSKLLQFESNPPSQAFVYKMEVHSKVGMPMKSLEIFREMKLKLGKIGVAAYNKIIEILCKAQESEFAESIMTDFVKSGLKPLTPSYVYLLNMYFNMESHDKLEEAFSQCLEKCHPNSVIYSIYLDSLVKVGKIDKAGDIFSQMFRDASIGVNARSCNIILHGYLYSGNHLKAEKIYDLMCQNKYEIDAPLMEKLEYIQSLRRKIIKKPMSLKLNKEQREILIGMLLAGLQIDSDDKNKNHIIHFNFDGNSVSHYVLKSHIHRQFYEWLHPTSKPSGDSENIPDKFCTIASSHFGFYANQFWPNGQPTIPKLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGKVFWIGILGSNTTWFWKLVEPYILEDVRDFTKAGVNIMRQDLTETQDINFCSESDE*