Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09725.t1 | XP_003611371.1 | 97.4 | 431 | 11 | 0 | 1 | 431 | 1 | 431 | 3.70E-242 | 847 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09725.t1 | O81816 | 33.9 | 401 | 248 | 4 | 42 | 429 | 9 | 405 | 6.6e-62 | 239.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09725.t1 | G7JXH2 | 97.4 | 431 | 11 | 0 | 1 | 431 | 1 | 431 | 2.7e-242 | 847.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene09725 | 0.809347 | 1.98E-50 | -1.69E-46 |
| MS.gene049170 | MS.gene09725 | 0.817194 | 3.74E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene09725 | 0.882393 | 1.08E-70 | -1.69E-46 |
| MS.gene049369 | MS.gene09725 | 0.890043 | 1.41E-73 | -1.69E-46 |
| MS.gene049396 | MS.gene09725 | 0.887353 | 1.54E-72 | -1.69E-46 |
| MS.gene049609 | MS.gene09725 | 0.837444 | 5.18E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene09725 | 0.846308 | 2.36E-59 | -1.69E-46 |
| MS.gene050060 | MS.gene09725 | 0.819762 | 9.79E-53 | -1.69E-46 |
| MS.gene050400 | MS.gene09725 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene09725 | -0.812107 | 5.01E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene09725 | 0.814987 | 1.16E-51 | -1.69E-46 |
| MS.gene050553 | MS.gene09725 | 0.808402 | 3.15E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene09725 | 0.860287 | 2.29E-63 | -1.69E-46 |
| MS.gene050670 | MS.gene09725 | 0.885143 | 1.05E-71 | -1.69E-46 |
| MS.gene050747 | MS.gene09725 | 0.822087 | 2.86E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene09725 | 0.844549 | 7.06E-59 | -1.69E-46 |
| MS.gene050809 | MS.gene09725 | -0.814883 | 1.23E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene09725 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene050812 | MS.gene09725 | 0.805434 | 1.34E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene09725 | 0.819637 | 1.05E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene09725 | 0.81406 | 1.87E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene09725 | 0.835615 | 1.51E-56 | -1.69E-46 |
| MS.gene05105 | MS.gene09725 | 0.883392 | 4.67E-71 | -1.69E-46 |
| MS.gene051360 | MS.gene09725 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene09725 | 0.808517 | 2.98E-50 | -1.69E-46 |
| MS.gene051521 | MS.gene09725 | 0.801948 | 7.08E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene09725 | 0.825951 | 3.54E-54 | -1.69E-46 |
| MS.gene051605 | MS.gene09725 | 0.821088 | 4.86E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene09725 | 0.843515 | 1.34E-58 | -1.69E-46 |
| MS.gene051692 | MS.gene09725 | 0.808261 | 3.38E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene09725 | 0.844419 | 7.65E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene09725 | 0.839397 | 1.62E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene09725 | 0.802574 | 5.26E-49 | -1.69E-46 |
| MS.gene051874 | MS.gene09725 | 0.843766 | 1.14E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene09725 | 0.808962 | 2.39E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene09725 | 0.843642 | 1.24E-58 | -1.69E-46 |
| MS.gene052135 | MS.gene09725 | 0.844069 | 9.50E-59 | -1.69E-46 |
| MS.gene052136 | MS.gene09725 | 0.856672 | 2.75E-62 | -1.69E-46 |
| MS.gene052188 | MS.gene09725 | 0.881475 | 2.33E-70 | -1.69E-46 |
| MS.gene052253 | MS.gene09725 | 0.835138 | 2.00E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene09725 | 0.850326 | 1.83E-60 | -1.69E-46 |
| MS.gene052322 | MS.gene09725 | 0.803209 | 3.89E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene09725 | 0.862337 | 5.44E-64 | -1.69E-46 |
| MS.gene052346 | MS.gene09725 | 0.835059 | 2.09E-56 | -1.69E-46 |
| MS.gene05240 | MS.gene09725 | -0.813657 | 2.29E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene09725 | 0.891647 | 3.28E-74 | -1.69E-46 |
| MS.gene052421 | MS.gene09725 | 0.857164 | 1.97E-62 | -1.69E-46 |
| MS.gene052469 | MS.gene09725 | 0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene09725 | 0.830055 | 3.64E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene09725 | 0.831805 | 1.36E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene09725 | 0.83732 | 5.57E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene09725 | 0.813807 | 2.12E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene09725 | 0.820464 | 6.77E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene09725 | 0.816347 | 5.80E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene09725 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene09725 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene052999 | MS.gene09725 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene09725 | 0.829942 | 3.88E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene09725 | 0.826903 | 2.10E-54 | -1.69E-46 |
| MS.gene05316 | MS.gene09725 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene09725 | 0.815607 | 8.48E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene09725 | 0.895654 | 7.80E-76 | -1.69E-46 |
| MS.gene053557 | MS.gene09725 | 0.821854 | 3.24E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene09725 | 0.843386 | 1.45E-58 | -1.69E-46 |
| MS.gene053758 | MS.gene09725 | 0.851882 | 6.64E-61 | -1.69E-46 |
| MS.gene053824 | MS.gene09725 | 0.826375 | 2.81E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene09725 | 0.895906 | 6.14E-76 | -1.69E-46 |
| MS.gene053916 | MS.gene09725 | 0.847751 | 9.48E-60 | -1.69E-46 |
| MS.gene054349 | MS.gene09725 | 0.829062 | 6.35E-55 | -1.69E-46 |
| MS.gene05494 | MS.gene09725 | 0.85002 | 2.22E-60 | -1.69E-46 |
| MS.gene054955 | MS.gene09725 | 0.816288 | 5.97E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene09725 | 0.871251 | 7.88E-67 | -1.69E-46 |
| MS.gene055116 | MS.gene09725 | 0.870485 | 1.41E-66 | -1.69E-46 |
| MS.gene055206 | MS.gene09725 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene09725 | 0.833266 | 5.89E-56 | -1.69E-46 |
| MS.gene055289 | MS.gene09725 | 0.834539 | 2.83E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene09725 | 0.832125 | 1.13E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene09725 | 0.805062 | 1.60E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene09725 | 0.841988 | 3.40E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene09725 | 0.854004 | 1.64E-61 | -1.69E-46 |
| MS.gene055744 | MS.gene09725 | 0.859824 | 3.16E-63 | -1.69E-46 |
| MS.gene055909 | MS.gene09725 | 0.84067 | 7.56E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene09725 | 0.835687 | 1.45E-56 | -1.69E-46 |
| MS.gene05592 | MS.gene09725 | 0.831184 | 1.93E-55 | -1.69E-46 |
| MS.gene056166 | MS.gene09725 | 0.834582 | 2.76E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene09725 | 0.87714 | 7.97E-69 | -1.69E-46 |
| MS.gene056511 | MS.gene09725 | 0.908885 | 1.05E-81 | -1.69E-46 |
| MS.gene056609 | MS.gene09725 | 0.818489 | 1.91E-52 | -1.69E-46 |
| MS.gene05664 | MS.gene09725 | 0.832423 | 9.54E-56 | -1.69E-46 |
| MS.gene056659 | MS.gene09725 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene09725 | 0.818767 | 1.65E-52 | -1.69E-46 |
| MS.gene056719 | MS.gene09725 | 0.818972 | 1.48E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene09725 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene057019 | MS.gene09725 | 0.813406 | 2.60E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene09725 | 0.856756 | 2.59E-62 | -1.69E-46 |
| MS.gene057086 | MS.gene09725 | 0.817426 | 3.32E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene09725 | 0.854588 | 1.11E-61 | -1.69E-46 |
| MS.gene057146 | MS.gene09725 | 0.810026 | 1.41E-50 | -1.69E-46 |
| MS.gene057310 | MS.gene09725 | 0.800651 | 1.30E-48 | -1.69E-46 |
| MS.gene057331 | MS.gene09725 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene05735 | MS.gene09725 | 0.822254 | 2.61E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene09725 | 0.82767 | 1.38E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene09725 | 0.806296 | 8.81E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene09725 | 0.831361 | 1.74E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene09725 | 0.826516 | 2.60E-54 | -1.69E-46 |
| MS.gene057450 | MS.gene09725 | 0.826713 | 2.33E-54 | -1.69E-46 |
| MS.gene057537 | MS.gene09725 | 0.834739 | 2.52E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene09725 | 0.881153 | 3.04E-70 | -1.69E-46 |
| MS.gene057749 | MS.gene09725 | 0.817218 | 3.69E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene09725 | 0.828094 | 1.09E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene09725 | 0.841095 | 5.85E-58 | -1.69E-46 |
| MS.gene057926 | MS.gene09725 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene09725 | 0.826073 | 3.31E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene09725 | 0.858428 | 8.30E-63 | -1.69E-46 |
| MS.gene058075 | MS.gene09725 | 0.812268 | 4.62E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene09725 | 0.805451 | 1.33E-49 | -1.69E-46 |
| MS.gene058120 | MS.gene09725 | 0.857708 | 1.36E-62 | -1.69E-46 |
| MS.gene058130 | MS.gene09725 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene09725 | 0.837612 | 4.69E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene09725 | 0.83221 | 1.08E-55 | -1.69E-46 |
| MS.gene058459 | MS.gene09725 | 0.823506 | 1.33E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene09725 | 0.849792 | 2.57E-60 | -1.69E-46 |
| MS.gene058838 | MS.gene09725 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene09725 | 0.883534 | 4.14E-71 | -1.69E-46 |
| MS.gene058948 | MS.gene09725 | 0.825427 | 4.71E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene09725 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene09725 | 0.826925 | 2.08E-54 | -1.69E-46 |
| MS.gene059285 | MS.gene09725 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene09725 | 0.803993 | 2.67E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene09725 | 0.82324 | 1.54E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene09725 | 0.824155 | 9.41E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene09725 | 0.881443 | 2.39E-70 | -1.69E-46 |
| MS.gene059368 | MS.gene09725 | 0.818925 | 1.52E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene09725 | 0.830479 | 2.87E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene09725 | 0.831563 | 1.56E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene09725 | 0.817154 | 3.82E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene09725 | 0.816641 | 4.98E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene09725 | 0.849337 | 3.45E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene09725 | 0.82427 | 8.84E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene09725 | 0.884977 | 1.21E-71 | -1.69E-46 |
| MS.gene059692 | MS.gene09725 | 0.863839 | 1.87E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene09725 | 0.864795 | 9.40E-65 | -1.69E-46 |
| MS.gene059711 | MS.gene09725 | 0.839259 | 1.76E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene09725 | 0.917266 | 6.54E-86 | -1.69E-46 |
| MS.gene060372 | MS.gene09725 | 0.840833 | 6.85E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene09725 | 0.85402 | 1.63E-61 | -1.69E-46 |
| MS.gene060804 | MS.gene09725 | 0.840229 | 9.86E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene09725 | 0.858215 | 9.60E-63 | -1.69E-46 |
| MS.gene060835 | MS.gene09725 | 0.859744 | 3.35E-63 | -1.69E-46 |
| MS.gene060837 | MS.gene09725 | 0.882729 | 8.16E-71 | -1.69E-46 |
| MS.gene06097 | MS.gene09725 | 0.855015 | 8.38E-62 | -1.69E-46 |
| MS.gene060981 | MS.gene09725 | 0.811703 | 6.13E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene09725 | 0.853089 | 3.01E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene09725 | -0.820141 | 8.02E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene09725 | 0.873178 | 1.80E-67 | -1.69E-46 |
| MS.gene061159 | MS.gene09725 | 0.801274 | 9.73E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09725.t1 | MTR_5g013250 | 97.448 | 431 | 11 | 0 | 1 | 431 | 1 | 431 | 0.0 | 867 |
| MS.gene09725.t1 | MTR_5g013260 | 85.649 | 439 | 53 | 5 | 3 | 431 | 1 | 439 | 0.0 | 748 |
| MS.gene09725.t1 | MTR_1g112780 | 41.013 | 395 | 221 | 6 | 38 | 424 | 8 | 398 | 3.80e-90 | 290 |
| MS.gene09725.t1 | MTR_1g112780 | 38.250 | 400 | 229 | 6 | 46 | 430 | 401 | 797 | 2.08e-72 | 243 |
| MS.gene09725.t1 | MTR_1g112740 | 39.500 | 400 | 231 | 5 | 39 | 430 | 2 | 398 | 3.18e-82 | 258 |
| MS.gene09725.t1 | MTR_1g090667 | 38.424 | 406 | 235 | 6 | 37 | 430 | 4 | 406 | 1.43e-79 | 252 |
| MS.gene09725.t1 | MTR_1g112750 | 35.627 | 407 | 247 | 7 | 36 | 430 | 3 | 406 | 1.08e-65 | 216 |
| MS.gene09725.t1 | MTR_4g035655 | 32.481 | 391 | 247 | 6 | 22 | 400 | 464 | 849 | 3.24e-57 | 202 |
| MS.gene09725.t1 | MTR_4g035655 | 32.565 | 347 | 216 | 7 | 34 | 368 | 2 | 342 | 3.22e-50 | 182 |
| MS.gene09725.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 5.12e-22 | 98.2 |
| MS.gene09725.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 5.79e-22 | 98.2 |
| MS.gene09725.t1 | MTR_4g022850 | 30.081 | 246 | 157 | 9 | 139 | 379 | 166 | 401 | 5.99e-22 | 98.2 |
| MS.gene09725.t1 | MTR_5g017350 | 27.222 | 360 | 229 | 15 | 42 | 379 | 78 | 426 | 2.50e-21 | 96.7 |
| MS.gene09725.t1 | MTR_5g017350 | 27.500 | 360 | 228 | 15 | 42 | 379 | 78 | 426 | 3.73e-21 | 96.3 |
| MS.gene09725.t1 | MTR_5g017350 | 27.500 | 360 | 228 | 15 | 42 | 379 | 78 | 426 | 4.55e-21 | 96.3 |
| MS.gene09725.t1 | MTR_5g017350 | 27.500 | 360 | 228 | 15 | 42 | 379 | 78 | 426 | 4.90e-21 | 96.3 |
| MS.gene09725.t1 | MTR_4g022850 | 32.000 | 150 | 95 | 4 | 245 | 393 | 159 | 302 | 5.93e-15 | 76.3 |
| MS.gene09725.t1 | MTR_1g011690 | 23.797 | 395 | 246 | 12 | 38 | 394 | 6 | 383 | 1.13e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09725.t1 | AT2G35660 | 73.980 | 392 | 102 | 0 | 38 | 429 | 43 | 434 | 0.0 | 624 |
| MS.gene09725.t1 | AT2G29720 | 66.667 | 357 | 119 | 0 | 52 | 408 | 55 | 411 | 0.0 | 521 |
| MS.gene09725.t1 | AT2G35660 | 73.125 | 320 | 86 | 0 | 110 | 429 | 1 | 320 | 0.0 | 510 |
| MS.gene09725.t1 | AT2G35660 | 73.125 | 320 | 86 | 0 | 110 | 429 | 1 | 320 | 0.0 | 510 |
| MS.gene09725.t1 | AT5G05320 | 34.877 | 367 | 224 | 3 | 40 | 394 | 7 | 370 | 6.44e-76 | 242 |
| MS.gene09725.t1 | AT4G38540 | 33.915 | 401 | 248 | 4 | 42 | 429 | 9 | 405 | 2.14e-71 | 231 |
| MS.gene09725.t1 | AT4G15760 | 32.782 | 363 | 214 | 11 | 50 | 394 | 39 | 389 | 3.81e-49 | 172 |
| MS.gene09725.t1 | AT4G15760 | 31.806 | 371 | 219 | 10 | 50 | 394 | 39 | 401 | 3.00e-48 | 171 |
| MS.gene09725.t1 | AT4G15765 | 26.578 | 301 | 171 | 5 | 42 | 335 | 6 | 263 | 1.07e-23 | 100 |
| MS.gene09725.t1 | AT5G67030 | 27.434 | 339 | 212 | 14 | 38 | 356 | 79 | 403 | 1.01e-22 | 101 |
| MS.gene09725.t1 | AT5G67030 | 27.729 | 339 | 211 | 14 | 38 | 356 | 79 | 403 | 1.06e-22 | 101 |
| MS.gene09725.t1 | AT5G11330 | 23.018 | 391 | 253 | 10 | 38 | 394 | 4 | 380 | 1.03e-11 | 66.6 |
Find 130 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATACCTTATTGGAATTCT+TGG | 0.212200 | 5.3:-6295555 | MS.gene09725:CDS |
| AGATTGAGCCTTGATTAATT+TGG | 0.234422 | 5.3:+6296638 | None:intergenic |
| ATGTCTAAACAGATTGTAAT+AGG | 0.240740 | 5.3:-6295244 | MS.gene09725:intron |
| CGATTACAACATGTTCCTTT+TGG | 0.248040 | 5.3:+6296610 | None:intergenic |
| TCCAAATGGGGATACCTTAT+TGG | 0.254372 | 5.3:-6295564 | MS.gene09725:CDS |
| TGCCCAAGATTTGGAGTCAT+TGG | 0.307226 | 5.3:+6294721 | None:intergenic |
| CATGCTCCTTGCCCAAGATT+TGG | 0.307845 | 5.3:+6294712 | None:intergenic |
| TTCATTATGTTTAGTAGCTC+TGG | 0.317013 | 5.3:+6294859 | None:intergenic |
| ATCCTCTTCTTTGAAATTGA+AGG | 0.328744 | 5.3:+6296172 | None:intergenic |
| TAGACTTTGGTTGGAGAAAC+AGG | 0.332821 | 5.3:+6295058 | None:intergenic |
| CACCCAATGACTCCAAATCT+TGG | 0.340691 | 5.3:-6294724 | MS.gene09725:CDS |
| AGTGGAGAGGAGGGTACTTT+TGG | 0.353165 | 5.3:-6295657 | MS.gene09725:CDS |
| CCAACTTGTCATACCAGAAT+TGG | 0.356587 | 5.3:-6296675 | MS.gene09725:CDS |
| TCCAATAAGGTATCCCCATT+TGG | 0.359215 | 5.3:+6295563 | None:intergenic |
| ATCGTGGGTGGTGGCATTGC+AGG | 0.363319 | 5.3:-6296591 | MS.gene09725:CDS |
| TCTCCACTGCACGCACCTCT+TGG | 0.364886 | 5.3:+6295672 | None:intergenic |
| GCCCAAGATTTGGAGTCATT+GGG | 0.380043 | 5.3:+6294722 | None:intergenic |
| CCCATCCAAGAATTCCAATA+AGG | 0.383303 | 5.3:+6295550 | None:intergenic |
| CTAAGGATCTAGTGGAAAAC+TGG | 0.384760 | 5.3:-6294885 | MS.gene09725:CDS |
| GTGAATTACATCTACGGAAA+AGG | 0.386225 | 5.3:-6295100 | MS.gene09725:CDS |
| ACTTCTGAGAGCTCCAATTC+TGG | 0.395076 | 5.3:+6296662 | None:intergenic |
| AGTAAGGCTTGGTCCATTGC+TGG | 0.401844 | 5.3:-6294473 | MS.gene09725:CDS |
| TGGTGTTCGGTCTCTTGTGC+TGG | 0.403207 | 5.3:-6296457 | MS.gene09725:CDS |
| GAATTCTCAGGCTTGGTGTT+CGG | 0.408757 | 5.3:-6296470 | MS.gene09725:intron |
| GAAGAATATTGAATGCTATC+AGG | 0.408814 | 5.3:+6295611 | None:intergenic |
| ATAGCATTCAATATTCTTCA+CGG | 0.412492 | 5.3:-6295607 | MS.gene09725:CDS |
| CACTCCACCCATTCTTGAAA+AGG | 0.414267 | 5.3:+6296394 | None:intergenic |
| ATGTTTGCCCGTATGGTTAG+TGG | 0.417439 | 5.3:+6294568 | None:intergenic |
| CGTTGGTGGATCGATGGCTT+TGG | 0.417946 | 5.3:-6294804 | MS.gene09725:CDS |
| AAAAGGTTGTCCATCTGAAT+AGG | 0.421657 | 5.3:+6295132 | None:intergenic |
| ACGGGCAAACATTGTGGGTT+CGG | 0.430334 | 5.3:-6294557 | MS.gene09725:CDS |
| ACCCACAATGTTTGCCCGTA+TGG | 0.441085 | 5.3:+6294561 | None:intergenic |
| TGTGGGTTCGGCTTTGCAAT+GGG | 0.445153 | 5.3:-6294545 | MS.gene09725:CDS |
| TTGTCATACCTAAGCTAGTA+AGG | 0.446445 | 5.3:-6294489 | MS.gene09725:CDS |
| ATTTGGAGTCATTGGGTGCC+AGG | 0.447196 | 5.3:+6294729 | None:intergenic |
| AAGATTGAACCAAGTCCAAA+TGG | 0.447760 | 5.3:-6295578 | MS.gene09725:CDS |
| ACTCAATATTTAGAAATTCA+AGG | 0.453429 | 5.3:-6296336 | MS.gene09725:CDS |
| AAGGTATCCCCATTTGGACT+TGG | 0.464282 | 5.3:+6295569 | None:intergenic |
| ACAACTCTACCTGCAGAAAC+AGG | 0.465698 | 5.3:+6294766 | None:intergenic |
| TAATTCACCCGTGCTTCAAA+AGG | 0.468928 | 5.3:+6295115 | None:intergenic |
| ACCTTATTGGAATTCTTGGA+TGG | 0.470171 | 5.3:-6295551 | MS.gene09725:CDS |
| TTTCTCCAACCAAAGTCTAC+TGG | 0.470585 | 5.3:-6295054 | MS.gene09725:CDS |
| CAACTGCTCTATCCCTTCAC+AGG | 0.470796 | 5.3:-6296563 | MS.gene09725:intron |
| TGTCTAAACAGATTGTAATA+GGG | 0.475468 | 5.3:-6295243 | MS.gene09725:intron |
| TGCCTTCAATTTCAAAGAAG+AGG | 0.476217 | 5.3:-6296174 | MS.gene09725:CDS |
| TGCTTCAACAGTTCATCTCC+AGG | 0.477142 | 5.3:-6295025 | MS.gene09725:intron |
| GGCTCAATCTTCAGTCCAAA+AGG | 0.477210 | 5.3:-6296625 | MS.gene09725:CDS |
| GGACCAAGCCTTACTAGCTT+AGG | 0.477240 | 5.3:+6294481 | None:intergenic |
| CACCGGATGACACTATAATC+AGG | 0.478910 | 5.3:-6294831 | MS.gene09725:CDS |
| TGAATTACATCTACGGAAAA+GGG | 0.482581 | 5.3:-6295099 | MS.gene09725:CDS |
| ACCCAATGACTCCAAATCTT+GGG | 0.482693 | 5.3:-6294723 | MS.gene09725:CDS |
| TGGAGTGTACTTGATTCAAT+TGG | 0.482722 | 5.3:-6296378 | MS.gene09725:CDS |
| ACCATACGGGCAAACATTGT+GGG | 0.483763 | 5.3:-6294562 | MS.gene09725:CDS |
| AGGTGCGTGCAGTGGAGAGG+AGG | 0.485424 | 5.3:-6295667 | MS.gene09725:CDS |
| GCTTGCTTCTTTAGCACCGA+TGG | 0.486635 | 5.3:+6294907 | None:intergenic |
| CTTCTTTAGCACCGATGGCT+CGG | 0.487707 | 5.3:+6294912 | None:intergenic |
| ACCCGCTGGTGTGTTCTGTT+AGG | 0.488168 | 5.3:-6294519 | MS.gene09725:CDS |
| AGATTGAACCAAGTCCAAAT+GGG | 0.490772 | 5.3:-6295577 | MS.gene09725:CDS |
| GCACAATGACCAACAAACTT+TGG | 0.492071 | 5.3:+6295172 | None:intergenic |
| CAGAAGTTCCAAATTAATCA+AGG | 0.492791 | 5.3:-6296646 | MS.gene09725:CDS |
| GAGAATATGGCAATGAAAGA+TGG | 0.497368 | 5.3:-6294603 | MS.gene09725:CDS |
| CATTCAATATTCTTCACGGT+TGG | 0.499725 | 5.3:-6295603 | MS.gene09725:CDS |
| TTGTGGGTTCGGCTTTGCAA+TGG | 0.501115 | 5.3:-6294546 | MS.gene09725:CDS |
| GAAACAGGTGGACTTATTGA+TGG | 0.501429 | 5.3:+6294781 | None:intergenic |
| GCAGATAAACCAGTAGACTT+TGG | 0.503117 | 5.3:+6295045 | None:intergenic |
| CAGTCAGAGTCACTTCGAAC+AGG | 0.503637 | 5.3:-6296432 | MS.gene09725:CDS |
| CTCAATATTTAGAAATTCAA+GGG | 0.504248 | 5.3:-6296335 | MS.gene09725:intron |
| ATAAACCAGTAGACTTTGGT+TGG | 0.504282 | 5.3:+6295049 | None:intergenic |
| CCAATTCTGGTATGACAAGT+TGG | 0.517736 | 5.3:+6296675 | None:intergenic |
| AACCATACGGGCAAACATTG+TGG | 0.523320 | 5.3:-6294563 | MS.gene09725:CDS |
| TTTGCAATGGGACAACCCGC+TGG | 0.523400 | 5.3:-6294533 | MS.gene09725:CDS |
| TATAATCAGGACTCCGTTGG+TGG | 0.527265 | 5.3:-6294818 | MS.gene09725:CDS |
| ATAAGTCCACCTGTTTCTGC+AGG | 0.528684 | 5.3:-6294775 | MS.gene09725:CDS |
| GCATATTTCCACTAACCATA+CGG | 0.529804 | 5.3:-6294576 | MS.gene09725:CDS |
| GTCCTGATTATAGTGTCATC+CGG | 0.533366 | 5.3:+6294829 | None:intergenic |
| TCCTAACAGAACACACCAGC+GGG | 0.539378 | 5.3:+6294518 | None:intergenic |
| CCTTATTGGAATTCTTGGAT+GGG | 0.539919 | 5.3:-6295550 | MS.gene09725:CDS |
| AGGAGCATGTTGTGCTCTTG+AGG | 0.544378 | 5.3:-6294698 | MS.gene09725:CDS |
| GCAGGTAGAGTTGTACTCGT+TGG | 0.545159 | 5.3:-6294757 | MS.gene09725:CDS |
| GAAGCAAGCTAAGGATCTAG+TGG | 0.546205 | 5.3:-6294893 | MS.gene09725:CDS |
| TTGTACTCGTTGGAGACGCC+TGG | 0.546377 | 5.3:-6294747 | MS.gene09725:CDS |
| TCCTAAAATAACCGAGCCAT+CGG | 0.546688 | 5.3:-6294923 | MS.gene09725:CDS |
| AAGAGGTGCGTGCAGTGGAG+AGG | 0.550530 | 5.3:-6295670 | MS.gene09725:CDS |
| ACTCCACCCATTCTTGAAAA+GGG | 0.552204 | 5.3:+6296395 | None:intergenic |
| CAGCCAAGAGGTGCGTGCAG+TGG | 0.558479 | 5.3:-6295675 | MS.gene09725:CDS |
| ATACCTAAGCTAGTAAGGCT+TGG | 0.561443 | 5.3:-6294484 | MS.gene09725:CDS |
| GGACTCCGTTGGTGGATCGA+TGG | 0.562109 | 5.3:-6294810 | MS.gene09725:CDS |
| AAATTAGTGTGCTCCAGCAA+TGG | 0.570234 | 5.3:+6294460 | None:intergenic |
| AGACGAGGTTGTTGTAGCCA+TGG | 0.572720 | 5.3:+6296716 | None:intergenic |
| AAGGAACATGTTGTAATCGT+GGG | 0.573031 | 5.3:-6296606 | MS.gene09725:CDS |
| AAAGGAACATGTTGTAATCG+TGG | 0.573135 | 5.3:-6296607 | MS.gene09725:CDS |
| GGACTTGCCTCCTATTCAGA+TGG | 0.575892 | 5.3:-6295142 | MS.gene09725:CDS |
| GCACGGGTGAATTACATCTA+CGG | 0.577218 | 5.3:-6295106 | MS.gene09725:CDS |
| TGGGTCTAAACTAGTTGCAA+AGG | 0.577733 | 5.3:-6295531 | MS.gene09725:intron |
| ATTTCAAAGAAGAGGATGAA+AGG | 0.580176 | 5.3:-6296166 | MS.gene09725:intron |
| CACTATAATCAGGACTCCGT+TGG | 0.584665 | 5.3:-6294821 | MS.gene09725:CDS |
| ATTATGTTTAGTAGCTCTGG+AGG | 0.585207 | 5.3:+6294862 | None:intergenic |
| AATCCCATCCACTTAGCTAT+CGG | 0.586271 | 5.3:+6295202 | None:intergenic |
| GGTGCGTGCAGTGGAGAGGA+GGG | 0.589579 | 5.3:-6295666 | MS.gene09725:CDS |
| ATCACCGATAGCTAAGTGGA+TGG | 0.589651 | 5.3:-6295206 | MS.gene09725:CDS |
| CATATTTCCACTAACCATAC+GGG | 0.594920 | 5.3:-6294575 | MS.gene09725:CDS |
| ATGACTCCAAATCTTGGGCA+AGG | 0.595031 | 5.3:-6294718 | MS.gene09725:CDS |
| AGGTTGTCCATCTGAATAGG+AGG | 0.597237 | 5.3:+6295135 | None:intergenic |
| TACGGAAAAGGGTTACGCGC+AGG | 0.600680 | 5.3:-6295088 | MS.gene09725:CDS |
| GTTGGTCATTGTGCTTTCCG+TGG | 0.600904 | 5.3:-6295163 | MS.gene09725:CDS |
| CATGTTGTAATCGTGGGTGG+TGG | 0.604156 | 5.3:-6296600 | MS.gene09725:CDS |
| CAGATTGTAATAGGGTGCGA+CGG | 0.604784 | 5.3:-6295235 | MS.gene09725:CDS |
| AAACATAATGAATTCTACAC+CGG | 0.605859 | 5.3:-6294848 | MS.gene09725:CDS |
| TTGTGCTCTTGAGGATGCAG+TGG | 0.611787 | 5.3:-6294689 | MS.gene09725:CDS |
| TTCGATCACCGATAGCTAAG+TGG | 0.615756 | 5.3:-6295210 | MS.gene09725:CDS |
| TCAGAGTCACTTCGAACAGG+TGG | 0.621486 | 5.3:-6296429 | MS.gene09725:CDS |
| ATCTGAATTGAACATGTCCA+TGG | 0.625416 | 5.3:-6296733 | None:intergenic |
| CTAGAGTTGAAACCTGTGAA+GGG | 0.625644 | 5.3:+6296551 | None:intergenic |
| TCACCGATAGCTAAGTGGAT+GGG | 0.628133 | 5.3:-6295205 | MS.gene09725:CDS |
| GGTGCTAAAGAAGCAAGCTA+AGG | 0.629803 | 5.3:-6294902 | MS.gene09725:CDS |
| GCTAGAGTTGAAACCTGTGA+AGG | 0.639052 | 5.3:+6296550 | None:intergenic |
| CAAAGCCATCGATCCACCAA+CGG | 0.639408 | 5.3:+6294805 | None:intergenic |
| GATTGAACCAAGTCCAAATG+GGG | 0.644561 | 5.3:-6295576 | MS.gene09725:CDS |
| ACGGATATTGTGCAGCCAAG+AGG | 0.645003 | 5.3:-6295687 | MS.gene09725:intron |
| CTGAATAGGAGGCAAGTCCA+CGG | 0.650582 | 5.3:+6295146 | None:intergenic |
| ATGGTGGTGAAGTCTGAGGA+TGG | 0.653495 | 5.3:-6296209 | MS.gene09725:CDS |
| GAATATTGAATGCTATCAGG+AGG | 0.654073 | 5.3:+6295614 | None:intergenic |
| GAAGGGATAGAGCAGTTGCA+AGG | 0.666482 | 5.3:+6296568 | None:intergenic |
| ATATCAGCTGTACAGGATGG+TGG | 0.671683 | 5.3:-6296225 | MS.gene09725:intron |
| ACTCTACCTGCAGAAACAGG+TGG | 0.672264 | 5.3:+6294769 | None:intergenic |
| CAGGATGGTGGTGAAGTCTG+AGG | 0.679338 | 5.3:-6296213 | MS.gene09725:CDS |
| TTTAAGAATCATAAAAGACG+AGG | 0.685989 | 5.3:+6296701 | None:intergenic |
| TTCCTAACAGAACACACCAG+CGG | 0.695061 | 5.3:+6294517 | None:intergenic |
| ATGGTTAGTGGAAATATGCG+CGG | 0.713230 | 5.3:+6294580 | None:intergenic |
| GAACATGTTGTAATCGTGGG+TGG | 0.726429 | 5.3:-6296603 | MS.gene09725:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATGAAATGCATAA+CGG | - | chr5.3:6295449-6295468 | MS.gene09725:intron | 15.0% |
| !! | AGTTATTATCAAAGTTATTA+TGG | + | chr5.3:6295033-6295052 | None:intergenic | 15.0% |
| !! | TTGTAAATCTAATAAAATCA+TGG | + | chr5.3:6295700-6295719 | None:intergenic | 15.0% |
| !!! | TTTTATTAGATTTACAAACT+TGG | - | chr5.3:6295703-6295722 | MS.gene09725:intron | 15.0% |
| !! | ACTCAATATTTAGAAATTCA+AGG | - | chr5.3:6294819-6294838 | MS.gene09725:CDS | 20.0% |
| !! | ATTAAGAAGTGAAAAATTGT+GGG | - | chr5.3:6295329-6295348 | MS.gene09725:intron | 20.0% |
| !! | CTCAATATTTAGAAATTCAA+GGG | - | chr5.3:6294820-6294839 | MS.gene09725:CDS | 20.0% |
| !! | TATTAAGAAGTGAAAAATTG+TGG | - | chr5.3:6295328-6295347 | MS.gene09725:intron | 20.0% |
| !! | TTTCGTTGTTAAATTATTGT+TGG | - | chr5.3:6295423-6295442 | MS.gene09725:intron | 20.0% |
| !!! | TCAATTTGTTAACACTTTTT+AGG | + | chr5.3:6295887-6295906 | None:intergenic | 20.0% |
| !!! | TTTTCACTTCTTAATACAAT+GGG | + | chr5.3:6295324-6295343 | None:intergenic | 20.0% |
| !!! | TTTTTCACTTCTTAATACAA+TGG | + | chr5.3:6295325-6295344 | None:intergenic | 20.0% |
| ! | AAACATAATGAATTCTACAC+CGG | - | chr5.3:6296307-6296326 | MS.gene09725:intron | 25.0% |
| ! | AATATATGCATTGTGCAATA+AGG | + | chr5.3:6294887-6294906 | None:intergenic | 25.0% |
| ! | ATAGCATTCAATATTCTTCA+CGG | - | chr5.3:6295548-6295567 | MS.gene09725:CDS | 25.0% |
| ! | ATGTCTAAACAGATTGTAAT+AGG | - | chr5.3:6295911-6295930 | MS.gene09725:intron | 25.0% |
| ! | ATTGTAATTTATGGTGTGTT+TGG | - | chr5.3:6295653-6295672 | MS.gene09725:CDS | 25.0% |
| ! | GAATTATGTTTAAACACAGT+CGG | + | chr5.3:6295753-6295772 | None:intergenic | 25.0% |
| ! | GTTACTAATAAGTCCATATA+TGG | - | chr5.3:6296155-6296174 | MS.gene09725:intron | 25.0% |
| ! | TATTAATCTAACCACATGAT+TGG | - | chr5.3:6295793-6295812 | MS.gene09725:intron | 25.0% |
| ! | TATTACAATCTGTTTAGACA+TGG | + | chr5.3:6295912-6295931 | None:intergenic | 25.0% |
| ! | TCAAATGATAAAATGATGCA+TGG | + | chr5.3:6295376-6295395 | None:intergenic | 25.0% |
| ! | TCAGGTAATTTAACCATATA+TGG | + | chr5.3:6296171-6296190 | None:intergenic | 25.0% |
| ! | TGAAAAATAGTTGAGTTCAA+TGG | - | chr5.3:6296205-6296224 | MS.gene09725:CDS | 25.0% |
| ! | TGTCTAAACAGATTGTAATA+GGG | - | chr5.3:6295912-6295931 | MS.gene09725:intron | 25.0% |
| ! | TTATCCACACATCATATATA+TGG | + | chr5.3:6295211-6295230 | None:intergenic | 25.0% |
| ! | TTCATATGAACAATAAACTC+AGG | + | chr5.3:6296189-6296208 | None:intergenic | 25.0% |
| ! | TTTAAGAATCATAAAAGACG+AGG | + | chr5.3:6294457-6294476 | None:intergenic | 25.0% |
| !! | AGGTTAGTCATTGTAATTTA+TGG | - | chr5.3:6295644-6295663 | MS.gene09725:CDS | 25.0% |
| !! | ATCTTAGATATTTTCACTAC+TGG | - | chr5.3:6295242-6295261 | MS.gene09725:intron | 25.0% |
| !!! | ATCATTTGAGTTGTACTAAT+GGG | - | chr5.3:6295387-6295406 | MS.gene09725:intron | 25.0% |
| !!! | TATCATTTGAGTTGTACTAA+TGG | - | chr5.3:6295386-6295405 | MS.gene09725:intron | 25.0% |
| AACTTGGTTGACAAAACATT+TGG | - | chr5.3:6295719-6295738 | MS.gene09725:intron | 30.0% | |
| AGATTGAGCCTTGATTAATT+TGG | + | chr5.3:6294520-6294539 | None:intergenic | 30.0% | |
| ATAAAATGATGCATGGACAT+CGG | + | chr5.3:6295369-6295388 | None:intergenic | 30.0% | |
| ATTTCAAAGAAGAGGATGAA+AGG | - | chr5.3:6294989-6295008 | MS.gene09725:intron | 30.0% | |
| CAGAAGTTCCAAATTAATCA+AGG | - | chr5.3:6294509-6294528 | MS.gene09725:CDS | 30.0% | |
| GAAGAATATTGAATGCTATC+AGG | + | chr5.3:6295547-6295566 | None:intergenic | 30.0% | |
| GTTAGTGCAGTATTTGATAT+TGG | - | chr5.3:6295149-6295168 | MS.gene09725:CDS | 30.0% | |
| TGAATTACATCTACGGAAAA+GGG | - | chr5.3:6296056-6296075 | MS.gene09725:intron | 30.0% | |
| TTCATTATGTTTAGTAGCTC+TGG | + | chr5.3:6296299-6296318 | None:intergenic | 30.0% | |
| ! | ATTTGATATTGGTGCTTGAT+AGG | - | chr5.3:6295160-6295179 | MS.gene09725:CDS | 30.0% |
| ! | TTTTCTTCTTCCTACCAAAT+AGG | - | chr5.3:6295280-6295299 | MS.gene09725:intron | 30.0% |
| ! | TTTTGTGCAGTATGTTTTCA+GGG | + | chr5.3:6295825-6295844 | None:intergenic | 30.0% |
| !! | ATCCTCTTCTTTGAAATTGA+AGG | + | chr5.3:6294986-6295005 | None:intergenic | 30.0% |
| !!! | TATATGGATGGACCTTTTTT+TGG | + | chr5.3:6295195-6295214 | None:intergenic | 30.0% |
| AAAAGGTTGTCCATCTGAAT+AGG | + | chr5.3:6296026-6296045 | None:intergenic | 35.0% | |
| AAAGGAACATGTTGTAATCG+TGG | - | chr5.3:6294548-6294567 | MS.gene09725:CDS | 35.0% | |
| AAATAGTTGAGTTCAATGGC+AGG | - | chr5.3:6296209-6296228 | MS.gene09725:CDS | 35.0% | |
| AAGATTGAACCAAGTCCAAA+TGG | - | chr5.3:6295577-6295596 | MS.gene09725:CDS | 35.0% | |
| AAGGAACATGTTGTAATCGT+GGG | - | chr5.3:6294549-6294568 | MS.gene09725:CDS | 35.0% | |
| ACCTTATTGGAATTCTTGGA+TGG | - | chr5.3:6295604-6295623 | MS.gene09725:CDS | 35.0% | |
| ACTTCTGACTGAAAATGTGT+TGG | - | chr5.3:6295066-6295085 | MS.gene09725:CDS | 35.0% | |
| AGATTGAACCAAGTCCAAAT+GGG | - | chr5.3:6295578-6295597 | MS.gene09725:CDS | 35.0% | |
| ATAAACCAGTAGACTTTGGT+TGG | + | chr5.3:6296109-6296128 | None:intergenic | 35.0% | |
| ATAATATCAGCTGTACAGGA+TGG | - | chr5.3:6294927-6294946 | MS.gene09725:CDS | 35.0% | |
| CATATTTCCACTAACCATAC+GGG | - | chr5.3:6296580-6296599 | MS.gene09725:CDS | 35.0% | |
| CATTCAATATTCTTCACGGT+TGG | - | chr5.3:6295552-6295571 | MS.gene09725:CDS | 35.0% | |
| CCACACATCATATATATGGA+TGG | + | chr5.3:6295207-6295226 | None:intergenic | 35.0% | |
| CCATCCATATATATGATGTG+TGG | - | chr5.3:6295204-6295223 | MS.gene09725:CDS | 35.0% | |
| CCTTATTGGAATTCTTGGAT+GGG | - | chr5.3:6295605-6295624 | MS.gene09725:CDS | 35.0% | |
| CTGAAAACATACTGCACAAA+AGG | - | chr5.3:6295824-6295843 | MS.gene09725:intron | 35.0% | |
| GAATATTGAATGCTATCAGG+AGG | + | chr5.3:6295544-6295563 | None:intergenic | 35.0% | |
| GAGAATATGGCAATGAAAGA+TGG | - | chr5.3:6296552-6296571 | MS.gene09725:intron | 35.0% | |
| GCATATTTCCACTAACCATA+CGG | - | chr5.3:6296579-6296598 | MS.gene09725:CDS | 35.0% | |
| GGATACCTTATTGGAATTCT+TGG | - | chr5.3:6295600-6295619 | MS.gene09725:CDS | 35.0% | |
| GTGAATTACATCTACGGAAA+AGG | - | chr5.3:6296055-6296074 | MS.gene09725:intron | 35.0% | |
| GTTCATAATATCAGCTGTAC+AGG | - | chr5.3:6294923-6294942 | MS.gene09725:CDS | 35.0% | |
| TAAAATGATGCATGGACATC+GGG | + | chr5.3:6295368-6295387 | None:intergenic | 35.0% | |
| TAGGACTAAAGCTTCAGAAT+TGG | + | chr5.3:6295868-6295887 | None:intergenic | 35.0% | |
| TGCCTTCAATTTCAAAGAAG+AGG | - | chr5.3:6294981-6295000 | MS.gene09725:intron | 35.0% | |
| TGGACTTATTAGTAACAACC+TGG | + | chr5.3:6296151-6296170 | None:intergenic | 35.0% | |
| TGGAGTGTACTTGATTCAAT+TGG | - | chr5.3:6294777-6294796 | MS.gene09725:CDS | 35.0% | |
| TTGTACTAATGGGACGTTAT+TGG | - | chr5.3:6295397-6295416 | MS.gene09725:intron | 35.0% | |
| TTGTCATACCTAAGCTAGTA+AGG | - | chr5.3:6296666-6296685 | MS.gene09725:CDS | 35.0% | |
| ! | CGATTACAACATGTTCCTTT+TGG | + | chr5.3:6294548-6294567 | None:intergenic | 35.0% |
| ! | CTTTTGTGCAGTATGTTTTC+AGG | + | chr5.3:6295826-6295845 | None:intergenic | 35.0% |
| ! | TTTTCTGAGCCAAAGTTTGT+TGG | - | chr5.3:6295974-6295993 | MS.gene09725:intron | 35.0% |
| !! | ACATTTTCAGTCAGAAGTGT+TGG | + | chr5.3:6295064-6295083 | None:intergenic | 35.0% |
| !! | ATTATGTTTAGTAGCTCTGG+AGG | + | chr5.3:6296296-6296315 | None:intergenic | 35.0% |
| !! | GAAGACGCTTTTAGAGAATA+TGG | - | chr5.3:6296539-6296558 | MS.gene09725:intron | 35.0% |
| AAAATGATGCATGGACATCG+GGG | + | chr5.3:6295367-6295386 | None:intergenic | 40.0% | |
| AAATTAGTGTGCTCCAGCAA+TGG | + | chr5.3:6296698-6296717 | None:intergenic | 40.0% | |
| AATCCCATCCACTTAGCTAT+CGG | + | chr5.3:6295956-6295975 | None:intergenic | 40.0% | |
| ACCCAATGACTCCAAATCTT+GGG | - | chr5.3:6296432-6296451 | MS.gene09725:CDS | 40.0% | |
| ACTCCACCCATTCTTGAAAA+GGG | + | chr5.3:6294763-6294782 | None:intergenic | 40.0% | |
| ATACCTAAGCTAGTAAGGCT+TGG | - | chr5.3:6296671-6296690 | MS.gene09725:CDS | 40.0% | |
| ATGGTTAGTGGAAATATGCG+CGG | + | chr5.3:6296578-6296597 | None:intergenic | 40.0% | |
| CCAACTTGTCATACCAGAAT+TGG | - | chr5.3:6294480-6294499 | MS.gene09725:CDS | 40.0% | |
| CCAATTCTGGTATGACAAGT+TGG | + | chr5.3:6294483-6294502 | None:intergenic | 40.0% | |
| CCCATCCAAGAATTCCAATA+AGG | + | chr5.3:6295608-6295627 | None:intergenic | 40.0% | |
| CTAAGGATCTAGTGGAAAAC+TGG | - | chr5.3:6296270-6296289 | MS.gene09725:intron | 40.0% | |
| CTAGAGTTGAAACCTGTGAA+GGG | + | chr5.3:6294607-6294626 | None:intergenic | 40.0% | |
| GATTGAACCAAGTCCAAATG+GGG | - | chr5.3:6295579-6295598 | MS.gene09725:CDS | 40.0% | |
| GCACAATGACCAACAAACTT+TGG | + | chr5.3:6295986-6296005 | None:intergenic | 40.0% | |
| GCAGATAAACCAGTAGACTT+TGG | + | chr5.3:6296113-6296132 | None:intergenic | 40.0% | |
| GTCCTGATTATAGTGTCATC+CGG | + | chr5.3:6296329-6296348 | None:intergenic | 40.0% | |
| TAATTCACCCGTGCTTCAAA+AGG | + | chr5.3:6296043-6296062 | None:intergenic | 40.0% | |
| TAGACTTTGGTTGGAGAAAC+AGG | + | chr5.3:6296100-6296119 | None:intergenic | 40.0% | |
| TATATTAGCTGAGCTTGAGC+TGG | - | chr5.3:6294901-6294920 | MS.gene09725:CDS | 40.0% | |
| TCCAAATGGGGATACCTTAT+TGG | - | chr5.3:6295591-6295610 | MS.gene09725:CDS | 40.0% | |
| TCCTAAAATAACCGAGCCAT+CGG | - | chr5.3:6296232-6296251 | MS.gene09725:intron | 40.0% | |
| TGGGTCTAAACTAGTTGCAA+AGG | - | chr5.3:6295624-6295643 | MS.gene09725:CDS | 40.0% | |
| TTGTGTTGAATTCTCAGGCT+TGG | - | chr5.3:6294678-6294697 | MS.gene09725:CDS | 40.0% | |
| TTTCTCCAACCAAAGTCTAC+TGG | - | chr5.3:6296101-6296120 | MS.gene09725:intron | 40.0% | |
| ! | CTCGTGTTGGTATCAAACAT+TGG | + | chr5.3:6295105-6295124 | None:intergenic | 40.0% |
| ! | GAAACAGGTGGACTTATTGA+TGG | + | chr5.3:6296377-6296396 | None:intergenic | 40.0% |
| ! | TCCAATAAGGTATCCCCATT+TGG | + | chr5.3:6295595-6295614 | None:intergenic | 40.0% |
| !! | CACTCACCCTTTTCAAGAAT+GGG | - | chr5.3:6294754-6294773 | MS.gene09725:CDS | 40.0% |
| !! | TCACTCACCCTTTTCAAGAA+TGG | - | chr5.3:6294753-6294772 | MS.gene09725:CDS | 40.0% |
| !!! | ATGGACAACCTTTTGAAGCA+CGG | - | chr5.3:6296032-6296051 | MS.gene09725:intron | 40.0% |
| !!! | GAGGGTACTTTTGGAAACTT+TGG | - | chr5.3:6295507-6295526 | MS.gene09725:intron | 40.0% |
| !!! | TGGATGGACCTTTTTTTGGT+AGG | + | chr5.3:6295191-6295210 | None:intergenic | 40.0% |
| AACCATACGGGCAAACATTG+TGG | - | chr5.3:6296592-6296611 | MS.gene09725:CDS | 45.0% | |
| ACAACTCTACCTGCAGAAAC+AGG | + | chr5.3:6296392-6296411 | None:intergenic | 45.0% | |
| ACCATACGGGCAAACATTGT+GGG | - | chr5.3:6296593-6296612 | MS.gene09725:CDS | 45.0% | |
| AGGTGCGTCCTACCAAAAAA+AGG | - | chr5.3:6295180-6295199 | MS.gene09725:CDS | 45.0% | |
| AGGTTGTCCATCTGAATAGG+AGG | + | chr5.3:6296023-6296042 | None:intergenic | 45.0% | |
| ATATCAGCTGTACAGGATGG+TGG | - | chr5.3:6294930-6294949 | MS.gene09725:intron | 45.0% | |
| ATCACCGATAGCTAAGTGGA+TGG | - | chr5.3:6295949-6295968 | MS.gene09725:intron | 45.0% | |
| ATGACTCCAAATCTTGGGCA+AGG | - | chr5.3:6296437-6296456 | MS.gene09725:CDS | 45.0% | |
| ATGTTTGCCCGTATGGTTAG+TGG | + | chr5.3:6296590-6296609 | None:intergenic | 45.0% | |
| CACCCAATGACTCCAAATCT+TGG | - | chr5.3:6296431-6296450 | MS.gene09725:CDS | 45.0% | |
| CACCGGATGACACTATAATC+AGG | - | chr5.3:6296324-6296343 | MS.gene09725:intron | 45.0% | |
| CACTATAATCAGGACTCCGT+TGG | - | chr5.3:6296334-6296353 | MS.gene09725:intron | 45.0% | |
| CACTCCACCCATTCTTGAAA+AGG | + | chr5.3:6294764-6294783 | None:intergenic | 45.0% | |
| CAGATTGTAATAGGGTGCGA+CGG | - | chr5.3:6295920-6295939 | MS.gene09725:intron | 45.0% | |
| CAGGGTCATAACCAATCATG+TGG | + | chr5.3:6295807-6295826 | None:intergenic | 45.0% | |
| CCTGAGAATTCAACACAAGC+AGG | + | chr5.3:6294676-6294695 | None:intergenic | 45.0% | |
| CCTGCTTGTGTTGAATTCTC+AGG | - | chr5.3:6294673-6294692 | MS.gene09725:CDS | 45.0% | |
| GAACATGTTGTAATCGTGGG+TGG | - | chr5.3:6294552-6294571 | MS.gene09725:CDS | 45.0% | |
| GAAGCAAGCTAAGGATCTAG+TGG | - | chr5.3:6296262-6296281 | MS.gene09725:intron | 45.0% | |
| GCACGGGTGAATTACATCTA+CGG | - | chr5.3:6296049-6296068 | MS.gene09725:intron | 45.0% | |
| GCTAGAGTTGAAACCTGTGA+AGG | + | chr5.3:6294608-6294627 | None:intergenic | 45.0% | |
| GGCTCAATCTTCAGTCCAAA+AGG | - | chr5.3:6294530-6294549 | MS.gene09725:CDS | 45.0% | |
| GGTGCTAAAGAAGCAAGCTA+AGG | - | chr5.3:6296253-6296272 | MS.gene09725:intron | 45.0% | |
| TATAATCAGGACTCCGTTGG+TGG | - | chr5.3:6296337-6296356 | MS.gene09725:CDS | 45.0% | |
| TCACCGATAGCTAAGTGGAT+GGG | - | chr5.3:6295950-6295969 | MS.gene09725:intron | 45.0% | |
| TCAGTGTCATGTACTCGTGT+TGG | + | chr5.3:6295118-6295137 | None:intergenic | 45.0% | |
| TGCTTCAACAGTTCATCTCC+AGG | - | chr5.3:6296130-6296149 | MS.gene09725:intron | 45.0% | |
| TTCCTAACAGAACACACCAG+CGG | + | chr5.3:6296641-6296660 | None:intergenic | 45.0% | |
| TTCGATCACCGATAGCTAAG+TGG | - | chr5.3:6295945-6295964 | MS.gene09725:intron | 45.0% | |
| ! | AAGGTATCCCCATTTGGACT+TGG | + | chr5.3:6295589-6295608 | None:intergenic | 45.0% |
| ! | ACTTCTGAGAGCTCCAATTC+TGG | + | chr5.3:6294496-6294515 | None:intergenic | 45.0% |
| ! | GCCCAAGATTTGGAGTCATT+GGG | + | chr5.3:6296436-6296455 | None:intergenic | 45.0% |
| ! | TGCCCAAGATTTGGAGTCAT+TGG | + | chr5.3:6296437-6296456 | None:intergenic | 45.0% |
| !! | AGTTTTGCCACTGGCCTATT+TGG | + | chr5.3:6295297-6295316 | None:intergenic | 45.0% |
| !! | ATAAGTCCACCTGTTTCTGC+AGG | - | chr5.3:6296380-6296399 | MS.gene09725:CDS | 45.0% |
| !! | GAATTCTCAGGCTTGGTGTT+CGG | - | chr5.3:6294685-6294704 | MS.gene09725:CDS | 45.0% |
| !! | TCACCCTTTTCAAGAATGGG+TGG | - | chr5.3:6294757-6294776 | MS.gene09725:CDS | 45.0% |
| !!! | ACCGATGGCTCGGTTATTTT+AGG | + | chr5.3:6296236-6296255 | None:intergenic | 45.0% |
| !!! | TGGACAACCTTTTGAAGCAC+GGG | - | chr5.3:6296033-6296052 | MS.gene09725:intron | 45.0% |
| ACCCACAATGTTTGCCCGTA+TGG | + | chr5.3:6296597-6296616 | None:intergenic | 50.0% | |
| ACGGATATTGTGCAGCCAAG+AGG | - | chr5.3:6295468-6295487 | MS.gene09725:intron | 50.0% | |
| ACGGGCAAACATTGTGGGTT+CGG | - | chr5.3:6296598-6296617 | MS.gene09725:CDS | 50.0% | |
| ACTCTACCTGCAGAAACAGG+TGG | + | chr5.3:6296389-6296408 | None:intergenic | 50.0% | |
| AGACGAGGTTGTTGTAGCCA+TGG | + | chr5.3:6294442-6294461 | None:intergenic | 50.0% | |
| CAAAGCCATCGATCCACCAA+CGG | + | chr5.3:6296353-6296372 | None:intergenic | 50.0% | |
| CAACTGCTCTATCCCTTCAC+AGG | - | chr5.3:6294592-6294611 | MS.gene09725:CDS | 50.0% | |
| CAGTCAGAGTCACTTCGAAC+AGG | - | chr5.3:6294723-6294742 | MS.gene09725:CDS | 50.0% | |
| CATGCTCCTTGCCCAAGATT+TGG | + | chr5.3:6296446-6296465 | None:intergenic | 50.0% | |
| CATGTTGTAATCGTGGGTGG+TGG | - | chr5.3:6294555-6294574 | MS.gene09725:CDS | 50.0% | |
| CTGAATAGGAGGCAAGTCCA+CGG | + | chr5.3:6296012-6296031 | None:intergenic | 50.0% | |
| CTTCCTACCAAATAGGCCAG+TGG | - | chr5.3:6295287-6295306 | MS.gene09725:intron | 50.0% | |
| GAAGGGATAGAGCAGTTGCA+AGG | + | chr5.3:6294590-6294609 | None:intergenic | 50.0% | |
| GCAGGTAGAGTTGTACTCGT+TGG | - | chr5.3:6296398-6296417 | MS.gene09725:CDS | 50.0% | |
| GGACTTGCCTCCTATTCAGA+TGG | - | chr5.3:6296013-6296032 | MS.gene09725:intron | 50.0% | |
| GTTGGTCATTGTGCTTTCCG+TGG | - | chr5.3:6295992-6296011 | MS.gene09725:intron | 50.0% | |
| TCAGAGTCACTTCGAACAGG+TGG | - | chr5.3:6294726-6294745 | MS.gene09725:CDS | 50.0% | |
| TCCTAACAGAACACACCAGC+GGG | + | chr5.3:6296640-6296659 | None:intergenic | 50.0% | |
| TGTGGGTTCGGCTTTGCAAT+GGG | - | chr5.3:6296610-6296629 | MS.gene09725:CDS | 50.0% | |
| TTGTGCTCTTGAGGATGCAG+TGG | - | chr5.3:6296466-6296485 | MS.gene09725:intron | 50.0% | |
| TTGTGGGTTCGGCTTTGCAA+TGG | - | chr5.3:6296609-6296628 | MS.gene09725:CDS | 50.0% | |
| ! | AGGAGCATGTTGTGCTCTTG+AGG | - | chr5.3:6296457-6296476 | MS.gene09725:CDS | 50.0% |
| ! | AGTAAGGCTTGGTCCATTGC+TGG | - | chr5.3:6296682-6296701 | MS.gene09725:CDS | 50.0% |
| ! | ATGGTGGTGAAGTCTGAGGA+TGG | - | chr5.3:6294946-6294965 | MS.gene09725:intron | 50.0% |
| ! | ATTTGGAGTCATTGGGTGCC+AGG | + | chr5.3:6296429-6296448 | None:intergenic | 50.0% |
| ! | GCTTGCTTCTTTAGCACCGA+TGG | + | chr5.3:6296251-6296270 | None:intergenic | 50.0% |
| ! | GGACCAAGCCTTACTAGCTT+AGG | + | chr5.3:6296677-6296696 | None:intergenic | 50.0% |
| ! | TTGCCACTGGCCTATTTGGT+AGG | + | chr5.3:6295293-6295312 | None:intergenic | 50.0% |
| !! | CTTCTTTAGCACCGATGGCT+CGG | + | chr5.3:6296246-6296265 | None:intergenic | 50.0% |
| !!! | AGTGGAGAGGAGGGTACTTT+TGG | - | chr5.3:6295498-6295517 | MS.gene09725:intron | 50.0% |
| ACCCGCTGGTGTGTTCTGTT+AGG | - | chr5.3:6296636-6296655 | MS.gene09725:CDS | 55.0% | |
| ATGCATGGACATCGGGGAGT+GGG | + | chr5.3:6295361-6295380 | None:intergenic | 55.0% | |
| TACGGAAAAGGGTTACGCGC+AGG | - | chr5.3:6296067-6296086 | MS.gene09725:intron | 55.0% | |
| TGGTGTTCGGTCTCTTGTGC+TGG | - | chr5.3:6294698-6294717 | MS.gene09725:CDS | 55.0% | |
| TTGTACTCGTTGGAGACGCC+TGG | - | chr5.3:6296408-6296427 | MS.gene09725:CDS | 55.0% | |
| TTTGCAATGGGACAACCCGC+TGG | - | chr5.3:6296622-6296641 | MS.gene09725:CDS | 55.0% | |
| ! | ATGGGTGCGAGTTTTGCCAC+TGG | + | chr5.3:6295306-6295325 | None:intergenic | 55.0% |
| ! | CAGGATGGTGGTGAAGTCTG+AGG | - | chr5.3:6294942-6294961 | MS.gene09725:intron | 55.0% |
| ! | CGTTGGTGGATCGATGGCTT+TGG | - | chr5.3:6296351-6296370 | MS.gene09725:CDS | 55.0% |
| GATGCATGGACATCGGGGAG+TGG | + | chr5.3:6295362-6295381 | None:intergenic | 60.0% | |
| TCTCCACTGCACGCACCTCT+TGG | + | chr5.3:6295486-6295505 | None:intergenic | 60.0% | |
| ! | AAGAGGTGCGTGCAGTGGAG+AGG | - | chr5.3:6295485-6295504 | MS.gene09725:intron | 60.0% |
| ! | ATCGTGGGTGGTGGCATTGC+AGG | - | chr5.3:6294564-6294583 | MS.gene09725:CDS | 60.0% |
| ! | GGACTCCGTTGGTGGATCGA+TGG | - | chr5.3:6296345-6296364 | MS.gene09725:CDS | 60.0% |
| AGGTGCGTGCAGTGGAGAGG+AGG | - | chr5.3:6295488-6295507 | MS.gene09725:intron | 65.0% | |
| GGTGCGTGCAGTGGAGAGGA+GGG | - | chr5.3:6295489-6295508 | MS.gene09725:intron | 65.0% | |
| ! | CAGCCAAGAGGTGCGTGCAG+TGG | - | chr5.3:6295480-6295499 | MS.gene09725:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6294435 | 6296742 | 6294435 | ID=MS.gene09725 |
| chr5.3 | mRNA | 6294435 | 6296742 | 6294435 | ID=MS.gene09725.t1;Parent=MS.gene09725 |
| chr5.3 | exon | 6296564 | 6296742 | 6296564 | ID=MS.gene09725.t1.exon1;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6296564 | 6296742 | 6296564 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| chr5.3 | exon | 6296336 | 6296482 | 6296336 | ID=MS.gene09725.t1.exon2;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6296336 | 6296482 | 6296336 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| chr5.3 | exon | 6296167 | 6296232 | 6296167 | ID=MS.gene09725.t1.exon3;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6296167 | 6296232 | 6296167 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| chr5.3 | exon | 6295532 | 6295694 | 6295532 | ID=MS.gene09725.t1.exon4;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6295532 | 6295694 | 6295532 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| chr5.3 | exon | 6295026 | 6295254 | 6295026 | ID=MS.gene09725.t1.exon5;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6295026 | 6295254 | 6295026 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| chr5.3 | exon | 6294435 | 6294946 | 6294435 | ID=MS.gene09725.t1.exon6;Parent=MS.gene09725.t1 |
| chr5.3 | CDS | 6294435 | 6294946 | 6294435 | ID=cds.MS.gene09725.t1;Parent=MS.gene09725.t1 |
| Gene Sequence |
| Protein sequence |
