AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39805


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39805.t1 MTR_4g024660 62.234 376 106 3 1 343 1 373 1.39e-166 469
MS.gene39805.t1 MTR_8g063070 60.372 376 113 3 1 343 1 373 5.31e-163 460
MS.gene39805.t1 MTR_4g119410 63.130 377 101 4 1 343 1 373 4.97e-161 455
MS.gene39805.t1 MTR_8g062600 60.372 376 113 3 1 343 1 373 5.30e-161 455
MS.gene39805.t1 MTR_7g056347 58.777 376 119 3 1 343 1 373 3.92e-158 447
MS.gene39805.t1 MTR_8g006930 60.372 376 113 3 1 343 1 373 4.60e-156 442
MS.gene39805.t1 MTR_8g469400 61.170 376 97 5 1 343 1 360 1.41e-155 441
MS.gene39805.t1 MTR_7g056393 59.574 376 116 3 1 343 1 373 1.85e-151 431
MS.gene39805.t1 MTR_7g078010 59.309 376 117 3 1 343 1 373 1.18e-149 426
MS.gene39805.t1 MTR_1g093120 58.667 375 110 8 8 343 2 370 1.30e-147 421
MS.gene39805.t1 MTR_1g093140 54.068 381 126 8 8 343 2 378 3.61e-140 402
MS.gene39805.t1 MTR_2g069010 53.562 379 136 6 1 343 1 375 3.19e-137 395
MS.gene39805.t1 MTR_1g093110 52.957 372 131 7 11 343 8 374 9.94e-136 391
MS.gene39805.t1 MTR_2g068950 53.994 363 127 6 17 343 11 369 2.03e-131 380
MS.gene39805.t1 MTR_2g069060 52.394 376 119 7 1 343 1 349 6.59e-130 375
MS.gene39805.t1 MTR_2g068960 53.168 363 130 6 17 343 11 369 1.58e-128 372
MS.gene39805.t1 MTR_2g069020 52.958 355 127 6 12 331 10 359 4.69e-126 366
MS.gene39805.t1 MTR_2g069020 52.958 355 127 6 12 331 10 359 1.96e-125 365
MS.gene39805.t1 MTR_8g041600 48.656 372 150 6 8 343 8 374 2.25e-125 365
MS.gene39805.t1 MTR_8g041620 48.387 372 151 6 8 343 8 374 1.19e-124 363
MS.gene39805.t1 MTR_8g009160 49.444 360 132 6 22 343 17 364 6.89e-124 360
MS.gene39805.t1 MTR_8g009080 49.337 377 151 5 1 343 27 397 3.63e-123 360
MS.gene39805.t1 MTR_8g028435 49.859 355 138 7 22 343 17 364 1.14e-120 352
MS.gene39805.t1 MTR_7g056353 50.975 359 114 4 16 342 18 346 4.02e-120 356
MS.gene39805.t1 MTR_8g009090 48.518 371 148 7 6 343 4 364 1.24e-119 350
MS.gene39805.t1 MTR_8g008930 48.925 372 146 8 6 343 4 365 5.70e-118 345
MS.gene39805.t1 MTR_8g009170 48.493 365 143 9 14 343 12 366 1.69e-116 342
MS.gene39805.t1 MTR_1g043760 47.075 359 148 6 18 342 5 355 4.05e-115 338
MS.gene39805.t1 MTR_2g069190 49.030 361 142 6 18 343 18 371 7.56e-115 338
MS.gene39805.t1 MTR_2g069210 49.198 374 136 8 11 343 7 367 1.12e-114 337
MS.gene39805.t1 MTR_8g009110 47.645 361 138 7 22 343 17 365 2.08e-114 336
MS.gene39805.t1 MTR_2g069090 47.757 379 155 7 1 343 1 372 5.73e-114 335
MS.gene39805.t1 MTR_1g043770 48.324 358 146 6 18 343 5 355 1.21e-112 332
MS.gene39805.t1 MTR_4g117880 48.810 336 131 6 22 323 17 345 2.35e-112 331
MS.gene39805.t1 MTR_7g078010 58.966 290 84 2 1 257 1 288 6.95e-112 327
MS.gene39805.t1 MTR_2g069300 46.739 368 141 9 18 343 4 358 1.77e-110 326
MS.gene39805.t1 MTR_1g043810 47.175 354 148 5 18 338 5 352 1.87e-110 326
MS.gene39805.t1 MTR_0032s0040 45.333 375 154 5 12 343 7 373 4.41e-109 323
MS.gene39805.t1 MTR_1g043775 46.610 354 150 5 18 338 5 352 1.79e-107 318
MS.gene39805.t1 MTR_7g029655 44.595 370 161 5 12 343 7 370 1.33e-103 309
MS.gene39805.t1 MTR_8g009150 43.213 361 134 8 22 343 17 345 2.08e-96 290
MS.gene39805.t1 MTR_8g041600 47.203 286 113 3 8 257 8 291 5.52e-95 285
MS.gene39805.t1 MTR_1g070185 42.623 366 165 5 12 343 13 367 6.94e-95 286
MS.gene39805.t1 MTR_8g009120 42.936 361 143 8 22 343 17 353 2.80e-93 282
MS.gene39805.t1 MTR_8g009080 47.931 290 115 3 1 256 27 314 4.45e-90 273
MS.gene39805.t1 MTR_8g009080 47.038 287 116 3 1 253 27 311 1.10e-87 267
MS.gene39805.t1 MTR_2g069060 53.012 249 80 3 44 257 2 248 5.14e-87 263
MS.gene39805.t1 MTR_1g043770 48.708 271 104 4 18 256 5 272 7.98e-87 264
MS.gene39805.t1 MTR_7g105070 40.659 364 174 6 15 343 6 362 6.68e-86 263
MS.gene39805.t1 MTR_8g009170 46.931 277 107 6 14 256 12 282 1.08e-84 258
MS.gene39805.t1 MTR_1g043810 47.059 272 109 3 18 256 5 274 2.29e-83 256
MS.gene39805.t1 MTR_1g043775 46.324 272 111 3 18 256 5 274 8.29e-81 249
MS.gene39805.t1 MTR_8g009180 52.564 234 81 4 126 338 65 289 2.88e-77 239
MS.gene39805.t1 MTR_1g032220 39.011 364 171 6 17 342 21 371 4.47e-74 233
MS.gene39805.t1 MTR_1g032250 38.244 353 173 4 17 334 21 363 1.19e-72 230
MS.gene39805.t1 MTR_1g032140 38.227 361 178 4 17 342 14 364 1.73e-72 229
MS.gene39805.t1 MTR_1g043840 52.273 176 82 2 150 324 50 224 5.47e-59 193
MS.gene39805.t1 MTR_7g068650 33.807 352 180 10 33 339 15 358 5.31e-51 173
MS.gene39805.t1 MTR_4g015790 32.687 361 181 11 33 339 14 366 9.04e-51 173
MS.gene39805.t1 MTR_6g015950 35.455 330 157 11 42 331 14 327 1.53e-49 169
MS.gene39805.t1 MTR_1g070085 32.915 319 160 6 64 342 34 338 5.24e-49 167
MS.gene39805.t1 MTR_1g070085 32.915 319 160 6 64 342 34 338 5.24e-49 167
MS.gene39805.t1 MTR_3g063180 31.755 359 181 12 33 343 10 352 1.18e-48 167
MS.gene39805.t1 MTR_5g032870 30.990 313 165 7 66 338 37 338 5.68e-48 165
MS.gene39805.t1 MTR_8g024120 31.847 314 167 5 66 343 41 343 1.46e-46 161
MS.gene39805.t1 MTR_2g072910 29.345 351 197 9 32 343 16 354 2.91e-46 161
MS.gene39805.t1 MTR_5g082750 32.676 355 181 12 33 342 14 355 5.40e-45 157
MS.gene39805.t1 MTR_3g092890 31.847 314 163 8 66 342 37 336 1.80e-44 155
MS.gene39805.t1 MTR_5g032880 31.250 320 167 8 66 343 375 683 1.91e-44 162
MS.gene39805.t1 MTR_5g032880 29.739 306 158 6 66 331 37 325 9.66e-41 151
MS.gene39805.t1 MTR_2g072890 30.189 318 175 6 63 343 48 355 2.19e-44 156
MS.gene39805.t1 MTR_0009s0050 31.579 323 171 9 59 343 38 348 3.57e-44 155
MS.gene39805.t1 MTR_7g056370 44.565 184 67 2 27 177 6 187 3.60e-44 151
MS.gene39805.t1 MTR_0009s0050 31.579 323 171 9 59 343 38 348 4.21e-44 155
MS.gene39805.t1 MTR_5g065010 30.816 331 181 8 32 324 3 323 4.88e-44 154
MS.gene39805.t1 MTR_4g087110 32.268 313 152 10 67 327 26 330 5.52e-44 155
MS.gene39805.t1 MTR_1g070080 32.188 320 162 7 64 343 35 339 6.56e-44 154
MS.gene39805.t1 MTR_5g048550 30.857 350 191 10 32 343 12 348 8.09e-44 154
MS.gene39805.t1 MTR_5g048570 29.855 345 191 9 32 339 12 342 1.43e-43 154
MS.gene39805.t1 MTR_4g087120 31.832 333 163 12 67 343 26 350 2.43e-43 153
MS.gene39805.t1 MTR_7g102820 30.878 353 176 11 28 324 21 361 3.21e-43 154
MS.gene39805.t1 MTR_5g055680 31.692 325 169 9 60 343 36 348 4.84e-43 152
MS.gene39805.t1 MTR_1g070135 30.031 323 163 7 64 342 35 338 5.86e-43 152
MS.gene39805.t1 MTR_1g062110 30.499 341 177 8 32 324 26 354 6.96e-43 152
MS.gene39805.t1 MTR_2g083000 31.307 329 168 9 49 338 11 320 7.86e-43 151
MS.gene39805.t1 MTR_3g091360 32.903 310 158 10 51 324 40 335 8.47e-43 152
MS.gene39805.t1 MTR_8g064200 29.412 340 192 10 32 334 17 345 1.16e-42 151
MS.gene39805.t1 MTR_8g064200 29.412 340 192 10 32 334 22 350 1.56e-42 151
MS.gene39805.t1 MTR_0328s0030 29.429 350 196 9 32 343 10 346 1.70e-42 151
MS.gene39805.t1 MTR_5g048470 28.940 349 201 10 32 343 17 355 2.27e-42 150
MS.gene39805.t1 MTR_5g055820 28.329 353 197 10 32 343 12 349 2.92e-42 150
MS.gene39805.t1 MTR_2g068840 28.161 348 197 7 32 338 21 356 5.80e-42 150
MS.gene39805.t1 MTR_3g083370 32.765 293 152 10 66 325 3 283 6.85e-42 148
MS.gene39805.t1 MTR_3g070860 31.661 319 169 9 64 342 47 356 7.44e-42 149
MS.gene39805.t1 MTR_3g091350 30.357 336 178 11 31 324 21 342 7.78e-42 149
MS.gene39805.t1 MTR_1g033810 29.940 334 186 10 41 336 20 343 1.08e-41 149
MS.gene39805.t1 MTR_5g055690 28.775 351 198 8 32 343 12 349 1.29e-41 149
MS.gene39805.t1 MTR_1g070085 37.004 227 127 4 122 342 44 260 2.36e-41 145
MS.gene39805.t1 MTR_1g034120 30.159 315 160 9 66 327 25 332 2.55e-41 147
MS.gene39805.t1 MTR_5g085330 32.432 296 153 10 65 324 3 287 3.48e-41 146
MS.gene39805.t1 MTR_4g093840 30.255 314 173 8 67 343 62 366 5.98e-41 147
MS.gene39805.t1 MTR_1g070120 30.671 313 168 6 66 341 37 337 6.27e-41 146
MS.gene39805.t1 MTR_1g034060 30.159 315 160 9 66 327 25 332 1.00e-40 146
MS.gene39805.t1 MTR_4g087140 31.902 326 155 13 61 327 14 331 1.53e-40 145
MS.gene39805.t1 MTR_7g016090 31.596 307 151 10 66 331 40 328 1.76e-40 145
MS.gene39805.t1 MTR_7g016090 31.596 307 151 10 66 331 38 326 1.99e-40 145
MS.gene39805.t1 MTR_2g102570 32.468 308 143 10 67 329 52 339 2.09e-40 145
MS.gene39805.t1 MTR_1g070100 37.004 227 127 4 122 342 40 256 1.10e-39 141
MS.gene39805.t1 MTR_0009s0480 30.000 350 192 11 33 343 12 347 1.23e-39 143
MS.gene39805.t1 MTR_4g087100 32.268 313 152 11 67 327 26 330 1.27e-39 143
MS.gene39805.t1 MTR_2g025120 31.058 293 157 11 66 324 3 284 1.48e-39 142
MS.gene39805.t1 MTR_5g048850 29.261 352 186 11 32 339 12 344 1.59e-39 143
MS.gene39805.t1 MTR_4g087090 30.699 329 169 13 66 343 29 349 1.82e-39 143
MS.gene39805.t1 MTR_5g055900 29.178 353 193 10 32 343 12 348 2.10e-39 142
MS.gene39805.t1 MTR_7g062570 27.606 355 195 11 33 343 20 356 3.16e-39 142
MS.gene39805.t1 MTR_1g034140 29.268 328 165 8 53 327 9 322 6.75e-39 141
MS.gene39805.t1 MTR_3g088565 33.077 260 128 10 65 286 1 252 1.09e-38 139
MS.gene39805.t1 MTR_5g048740 29.226 349 197 9 33 343 11 347 1.10e-38 140
MS.gene39805.t1 MTR_7g102720 29.664 327 180 7 53 343 23 335 1.30e-38 140
MS.gene39805.t1 MTR_7g062580 29.934 304 158 12 67 330 55 343 2.90e-38 140
MS.gene39805.t1 MTR_2g083030 29.210 291 155 5 67 323 37 310 5.64e-38 138
MS.gene39805.t1 MTR_3g058610 30.333 300 168 7 48 309 20 316 6.09e-38 139
MS.gene39805.t1 MTR_7g063730 29.245 318 170 11 66 343 63 365 1.01e-37 139
MS.gene39805.t1 MTR_2g437380 28.045 353 199 9 33 343 17 356 1.56e-37 138
MS.gene39805.t1 MTR_8g075830 29.900 301 168 7 48 309 20 316 1.13e-36 135
MS.gene39805.t1 MTR_5g055800 28.286 350 199 11 32 343 12 347 1.21e-36 135
MS.gene39805.t1 MTR_5g022020 30.820 305 160 9 48 309 20 316 1.43e-36 135
MS.gene39805.t1 MTR_0009s0050 34.529 223 134 5 126 343 35 250 1.70e-36 132
MS.gene39805.t1 MTR_0009s0050 34.529 223 134 5 126 343 35 250 2.13e-36 132
MS.gene39805.t1 MTR_8g075890 29.236 301 170 7 48 309 20 316 3.08e-36 134
MS.gene39805.t1 MTR_3g043900 29.178 353 193 9 32 343 17 353 3.58e-36 134
MS.gene39805.t1 MTR_5g005570 30.000 310 168 7 49 323 14 309 1.04e-35 132
MS.gene39805.t1 MTR_3g045230 27.809 356 195 10 32 343 17 354 1.23e-35 132
MS.gene39805.t1 MTR_3g117420 29.429 333 180 10 49 343 39 354 4.20e-35 131
MS.gene39805.t1 MTR_7g062600 29.260 311 164 10 67 336 51 346 7.49e-35 130
MS.gene39805.t1 MTR_2g068800 27.863 262 162 6 32 271 21 277 8.82e-35 129
MS.gene39805.t1 MTR_7g062550 29.781 319 165 11 67 343 60 361 8.84e-35 131
MS.gene39805.t1 MTR_1g062110 29.927 274 139 6 32 257 26 294 1.50e-34 129
MS.gene39805.t1 MTR_5g011250 27.473 364 195 11 33 342 8 356 2.35e-34 129
MS.gene39805.t1 MTR_7g451860 30.345 290 155 5 67 323 41 316 5.33e-34 128
MS.gene39805.t1 MTR_7g047670 30.345 290 155 5 67 323 41 316 5.33e-34 128
MS.gene39805.t1 MTR_3g026150 29.129 333 183 10 43 335 34 353 6.07e-34 128
MS.gene39805.t1 MTR_8g074070 28.829 333 182 11 49 343 39 354 3.13e-33 126
MS.gene39805.t1 MTR_1g070135 31.092 238 108 5 64 257 35 260 6.12e-33 124
MS.gene39805.t1 MTR_7g016080 28.834 326 162 13 55 338 30 327 1.17e-32 124
MS.gene39805.t1 MTR_4g074130 28.667 300 168 8 67 324 40 335 1.24e-32 124
MS.gene39805.t1 MTR_8g074050 28.829 333 182 10 49 343 39 354 1.78e-32 124
MS.gene39805.t1 MTR_0056s0160 31.390 223 141 4 126 343 18 233 1.98e-32 121
MS.gene39805.t1 MTR_3g072810 28.235 340 185 7 33 330 6 328 2.37e-32 123
MS.gene39805.t1 MTR_0009s0050 40.000 150 82 4 195 343 26 168 3.65e-32 119
MS.gene39805.t1 MTR_4g099380 40.476 168 54 4 19 149 124 282 4.46e-32 121
MS.gene39805.t1 MTR_7g081710 28.228 333 182 12 35 325 16 333 7.84e-32 122
MS.gene39805.t1 MTR_2g069070 39.674 184 54 4 1 149 1 162 9.95e-32 118
MS.gene39805.t1 MTR_3g083370 31.111 225 118 6 66 257 3 223 1.04e-31 119
MS.gene39805.t1 MTR_4g087130 31.464 321 159 12 67 333 26 339 1.16e-31 122
MS.gene39805.t1 MTR_7g045650 33.061 245 118 7 64 269 57 294 1.33e-31 121
MS.gene39805.t1 MTR_4g116010 29.206 315 169 11 67 343 50 348 4.12e-31 120
MS.gene39805.t1 MTR_1g048940 27.273 330 182 12 38 325 18 331 5.13e-31 120
MS.gene39805.t1 MTR_6g464620 27.864 323 173 7 48 318 36 350 6.54e-31 120
MS.gene39805.t1 MTR_7g062560 27.356 329 197 9 44 343 38 353 6.83e-31 120
MS.gene39805.t1 MTR_0009s0480 31.716 268 136 9 32 260 11 270 1.33e-30 117
MS.gene39805.t1 MTR_1g102070 27.744 328 186 6 57 341 49 368 1.83e-30 119
MS.gene39805.t1 MTR_1g032240 43.791 153 77 1 134 286 1 144 1.92e-30 114
MS.gene39805.t1 MTR_5g055690 28.996 269 146 6 32 261 12 274 6.87e-30 115
MS.gene39805.t1 MTR_7g084360 47.273 165 39 2 150 313 10 127 7.73e-30 111
MS.gene39805.t1 MTR_2g025120 30.667 225 119 8 66 257 3 223 1.34e-29 113
MS.gene39805.t1 MTR_5g059130 26.765 340 182 10 38 330 14 333 2.00e-29 115
MS.gene39805.t1 MTR_8g074070 29.618 314 185 12 49 343 39 335 2.05e-29 115
MS.gene39805.t1 MTR_1g081840 27.469 324 173 9 57 332 42 351 1.23e-28 114
MS.gene39805.t1 MTR_8g033380 28.788 330 183 8 28 315 17 336 1.50e-28 114
MS.gene39805.t1 MTR_2g072910 28.358 268 148 7 32 260 16 278 5.84e-28 110
MS.gene39805.t1 MTR_5g048850 29.851 268 138 9 32 258 12 270 6.33e-28 110
MS.gene39805.t1 MTR_3g072820 25.714 315 172 8 60 330 35 331 7.63e-28 111
MS.gene39805.t1 MTR_6g092620 29.183 257 142 8 65 286 1 252 1.04e-27 110
MS.gene39805.t1 MTR_3g026150 35.233 193 115 5 145 335 66 250 1.06e-27 109
MS.gene39805.t1 MTR_2g437380 31.140 228 136 5 126 343 46 262 1.38e-27 109
MS.gene39805.t1 MTR_3g117485 27.852 298 168 8 61 319 43 332 3.48e-27 110
MS.gene39805.t1 MTR_3g464530 28.620 297 150 10 67 320 34 311 6.46e-27 108
MS.gene39805.t1 MTR_3g040410 27.687 307 179 10 67 339 6 303 8.03e-27 108
MS.gene39805.t1 MTR_3g088745 27.778 306 166 8 65 325 34 329 1.06e-26 108
MS.gene39805.t1 MTR_5g059140 25.697 323 167 10 42 313 16 316 6.59e-26 106
MS.gene39805.t1 MTR_3g096500 25.305 328 192 7 59 341 56 375 1.48e-25 105
MS.gene39805.t1 MTR_4g099390 55.814 86 36 2 258 343 1 84 2.51e-25 97.8
MS.gene39805.t1 MTR_8g093930 25.507 345 198 10 28 325 6 338 2.98e-25 104
MS.gene39805.t1 MTR_3g026150 28.627 255 136 8 43 257 34 282 1.35e-24 101
MS.gene39805.t1 MTR_4g123020 27.759 299 157 11 67 323 20 301 2.15e-24 101
MS.gene39805.t1 MTR_3g117485 31.609 174 110 3 148 319 94 260 4.18e-24 100
MS.gene39805.t1 MTR_1g011580 26.557 305 157 9 67 329 63 342 4.51e-24 101
MS.gene39805.t1 MTR_0009s0400 33.333 150 92 4 195 343 2 144 4.54e-24 96.7
MS.gene39805.t1 MTR_8g093980 28.529 333 178 12 56 341 46 365 5.36e-24 101
MS.gene39805.t1 MTR_4g132770 43.750 96 52 2 197 291 32 126 7.97e-24 96.3
MS.gene39805.t1 MTR_1g044105 32.738 168 73 3 18 147 5 170 9.21e-24 96.7
MS.gene39805.t1 MTR_2g019370 27.010 311 148 11 67 323 28 313 2.72e-23 99.0
MS.gene39805.t1 MTR_5g025050 27.703 296 152 11 67 323 5 277 3.53e-23 98.2
MS.gene39805.t1 MTR_5g025090 26.875 320 166 11 66 343 4 297 3.88e-23 97.8
MS.gene39805.t1 MTR_5g027230 27.778 306 167 12 66 335 5 292 4.95e-23 97.8
MS.gene39805.t1 MTR_1g027290 26.687 326 182 10 63 343 25 338 2.77e-22 96.3
MS.gene39805.t1 MTR_1g086550 26.727 333 172 11 65 343 18 332 2.91e-22 96.3
MS.gene39805.t1 MTR_1g070110 31.140 228 111 6 121 342 46 233 5.36e-22 93.6
MS.gene39805.t1 MTR_5g024940 27.740 292 172 11 66 339 5 275 5.47e-22 94.4
MS.gene39805.t1 MTR_3g464530 28.205 234 110 7 67 257 34 252 7.40e-22 93.2
MS.gene39805.t1 MTR_5g025060 26.740 273 161 9 66 323 5 253 9.46e-22 93.6
MS.gene39805.t1 MTR_8g102600 27.844 334 161 15 56 332 8 318 1.90e-21 93.6
MS.gene39805.t1 MTR_4g115990 33.161 193 116 7 145 334 136 318 8.65e-21 91.7
MS.gene39805.t1 MTR_2g033270 27.044 318 174 14 65 342 17 316 8.88e-21 91.7
MS.gene39805.t1 MTR_6g088665 26.235 324 165 12 69 332 20 329 1.19e-20 91.7
MS.gene39805.t1 MTR_8g030880 28.618 304 164 13 66 327 4 296 1.25e-20 91.3
MS.gene39805.t1 MTR_6g088665 26.154 325 165 12 69 332 20 330 1.37e-20 91.7
MS.gene39805.t1 MTR_4g100600 31.100 209 127 7 139 339 116 315 6.47e-19 86.7
MS.gene39805.t1 MTR_8g102600 29.557 203 125 7 139 332 75 268 7.03e-19 85.5
MS.gene39805.t1 MTR_4g100590 23.824 319 176 11 59 329 1 300 1.24e-18 85.5
MS.gene39805.t1 MTR_2g070870 26.059 307 160 12 66 328 27 310 2.31e-18 85.1
MS.gene39805.t1 MTR_8g008960 52.632 76 32 2 268 343 31 102 5.12e-18 79.0
MS.gene39805.t1 MTR_7g077670 27.362 307 168 11 61 327 5 296 1.27e-17 82.8
MS.gene39805.t1 MTR_8g461330 25.614 285 152 10 94 328 44 318 1.66e-17 82.8
MS.gene39805.t1 MTR_4g100590 31.667 180 103 7 158 329 86 253 6.26e-17 80.1
MS.gene39805.t1 MTR_4g011720 26.404 178 122 4 148 324 124 293 1.56e-13 70.9
MS.gene39805.t1 MTR_3g040440 45.312 64 35 0 207 270 15 78 1.90e-13 69.7
MS.gene39805.t1 MTR_4g096840 21.818 330 188 11 47 329 13 319 4.62e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39805.t1 AT5G59530 49.051 369 142 6 13 343 4 364 1.60e-124 362
MS.gene39805.t1 AT5G59540 48.098 368 148 5 13 343 5 366 4.57e-124 361
MS.gene39805.t1 AT1G04350 47.934 363 145 5 17 343 6 360 2.92e-120 351
MS.gene39805.t1 AT1G06620 47.934 363 149 5 15 343 9 365 1.06e-117 345
MS.gene39805.t1 AT2G30840 47.397 365 153 3 14 343 2 362 2.89e-112 331
MS.gene39805.t1 AT1G06650 45.528 369 156 5 14 343 7 369 8.13e-112 330
MS.gene39805.t1 AT5G43450 46.409 362 150 5 13 338 4 357 7.26e-111 327
MS.gene39805.t1 AT1G06640 46.049 367 153 5 16 343 9 369 8.21e-110 325
MS.gene39805.t1 AT2G30840 46.301 365 151 4 14 343 2 356 1.32e-106 316
MS.gene39805.t1 AT5G43440 45.455 363 153 7 19 343 10 365 1.45e-105 314
MS.gene39805.t1 AT1G03410 44.110 365 161 6 16 343 3 361 1.66e-104 311
MS.gene39805.t1 AT1G03410 44.110 365 161 6 16 343 40 398 3.30e-104 311
MS.gene39805.t1 AT2G30830 44.904 363 157 6 16 343 4 358 1.34e-103 308
MS.gene39805.t1 AT1G04380 46.884 337 132 6 42 343 21 345 1.35e-103 308
MS.gene39805.t1 AT2G25450 42.936 361 168 4 16 343 4 359 3.00e-103 308
MS.gene39805.t1 AT1G03400 44.628 363 152 6 16 343 3 351 1.85e-102 305
MS.gene39805.t1 AT1G06645 42.408 382 171 7 2 343 7 379 9.57e-101 302
MS.gene39805.t1 AT1G03400 41.432 391 152 7 16 343 3 379 5.23e-96 290
MS.gene39805.t1 AT3G61400 42.407 349 151 7 18 323 10 351 3.42e-95 288
MS.gene39805.t1 AT5G59540 45.035 282 116 3 13 257 5 284 7.29e-89 268
MS.gene39805.t1 AT1G06620 47.101 276 110 3 15 256 9 282 3.45e-88 266
MS.gene39805.t1 AT5G43450 45.296 287 117 3 13 263 4 286 3.60e-85 259
MS.gene39805.t1 AT1G06650 44.523 283 115 4 14 257 7 286 4.21e-83 254
MS.gene39805.t1 AT2G30840 46.403 278 114 2 14 256 2 279 6.56e-83 254
MS.gene39805.t1 AT1G06640 43.289 298 120 5 16 267 9 303 3.64e-82 253
MS.gene39805.t1 AT1G06640 44.840 281 113 4 16 257 9 286 3.11e-81 249
MS.gene39805.t1 AT5G43440 44.928 276 111 5 19 256 10 282 7.47e-79 243
MS.gene39805.t1 AT3G61400 40.989 283 120 6 18 257 10 288 2.03e-71 224
MS.gene39805.t1 AT1G04380 45.020 251 95 4 42 257 21 263 4.58e-71 222
MS.gene39805.t1 AT4G10500 33.125 320 166 6 60 342 37 345 3.20e-52 176
MS.gene39805.t1 AT4G10490 32.087 321 169 6 60 342 35 344 2.14e-51 174
MS.gene39805.t1 AT3G13610 32.000 375 188 12 15 343 8 361 1.51e-50 172
MS.gene39805.t1 AT1G55290 33.144 353 171 10 32 339 25 357 8.32e-50 170
MS.gene39805.t1 AT5G24530 32.948 346 180 10 36 341 5 338 8.66e-49 167
MS.gene39805.t1 AT3G12900 29.155 343 197 6 32 339 21 352 4.36e-46 160
MS.gene39805.t1 AT1G78550 31.884 345 185 11 38 343 23 356 1.30e-45 159
MS.gene39805.t1 AT3G19000 31.287 342 169 10 58 342 19 351 1.38e-45 159
MS.gene39805.t1 AT4G16330 32.063 315 153 10 66 339 66 360 3.91e-45 158
MS.gene39805.t1 AT3G11180 31.662 379 194 12 7 339 35 394 8.34e-45 158
MS.gene39805.t1 AT4G25310 30.769 338 189 9 41 343 26 353 1.73e-44 156
MS.gene39805.t1 AT3G11180 31.956 363 182 12 7 323 35 378 3.35e-44 157
MS.gene39805.t1 AT2G36690 31.065 338 179 9 30 324 18 344 1.04e-43 154
MS.gene39805.t1 AT2G36690 31.065 338 179 9 30 324 18 344 1.04e-43 154
MS.gene39805.t1 AT5G05600 30.110 362 203 11 19 339 13 365 1.07e-42 152
MS.gene39805.t1 AT2G38240 30.055 366 195 12 23 343 2 351 5.78e-42 149
MS.gene39805.t1 AT1G17010 28.571 343 195 9 41 343 26 358 6.39e-42 149
MS.gene39805.t1 AT4G25300 30.636 346 189 10 38 343 22 356 6.57e-42 149
MS.gene39805.t1 AT1G17020 29.769 346 193 9 38 343 23 358 1.94e-41 148
MS.gene39805.t1 AT1G62380 31.250 256 138 7 64 286 4 254 3.87e-39 141
MS.gene39805.t1 AT1G12010 31.250 256 138 7 64 286 4 254 2.35e-38 139
MS.gene39805.t1 AT3G51240 30.990 313 167 7 39 309 10 315 2.52e-38 140
MS.gene39805.t1 AT1G05010 32.432 259 138 6 66 291 3 257 4.23e-38 139
MS.gene39805.t1 AT3G21420 30.473 338 176 12 33 323 17 342 1.01e-37 139
MS.gene39805.t1 AT1G77330 29.703 303 155 11 65 325 1 287 3.39e-37 135
MS.gene39805.t1 AT4G16330 33.945 218 129 5 126 339 48 254 1.42e-36 133
MS.gene39805.t1 AT3G19010 29.464 336 162 11 67 343 28 347 2.12e-36 134
MS.gene39805.t1 AT3G19010 29.464 336 162 11 67 343 28 347 2.12e-36 134
MS.gene39805.t1 AT4G21200 30.241 291 154 7 65 323 40 313 2.97e-36 134
MS.gene39805.t1 AT3G19000 30.040 253 122 7 58 257 19 269 4.93e-35 129
MS.gene39805.t1 AT1G78550 33.632 223 136 5 126 343 63 278 1.15e-34 128
MS.gene39805.t1 AT3G55970 29.674 337 182 13 33 323 14 341 1.45e-34 130
MS.gene39805.t1 AT4G22880 26.822 343 197 9 33 328 7 342 2.15e-34 129
MS.gene39805.t1 AT4G22880 26.822 343 197 9 33 328 7 342 2.15e-34 129
MS.gene39805.t1 AT4G22880 26.822 343 197 9 33 328 7 342 2.15e-34 129
MS.gene39805.t1 AT2G44800 28.652 356 184 12 19 325 2 336 3.14e-34 129
MS.gene39805.t1 AT1G15550 31.935 310 147 13 66 332 56 344 8.10e-34 128
MS.gene39805.t1 AT1G50960 29.605 304 168 8 54 325 27 316 2.28e-33 126
MS.gene39805.t1 AT4G25420 27.848 316 174 6 60 332 54 358 1.51e-31 122
MS.gene39805.t1 AT3G19010 31.629 313 155 15 67 343 28 317 1.80e-31 120
MS.gene39805.t1 AT5G05600 29.032 279 157 8 19 257 13 290 8.65e-31 118
MS.gene39805.t1 AT5G08640 26.557 305 170 8 66 330 42 332 1.09e-30 119
MS.gene39805.t1 AT5G08640 26.557 305 170 8 66 330 42 332 1.09e-30 119
MS.gene39805.t1 AT3G60290 29.032 310 158 9 60 325 45 336 1.44e-30 119
MS.gene39805.t1 AT4G25300 35.354 198 119 5 148 343 72 262 5.04e-30 115
MS.gene39805.t1 AT5G63590 29.032 310 146 10 63 319 10 298 1.08e-29 115
MS.gene39805.t1 AT3G51240 37.931 174 101 3 138 309 63 231 1.18e-29 115
MS.gene39805.t1 AT4G25310 27.083 336 174 9 42 343 27 325 1.56e-29 115
MS.gene39805.t1 AT1G80330 28.981 314 151 10 66 329 48 339 1.37e-28 114
MS.gene39805.t1 AT2G19590 30.112 269 143 10 59 291 3 262 1.67e-28 112
MS.gene39805.t1 AT5G20400 27.796 313 177 9 65 339 43 344 2.72e-28 113
MS.gene39805.t1 AT1G80340 27.508 309 166 8 60 327 43 334 3.08e-28 112
MS.gene39805.t1 AT1G60980 26.829 328 173 8 65 341 55 366 8.88e-28 112
MS.gene39805.t1 AT3G47190 28.383 303 148 10 54 304 18 303 5.27e-27 109
MS.gene39805.t1 AT3G55970 30.000 270 143 10 33 257 14 282 7.46e-27 108
MS.gene39805.t1 AT5G12270 27.493 371 204 15 20 343 7 359 2.00e-26 108
MS.gene39805.t1 AT5G07480 26.861 309 159 10 67 325 44 335 2.63e-26 107
MS.gene39805.t1 AT5G63600 24.675 308 170 9 63 329 29 315 2.98e-26 107
MS.gene39805.t1 AT5G51810 27.331 311 168 8 65 332 61 356 7.75e-26 106
MS.gene39805.t1 AT4G25420 29.150 247 129 4 60 263 54 297 9.66e-26 105
MS.gene39805.t1 AT5G07200 26.829 287 158 6 65 307 56 334 1.30e-25 106
MS.gene39805.t1 AT5G63600 24.595 309 170 10 63 329 29 316 5.03e-25 103
MS.gene39805.t1 AT1G44090 28.990 307 157 10 64 322 60 353 9.52e-25 103
MS.gene39805.t1 AT3G19010 27.843 255 120 7 67 266 28 273 1.73e-24 101
MS.gene39805.t1 AT5G20550 27.184 309 170 11 54 319 31 327 1.85e-24 102
MS.gene39805.t1 AT1G30040 26.524 328 160 13 66 343 30 326 3.63e-24 101
MS.gene39805.t1 AT1G49390 26.518 313 181 10 65 339 43 344 6.26e-24 100
MS.gene39805.t1 AT1G78440 27.687 307 160 13 67 328 18 307 9.63e-24 100
MS.gene39805.t1 AT4G21690 29.268 287 140 13 89 324 59 333 3.61e-23 99.0
MS.gene39805.t1 AT5G54000 26.263 297 170 9 65 322 44 330 3.79e-23 99.0
MS.gene39805.t1 AT5G63595 26.446 242 123 6 63 271 21 240 8.11e-23 96.7
MS.gene39805.t1 AT5G51810 29.707 239 119 5 65 260 61 293 9.56e-23 96.7
MS.gene39805.t1 AT5G07480 30.526 190 117 6 143 325 45 226 9.73e-21 90.1
MS.gene39805.t1 AT1G49390 28.182 220 143 7 126 339 55 265 1.30e-20 90.5
MS.gene39805.t1 AT5G58660 35.065 154 88 4 146 291 159 308 2.51e-20 90.9
MS.gene39805.t1 AT5G54000 30.220 182 118 5 143 322 76 250 3.01e-20 89.4
MS.gene39805.t1 AT4G23340 28.387 310 157 12 63 327 6 295 3.04e-20 90.5
MS.gene39805.t1 AT2G19590 30.396 227 117 9 101 291 26 247 3.59e-20 89.7
MS.gene39805.t1 AT2G34555 26.115 314 154 12 67 329 27 313 9.42e-20 89.0
MS.gene39805.t1 AT1G47990 27.483 302 157 13 67 323 15 299 8.42e-18 83.2
MS.gene39805.t1 AT4G16765 29.064 203 127 6 136 329 47 241 4.85e-17 80.1
MS.gene39805.t1 AT4G16765 29.064 203 127 6 136 329 47 241 4.85e-17 80.1
MS.gene39805.t1 AT4G16765 29.064 203 127 6 136 329 47 241 4.85e-17 80.1
MS.gene39805.t1 AT3G46490 25.369 339 176 10 54 332 3 324 6.09e-17 80.9
MS.gene39805.t1 AT3G46500 26.220 328 174 12 54 329 3 314 6.64e-17 80.9
MS.gene39805.t1 AT5G63580 25.316 237 118 6 66 257 18 240 1.06e-16 79.0
MS.gene39805.t1 AT5G63580 25.751 233 114 6 66 253 18 236 1.18e-16 79.0
MS.gene39805.t1 AT4G23340 32.967 182 107 7 154 327 3 177 1.52e-16 77.8
MS.gene39805.t1 AT1G35190 26.888 331 146 15 61 332 3 296 1.66e-16 79.3
MS.gene39805.t1 AT1G02400 26.019 319 180 14 66 342 23 327 2.17e-16 79.3
MS.gene39805.t1 AT1G35190 26.627 338 161 14 61 332 3 319 9.16e-16 77.4
MS.gene39805.t1 AT5G43935 23.052 308 156 11 67 330 19 289 9.51e-16 77.0
MS.gene39805.t1 AT2G06960 37.313 134 63 5 197 330 33 145 4.80e-15 72.0
MS.gene39805.t1 AT3G46500 29.348 184 114 5 154 329 3 178 5.06e-15 73.2
MS.gene39805.t1 AT4G16765 34.109 129 72 4 206 329 75 195 8.29e-15 72.8
MS.gene39805.t1 AT3G46500 28.643 199 125 6 139 329 51 240 8.30e-15 73.6
MS.gene39805.t1 AT3G46500 28.643 199 125 6 139 329 51 240 8.30e-15 73.6
MS.gene39805.t1 AT4G16765 29.630 189 116 6 136 315 47 227 1.16e-14 72.8
MS.gene39805.t1 AT5G58660 34.167 120 67 4 146 257 159 274 8.58e-14 71.2
MS.gene39805.t1 AT3G46480 32.061 131 76 3 207 332 155 277 2.11e-13 70.1
MS.gene39805.t1 AT1G52820 27.041 196 133 5 148 341 127 314 6.79e-12 65.9

Find 60 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATTAGCTTCCTCTAAT+TGG 0.221971 5.4:+69212440 None:intergenic
TCTGATATCAGTTCCTTAAT+AGG 0.226391 5.4:+69209617 None:intergenic
AAGAATTGCCTCAAGTATTT+AGG 0.231549 5.4:-69211937 MS.gene39805:intron
TGAGGCAATTCTTCTGGTTT+TGG 0.234939 5.4:+69211947 None:intergenic
AAAGATTTATGGTCCTATTA+AGG 0.266713 5.4:-69209630 MS.gene39805:CDS
GTCTTGGATGAGATGATTAA+TGG 0.307431 5.4:-69212127 MS.gene39805:CDS
GAACTTGAAGACCACCAATT+TGG 0.309658 5.4:+69210415 None:intergenic
GAAGTTTCATCAAAGATTTA+TGG 0.309751 5.4:-69209641 MS.gene39805:CDS
AATACTTGAGGCAATTCTTC+TGG 0.322461 5.4:+69211941 None:intergenic
AAGAAAATCCACCAGTCTAT+AGG 0.322522 5.4:-69209595 MS.gene39805:CDS
GCTATTTGGAGAGACTCTTT+TGG 0.335560 5.4:-69211992 MS.gene39805:CDS
ATCTCATCCAAGACATTAAT+AGG 0.339754 5.4:+69212136 None:intergenic
GTCTTACCACCAAGTCATAA+AGG 0.362779 5.4:-69209713 MS.gene39805:CDS
GCTTCCTCTAATTGGTTTGT+TGG 0.363296 5.4:+69212448 None:intergenic
TCCTGAGCCAGAGTTAACTA+TGG 0.376552 5.4:-69210487 MS.gene39805:CDS
AGAAAATCCACCAGTCTATA+GGG 0.381819 5.4:-69209594 MS.gene39805:CDS
TGGAATTCCTATTAATGTCT+TGG 0.396054 5.4:-69212143 MS.gene39805:CDS
AAGTTCTTCATGAGAATCAA+TGG 0.405916 5.4:-69210398 MS.gene39805:CDS
TCGATCCAACTTGAGTATTC+CGG 0.418237 5.4:-69212278 MS.gene39805:CDS
TTCTTCCAGGTGATTAATCA+TGG 0.428736 5.4:-69212163 MS.gene39805:CDS
TCATAAAGGGCCAAGAGTTT+CGG 0.431574 5.4:-69209699 MS.gene39805:CDS
GAGTTATTGTCAGAGGCTCT+TGG 0.433628 5.4:-69210585 MS.gene39805:CDS
ATCTTTGATGAAACTTCAGT+TGG 0.445378 5.4:+69209647 None:intergenic
TTTCGTCAGTGTTTATCATC+GGG 0.458703 5.4:-69209735 MS.gene39805:CDS
GAAACCAACAAACCAATTAG+AGG 0.462049 5.4:-69212452 MS.gene39805:CDS
CTTGGCCCTTTATGACTTGG+TGG 0.468924 5.4:+69209707 None:intergenic
ACTCTTGGCCCTTTATGACT+TGG 0.474314 5.4:+69209704 None:intergenic
GAATCGAAAGCTGGTGTAAG+AGG 0.475343 5.4:-69212379 MS.gene39805:CDS
TCTTACCACCAAGTCATAAA+GGG 0.480891 5.4:-69209712 MS.gene39805:CDS
CATAAAAGTTGCAGAATACA+TGG 0.494667 5.4:-69209570 MS.gene39805:CDS
ATTTCGTCAGTGTTTATCAT+CGG 0.496785 5.4:-69209736 MS.gene39805:CDS
GCATGATGGAAGCTCTAAGT+TGG 0.506991 5.4:-69209528 MS.gene39805:CDS
TGTTTATTTCACAACTTGAA+AGG 0.507400 5.4:+69209503 None:intergenic
GTTAATGTTCCTCCTCTACA+TGG 0.507555 5.4:-69210375 MS.gene39805:CDS
AGTTCTTCATGAGAATCAAT+GGG 0.512480 5.4:-69210397 MS.gene39805:CDS
CAATCATGCTATGCGTATTG+AGG 0.519638 5.4:-69212224 MS.gene39805:CDS
GCTATGCGTATTGAGGTAAT+CGG 0.522096 5.4:-69212217 MS.gene39805:CDS
TCTGTACCCATAGTTAACTC+TGG 0.527597 5.4:+69210480 None:intergenic
AAACTAGCTACCGAAACTCT+TGG 0.532612 5.4:+69209689 None:intergenic
ACCTTTGATGAATCGAAAGC+TGG 0.535722 5.4:-69212388 MS.gene39805:CDS
GAATTCCATGATTAATCACC+TGG 0.536258 5.4:+69212158 None:intergenic
CCCATAGTTAACTCTGGCTC+AGG 0.542593 5.4:+69210486 None:intergenic
TTTATGTCCCTATAGACTGG+TGG 0.549958 5.4:+69209587 None:intergenic
TATGACCGGAATACTCAAGT+TGG 0.552151 5.4:+69212273 None:intergenic
ACCAGCTTTCGATTCATCAA+AGG 0.554563 5.4:+69212387 None:intergenic
GTTAACTCTGGCTCAGGACA+TGG 0.555920 5.4:+69210492 None:intergenic
AAAGAATTGAGTTGTGCTGA+AGG 0.563547 5.4:-69210543 MS.gene39805:CDS
GTAAGAGGTCTTATAGAGTC+CGG 0.564520 5.4:-69212364 MS.gene39805:CDS
GGAGCTCTTGTTGTCAACAT+AGG 0.574451 5.4:-69210354 MS.gene39805:CDS
GCGTGGAATCTTTGTTACAC+CGG 0.579338 5.4:+69212345 None:intergenic
TCCAAGAAAATAATGTCACT+CGG 0.595147 5.4:-69210621 MS.gene39805:CDS
CCTGAGCCAGAGTTAACTAT+GGG 0.605516 5.4:-69210486 MS.gene39805:CDS
AAATAATACCTAAATACTTG+AGG 0.619921 5.4:+69211929 None:intergenic
ACAACAAGAGCTCCATGTAG+AGG 0.625496 5.4:+69210363 None:intergenic
CAGTGTTGTTCAATGTGTCA+CGG 0.634706 5.4:+69212314 None:intergenic
AACTCTGGCTCAGGACATGG+TGG 0.638860 5.4:+69210495 None:intergenic
ATGTCTTTGAGATCTATGAC+CGG 0.638913 5.4:+69212259 None:intergenic
GTGTCACGGTAGAACATGCG+TGG 0.641455 5.4:+69212328 None:intergenic
AAAATGCATGCAAAGATTGG+GGG 0.645357 5.4:-69212186 MS.gene39805:CDS
ACAAGAGCTCCATGTAGAGG+AGG 0.657858 5.4:+69210366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATAATATTAAAATTTA+AGG + chr5.4:69211155-69211174 None:intergenic 0.0%
!! ATAATTAAATGATATTTGAT+TGG - chr5.4:69210487-69210506 MS.gene39805:CDS 10.0%
!! ATTATTTATTATTCCAATAT+TGG - chr5.4:69209937-69209956 MS.gene39805:intron 10.0%
!!! CATATTTTAAACTTTTATTT+TGG - chr5.4:69211266-69211285 MS.gene39805:intron 10.0%
!!! TACATTTTCATTATAAAATA+TGG + chr5.4:69210853-69210872 None:intergenic 10.0%
!!! TAGACAATTTTTTTTTTTTT+TGG - chr5.4:69211674-69211693 MS.gene39805:intron 10.0%
!!! TATTTTAAACTTTTATTTTG+GGG - chr5.4:69211268-69211287 MS.gene39805:intron 10.0%
!!! TTATTTGTTTTCTTTTTAAT+CGG - chr5.4:69210641-69210660 MS.gene39805:CDS 10.0%
!!! TTTTTTTTAAAATAGTTTAG+TGG - chr5.4:69210095-69210114 MS.gene39805:intron 10.0%
!! AAAAAAAAAAAAAGAACCTA+CGG + chr5.4:69210775-69210794 None:intergenic 15.0%
!! TCAAGAATTTAAAAATTCAA+TGG - chr5.4:69210361-69210380 MS.gene39805:CDS 15.0%
!! TGTTAATATAATGGTTTAAA+GGG - chr5.4:69210919-69210938 MS.gene39805:intron 15.0%
!! TTGTTAATATAATGGTTTAA+AGG - chr5.4:69210918-69210937 MS.gene39805:intron 15.0%
!! TTTGAAAATTAAAAAATTGC+GGG - chr5.4:69210167-69210186 MS.gene39805:intron 15.0%
!!! AAACCTTTAGTTTATATAAT+TGG + chr5.4:69211246-69211265 None:intergenic 15.0%
!!! ATATGAACATTTTCATTTTA+TGG - chr5.4:69210824-69210843 MS.gene39805:intron 15.0%
!!! CAAATATTTATATTTTGGTT+GGG + chr5.4:69212134-69212153 None:intergenic 15.0%
!!! CTTTGAAAATTAAAAAATTG+CGG - chr5.4:69210166-69210185 MS.gene39805:intron 15.0%
!!! GATTTAAGAGAAATAATTTT+TGG - chr5.4:69211896-69211915 MS.gene39805:intron 15.0%
!!! TTTTACAAGTAAGTATTTAA+TGG - chr5.4:69211645-69211664 MS.gene39805:intron 15.0%
!!! TTTTTAAATTCTTGAATCAA+TGG + chr5.4:69210356-69210375 None:intergenic 15.0%
!! AAAAAAAAATATGAGACAGA+TGG - chr5.4:69212007-69212026 MS.gene39805:intron 20.0%
!! AAATAATACCTAAATACTTG+AGG + chr5.4:69210045-69210064 None:intergenic 20.0%
!! AATTTAAAAATTCAATGGCT+TGG - chr5.4:69210366-69210385 MS.gene39805:CDS 20.0%
!! CCAACCAAAATATAAATATT+TGG - chr5.4:69212132-69212151 MS.gene39805:CDS 20.0%
!! TAATTTACAATTCACAAACT+TGG - chr5.4:69211070-69211089 MS.gene39805:intron 20.0%
!! TTTAAAGAAAAGTTCATCAT+AGG - chr5.4:69210793-69210812 MS.gene39805:intron 20.0%
!!! ATTTTCACGGTTTAAATTTA+AGG - chr5.4:69210983-69211002 MS.gene39805:intron 20.0%
!!! CCAAATATTTATATTTTGGT+TGG + chr5.4:69212135-69212154 None:intergenic 20.0%
!!! GTGACCAAATATTTATATTT+TGG + chr5.4:69212139-69212158 None:intergenic 20.0%
!!! TAATTTTCTTTGTCAAATCA+CGG + chr5.4:69209921-69209940 None:intergenic 20.0%
!!! TGTAATTTGCTAAAAAAATC+TGG - chr5.4:69211100-69211119 MS.gene39805:intron 20.0%
! AAAGATTTATGGTCCTATTA+AGG - chr5.4:69212341-69212360 MS.gene39805:CDS 25.0%
! ATGTAGAAAAATCTGCTATT+TGG - chr5.4:69209965-69209984 MS.gene39805:intron 25.0%
! CCTCCAATTATATAAACTAA+AGG - chr5.4:69211240-69211259 MS.gene39805:intron 25.0%
! GAAGTTTCATCAAAGATTTA+TGG - chr5.4:69212330-69212349 MS.gene39805:CDS 25.0%
! TAAAAATGCATGCAAAGATT+GGG - chr5.4:69209783-69209802 MS.gene39805:intron 25.0%
! TAAAATGAGCATTTGTGTAT+GGG + chr5.4:69210333-69210352 None:intergenic 25.0%
! TATAAAACTGAAAGAAAACG+AGG - chr5.4:69211737-69211756 MS.gene39805:intron 25.0%
! TTAAAAATGCATGCAAAGAT+TGG - chr5.4:69209782-69209801 MS.gene39805:intron 25.0%
! TTAGTTTATATAATTGGAGG+TGG + chr5.4:69211240-69211259 None:intergenic 25.0%
! TTCTACATACAAACCAATAT+TGG + chr5.4:69209953-69209972 None:intergenic 25.0%
!! ATACTTTTACAAGACCAAAT+TGG - chr5.4:69211542-69211561 MS.gene39805:intron 25.0%
!! CCTTTAGTTTATATAATTGG+AGG + chr5.4:69211243-69211262 None:intergenic 25.0%
!! TTCAACTTTTCTATCATAAC+TGG + chr5.4:69209557-69209576 None:intergenic 25.0%
!!! ACTGTCATTTATGATTTTCA+CGG - chr5.4:69210970-69210989 MS.gene39805:intron 25.0%
!!! ATGAGTTTTATTAGTAGTAC+TGG - chr5.4:69210248-69210267 MS.gene39805:intron 25.0%
!!! GTTGATTTTTTGACATTAGT+TGG + chr5.4:69210727-69210746 None:intergenic 25.0%
AAAAATGCATGCAAAGATTG+GGG - chr5.4:69209784-69209803 MS.gene39805:intron 30.0%
AAGAATTGCCTCAAGTATTT+AGG - chr5.4:69210034-69210053 MS.gene39805:intron 30.0%
AAGTTCTTCATGAGAATCAA+TGG - chr5.4:69211573-69211592 MS.gene39805:intron 30.0%
ACCTTAAAAGTCACCATAAT+TGG + chr5.4:69210287-69210306 None:intergenic 30.0%
AGATGATTAATGGAATTCGT+AGG - chr5.4:69209854-69209873 MS.gene39805:intron 30.0%
AGTTCTTCATGAGAATCAAT+GGG - chr5.4:69211574-69211593 MS.gene39805:intron 30.0%
ATCTCATCCAAGACATTAAT+AGG + chr5.4:69209838-69209857 None:intergenic 30.0%
ATCTTTGATGAAACTTCAGT+TGG + chr5.4:69212327-69212346 None:intergenic 30.0%
ATTTCGTCAGTGTTTATCAT+CGG - chr5.4:69212235-69212254 MS.gene39805:CDS 30.0%
CATAAAAGTTGCAGAATACA+TGG - chr5.4:69212401-69212420 MS.gene39805:CDS 30.0%
GTAAAATGAGCATTTGTGTA+TGG + chr5.4:69210334-69210353 None:intergenic 30.0%
TCACTTGTACATTCCAATTA+TGG - chr5.4:69210271-69210290 MS.gene39805:intron 30.0%
TCCAAGAAAATAATGTCACT+CGG - chr5.4:69211350-69211369 MS.gene39805:intron 30.0%
TCTGATATCAGTTCCTTAAT+AGG + chr5.4:69212357-69212376 None:intergenic 30.0%
TGGAATTCCTATTAATGTCT+TGG - chr5.4:69209828-69209847 MS.gene39805:intron 30.0%
TTGATATCTTAAGAGCTCTA+GGG + chr5.4:69210206-69210225 None:intergenic 30.0%
TTTGATATCTTAAGAGCTCT+AGG + chr5.4:69210207-69210226 None:intergenic 30.0%
! AAATTCAATGGCTTGGATTT+AGG - chr5.4:69210373-69210392 MS.gene39805:CDS 30.0%
! AATCATTAGCTTCCTCTAAT+TGG + chr5.4:69209534-69209553 None:intergenic 30.0%
! TCCAATTATGGTGACTTTTA+AGG - chr5.4:69210283-69210302 MS.gene39805:intron 30.0%
!!! ACTTTTTGAGTTATTGTCAG+AGG - chr5.4:69211379-69211398 MS.gene39805:intron 30.0%
!!! ATGGACAATCGTTTTAAGAA+GGG - chr5.4:69212420-69212439 MS.gene39805:CDS 30.0%
!!! CTTTGCATGCATTTTTAAGT+TGG + chr5.4:69209780-69209799 None:intergenic 30.0%
AAAATGCATGCAAAGATTGG+GGG - chr5.4:69209785-69209804 MS.gene39805:intron 35.0%
AAGAAAATCCACCAGTCTAT+AGG - chr5.4:69212376-69212395 MS.gene39805:CDS 35.0%
AATACTTGAGGCAATTCTTC+TGG + chr5.4:69210033-69210052 None:intergenic 35.0%
AGAAAATCCACCAGTCTATA+GGG - chr5.4:69212377-69212396 MS.gene39805:CDS 35.0%
ATGAACAAGACGTTGTTGAA+AGG - chr5.4:69209881-69209900 MS.gene39805:intron 35.0%
GAAACCAACAAACCAATTAG+AGG - chr5.4:69209519-69209538 MS.gene39805:CDS 35.0%
GAATTCCATGATTAATCACC+TGG + chr5.4:69209816-69209835 None:intergenic 35.0%
GTCTTGGATGAGATGATTAA+TGG - chr5.4:69209844-69209863 MS.gene39805:intron 35.0%
GTTTGAGTAAGTGATGTGAA+AGG - chr5.4:69211822-69211841 MS.gene39805:intron 35.0%
TCTTACCACCAAGTCATAAA+GGG - chr5.4:69212259-69212278 MS.gene39805:CDS 35.0%
TGTTCAGATAACACAGTTGA+TGG - chr5.4:69212070-69212089 MS.gene39805:intron 35.0%
TTCTTCCAGGTGATTAATCA+TGG - chr5.4:69209808-69209827 MS.gene39805:intron 35.0%
TTTCGTCAGTGTTTATCATC+GGG - chr5.4:69212236-69212255 MS.gene39805:CDS 35.0%
! AAAGAATTGAGTTGTGCTGA+AGG - chr5.4:69211428-69211447 MS.gene39805:intron 35.0%
! ACTTTTATGTCCCTATAGAC+TGG + chr5.4:69212390-69212409 None:intergenic 35.0%
! ATAATTGGAGGTGGCTTTTA+GGG + chr5.4:69211231-69211250 None:intergenic 35.0%
! CAGCACAACTCAATTCTTTT+AGG + chr5.4:69211427-69211446 None:intergenic 35.0%
! CTTTTACAAGACCAAATTGG+TGG - chr5.4:69211545-69211564 MS.gene39805:intron 35.0%
! GCTGAAGGACTTTTTATTCA+AGG - chr5.4:69211443-69211462 MS.gene39805:intron 35.0%
! TATAATTGGAGGTGGCTTTT+AGG + chr5.4:69211232-69211251 None:intergenic 35.0%
! TCCGAGTGACATTATTTTCT+TGG + chr5.4:69211354-69211373 None:intergenic 35.0%
!! ATGTCTTTGAGATCTATGAC+CGG + chr5.4:69209715-69209734 None:intergenic 35.0%
!!! CATGGACAATCGTTTTAAGA+AGG - chr5.4:69212419-69212438 MS.gene39805:CDS 35.0%
!!! TGGACAATCGTTTTAAGAAG+GGG - chr5.4:69212421-69212440 MS.gene39805:CDS 35.0%
AAACTAGCTACCGAAACTCT+TGG + chr5.4:69212285-69212304 None:intergenic 40.0%
ACCAGCTTTCGATTCATCAA+AGG + chr5.4:69209587-69209606 None:intergenic 40.0%
ACCTTTGATGAATCGAAAGC+TGG - chr5.4:69209583-69209602 MS.gene39805:CDS 40.0%
ACTAGTCCAGACTCATTTAG+TGG + chr5.4:69211863-69211882 None:intergenic 40.0%
ATGAATACAGAGTTCACCGT+AGG - chr5.4:69210756-69210775 MS.gene39805:intron 40.0%
CAATCATGCTATGCGTATTG+AGG - chr5.4:69209747-69209766 MS.gene39805:CDS 40.0%
CGAGTTGTGATTGCAAAATC+TGG - chr5.4:69211127-69211146 MS.gene39805:intron 40.0%
CTAGTGACTAGTGAACATCA+AGG - chr5.4:69210408-69210427 MS.gene39805:CDS 40.0%
GAACTTGAAGACCACCAATT+TGG + chr5.4:69211559-69211578 None:intergenic 40.0%
GCTATGCGTATTGAGGTAAT+CGG - chr5.4:69209754-69209773 MS.gene39805:CDS 40.0%
GTACTACCACTAAATGAGTC+TGG - chr5.4:69211854-69211873 MS.gene39805:intron 40.0%
GTCTTACCACCAAGTCATAA+AGG - chr5.4:69212258-69212277 MS.gene39805:CDS 40.0%
GTTAATGTTCCTCCTCTACA+TGG - chr5.4:69211596-69211615 MS.gene39805:intron 40.0%
TATGACCGGAATACTCAAGT+TGG + chr5.4:69209701-69209720 None:intergenic 40.0%
TCATAAAGGGCCAAGAGTTT+CGG - chr5.4:69212272-69212291 MS.gene39805:CDS 40.0%
TCGATCCAACTTGAGTATTC+CGG - chr5.4:69209693-69209712 MS.gene39805:CDS 40.0%
TCTGTACCCATAGTTAACTC+TGG + chr5.4:69211494-69211513 None:intergenic 40.0%
TTTATGTCCCTATAGACTGG+TGG + chr5.4:69212387-69212406 None:intergenic 40.0%
! AGACTCTTTTGGATGTACCA+TGG - chr5.4:69209990-69210009 MS.gene39805:intron 40.0%
! CAGTGTTGTTCAATGTGTCA+CGG + chr5.4:69209660-69209679 None:intergenic 40.0%
! GCTATTTGGAGAGACTCTTT+TGG - chr5.4:69209979-69209998 MS.gene39805:intron 40.0%
! GTAAGAGGTCTTATAGAGTC+CGG - chr5.4:69209607-69209626 MS.gene39805:CDS 40.0%
!! GCTTCCTCTAATTGGTTTGT+TGG + chr5.4:69209526-69209545 None:intergenic 40.0%
!!! TCTTCTGGTTTTGGTGGATT+AGG + chr5.4:69210018-69210037 None:intergenic 40.0%
!!! TGAGGCAATTCTTCTGGTTT+TGG + chr5.4:69210027-69210046 None:intergenic 40.0%
ACAACAAGAGCTCCATGTAG+AGG + chr5.4:69211611-69211630 None:intergenic 45.0%
ACTCTTGGCCCTTTATGACT+TGG + chr5.4:69212270-69212289 None:intergenic 45.0%
CCTGAGCCAGAGTTAACTAT+GGG - chr5.4:69211485-69211504 MS.gene39805:intron 45.0%
GAATCGAAAGCTGGTGTAAG+AGG - chr5.4:69209592-69209611 MS.gene39805:CDS 45.0%
GAGTTATTGTCAGAGGCTCT+TGG - chr5.4:69211386-69211405 MS.gene39805:intron 45.0%
GATGTTCACTAGTCACTAGC+TGG + chr5.4:69210407-69210426 None:intergenic 45.0%
GCGTGGAATCTTTGTTACAC+CGG + chr5.4:69209629-69209648 None:intergenic 45.0%
TCCTGAGCCAGAGTTAACTA+TGG - chr5.4:69211484-69211503 MS.gene39805:intron 45.0%
! CTAAAAGCGCACTTGTGCAT+GGG - chr5.4:69211181-69211200 MS.gene39805:intron 45.0%
! GGAGCTCTTGTTGTCAACAT+AGG - chr5.4:69211617-69211636 MS.gene39805:intron 45.0%
!! GCATGATGGAAGCTCTAAGT+TGG - chr5.4:69212443-69212462 MS.gene39805:CDS 45.0%
!!! CGTTTTAAGAAGGGGCATGA+TGG - chr5.4:69212429-69212448 MS.gene39805:CDS 45.0%
!!! GGCAATTCTTCTGGTTTTGG+TGG + chr5.4:69210024-69210043 None:intergenic 45.0%
!!! TTTTGGTGGATTAGGAGCCA+TGG + chr5.4:69210010-69210029 None:intergenic 45.0%
!! TAAAAAAATTGTTAATATAA+TGG - chr5.4:69210910-69210929 MS.gene39805:intron 5.0%
!!! AAACAAATAATTTTTTTTTA+AGG + chr5.4:69210631-69210650 None:intergenic 5.0%
!!! ATATTTTAAACTTTTATTTT+GGG - chr5.4:69211267-69211286 MS.gene39805:intron 5.0%
!!! ATTTTAATATTATAAATCAA+TGG - chr5.4:69211158-69211177 MS.gene39805:intron 5.0%
ACAAGAGCTCCATGTAGAGG+AGG + chr5.4:69211608-69211627 None:intergenic 50.0%
CAAAGATTGGGGGTTCTTCC+AGG - chr5.4:69209795-69209814 MS.gene39805:intron 50.0%
GTTCACTAGTCACTAGCTGG+TGG + chr5.4:69210404-69210423 None:intergenic 50.0%
! CCCATAGTTAACTCTGGCTC+AGG + chr5.4:69211488-69211507 None:intergenic 50.0%
! CTTGGCCCTTTATGACTTGG+TGG + chr5.4:69212267-69212286 None:intergenic 50.0%
! GCTAAAAGCGCACTTGTGCA+TGG - chr5.4:69211180-69211199 MS.gene39805:intron 50.0%
! GTTAACTCTGGCTCAGGACA+TGG + chr5.4:69211482-69211501 None:intergenic 50.0%
GTGTCACGGTAGAACATGCG+TGG + chr5.4:69209646-69209665 None:intergenic 55.0%
! AACTCTGGCTCAGGACATGG+TGG + chr5.4:69211479-69211498 None:intergenic 55.0%
!! CTTAAGAGCTCTAGGGACGC+AGG + chr5.4:69210199-69210218 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 69209511 69212482 69209511 ID=MS.gene39805
chr5.4 mRNA 69209511 69212482 69209511 ID=MS.gene39805.t1;Parent=MS.gene39805
chr5.4 exon 69212122 69212482 69212122 ID=MS.gene39805.t1.exon1;Parent=MS.gene39805.t1
chr5.4 CDS 69212122 69212482 69212122 ID=cds.MS.gene39805.t1;Parent=MS.gene39805.t1
chr5.4 exon 69211938 69212022 69211938 ID=MS.gene39805.t1.exon2;Parent=MS.gene39805.t1
chr5.4 CDS 69211938 69212022 69211938 ID=cds.MS.gene39805.t1;Parent=MS.gene39805.t1
chr5.4 exon 69210341 69210662 69210341 ID=MS.gene39805.t1.exon3;Parent=MS.gene39805.t1
chr5.4 CDS 69210341 69210662 69210341 ID=cds.MS.gene39805.t1;Parent=MS.gene39805.t1
chr5.4 exon 69209511 69209774 69209511 ID=MS.gene39805.t1.exon4;Parent=MS.gene39805.t1
chr5.4 CDS 69209511 69209774 69209511 ID=cds.MS.gene39805.t1;Parent=MS.gene39805.t1
Gene Sequence

>MS.gene39805

ATGATGGTGAAACCAACAAACCAATTAGAGGAAGCTAATGATTCCAGTTATGATAGAAAAGTTGAAGTGACAACCTTTGATGAATCGAAAGCTGGTGTAAGAGGTCTTATAGAGTCCGGTGTAACAAAGATTCCACGCATGTTCTACCGTGACACATTGAACAACACTGAACATTTAGTCAATCGATCCAACTTGAGTATTCCGGTCATAGATCTCAAAGACATACACAACAATATCAATCATGCTATGCGTATTGAGGTAATCGGCCAACTTAAAAATGCATGCAAAGATTGGGGGTTCTTCCAGGTGATTAATCATGGAATTCCTATTAATGTCTTGGATGAGATGATTAATGGAATTCGTAGGTTTCATGAACAAGACGTTGTTGAAAGGAAAAAATTTTACAACCGTGATTTGACAAAGAAAATTATTTATTATTCCAATATTGGTTTGTATGTAGAAAAATCTGCTATTTGGAGAGACTCTTTTGGATGTACCATGGCTCCTAATCCACCAAAACCAGAAGAATTGCCTCAAGTATTTAGGTATTATTTTTAAATTATTTATTATAATTACAAGACAATTTTTTTTTAAAATAGTTTAGTGGCAAAATTCTCATACACATTAAATGTTGAAAAGTTCTTTAAAACAAAAGCTTTGAAAATTAAAAAATTGCGGGTTTGAACCTGCGTCCCTAGAGCTCTTAAGATATCAAATCTTCTTAAACTCAATGTTTGATGAGTTTTATTAGTAGTACTGGTCACTTGTACATTCCAATTATGGTGACTTTTAAGGTGCACAAGTGCTTAAATTTGTGTACCCATACACAAATGCTCATTTTACCATTGATTCAAGAATTTAAAAATTCAATGGCTTGGATTTAGGAAACACCACCAGCTAGTGACTAGTGAACATCAAGGAAATCAAAATTGCATTTATATATTCATAAAAAACATCATGAATAATTTAAATTAAAATAATTAAATGATATTTGATTGGTGTTAGTTTGAAACTCTATTTTGAAATATTATTTTAAGTAATTTAATAGATATAAAAAATTATTTATTTTTGTACGTATTCATTTTTTTTTACAAGTATATAACTTATTTGTTTTCTTCCTTAAAAAAAAATTATTTGTTTTCTTTTTAATCGGTGCTACATCTTCATTATAAAATCTTCTCTAAAAAAAGACTAAATATATACATGAAAAATTCCAACTAATGTCAAAAAATCAACTCAAGTTTAATGAATACAGAGTTCACCGTAGGTTCTTTTTTTTTTTTTTAAAGAAAAGTTCATCATAGGATTAATAAATATGAACATTTTCATTTTATGGTCACCATATTTTATAATGAAAATGTATCATTAGTTAAGAGAAAAATTATTATAAATTTTTCTATAAAAAAATTGTTAATATAATGGTTTAAAGGGTAACACTGAAAGAAAAAAAAAGTGTCATACTGTCATTTATGATTTTCACGGTTTAAATTTAAGGAAGTGACACTTAATTATAAATAATTGCAAAAATATAATATTGAATAAGTTTTATATCTATATATTAATTTACAATTCACAAACTTGGAGTATATTGTAATTTGCTAAAAAAATCTGGAGTACGAGTTGTGATTGCAAAATCTGGTTCCTTAAATTTTAATATTATAAATCAATGGCTAAAAGCGCACTTGTGCATGGGTACACAAATTTATTAATTTGTGCACCCTAAAAGCCACCTCCAATTATATAAACTAAAGGTTTCATATTTTAAACTTTTATTTTGGGGAATATTTTAAACTTTTTACTAATTGTTTGTTTACATGCAGAGACATTATAATAGAATATTCCAAGAAAATAATGTCACTCGGATCTACACTTTTTGAGTTATTGTCAGAGGCTCTTGGCTTGAATTCATCTTACCTAAAAGAATTGAGTTGTGCTGAAGGACTTTTTATTCAAGGTCATTATTATCCACCATGTCCTGAGCCAGAGTTAACTATGGGTACAGACAAGCACGCTGATTCTAGCTTCATGACAATACTTTTACAAGACCAAATTGGTGGTCTTCAAGTTCTTCATGAGAATCAATGGGTTAATGTTCCTCCTCTACATGGAGCTCTTGTTGTCAACATAGGAGATCTTTTACAAGTAAGTATTTAATGGTTACTATAGACAATTTTTTTTTTTTTTGGTAATTTATATGTTTTCGTTTTCATCATGATTGTTTTATTTTATAAAACTGAAAGAAAACGAGGTTCTTTGACTTTGCAATTGATATTACTATCATACTTTTTAAGATGTCAATTTAGCGATAAAAGTTTGAGTAAGTGATGTGAAAGGAATGAAATAGTACTACCACTAAATGAGTCTGGACTAGTACTACGAATAAATGATTTAAGAGAAATAATTTTTGGACATCAAAATATTGATGTTAAATAAGTTGTCATTTATTTTTTGTGTGAATTTTTAAAATGTATCTAAAGTGTAGAAGATAAAAAAAAAAAAAAAAAATATGAGACAGATGGAGATGAAGACATATAATGCTATATGATATATGTACTAATATGTTCAGATAACACAGTTGATGGTTTCATTTTTAATTTATCTGATTAAATATGAGTTGAATCCCAACCAAAATATAAATATTTGGTCACATAGTTTATAAACAGCTTGTGTAAACTATATATTTATCAATTTCTTTGTTATTGTTACAGCTTATAACAAATGACAATTTCGTCAGTGTTTATCATCGGGTCTTACCACCAAGTCATAAAGGGCCAAGAGTTTCGGTAGCTAGTTTCTTTGCAAATTCTCATGATCCAACTGAAGTTTCATCAAAGATTTATGGTCCTATTAAGGAACTGATATCAGAAGAAAATCCACCAGTCTATAGGGACATAAAAGTTGCAGAATACATGGACAATCGTTTTAAGAAGGGGCATGATGGAAGCTCTAAGTTGGAGCCTTTCAAGTTGTGA

Protein sequence

>MS.gene39805.t1

MMVKPTNQLEEANDSSYDRKVEVTTFDESKAGVRGLIESGVTKIPRMFYRDTLNNTEHLVNRSNLSIPVIDLKDIHNNINHAMRIEVIGQLKNACKDWGFFQVINHGIPINVLDEMINGIQKSAIWRDSFGCTMAPNPPKPEELPQVFRDIIIEYSKKIMSLGSTLFELLSEALGLNSSYLKELSCAEGLFIQGHYYPPCPEPELTMGTDKHADSSFMTILLQDQIGGLQVLHENQWVNVPPLHGALVVNIGDLLQLITNDNFVSVYHRVLPPSHKGPRVSVASFFANSHDPTEVSSKIYGPIKELISEENPPVYRDIKVAEYMDNRFKKGHDGSSKLEPFKL