Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42383.t1 | XP_003608431.1 | 94.7 | 376 | 14 | 1 | 1 | 376 | 296 | 665 | 2.10E-196 | 694.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42383.t1 | Q8RXN0 | 48.5 | 359 | 173 | 2 | 12 | 370 | 334 | 680 | 1.9e-89 | 330.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42383.t1 | G7JCQ3 | 94.7 | 376 | 14 | 1 | 1 | 376 | 296 | 665 | 1.5e-196 | 694.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene42383 | -0.836679 | 8.12E-57 | -1.69E-46 |
MS.gene049217 | MS.gene42383 | -0.826711 | 2.33E-54 | -1.69E-46 |
MS.gene049222 | MS.gene42383 | -0.825355 | 4.91E-54 | -1.69E-46 |
MS.gene049232 | MS.gene42383 | -0.806493 | 8.01E-50 | -1.69E-46 |
MS.gene049285 | MS.gene42383 | -0.84176 | 3.91E-58 | -1.69E-46 |
MS.gene049313 | MS.gene42383 | 0.803758 | 2.99E-49 | -1.69E-46 |
MS.gene049320 | MS.gene42383 | -0.849944 | 2.34E-60 | -1.69E-46 |
MS.gene049627 | MS.gene42383 | -0.866613 | 2.51E-65 | -1.69E-46 |
MS.gene049865 | MS.gene42383 | -0.817671 | 2.92E-52 | -1.69E-46 |
MS.gene05010 | MS.gene42383 | -0.834488 | 2.91E-56 | -1.69E-46 |
MS.gene050129 | MS.gene42383 | 0.805201 | 1.50E-49 | -1.69E-46 |
MS.gene050163 | MS.gene42383 | -0.824642 | 7.22E-54 | -1.69E-46 |
MS.gene050165 | MS.gene42383 | -0.816399 | 5.64E-52 | -1.69E-46 |
MS.gene050170 | MS.gene42383 | -0.825768 | 3.92E-54 | -1.69E-46 |
MS.gene050363 | MS.gene42383 | 0.823379 | 1.43E-53 | -1.69E-46 |
MS.gene050381 | MS.gene42383 | 0.827243 | 1.74E-54 | -1.69E-46 |
MS.gene050496 | MS.gene42383 | -0.80468 | 1.92E-49 | -1.69E-46 |
MS.gene050504 | MS.gene42383 | -0.866132 | 3.56E-65 | -1.69E-46 |
MS.gene050518 | MS.gene42383 | -0.822005 | 2.99E-53 | -1.69E-46 |
MS.gene050577 | MS.gene42383 | -0.844294 | 8.26E-59 | -1.69E-46 |
MS.gene050612 | MS.gene42383 | -0.835672 | 1.46E-56 | -1.69E-46 |
MS.gene050675 | MS.gene42383 | -0.822531 | 2.25E-53 | -1.69E-46 |
MS.gene050699 | MS.gene42383 | -0.855826 | 4.86E-62 | -1.69E-46 |
MS.gene050772 | MS.gene42383 | -0.804562 | 2.04E-49 | -1.69E-46 |
MS.gene050868 | MS.gene42383 | -0.837326 | 5.55E-57 | -1.69E-46 |
MS.gene050871 | MS.gene42383 | -0.835883 | 1.29E-56 | -1.69E-46 |
MS.gene05087 | MS.gene42383 | -0.81788 | 2.62E-52 | -1.69E-46 |
MS.gene050883 | MS.gene42383 | 0.851372 | 9.27E-61 | -1.69E-46 |
MS.gene050904 | MS.gene42383 | -0.814115 | 1.82E-51 | -1.69E-46 |
MS.gene050986 | MS.gene42383 | -0.854209 | 1.43E-61 | -1.69E-46 |
MS.gene051127 | MS.gene42383 | 0.818096 | 2.34E-52 | -1.69E-46 |
MS.gene05141 | MS.gene42383 | 0.831347 | 1.76E-55 | -1.69E-46 |
MS.gene051551 | MS.gene42383 | -0.810495 | 1.12E-50 | -1.69E-46 |
MS.gene051560 | MS.gene42383 | -0.80856 | 2.92E-50 | -1.69E-46 |
MS.gene051694 | MS.gene42383 | -0.81388 | 2.05E-51 | -1.69E-46 |
MS.gene051946 | MS.gene42383 | 0.864869 | 8.92E-65 | -1.69E-46 |
MS.gene052164 | MS.gene42383 | -0.84984 | 2.50E-60 | -1.69E-46 |
MS.gene052482 | MS.gene42383 | -0.876641 | 1.19E-68 | -1.69E-46 |
MS.gene052486 | MS.gene42383 | -0.885009 | 1.18E-71 | -1.69E-46 |
MS.gene052503 | MS.gene42383 | -0.806744 | 7.09E-50 | -1.69E-46 |
MS.gene052823 | MS.gene42383 | -0.806959 | 6.39E-50 | -1.69E-46 |
MS.gene052825 | MS.gene42383 | -0.804404 | 2.20E-49 | -1.69E-46 |
MS.gene052966 | MS.gene42383 | -0.816634 | 5.00E-52 | -1.69E-46 |
MS.gene053203 | MS.gene42383 | -0.844098 | 9.33E-59 | -1.69E-46 |
MS.gene053213 | MS.gene42383 | -0.824031 | 1.01E-53 | -1.69E-46 |
MS.gene053286 | MS.gene42383 | -0.824672 | 7.11E-54 | -1.69E-46 |
MS.gene053420 | MS.gene42383 | 0.821714 | 3.49E-53 | -1.69E-46 |
MS.gene053436 | MS.gene42383 | -0.802318 | 5.94E-49 | -1.69E-46 |
MS.gene053480 | MS.gene42383 | -0.824096 | 9.71E-54 | -1.69E-46 |
MS.gene053549 | MS.gene42383 | 0.952908 | 8.75E-111 | -1.69E-46 |
MS.gene053574 | MS.gene42383 | -0.80939 | 1.94E-50 | -1.69E-46 |
MS.gene053626 | MS.gene42383 | -0.810023 | 1.42E-50 | -1.69E-46 |
MS.gene053824 | MS.gene42383 | -0.804624 | 1.98E-49 | -1.69E-46 |
MS.gene054595 | MS.gene42383 | -0.812196 | 4.79E-51 | -1.69E-46 |
MS.gene054600 | MS.gene42383 | -0.810988 | 8.76E-51 | -1.69E-46 |
MS.gene054642 | MS.gene42383 | -0.801164 | 1.02E-48 | -1.69E-46 |
MS.gene054708 | MS.gene42383 | 0.809763 | 1.61E-50 | -1.69E-46 |
MS.gene05470 | MS.gene42383 | -0.860755 | 1.66E-63 | -1.69E-46 |
MS.gene054927 | MS.gene42383 | -0.801915 | 7.19E-49 | -1.69E-46 |
MS.gene054954 | MS.gene42383 | -0.842042 | 3.29E-58 | -1.69E-46 |
MS.gene055154 | MS.gene42383 | 0.822443 | 2.36E-53 | -1.69E-46 |
MS.gene055362 | MS.gene42383 | -0.861731 | 8.35E-64 | -1.69E-46 |
MS.gene055502 | MS.gene42383 | -0.856147 | 3.92E-62 | -1.69E-46 |
MS.gene055577 | MS.gene42383 | -0.842406 | 2.64E-58 | -1.69E-46 |
MS.gene055750 | MS.gene42383 | -0.805012 | 1.64E-49 | -1.69E-46 |
MS.gene05589 | MS.gene42383 | -0.834144 | 3.55E-56 | -1.69E-46 |
MS.gene056310 | MS.gene42383 | 0.846015 | 2.83E-59 | -1.69E-46 |
MS.gene056311 | MS.gene42383 | 0.864236 | 1.41E-64 | -1.69E-46 |
MS.gene056313 | MS.gene42383 | 0.800799 | 1.22E-48 | -1.69E-46 |
MS.gene056408 | MS.gene42383 | 0.83647 | 9.19E-57 | -1.69E-46 |
MS.gene056409 | MS.gene42383 | -0.827078 | 1.91E-54 | -1.69E-46 |
MS.gene056504 | MS.gene42383 | -0.84572 | 3.41E-59 | -1.69E-46 |
MS.gene056510 | MS.gene42383 | -0.837156 | 6.14E-57 | -1.69E-46 |
MS.gene056550 | MS.gene42383 | 0.830831 | 2.35E-55 | -1.69E-46 |
MS.gene056610 | MS.gene42383 | -0.83295 | 7.06E-56 | -1.69E-46 |
MS.gene056657 | MS.gene42383 | -0.824102 | 9.68E-54 | -1.69E-46 |
MS.gene056692 | MS.gene42383 | -0.823346 | 1.46E-53 | -1.69E-46 |
MS.gene056878 | MS.gene42383 | -0.829416 | 5.21E-55 | -1.69E-46 |
MS.gene057014 | MS.gene42383 | 0.878792 | 2.11E-69 | -1.69E-46 |
MS.gene057831 | MS.gene42383 | -0.833275 | 5.86E-56 | -1.69E-46 |
MS.gene058157 | MS.gene42383 | -0.807427 | 5.08E-50 | -1.69E-46 |
MS.gene05837 | MS.gene42383 | -0.839995 | 1.13E-57 | -1.69E-46 |
MS.gene058419 | MS.gene42383 | -0.828771 | 7.47E-55 | -1.69E-46 |
MS.gene058493 | MS.gene42383 | 0.813143 | 2.97E-51 | -1.69E-46 |
MS.gene058494 | MS.gene42383 | 0.833903 | 4.08E-56 | -1.69E-46 |
MS.gene058544 | MS.gene42383 | -0.817196 | 3.74E-52 | -1.69E-46 |
MS.gene058773 | MS.gene42383 | -0.840752 | 7.19E-58 | -1.69E-46 |
MS.gene059022 | MS.gene42383 | -0.866621 | 2.49E-65 | -1.69E-46 |
MS.gene059023 | MS.gene42383 | -0.848576 | 5.61E-60 | -1.69E-46 |
MS.gene059223 | MS.gene42383 | 0.84813 | 7.46E-60 | -1.69E-46 |
MS.gene059236 | MS.gene42383 | 0.806595 | 7.62E-50 | -1.69E-46 |
MS.gene059677 | MS.gene42383 | -0.845487 | 3.94E-59 | -1.69E-46 |
MS.gene059718 | MS.gene42383 | -0.850467 | 1.67E-60 | -1.69E-46 |
MS.gene059756 | MS.gene42383 | -0.828931 | 6.83E-55 | -1.69E-46 |
MS.gene059801 | MS.gene42383 | -0.800856 | 1.18E-48 | -1.69E-46 |
MS.gene059837 | MS.gene42383 | -0.831 | 2.14E-55 | -1.69E-46 |
MS.gene059865 | MS.gene42383 | -0.830075 | 3.60E-55 | -1.69E-46 |
MS.gene06000 | MS.gene42383 | -0.818955 | 1.50E-52 | -1.69E-46 |
MS.gene060595 | MS.gene42383 | 0.850118 | 2.09E-60 | -1.69E-46 |
MS.gene060602 | MS.gene42383 | 0.839669 | 1.38E-57 | -1.69E-46 |
MS.gene060703 | MS.gene42383 | -0.82247 | 2.33E-53 | -1.69E-46 |
MS.gene060762 | MS.gene42383 | -0.835041 | 2.11E-56 | -1.69E-46 |
MS.gene060778 | MS.gene42383 | -0.832673 | 8.27E-56 | -1.69E-46 |
MS.gene06077 | MS.gene42383 | -0.896398 | 3.83E-76 | -1.69E-46 |
MS.gene060982 | MS.gene42383 | -0.824656 | 7.17E-54 | -1.69E-46 |
MS.gene061150 | MS.gene42383 | -0.804832 | 1.79E-49 | -1.69E-46 |
MS.gene061226 | MS.gene42383 | 0.821358 | 4.21E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42383.t1 | MTR_4g094010 | 95.213 | 376 | 12 | 1 | 1 | 376 | 296 | 665 | 0.0 | 738 |
MS.gene42383.t1 | MTR_4g094050 | 66.223 | 376 | 114 | 4 | 1 | 372 | 319 | 685 | 1.51e-173 | 500 |
MS.gene42383.t1 | MTR_4g094060 | 64.456 | 377 | 125 | 3 | 1 | 376 | 319 | 687 | 8.20e-170 | 490 |
MS.gene42383.t1 | MTR_4g054020 | 61.789 | 369 | 126 | 4 | 2 | 366 | 217 | 574 | 1.52e-161 | 465 |
MS.gene42383.t1 | MTR_4g093845 | 51.136 | 352 | 151 | 7 | 1 | 346 | 301 | 637 | 6.34e-116 | 351 |
MS.gene42383.t1 | MTR_4g094090 | 50.562 | 356 | 159 | 7 | 1 | 351 | 273 | 616 | 1.94e-114 | 347 |
MS.gene42383.t1 | MTR_6g066240 | 47.354 | 359 | 178 | 2 | 12 | 370 | 331 | 678 | 1.18e-105 | 326 |
MS.gene42383.t1 | MTR_4g076970 | 39.167 | 360 | 205 | 4 | 9 | 367 | 314 | 660 | 2.61e-84 | 270 |
MS.gene42383.t1 | MTR_4g076900 | 40.449 | 356 | 200 | 3 | 12 | 367 | 295 | 638 | 1.64e-83 | 267 |
MS.gene42383.t1 | MTR_4g076940 | 40.449 | 356 | 200 | 4 | 12 | 367 | 226 | 569 | 6.68e-79 | 254 |
MS.gene42383.t1 | MTR_4g076940 | 40.169 | 356 | 201 | 3 | 12 | 367 | 319 | 662 | 8.20e-78 | 253 |
MS.gene42383.t1 | MTR_4g076940 | 40.449 | 356 | 200 | 4 | 12 | 367 | 359 | 702 | 1.79e-77 | 253 |
MS.gene42383.t1 | MTR_2g095390 | 32.836 | 335 | 205 | 4 | 17 | 345 | 392 | 712 | 6.08e-48 | 173 |
MS.gene42383.t1 | MTR_2g078080 | 28.975 | 283 | 183 | 5 | 62 | 338 | 334 | 604 | 6.77e-29 | 118 |
MS.gene42383.t1 | MTR_4g094020 | 46.575 | 146 | 49 | 5 | 1 | 145 | 229 | 346 | 8.14e-27 | 109 |
MS.gene42383.t1 | MTR_4g116540 | 24.189 | 339 | 234 | 7 | 13 | 338 | 306 | 634 | 9.33e-27 | 112 |
MS.gene42383.t1 | MTR_3g096410 | 25.899 | 278 | 196 | 4 | 62 | 339 | 367 | 634 | 1.64e-26 | 111 |
MS.gene42383.t1 | MTR_8g093840 | 25.899 | 278 | 196 | 4 | 62 | 339 | 367 | 634 | 5.47e-26 | 110 |
MS.gene42383.t1 | MTR_5g030910 | 25.088 | 283 | 198 | 5 | 61 | 343 | 455 | 723 | 7.70e-22 | 97.8 |
MS.gene42383.t1 | MTR_1g115790 | 26.512 | 215 | 156 | 2 | 61 | 275 | 446 | 658 | 1.68e-20 | 93.6 |
MS.gene42383.t1 | MTR_1g108340 | 26.444 | 329 | 207 | 10 | 56 | 374 | 388 | 691 | 4.52e-20 | 92.4 |
MS.gene42383.t1 | MTR_1g108340 | 26.444 | 329 | 207 | 10 | 56 | 374 | 388 | 691 | 4.52e-20 | 92.4 |
MS.gene42383.t1 | MTR_1g099570 | 24.400 | 250 | 181 | 6 | 97 | 345 | 367 | 609 | 8.20e-19 | 88.6 |
MS.gene42383.t1 | MTR_4g094080 | 44.762 | 105 | 47 | 3 | 1 | 98 | 61 | 161 | 8.49e-18 | 83.2 |
MS.gene42383.t1 | MTR_7g100120 | 24.074 | 216 | 162 | 2 | 61 | 276 | 441 | 654 | 2.45e-17 | 84.3 |
MS.gene42383.t1 | MTR_8g107450 | 23.782 | 349 | 233 | 11 | 6 | 339 | 479 | 809 | 3.13e-17 | 84.0 |
MS.gene42383.t1 | MTR_1g054960 | 25.000 | 288 | 187 | 8 | 5 | 278 | 275 | 547 | 2.46e-14 | 74.7 |
MS.gene42383.t1 | MTR_5g070320 | 23.913 | 276 | 191 | 7 | 59 | 334 | 223 | 479 | 5.31e-12 | 67.8 |
MS.gene42383.t1 | MTR_5g070320 | 23.913 | 276 | 191 | 7 | 59 | 334 | 319 | 575 | 8.14e-12 | 67.4 |
MS.gene42383.t1 | MTR_5g070320 | 23.913 | 276 | 191 | 7 | 59 | 334 | 510 | 766 | 8.17e-12 | 67.4 |
MS.gene42383.t1 | MTR_7g106880 | 22.997 | 287 | 199 | 7 | 2 | 276 | 262 | 538 | 2.20e-11 | 65.9 |
MS.gene42383.t1 | MTR_7g106880 | 22.997 | 287 | 199 | 7 | 2 | 276 | 413 | 689 | 2.71e-11 | 65.5 |
MS.gene42383.t1 | MTR_1g054935 | 23.985 | 271 | 182 | 7 | 19 | 278 | 283 | 540 | 4.18e-11 | 64.7 |
MS.gene42383.t1 | MTR_1g054935 | 23.308 | 266 | 186 | 6 | 21 | 278 | 447 | 702 | 8.51e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42383.t1 | AT1G17840 | 49.025 | 359 | 171 | 2 | 12 | 370 | 334 | 680 | 1.86e-99 | 310 |
MS.gene42383.t1 | AT3G21090 | 42.363 | 347 | 188 | 3 | 21 | 367 | 320 | 654 | 6.73e-89 | 282 |
MS.gene42383.t1 | AT1G51460 | 38.889 | 342 | 190 | 4 | 26 | 367 | 327 | 649 | 1.85e-78 | 254 |
MS.gene42383.t1 | AT1G51500 | 40.346 | 347 | 196 | 4 | 21 | 367 | 320 | 655 | 1.08e-76 | 250 |
MS.gene42383.t1 | AT2G28070 | 32.407 | 324 | 204 | 3 | 17 | 339 | 399 | 708 | 6.55e-51 | 181 |
MS.gene42383.t1 | AT2G28070 | 32.407 | 324 | 204 | 3 | 17 | 339 | 399 | 708 | 6.55e-51 | 181 |
MS.gene42383.t1 | AT5G19410 | 24.535 | 269 | 192 | 7 | 76 | 343 | 372 | 630 | 5.46e-28 | 115 |
MS.gene42383.t1 | AT5G19410 | 24.535 | 269 | 192 | 7 | 76 | 343 | 363 | 621 | 5.53e-28 | 115 |
MS.gene42383.t1 | AT2G13610 | 25.540 | 278 | 196 | 5 | 62 | 339 | 370 | 636 | 1.40e-25 | 108 |
MS.gene42383.t1 | AT1G53270 | 26.882 | 279 | 174 | 5 | 62 | 338 | 331 | 581 | 4.65e-23 | 101 |
MS.gene42383.t1 | AT4G25750 | 24.219 | 256 | 175 | 5 | 91 | 339 | 327 | 570 | 7.92e-21 | 94.4 |
MS.gene42383.t1 | AT5G52860 | 24.096 | 332 | 233 | 9 | 13 | 339 | 265 | 582 | 1.10e-20 | 94.0 |
MS.gene42383.t1 | AT2G37360 | 24.016 | 254 | 186 | 3 | 28 | 276 | 409 | 660 | 1.73e-19 | 90.9 |
MS.gene42383.t1 | AT3G55110 | 24.651 | 215 | 160 | 2 | 62 | 276 | 401 | 613 | 2.01e-19 | 90.5 |
MS.gene42383.t1 | AT3G55100 | 25.352 | 213 | 157 | 2 | 64 | 276 | 357 | 567 | 2.11e-19 | 90.5 |
MS.gene42383.t1 | AT3G55100 | 25.352 | 213 | 157 | 2 | 64 | 276 | 357 | 567 | 2.11e-19 | 90.5 |
MS.gene42383.t1 | AT5G13580 | 26.047 | 215 | 157 | 2 | 61 | 275 | 419 | 631 | 3.80e-19 | 89.7 |
MS.gene42383.t1 | AT3G55130 | 23.200 | 250 | 186 | 3 | 31 | 276 | 383 | 630 | 2.61e-18 | 87.0 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 2.92e-18 | 87.0 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 2.92e-18 | 87.0 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 4.47e-18 | 86.3 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 4.47e-18 | 86.3 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 4.56e-18 | 86.3 |
MS.gene42383.t1 | AT2G01320 | 26.780 | 295 | 187 | 11 | 2 | 281 | 329 | 609 | 4.69e-18 | 86.3 |
MS.gene42383.t1 | AT3G55090 | 24.880 | 209 | 155 | 2 | 67 | 275 | 434 | 640 | 8.54e-18 | 85.5 |
MS.gene42383.t1 | AT3G53510 | 25.758 | 264 | 180 | 4 | 22 | 276 | 388 | 644 | 3.09e-17 | 84.0 |
MS.gene42383.t1 | AT3G21080 | 34.247 | 146 | 79 | 4 | 206 | 346 | 106 | 239 | 6.68e-16 | 77.4 |
MS.gene42383.t1 | AT2G39350 | 23.923 | 209 | 157 | 2 | 67 | 275 | 438 | 644 | 1.05e-14 | 76.3 |
MS.gene42383.t1 | AT2G29940 | 22.472 | 267 | 200 | 3 | 8 | 269 | 1095 | 1359 | 2.37e-11 | 66.2 |
Find 73 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTATAGTATTGTCTTTAA+AGG | 0.148699 | 4.3:+20461535 | MS.gene42383:CDS |
ATGATCTTCCTAATCCATTT+TGG | 0.156981 | 4.3:+20462625 | MS.gene42383:CDS |
GATATCAATTGCTTGTTCTA+TGG | 0.227852 | 4.3:-20461450 | None:intergenic |
TTTGAACGTGAAAGATTAAA+TGG | 0.233081 | 4.3:+20462315 | MS.gene42383:CDS |
ATTGAAATCATCAGCAAATA+TGG | 0.242245 | 4.3:-20462387 | None:intergenic |
AACATAGGGTATTTCCAAAA+TGG | 0.259735 | 4.3:-20462639 | None:intergenic |
AGCCACTGTCTTTAATGATT+TGG | 0.262428 | 4.3:+20461787 | MS.gene42383:CDS |
TTTAATTTCTTGGTTTCTTT+CGG | 0.280423 | 4.3:-20461495 | None:intergenic |
TACCCTCCAGGTCTTCAAAA+AGG | 0.282844 | 4.3:+20462432 | MS.gene42383:CDS |
ATGATTCCCATTAGAAAATC+AGG | 0.291192 | 4.3:-20462543 | None:intergenic |
CTGATGATTTCAATCATTCC+TGG | 0.299780 | 4.3:+20462396 | MS.gene42383:CDS |
CATGTTCACAAAAGATCTTC+TGG | 0.312879 | 4.3:-20461702 | None:intergenic |
TTCGTGATCTTGGCTATTAT+TGG | 0.317963 | 4.3:+20461726 | MS.gene42383:CDS |
TAAAAGTAATGGCTCAATTC+AGG | 0.332362 | 4.3:+20461811 | MS.gene42383:CDS |
TTTCTAATGGGAATCATAAC+TGG | 0.337952 | 4.3:+20462549 | MS.gene42383:CDS |
GGTGTAACTGCATATGTAAT+TGG | 0.355346 | 4.3:+20462345 | MS.gene42383:CDS |
GGGTATTTCCAAAATGGATT+AGG | 0.357240 | 4.3:-20462633 | None:intergenic |
AAATTTGAAAGAGATGAAAT+TGG | 0.358441 | 4.3:+20462723 | MS.gene42383:CDS |
TACTCAAAGTGGGTTGATCT+TGG | 0.362481 | 4.3:+20462828 | MS.gene42383:CDS |
CACCAATGGTCATGAAAGTT+AGG | 0.401646 | 4.3:-20461959 | None:intergenic |
GTGAACATGTTTCGTGATCT+TGG | 0.409054 | 4.3:+20461716 | MS.gene42383:CDS |
ATAACTGGTGCTGGAATTCA+AGG | 0.410331 | 4.3:+20462564 | MS.gene42383:CDS |
TGGTGGATTCCCTTCTTATG+TGG | 0.415254 | 4.3:+20461977 | MS.gene42383:CDS |
GGTTGATCTTGGAGTATTGT+TGG | 0.424413 | 4.3:+20462839 | MS.gene42383:CDS |
GGCTATTATTGGTTACGCCT+TGG | 0.429860 | 4.3:+20461737 | MS.gene42383:CDS |
GTTGATCTTGGAGTATTGTT+GGG | 0.434086 | 4.3:+20462840 | MS.gene42383:CDS |
CACTTATGTCGGTGTCTCCT+AGG | 0.440631 | 4.3:+20462937 | MS.gene42383:CDS |
ATGGGAATCATAACTGGTGC+TGG | 0.440680 | 4.3:+20462555 | MS.gene42383:CDS |
TTCCTAACTTTCATGACCAT+TGG | 0.458620 | 4.3:+20461957 | MS.gene42383:CDS |
AATGATTTGGATAAAAGTAA+TGG | 0.458739 | 4.3:+20461800 | MS.gene42383:CDS |
AAATGGATTAGGAAGATCAT+TGG | 0.460933 | 4.3:-20462622 | None:intergenic |
GAAAGATTAAATGGACACTA+TGG | 0.460958 | 4.3:+20462324 | MS.gene42383:CDS |
GAGATGGATTTAGCAGAGAC+TGG | 0.477488 | 4.3:+20461419 | MS.gene42383:CDS |
CTAACTTTCATGACCATTGG+TGG | 0.478663 | 4.3:+20461960 | MS.gene42383:CDS |
TTCATGTCCTCCACATAAGA+AGG | 0.479736 | 4.3:-20461987 | None:intergenic |
GATGAAATTGGTGGTGGTGG+TGG | 0.481966 | 4.3:+20462735 | MS.gene42383:CDS |
GACATAAGTGACATAACAAT+AGG | 0.486627 | 4.3:-20462924 | None:intergenic |
TAGGCAAACAAGACAAGTCT+TGG | 0.487764 | 4.3:+20462956 | MS.gene42383:CDS |
TGTTCTATATTGCCTTTCAC+AGG | 0.489236 | 4.3:+20462658 | MS.gene42383:CDS |
CAAGGGATTATGATGTTGGC+AGG | 0.499670 | 4.3:+20462582 | MS.gene42383:CDS |
AAGACTTGTCTTGTTTGCCT+AGG | 0.501633 | 4.3:-20462954 | None:intergenic |
AATGGATTAGGAAGATCATT+GGG | 0.503000 | 4.3:-20462621 | None:intergenic |
GGATCACTCAATTACATTAG+TGG | 0.505948 | 4.3:+20462765 | MS.gene42383:CDS |
TTCTTATGTGGAGGACATGA+AGG | 0.508636 | 4.3:+20461989 | MS.gene42383:CDS |
GCCATAGCATATTACCCTCC+AGG | 0.509466 | 4.3:+20462420 | MS.gene42383:CDS |
AATTCAAGGGATTATGATGT+TGG | 0.510525 | 4.3:+20462578 | MS.gene42383:CDS |
GGGTAATATGCTATGGCTCC+AGG | 0.511427 | 4.3:-20462414 | None:intergenic |
TGAAAGGCAATATAGAACAT+AGG | 0.514456 | 4.3:-20462654 | None:intergenic |
AGAGATGAAATTGGTGGTGG+TGG | 0.529076 | 4.3:+20462732 | MS.gene42383:CDS |
TGGATTCCCTTCTTATGTGG+AGG | 0.531042 | 4.3:+20461980 | MS.gene42383:CDS |
TCTTATAAGAATGAGTTTGA+AGG | 0.538328 | 4.3:+20462696 | MS.gene42383:CDS |
TATACAACATCTATATGTAA+AGG | 0.538931 | 4.3:-20462996 | None:intergenic |
ACCTGGAGGGTAATATGCTA+TGG | 0.542119 | 4.3:-20462421 | None:intergenic |
TATTGTTATGTCACTTATGT+CGG | 0.544402 | 4.3:+20462926 | MS.gene42383:CDS |
GAAAGGCAATATAGAACATA+GGG | 0.546042 | 4.3:-20462653 | None:intergenic |
TAGATATGAGTTACTCAAAG+TGG | 0.553373 | 4.3:+20462817 | MS.gene42383:CDS |
CCTTGGCATATATATTGCGT+TGG | 0.554763 | 4.3:+20461754 | MS.gene42383:CDS |
ATCCAAATCATTAAAGACAG+TGG | 0.564200 | 4.3:-20461789 | None:intergenic |
ATATGTAAAGGAGTGGCACT+AGG | 0.573329 | 4.3:-20462984 | None:intergenic |
TTTGAAAGAGATGAAATTGG+TGG | 0.584768 | 4.3:+20462726 | MS.gene42383:CDS |
TGATTCCCATTAGAAAATCA+GGG | 0.592259 | 4.3:-20462542 | None:intergenic |
GAAAGAGATGAAATTGGTGG+TGG | 0.595546 | 4.3:+20462729 | MS.gene42383:CDS |
TTGAAAAGCATACCTGTGAA+AGG | 0.601275 | 4.3:-20462670 | None:intergenic |
TCAATGTTAGGATATTGAGA+TGG | 0.603713 | 4.3:+20461403 | None:intergenic |
AGATATGAGTTACTCAAAGT+GGG | 0.605112 | 4.3:+20462818 | MS.gene42383:CDS |
AACATCTATATGTAAAGGAG+TGG | 0.624574 | 4.3:-20462991 | None:intergenic |
CCAACGCAATATATATGCCA+AGG | 0.625218 | 4.3:-20461754 | None:intergenic |
ATGAAGAATATGAGCTCACA+AGG | 0.626092 | 4.3:-20461472 | None:intergenic |
GGGATTATGATGTTGGCAGG+TGG | 0.630683 | 4.3:+20462585 | MS.gene42383:CDS |
TGAGAACTAAGCACTGATTG+AGG | 0.631489 | 4.3:-20461679 | None:intergenic |
TCATGTCCTCCACATAAGAA+GGG | 0.633774 | 4.3:-20461986 | None:intergenic |
ATAAGAAGGGAATCCACCAA+TGG | 0.674842 | 4.3:-20461973 | None:intergenic |
TAACTGGTGCTGGAATTCAA+GGG | 0.675155 | 4.3:+20462565 | MS.gene42383:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATACTTCATTTTTAATTTCT+TGG | - | chr4.3:20461508-20461527 | None:intergenic | 15.0% |
!!! | CACTAAATTATTGTTTTATT+CGG | + | chr4.3:20462254-20462273 | MS.gene42383:intron | 15.0% |
!!! | CATATGTTATTAATTTGTAT+AGG | + | chr4.3:20462290-20462309 | MS.gene42383:intron | 15.0% |
!! | AAATTTGAAAGAGATGAAAT+TGG | + | chr4.3:20462723-20462742 | MS.gene42383:CDS | 20.0% |
!! | GCAAATATATATTGAATGAA+TGG | + | chr4.3:20462051-20462070 | MS.gene42383:intron | 20.0% |
!! | TATACAACATCTATATGTAA+AGG | - | chr4.3:20462999-20463018 | None:intergenic | 20.0% |
!!! | AATGATTTGGATAAAAGTAA+TGG | + | chr4.3:20461800-20461819 | MS.gene42383:CDS | 20.0% |
!!! | TAAATTTAGCTCAAATTTAG+AGG | - | chr4.3:20461564-20461583 | None:intergenic | 20.0% |
!!! | TTTAATTTCTTGGTTTCTTT+CGG | - | chr4.3:20461498-20461517 | None:intergenic | 20.0% |
! | AGGTCAGTTAATGTAATATA+AGG | - | chr4.3:20461849-20461868 | None:intergenic | 25.0% |
! | ATATTGACATGAAACTTTGA+TGG | + | chr4.3:20461609-20461628 | MS.gene42383:intron | 25.0% |
! | ATTGAAATCATCAGCAAATA+TGG | - | chr4.3:20462390-20462409 | None:intergenic | 25.0% |
! | GAAGATATTAGCTAAACTTT+AGG | - | chr4.3:20461869-20461888 | None:intergenic | 25.0% |
! | GTCTATAGTATTGTCTTTAA+AGG | + | chr4.3:20461535-20461554 | MS.gene42383:CDS | 25.0% |
! | TATCATTCAAAATTATCCCT+CGG | + | chr4.3:20462160-20462179 | MS.gene42383:intron | 25.0% |
! | TATTGACATGAAACTTTGAT+GGG | + | chr4.3:20461610-20461629 | MS.gene42383:intron | 25.0% |
! | TCTTATAAGAATGAGTTTGA+AGG | + | chr4.3:20462696-20462715 | MS.gene42383:CDS | 25.0% |
! | TTTGAACGTGAAAGATTAAA+TGG | + | chr4.3:20462315-20462334 | MS.gene42383:CDS | 25.0% |
!! | AGTTCATAACTTTTGTGAAT+TGG | + | chr4.3:20462112-20462131 | MS.gene42383:intron | 25.0% |
!! | ATTTTCTTGTCTAATGTTAG+TGG | + | chr4.3:20462488-20462507 | MS.gene42383:CDS | 25.0% |
!! | TATTGTTATGTCACTTATGT+CGG | + | chr4.3:20462926-20462945 | MS.gene42383:CDS | 25.0% |
!!! | TTGTTTTATTCGGTCTTTTA+TGG | + | chr4.3:20462264-20462283 | MS.gene42383:intron | 25.0% |
AACATCTATATGTAAAGGAG+TGG | - | chr4.3:20462994-20463013 | None:intergenic | 30.0% | |
AATTCAAGGGATTATGATGT+TGG | + | chr4.3:20462578-20462597 | MS.gene42383:CDS | 30.0% | |
ACATACAAGAAAAAACATGC+TGG | + | chr4.3:20461653-20461672 | MS.gene42383:CDS | 30.0% | |
AGATATGAGTTACTCAAAGT+GGG | + | chr4.3:20462818-20462837 | MS.gene42383:CDS | 30.0% | |
ATCCAAATCATTAAAGACAG+TGG | - | chr4.3:20461792-20461811 | None:intergenic | 30.0% | |
ATGATTCCCATTAGAAAATC+AGG | - | chr4.3:20462546-20462565 | None:intergenic | 30.0% | |
GAAAGATTAAATGGACACTA+TGG | + | chr4.3:20462324-20462343 | MS.gene42383:CDS | 30.0% | |
GAAAGGCAATATAGAACATA+GGG | - | chr4.3:20462656-20462675 | None:intergenic | 30.0% | |
GACATAAGTGACATAACAAT+AGG | - | chr4.3:20462927-20462946 | None:intergenic | 30.0% | |
GATATCAATTGCTTGTTCTA+TGG | - | chr4.3:20461453-20461472 | None:intergenic | 30.0% | |
TAAAAGTAATGGCTCAATTC+AGG | + | chr4.3:20461811-20461830 | MS.gene42383:CDS | 30.0% | |
TAGATATGAGTTACTCAAAG+TGG | + | chr4.3:20462817-20462836 | MS.gene42383:CDS | 30.0% | |
TGAAAGGCAATATAGAACAT+AGG | - | chr4.3:20462657-20462676 | None:intergenic | 30.0% | |
TGATTCCCATTAGAAAATCA+GGG | - | chr4.3:20462545-20462564 | None:intergenic | 30.0% | |
TTTCTAATGGGAATCATAAC+TGG | + | chr4.3:20462549-20462568 | MS.gene42383:CDS | 30.0% | |
TTTGAAAGAGATGAAATTGG+TGG | + | chr4.3:20462726-20462745 | MS.gene42383:CDS | 30.0% | |
! | AACATAGGGTATTTCCAAAA+TGG | - | chr4.3:20462642-20462661 | None:intergenic | 30.0% |
! | ATGATCTTCCTAATCCATTT+TGG | + | chr4.3:20462625-20462644 | MS.gene42383:CDS | 30.0% |
! | ATTGTCCCTGATTTTCTAAT+GGG | + | chr4.3:20462537-20462556 | MS.gene42383:CDS | 30.0% |
!! | AAATGGATTAGGAAGATCAT+TGG | - | chr4.3:20462625-20462644 | None:intergenic | 30.0% |
!! | AATGGATTAGGAAGATCATT+GGG | - | chr4.3:20462624-20462643 | None:intergenic | 30.0% |
!!! | CTAATTTTGCATGTCACTTT+TGG | + | chr4.3:20461888-20461907 | MS.gene42383:intron | 30.0% |
AGCCACTGTCTTTAATGATT+TGG | + | chr4.3:20461787-20461806 | MS.gene42383:CDS | 35.0% | |
ATGAAGAATATGAGCTCACA+AGG | - | chr4.3:20461475-20461494 | None:intergenic | 35.0% | |
ATTCTCGAAGTTGTAAGCAT+CGG | + | chr4.3:20462082-20462101 | MS.gene42383:intron | 35.0% | |
CATGTTCACAAAAGATCTTC+TGG | - | chr4.3:20461705-20461724 | None:intergenic | 35.0% | |
CTGATGATTTCAATCATTCC+TGG | + | chr4.3:20462396-20462415 | MS.gene42383:CDS | 35.0% | |
GGATCACTCAATTACATTAG+TGG | + | chr4.3:20462765-20462784 | MS.gene42383:CDS | 35.0% | |
GGTGTAACTGCATATGTAAT+TGG | + | chr4.3:20462345-20462364 | MS.gene42383:CDS | 35.0% | |
TGTTCTATATTGCCTTTCAC+AGG | + | chr4.3:20462658-20462677 | MS.gene42383:CDS | 35.0% | |
TTCCTAACTTTCATGACCAT+TGG | + | chr4.3:20461957-20461976 | MS.gene42383:CDS | 35.0% | |
TTCGTGATCTTGGCTATTAT+TGG | + | chr4.3:20461726-20461745 | MS.gene42383:CDS | 35.0% | |
! | CATTGTCCCTGATTTTCTAA+TGG | + | chr4.3:20462536-20462555 | MS.gene42383:CDS | 35.0% |
! | GGGTATTTCCAAAATGGATT+AGG | - | chr4.3:20462636-20462655 | None:intergenic | 35.0% |
! | TTGAAAAGCATACCTGTGAA+AGG | - | chr4.3:20462673-20462692 | None:intergenic | 35.0% |
! | TTTCACAGGTATGCTTTTCA+AGG | + | chr4.3:20462672-20462691 | MS.gene42383:CDS | 35.0% |
!! | GAAACTTTGATGGGTGTTTT+AGG | + | chr4.3:20461619-20461638 | MS.gene42383:intron | 35.0% |
!! | GTTGATCTTGGAGTATTGTT+GGG | + | chr4.3:20462840-20462859 | MS.gene42383:CDS | 35.0% |
!! | TCAAATCCTTTTTGAAGACC+TGG | - | chr4.3:20462441-20462460 | None:intergenic | 35.0% |
!!! | CACTTTTGGTTTTCCTTTTC+AGG | + | chr4.3:20461902-20461921 | MS.gene42383:intron | 35.0% |
AGTGAACCTCTATCCTGAAA+AGG | - | chr4.3:20461918-20461937 | None:intergenic | 40.0% | |
ATAAGAAGGGAATCCACCAA+TGG | - | chr4.3:20461976-20461995 | None:intergenic | 40.0% | |
ATATGTAAAGGAGTGGCACT+AGG | - | chr4.3:20462987-20463006 | None:intergenic | 40.0% | |
CACCAATGGTCATGAAAGTT+AGG | - | chr4.3:20461962-20461981 | None:intergenic | 40.0% | |
CCAACGCAATATATATGCCA+AGG | - | chr4.3:20461757-20461776 | None:intergenic | 40.0% | |
CCTTGGCATATATATTGCGT+TGG | + | chr4.3:20461754-20461773 | MS.gene42383:CDS | 40.0% | |
CTAACTTTCATGACCATTGG+TGG | + | chr4.3:20461960-20461979 | MS.gene42383:CDS | 40.0% | |
GAAAGAGATGAAATTGGTGG+TGG | + | chr4.3:20462729-20462748 | MS.gene42383:CDS | 40.0% | |
GTGAACATGTTTCGTGATCT+TGG | + | chr4.3:20461716-20461735 | MS.gene42383:CDS | 40.0% | |
TAGGCAAACAAGACAAGTCT+TGG | + | chr4.3:20462956-20462975 | MS.gene42383:CDS | 40.0% | |
TCATGTCCTCCACATAAGAA+GGG | - | chr4.3:20461989-20462008 | None:intergenic | 40.0% | |
TTCATGTCCTCCACATAAGA+AGG | - | chr4.3:20461990-20462009 | None:intergenic | 40.0% | |
TTCTTATGTGGAGGACATGA+AGG | + | chr4.3:20461989-20462008 | MS.gene42383:CDS | 40.0% | |
! | ATAACTGGTGCTGGAATTCA+AGG | + | chr4.3:20462564-20462583 | MS.gene42383:CDS | 40.0% |
! | TAACTGGTGCTGGAATTCAA+GGG | + | chr4.3:20462565-20462584 | MS.gene42383:CDS | 40.0% |
!! | AAGACTTGTCTTGTTTGCCT+AGG | - | chr4.3:20462957-20462976 | None:intergenic | 40.0% |
!! | AATCCTTTTTGAAGACCTGG+AGG | - | chr4.3:20462438-20462457 | None:intergenic | 40.0% |
!! | ATCCTTTTTGAAGACCTGGA+GGG | - | chr4.3:20462437-20462456 | None:intergenic | 40.0% |
!! | GGTTGATCTTGGAGTATTGT+TGG | + | chr4.3:20462839-20462858 | MS.gene42383:CDS | 40.0% |
!! | GGTTTTCCTTTTCAGGATAG+AGG | + | chr4.3:20461909-20461928 | MS.gene42383:intron | 40.0% |
!! | TACTCAAAGTGGGTTGATCT+TGG | + | chr4.3:20462828-20462847 | MS.gene42383:CDS | 40.0% |
!! | TGAGAACTAAGCACTGATTG+AGG | - | chr4.3:20461682-20461701 | None:intergenic | 40.0% |
ACCTGGAGGGTAATATGCTA+TGG | - | chr4.3:20462424-20462443 | None:intergenic | 45.0% | |
ATGGGAATCATAACTGGTGC+TGG | + | chr4.3:20462555-20462574 | MS.gene42383:CDS | 45.0% | |
CAAGGGATTATGATGTTGGC+AGG | + | chr4.3:20462582-20462601 | MS.gene42383:CDS | 45.0% | |
TAATGACGAACGTTCACCGA+GGG | - | chr4.3:20462179-20462198 | None:intergenic | 45.0% | |
TACCCTCCAGGTCTTCAAAA+AGG | + | chr4.3:20462432-20462451 | MS.gene42383:CDS | 45.0% | |
TGGATTCCCTTCTTATGTGG+AGG | + | chr4.3:20461980-20461999 | MS.gene42383:CDS | 45.0% | |
! | GAGATGGATTTAGCAGAGAC+TGG | + | chr4.3:20461419-20461438 | MS.gene42383:CDS | 45.0% |
! | GGCTATTATTGGTTACGCCT+TGG | + | chr4.3:20461737-20461756 | MS.gene42383:CDS | 45.0% |
!! | AGAGATGAAATTGGTGGTGG+TGG | + | chr4.3:20462732-20462751 | MS.gene42383:CDS | 45.0% |
!! | TGGTGGATTCCCTTCTTATG+TGG | + | chr4.3:20461977-20461996 | MS.gene42383:CDS | 45.0% |
CTAATGACGAACGTTCACCG+AGG | - | chr4.3:20462180-20462199 | None:intergenic | 50.0% | |
GCCATAGCATATTACCCTCC+AGG | + | chr4.3:20462420-20462439 | MS.gene42383:CDS | 50.0% | |
GGGATTATGATGTTGGCAGG+TGG | + | chr4.3:20462585-20462604 | MS.gene42383:CDS | 50.0% | |
GGGTAATATGCTATGGCTCC+AGG | - | chr4.3:20462417-20462436 | None:intergenic | 50.0% | |
! | CACTTATGTCGGTGTCTCCT+AGG | + | chr4.3:20462937-20462956 | MS.gene42383:CDS | 50.0% |
!! | GATGAAATTGGTGGTGGTGG+TGG | + | chr4.3:20462735-20462754 | MS.gene42383:CDS | 50.0% |
!! | GAAATTGGTGGTGGTGGTGG+TGG | + | chr4.3:20462738-20462757 | MS.gene42383:CDS | 55.0% |
!! | ATTGGTGGTGGTGGTGGTGG+TGG | + | chr4.3:20462741-20462760 | MS.gene42383:CDS | 60.0% |
!! | GGTGGTGGTGGTGGTGGTGG+TGG | + | chr4.3:20462744-20462763 | MS.gene42383:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 20461413 | 20463019 | 20461413 | ID=MS.gene42383 |
chr4.3 | mRNA | 20461413 | 20463019 | 20461413 | ID=MS.gene42383.t1;Parent=MS.gene42383 |
chr4.3 | exon | 20461413 | 20461556 | 20461413 | ID=MS.gene42383.t1.exon1;Parent=MS.gene42383.t1 |
chr4.3 | CDS | 20461413 | 20461556 | 20461413 | ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1 |
chr4.3 | exon | 20461641 | 20461832 | 20461641 | ID=MS.gene42383.t1.exon2;Parent=MS.gene42383.t1 |
chr4.3 | CDS | 20461641 | 20461832 | 20461641 | ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1 |
chr4.3 | exon | 20461924 | 20462010 | 20461924 | ID=MS.gene42383.t1.exon3;Parent=MS.gene42383.t1 |
chr4.3 | CDS | 20461924 | 20462010 | 20461924 | ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1 |
chr4.3 | exon | 20462312 | 20463019 | 20462312 | ID=MS.gene42383.t1.exon4;Parent=MS.gene42383.t1 |
chr4.3 | CDS | 20462312 | 20463019 | 20462312 | ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1 |
Gene Sequence |
Protein sequence |