AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42383


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42383.t1 MTR_4g094010 95.213 376 12 1 1 376 296 665 0.0 738
MS.gene42383.t1 MTR_4g094050 66.223 376 114 4 1 372 319 685 1.51e-173 500
MS.gene42383.t1 MTR_4g094060 64.456 377 125 3 1 376 319 687 8.20e-170 490
MS.gene42383.t1 MTR_4g054020 61.789 369 126 4 2 366 217 574 1.52e-161 465
MS.gene42383.t1 MTR_4g093845 51.136 352 151 7 1 346 301 637 6.34e-116 351
MS.gene42383.t1 MTR_4g094090 50.562 356 159 7 1 351 273 616 1.94e-114 347
MS.gene42383.t1 MTR_6g066240 47.354 359 178 2 12 370 331 678 1.18e-105 326
MS.gene42383.t1 MTR_4g076970 39.167 360 205 4 9 367 314 660 2.61e-84 270
MS.gene42383.t1 MTR_4g076900 40.449 356 200 3 12 367 295 638 1.64e-83 267
MS.gene42383.t1 MTR_4g076940 40.449 356 200 4 12 367 226 569 6.68e-79 254
MS.gene42383.t1 MTR_4g076940 40.169 356 201 3 12 367 319 662 8.20e-78 253
MS.gene42383.t1 MTR_4g076940 40.449 356 200 4 12 367 359 702 1.79e-77 253
MS.gene42383.t1 MTR_2g095390 32.836 335 205 4 17 345 392 712 6.08e-48 173
MS.gene42383.t1 MTR_2g078080 28.975 283 183 5 62 338 334 604 6.77e-29 118
MS.gene42383.t1 MTR_4g094020 46.575 146 49 5 1 145 229 346 8.14e-27 109
MS.gene42383.t1 MTR_4g116540 24.189 339 234 7 13 338 306 634 9.33e-27 112
MS.gene42383.t1 MTR_3g096410 25.899 278 196 4 62 339 367 634 1.64e-26 111
MS.gene42383.t1 MTR_8g093840 25.899 278 196 4 62 339 367 634 5.47e-26 110
MS.gene42383.t1 MTR_5g030910 25.088 283 198 5 61 343 455 723 7.70e-22 97.8
MS.gene42383.t1 MTR_1g115790 26.512 215 156 2 61 275 446 658 1.68e-20 93.6
MS.gene42383.t1 MTR_1g108340 26.444 329 207 10 56 374 388 691 4.52e-20 92.4
MS.gene42383.t1 MTR_1g108340 26.444 329 207 10 56 374 388 691 4.52e-20 92.4
MS.gene42383.t1 MTR_1g099570 24.400 250 181 6 97 345 367 609 8.20e-19 88.6
MS.gene42383.t1 MTR_4g094080 44.762 105 47 3 1 98 61 161 8.49e-18 83.2
MS.gene42383.t1 MTR_7g100120 24.074 216 162 2 61 276 441 654 2.45e-17 84.3
MS.gene42383.t1 MTR_8g107450 23.782 349 233 11 6 339 479 809 3.13e-17 84.0
MS.gene42383.t1 MTR_1g054960 25.000 288 187 8 5 278 275 547 2.46e-14 74.7
MS.gene42383.t1 MTR_5g070320 23.913 276 191 7 59 334 223 479 5.31e-12 67.8
MS.gene42383.t1 MTR_5g070320 23.913 276 191 7 59 334 319 575 8.14e-12 67.4
MS.gene42383.t1 MTR_5g070320 23.913 276 191 7 59 334 510 766 8.17e-12 67.4
MS.gene42383.t1 MTR_7g106880 22.997 287 199 7 2 276 262 538 2.20e-11 65.9
MS.gene42383.t1 MTR_7g106880 22.997 287 199 7 2 276 413 689 2.71e-11 65.5
MS.gene42383.t1 MTR_1g054935 23.985 271 182 7 19 278 283 540 4.18e-11 64.7
MS.gene42383.t1 MTR_1g054935 23.308 266 186 6 21 278 447 702 8.51e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42383.t1 AT1G17840 49.025 359 171 2 12 370 334 680 1.86e-99 310
MS.gene42383.t1 AT3G21090 42.363 347 188 3 21 367 320 654 6.73e-89 282
MS.gene42383.t1 AT1G51460 38.889 342 190 4 26 367 327 649 1.85e-78 254
MS.gene42383.t1 AT1G51500 40.346 347 196 4 21 367 320 655 1.08e-76 250
MS.gene42383.t1 AT2G28070 32.407 324 204 3 17 339 399 708 6.55e-51 181
MS.gene42383.t1 AT2G28070 32.407 324 204 3 17 339 399 708 6.55e-51 181
MS.gene42383.t1 AT5G19410 24.535 269 192 7 76 343 372 630 5.46e-28 115
MS.gene42383.t1 AT5G19410 24.535 269 192 7 76 343 363 621 5.53e-28 115
MS.gene42383.t1 AT2G13610 25.540 278 196 5 62 339 370 636 1.40e-25 108
MS.gene42383.t1 AT1G53270 26.882 279 174 5 62 338 331 581 4.65e-23 101
MS.gene42383.t1 AT4G25750 24.219 256 175 5 91 339 327 570 7.92e-21 94.4
MS.gene42383.t1 AT5G52860 24.096 332 233 9 13 339 265 582 1.10e-20 94.0
MS.gene42383.t1 AT2G37360 24.016 254 186 3 28 276 409 660 1.73e-19 90.9
MS.gene42383.t1 AT3G55110 24.651 215 160 2 62 276 401 613 2.01e-19 90.5
MS.gene42383.t1 AT3G55100 25.352 213 157 2 64 276 357 567 2.11e-19 90.5
MS.gene42383.t1 AT3G55100 25.352 213 157 2 64 276 357 567 2.11e-19 90.5
MS.gene42383.t1 AT5G13580 26.047 215 157 2 61 275 419 631 3.80e-19 89.7
MS.gene42383.t1 AT3G55130 23.200 250 186 3 31 276 383 630 2.61e-18 87.0
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 2.92e-18 87.0
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 2.92e-18 87.0
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 4.47e-18 86.3
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 4.47e-18 86.3
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 4.56e-18 86.3
MS.gene42383.t1 AT2G01320 26.780 295 187 11 2 281 329 609 4.69e-18 86.3
MS.gene42383.t1 AT3G55090 24.880 209 155 2 67 275 434 640 8.54e-18 85.5
MS.gene42383.t1 AT3G53510 25.758 264 180 4 22 276 388 644 3.09e-17 84.0
MS.gene42383.t1 AT3G21080 34.247 146 79 4 206 346 106 239 6.68e-16 77.4
MS.gene42383.t1 AT2G39350 23.923 209 157 2 67 275 438 644 1.05e-14 76.3
MS.gene42383.t1 AT2G29940 22.472 267 200 3 8 269 1095 1359 2.37e-11 66.2

Find 73 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATAGTATTGTCTTTAA+AGG 0.148699 4.3:+20461535 MS.gene42383:CDS
ATGATCTTCCTAATCCATTT+TGG 0.156981 4.3:+20462625 MS.gene42383:CDS
GATATCAATTGCTTGTTCTA+TGG 0.227852 4.3:-20461450 None:intergenic
TTTGAACGTGAAAGATTAAA+TGG 0.233081 4.3:+20462315 MS.gene42383:CDS
ATTGAAATCATCAGCAAATA+TGG 0.242245 4.3:-20462387 None:intergenic
AACATAGGGTATTTCCAAAA+TGG 0.259735 4.3:-20462639 None:intergenic
AGCCACTGTCTTTAATGATT+TGG 0.262428 4.3:+20461787 MS.gene42383:CDS
TTTAATTTCTTGGTTTCTTT+CGG 0.280423 4.3:-20461495 None:intergenic
TACCCTCCAGGTCTTCAAAA+AGG 0.282844 4.3:+20462432 MS.gene42383:CDS
ATGATTCCCATTAGAAAATC+AGG 0.291192 4.3:-20462543 None:intergenic
CTGATGATTTCAATCATTCC+TGG 0.299780 4.3:+20462396 MS.gene42383:CDS
CATGTTCACAAAAGATCTTC+TGG 0.312879 4.3:-20461702 None:intergenic
TTCGTGATCTTGGCTATTAT+TGG 0.317963 4.3:+20461726 MS.gene42383:CDS
TAAAAGTAATGGCTCAATTC+AGG 0.332362 4.3:+20461811 MS.gene42383:CDS
TTTCTAATGGGAATCATAAC+TGG 0.337952 4.3:+20462549 MS.gene42383:CDS
GGTGTAACTGCATATGTAAT+TGG 0.355346 4.3:+20462345 MS.gene42383:CDS
GGGTATTTCCAAAATGGATT+AGG 0.357240 4.3:-20462633 None:intergenic
AAATTTGAAAGAGATGAAAT+TGG 0.358441 4.3:+20462723 MS.gene42383:CDS
TACTCAAAGTGGGTTGATCT+TGG 0.362481 4.3:+20462828 MS.gene42383:CDS
CACCAATGGTCATGAAAGTT+AGG 0.401646 4.3:-20461959 None:intergenic
GTGAACATGTTTCGTGATCT+TGG 0.409054 4.3:+20461716 MS.gene42383:CDS
ATAACTGGTGCTGGAATTCA+AGG 0.410331 4.3:+20462564 MS.gene42383:CDS
TGGTGGATTCCCTTCTTATG+TGG 0.415254 4.3:+20461977 MS.gene42383:CDS
GGTTGATCTTGGAGTATTGT+TGG 0.424413 4.3:+20462839 MS.gene42383:CDS
GGCTATTATTGGTTACGCCT+TGG 0.429860 4.3:+20461737 MS.gene42383:CDS
GTTGATCTTGGAGTATTGTT+GGG 0.434086 4.3:+20462840 MS.gene42383:CDS
CACTTATGTCGGTGTCTCCT+AGG 0.440631 4.3:+20462937 MS.gene42383:CDS
ATGGGAATCATAACTGGTGC+TGG 0.440680 4.3:+20462555 MS.gene42383:CDS
TTCCTAACTTTCATGACCAT+TGG 0.458620 4.3:+20461957 MS.gene42383:CDS
AATGATTTGGATAAAAGTAA+TGG 0.458739 4.3:+20461800 MS.gene42383:CDS
AAATGGATTAGGAAGATCAT+TGG 0.460933 4.3:-20462622 None:intergenic
GAAAGATTAAATGGACACTA+TGG 0.460958 4.3:+20462324 MS.gene42383:CDS
GAGATGGATTTAGCAGAGAC+TGG 0.477488 4.3:+20461419 MS.gene42383:CDS
CTAACTTTCATGACCATTGG+TGG 0.478663 4.3:+20461960 MS.gene42383:CDS
TTCATGTCCTCCACATAAGA+AGG 0.479736 4.3:-20461987 None:intergenic
GATGAAATTGGTGGTGGTGG+TGG 0.481966 4.3:+20462735 MS.gene42383:CDS
GACATAAGTGACATAACAAT+AGG 0.486627 4.3:-20462924 None:intergenic
TAGGCAAACAAGACAAGTCT+TGG 0.487764 4.3:+20462956 MS.gene42383:CDS
TGTTCTATATTGCCTTTCAC+AGG 0.489236 4.3:+20462658 MS.gene42383:CDS
CAAGGGATTATGATGTTGGC+AGG 0.499670 4.3:+20462582 MS.gene42383:CDS
AAGACTTGTCTTGTTTGCCT+AGG 0.501633 4.3:-20462954 None:intergenic
AATGGATTAGGAAGATCATT+GGG 0.503000 4.3:-20462621 None:intergenic
GGATCACTCAATTACATTAG+TGG 0.505948 4.3:+20462765 MS.gene42383:CDS
TTCTTATGTGGAGGACATGA+AGG 0.508636 4.3:+20461989 MS.gene42383:CDS
GCCATAGCATATTACCCTCC+AGG 0.509466 4.3:+20462420 MS.gene42383:CDS
AATTCAAGGGATTATGATGT+TGG 0.510525 4.3:+20462578 MS.gene42383:CDS
GGGTAATATGCTATGGCTCC+AGG 0.511427 4.3:-20462414 None:intergenic
TGAAAGGCAATATAGAACAT+AGG 0.514456 4.3:-20462654 None:intergenic
AGAGATGAAATTGGTGGTGG+TGG 0.529076 4.3:+20462732 MS.gene42383:CDS
TGGATTCCCTTCTTATGTGG+AGG 0.531042 4.3:+20461980 MS.gene42383:CDS
TCTTATAAGAATGAGTTTGA+AGG 0.538328 4.3:+20462696 MS.gene42383:CDS
TATACAACATCTATATGTAA+AGG 0.538931 4.3:-20462996 None:intergenic
ACCTGGAGGGTAATATGCTA+TGG 0.542119 4.3:-20462421 None:intergenic
TATTGTTATGTCACTTATGT+CGG 0.544402 4.3:+20462926 MS.gene42383:CDS
GAAAGGCAATATAGAACATA+GGG 0.546042 4.3:-20462653 None:intergenic
TAGATATGAGTTACTCAAAG+TGG 0.553373 4.3:+20462817 MS.gene42383:CDS
CCTTGGCATATATATTGCGT+TGG 0.554763 4.3:+20461754 MS.gene42383:CDS
ATCCAAATCATTAAAGACAG+TGG 0.564200 4.3:-20461789 None:intergenic
ATATGTAAAGGAGTGGCACT+AGG 0.573329 4.3:-20462984 None:intergenic
TTTGAAAGAGATGAAATTGG+TGG 0.584768 4.3:+20462726 MS.gene42383:CDS
TGATTCCCATTAGAAAATCA+GGG 0.592259 4.3:-20462542 None:intergenic
GAAAGAGATGAAATTGGTGG+TGG 0.595546 4.3:+20462729 MS.gene42383:CDS
TTGAAAAGCATACCTGTGAA+AGG 0.601275 4.3:-20462670 None:intergenic
TCAATGTTAGGATATTGAGA+TGG 0.603713 4.3:+20461403 None:intergenic
AGATATGAGTTACTCAAAGT+GGG 0.605112 4.3:+20462818 MS.gene42383:CDS
AACATCTATATGTAAAGGAG+TGG 0.624574 4.3:-20462991 None:intergenic
CCAACGCAATATATATGCCA+AGG 0.625218 4.3:-20461754 None:intergenic
ATGAAGAATATGAGCTCACA+AGG 0.626092 4.3:-20461472 None:intergenic
GGGATTATGATGTTGGCAGG+TGG 0.630683 4.3:+20462585 MS.gene42383:CDS
TGAGAACTAAGCACTGATTG+AGG 0.631489 4.3:-20461679 None:intergenic
TCATGTCCTCCACATAAGAA+GGG 0.633774 4.3:-20461986 None:intergenic
ATAAGAAGGGAATCCACCAA+TGG 0.674842 4.3:-20461973 None:intergenic
TAACTGGTGCTGGAATTCAA+GGG 0.675155 4.3:+20462565 MS.gene42383:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTTCATTTTTAATTTCT+TGG - chr4.3:20461508-20461527 None:intergenic 15.0%
!!! CACTAAATTATTGTTTTATT+CGG + chr4.3:20462254-20462273 MS.gene42383:intron 15.0%
!!! CATATGTTATTAATTTGTAT+AGG + chr4.3:20462290-20462309 MS.gene42383:intron 15.0%
!! AAATTTGAAAGAGATGAAAT+TGG + chr4.3:20462723-20462742 MS.gene42383:CDS 20.0%
!! GCAAATATATATTGAATGAA+TGG + chr4.3:20462051-20462070 MS.gene42383:intron 20.0%
!! TATACAACATCTATATGTAA+AGG - chr4.3:20462999-20463018 None:intergenic 20.0%
!!! AATGATTTGGATAAAAGTAA+TGG + chr4.3:20461800-20461819 MS.gene42383:CDS 20.0%
!!! TAAATTTAGCTCAAATTTAG+AGG - chr4.3:20461564-20461583 None:intergenic 20.0%
!!! TTTAATTTCTTGGTTTCTTT+CGG - chr4.3:20461498-20461517 None:intergenic 20.0%
! AGGTCAGTTAATGTAATATA+AGG - chr4.3:20461849-20461868 None:intergenic 25.0%
! ATATTGACATGAAACTTTGA+TGG + chr4.3:20461609-20461628 MS.gene42383:intron 25.0%
! ATTGAAATCATCAGCAAATA+TGG - chr4.3:20462390-20462409 None:intergenic 25.0%
! GAAGATATTAGCTAAACTTT+AGG - chr4.3:20461869-20461888 None:intergenic 25.0%
! GTCTATAGTATTGTCTTTAA+AGG + chr4.3:20461535-20461554 MS.gene42383:CDS 25.0%
! TATCATTCAAAATTATCCCT+CGG + chr4.3:20462160-20462179 MS.gene42383:intron 25.0%
! TATTGACATGAAACTTTGAT+GGG + chr4.3:20461610-20461629 MS.gene42383:intron 25.0%
! TCTTATAAGAATGAGTTTGA+AGG + chr4.3:20462696-20462715 MS.gene42383:CDS 25.0%
! TTTGAACGTGAAAGATTAAA+TGG + chr4.3:20462315-20462334 MS.gene42383:CDS 25.0%
!! AGTTCATAACTTTTGTGAAT+TGG + chr4.3:20462112-20462131 MS.gene42383:intron 25.0%
!! ATTTTCTTGTCTAATGTTAG+TGG + chr4.3:20462488-20462507 MS.gene42383:CDS 25.0%
!! TATTGTTATGTCACTTATGT+CGG + chr4.3:20462926-20462945 MS.gene42383:CDS 25.0%
!!! TTGTTTTATTCGGTCTTTTA+TGG + chr4.3:20462264-20462283 MS.gene42383:intron 25.0%
AACATCTATATGTAAAGGAG+TGG - chr4.3:20462994-20463013 None:intergenic 30.0%
AATTCAAGGGATTATGATGT+TGG + chr4.3:20462578-20462597 MS.gene42383:CDS 30.0%
ACATACAAGAAAAAACATGC+TGG + chr4.3:20461653-20461672 MS.gene42383:CDS 30.0%
AGATATGAGTTACTCAAAGT+GGG + chr4.3:20462818-20462837 MS.gene42383:CDS 30.0%
ATCCAAATCATTAAAGACAG+TGG - chr4.3:20461792-20461811 None:intergenic 30.0%
ATGATTCCCATTAGAAAATC+AGG - chr4.3:20462546-20462565 None:intergenic 30.0%
GAAAGATTAAATGGACACTA+TGG + chr4.3:20462324-20462343 MS.gene42383:CDS 30.0%
GAAAGGCAATATAGAACATA+GGG - chr4.3:20462656-20462675 None:intergenic 30.0%
GACATAAGTGACATAACAAT+AGG - chr4.3:20462927-20462946 None:intergenic 30.0%
GATATCAATTGCTTGTTCTA+TGG - chr4.3:20461453-20461472 None:intergenic 30.0%
TAAAAGTAATGGCTCAATTC+AGG + chr4.3:20461811-20461830 MS.gene42383:CDS 30.0%
TAGATATGAGTTACTCAAAG+TGG + chr4.3:20462817-20462836 MS.gene42383:CDS 30.0%
TGAAAGGCAATATAGAACAT+AGG - chr4.3:20462657-20462676 None:intergenic 30.0%
TGATTCCCATTAGAAAATCA+GGG - chr4.3:20462545-20462564 None:intergenic 30.0%
TTTCTAATGGGAATCATAAC+TGG + chr4.3:20462549-20462568 MS.gene42383:CDS 30.0%
TTTGAAAGAGATGAAATTGG+TGG + chr4.3:20462726-20462745 MS.gene42383:CDS 30.0%
! AACATAGGGTATTTCCAAAA+TGG - chr4.3:20462642-20462661 None:intergenic 30.0%
! ATGATCTTCCTAATCCATTT+TGG + chr4.3:20462625-20462644 MS.gene42383:CDS 30.0%
! ATTGTCCCTGATTTTCTAAT+GGG + chr4.3:20462537-20462556 MS.gene42383:CDS 30.0%
!! AAATGGATTAGGAAGATCAT+TGG - chr4.3:20462625-20462644 None:intergenic 30.0%
!! AATGGATTAGGAAGATCATT+GGG - chr4.3:20462624-20462643 None:intergenic 30.0%
!!! CTAATTTTGCATGTCACTTT+TGG + chr4.3:20461888-20461907 MS.gene42383:intron 30.0%
AGCCACTGTCTTTAATGATT+TGG + chr4.3:20461787-20461806 MS.gene42383:CDS 35.0%
ATGAAGAATATGAGCTCACA+AGG - chr4.3:20461475-20461494 None:intergenic 35.0%
ATTCTCGAAGTTGTAAGCAT+CGG + chr4.3:20462082-20462101 MS.gene42383:intron 35.0%
CATGTTCACAAAAGATCTTC+TGG - chr4.3:20461705-20461724 None:intergenic 35.0%
CTGATGATTTCAATCATTCC+TGG + chr4.3:20462396-20462415 MS.gene42383:CDS 35.0%
GGATCACTCAATTACATTAG+TGG + chr4.3:20462765-20462784 MS.gene42383:CDS 35.0%
GGTGTAACTGCATATGTAAT+TGG + chr4.3:20462345-20462364 MS.gene42383:CDS 35.0%
TGTTCTATATTGCCTTTCAC+AGG + chr4.3:20462658-20462677 MS.gene42383:CDS 35.0%
TTCCTAACTTTCATGACCAT+TGG + chr4.3:20461957-20461976 MS.gene42383:CDS 35.0%
TTCGTGATCTTGGCTATTAT+TGG + chr4.3:20461726-20461745 MS.gene42383:CDS 35.0%
! CATTGTCCCTGATTTTCTAA+TGG + chr4.3:20462536-20462555 MS.gene42383:CDS 35.0%
! GGGTATTTCCAAAATGGATT+AGG - chr4.3:20462636-20462655 None:intergenic 35.0%
! TTGAAAAGCATACCTGTGAA+AGG - chr4.3:20462673-20462692 None:intergenic 35.0%
! TTTCACAGGTATGCTTTTCA+AGG + chr4.3:20462672-20462691 MS.gene42383:CDS 35.0%
!! GAAACTTTGATGGGTGTTTT+AGG + chr4.3:20461619-20461638 MS.gene42383:intron 35.0%
!! GTTGATCTTGGAGTATTGTT+GGG + chr4.3:20462840-20462859 MS.gene42383:CDS 35.0%
!! TCAAATCCTTTTTGAAGACC+TGG - chr4.3:20462441-20462460 None:intergenic 35.0%
!!! CACTTTTGGTTTTCCTTTTC+AGG + chr4.3:20461902-20461921 MS.gene42383:intron 35.0%
AGTGAACCTCTATCCTGAAA+AGG - chr4.3:20461918-20461937 None:intergenic 40.0%
ATAAGAAGGGAATCCACCAA+TGG - chr4.3:20461976-20461995 None:intergenic 40.0%
ATATGTAAAGGAGTGGCACT+AGG - chr4.3:20462987-20463006 None:intergenic 40.0%
CACCAATGGTCATGAAAGTT+AGG - chr4.3:20461962-20461981 None:intergenic 40.0%
CCAACGCAATATATATGCCA+AGG - chr4.3:20461757-20461776 None:intergenic 40.0%
CCTTGGCATATATATTGCGT+TGG + chr4.3:20461754-20461773 MS.gene42383:CDS 40.0%
CTAACTTTCATGACCATTGG+TGG + chr4.3:20461960-20461979 MS.gene42383:CDS 40.0%
GAAAGAGATGAAATTGGTGG+TGG + chr4.3:20462729-20462748 MS.gene42383:CDS 40.0%
GTGAACATGTTTCGTGATCT+TGG + chr4.3:20461716-20461735 MS.gene42383:CDS 40.0%
TAGGCAAACAAGACAAGTCT+TGG + chr4.3:20462956-20462975 MS.gene42383:CDS 40.0%
TCATGTCCTCCACATAAGAA+GGG - chr4.3:20461989-20462008 None:intergenic 40.0%
TTCATGTCCTCCACATAAGA+AGG - chr4.3:20461990-20462009 None:intergenic 40.0%
TTCTTATGTGGAGGACATGA+AGG + chr4.3:20461989-20462008 MS.gene42383:CDS 40.0%
! ATAACTGGTGCTGGAATTCA+AGG + chr4.3:20462564-20462583 MS.gene42383:CDS 40.0%
! TAACTGGTGCTGGAATTCAA+GGG + chr4.3:20462565-20462584 MS.gene42383:CDS 40.0%
!! AAGACTTGTCTTGTTTGCCT+AGG - chr4.3:20462957-20462976 None:intergenic 40.0%
!! AATCCTTTTTGAAGACCTGG+AGG - chr4.3:20462438-20462457 None:intergenic 40.0%
!! ATCCTTTTTGAAGACCTGGA+GGG - chr4.3:20462437-20462456 None:intergenic 40.0%
!! GGTTGATCTTGGAGTATTGT+TGG + chr4.3:20462839-20462858 MS.gene42383:CDS 40.0%
!! GGTTTTCCTTTTCAGGATAG+AGG + chr4.3:20461909-20461928 MS.gene42383:intron 40.0%
!! TACTCAAAGTGGGTTGATCT+TGG + chr4.3:20462828-20462847 MS.gene42383:CDS 40.0%
!! TGAGAACTAAGCACTGATTG+AGG - chr4.3:20461682-20461701 None:intergenic 40.0%
ACCTGGAGGGTAATATGCTA+TGG - chr4.3:20462424-20462443 None:intergenic 45.0%
ATGGGAATCATAACTGGTGC+TGG + chr4.3:20462555-20462574 MS.gene42383:CDS 45.0%
CAAGGGATTATGATGTTGGC+AGG + chr4.3:20462582-20462601 MS.gene42383:CDS 45.0%
TAATGACGAACGTTCACCGA+GGG - chr4.3:20462179-20462198 None:intergenic 45.0%
TACCCTCCAGGTCTTCAAAA+AGG + chr4.3:20462432-20462451 MS.gene42383:CDS 45.0%
TGGATTCCCTTCTTATGTGG+AGG + chr4.3:20461980-20461999 MS.gene42383:CDS 45.0%
! GAGATGGATTTAGCAGAGAC+TGG + chr4.3:20461419-20461438 MS.gene42383:CDS 45.0%
! GGCTATTATTGGTTACGCCT+TGG + chr4.3:20461737-20461756 MS.gene42383:CDS 45.0%
!! AGAGATGAAATTGGTGGTGG+TGG + chr4.3:20462732-20462751 MS.gene42383:CDS 45.0%
!! TGGTGGATTCCCTTCTTATG+TGG + chr4.3:20461977-20461996 MS.gene42383:CDS 45.0%
CTAATGACGAACGTTCACCG+AGG - chr4.3:20462180-20462199 None:intergenic 50.0%
GCCATAGCATATTACCCTCC+AGG + chr4.3:20462420-20462439 MS.gene42383:CDS 50.0%
GGGATTATGATGTTGGCAGG+TGG + chr4.3:20462585-20462604 MS.gene42383:CDS 50.0%
GGGTAATATGCTATGGCTCC+AGG - chr4.3:20462417-20462436 None:intergenic 50.0%
! CACTTATGTCGGTGTCTCCT+AGG + chr4.3:20462937-20462956 MS.gene42383:CDS 50.0%
!! GATGAAATTGGTGGTGGTGG+TGG + chr4.3:20462735-20462754 MS.gene42383:CDS 50.0%
!! GAAATTGGTGGTGGTGGTGG+TGG + chr4.3:20462738-20462757 MS.gene42383:CDS 55.0%
!! ATTGGTGGTGGTGGTGGTGG+TGG + chr4.3:20462741-20462760 MS.gene42383:CDS 60.0%
!! GGTGGTGGTGGTGGTGGTGG+TGG + chr4.3:20462744-20462763 MS.gene42383:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 20461413 20463019 20461413 ID=MS.gene42383
chr4.3 mRNA 20461413 20463019 20461413 ID=MS.gene42383.t1;Parent=MS.gene42383
chr4.3 exon 20461413 20461556 20461413 ID=MS.gene42383.t1.exon1;Parent=MS.gene42383.t1
chr4.3 CDS 20461413 20461556 20461413 ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1
chr4.3 exon 20461641 20461832 20461641 ID=MS.gene42383.t1.exon2;Parent=MS.gene42383.t1
chr4.3 CDS 20461641 20461832 20461641 ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1
chr4.3 exon 20461924 20462010 20461924 ID=MS.gene42383.t1.exon3;Parent=MS.gene42383.t1
chr4.3 CDS 20461924 20462010 20461924 ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1
chr4.3 exon 20462312 20463019 20462312 ID=MS.gene42383.t1.exon4;Parent=MS.gene42383.t1
chr4.3 CDS 20462312 20463019 20462312 ID=cds.MS.gene42383.t1;Parent=MS.gene42383.t1
Gene Sequence

>MS.gene42383

GATATTGAGATGGATTTAGCAGAGACTGGAACAATTTCCATAGAACAAGCAATTGATATCCTTGTGAGCTCATATTCTTCATCCGAAAGAAACCAAGAAATTAAAAATGAAGTATCAATATTGTCTATAGTATTGTCTTTAAAGGTATCCTCTAAATTTGAGCTAAATTTAATTATTAGTTGTTATAGTAAAAAAAATATTGACATGAAACTTTGATGGGTGTTTTAGGATAATAATTCAACATACAAGAAAAAACATGCTGGCTTCCTCAATCAGTGCTTAGTTCTCACCAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTATTGGTTACGCCTTGGCATATATATTGCGTTGGCTATAAGTTTAGCCACTGTCTTTAATGATTTGGATAAAAGTAATGGCTCAATTCAGGTAATTAACAATACCTTATATTACATTAACTGACCTAAAGTTTAGCTAATATCTTCTAATTTTGCATGTCACTTTTGGTTTTCCTTTTCAGGATAGAGGTTCACTTCTTATGTTTGTGTTTTCATTCCTAACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAGGACATGAAGGTATAGTTCAAACTTTCAAACTATTTTTATGAAAAGTTTTGCAAATATATATTGAATGAATGGTCAAACTGATTCTCGAAGTTGTAAGCATCGGTCAAAATAGTTCATAACTTTTGTGAATTGGTAAATACATTTTCAAAAATGAAAAATATCATTCAAAATTATCCCTCGGTGAACGTTCGTCATTAGAGTCTTACAATTTTGATTAGCAGTTTCTATATTAACTTGATATGTATCTGTAGTCACTAAATTATTGTTTTATTCGGTCTTTTATGGTATCATATGTTATTAATTTGTATAGGTATTTGAACGTGAAAGATTAAATGGACACTATGGTGTAACTGCATATGTAATTGGAAACACACTTTCAGCTATTCCATATTTGCTGATGATTTCAATCATTCCTGGAGCCATAGCATATTACCCTCCAGGTCTTCAAAAAGGATTTGAGCACTTCATATATTTTATCTGTGCTCTATTTTCTTGTCTAATGTTAGTGGAGAGTCTTATGATGATAGTTGCTAGCATTGTCCCTGATTTTCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGGATTATGATGTTGGCAGGTGGATTCTTTAGATTGCCCAATGATCTTCCTAATCCATTTTGGAAATACCCTATGTTCTATATTGCCTTTCACAGGTATGCTTTTCAAGGATCTTATAAGAATGAGTTTGAAGGACTAAAATTTGAAAGAGATGAAATTGGTGGTGGTGGTGGTGGTGGTGGATCACTCAATTACATTAGTGGTGAAGAGATTCTAAGAAATAAATTTCAAGTAGATATGAGTTACTCAAAGTGGGTTGATCTTGGAGTATTGTTGGGTATGATTGTTCTATATCGACTTGTGTTTTTGATTATTATCAAAACTACTGAGAAGCTTAAACCTATTGTTATGTCACTTATGTCGGTGTCTCCTAGGCAAACAAGACAAGTCTTGGAGAATCCTAGTGCCACTCCTTTACATATAGATGTTGTATAA

Protein sequence

>MS.gene42383.t1

DIEMDLAETGTISIEQAIDILVSSYSSSERNQEIKNEVSILSIVLSLKDNNSTYKKKHAGFLNQCLVLTRRSFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISIIPGAIAYYPPGLQKGFEHFIYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWKYPMFYIAFHRYAFQGSYKNEFEGLKFERDEIGGGGGGGGSLNYISGEEILRNKFQVDMSYSKWVDLGVLLGMIVLYRLVFLIIIKTTEKLKPIVMSLMSVSPRQTRQVLENPSATPLHIDVV