Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46176.t1 | KEH34363.1 | 87.2 | 156 | 20 | 0 | 7 | 162 | 131 | 286 | 1.60E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46176.t1 | A0A072UZ52 | 87.2 | 156 | 20 | 0 | 7 | 162 | 131 | 286 | 1.2e-70 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene46176 | 0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene049151 | MS.gene46176 | 0.800009 | 1.76E-48 | -1.69E-46 |
| MS.gene049153 | MS.gene46176 | 0.810115 | 1.35E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene46176 | 0.813268 | 2.79E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene46176 | 0.8262 | 3.09E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene46176 | 0.862144 | 6.24E-64 | -1.69E-46 |
| MS.gene049351 | MS.gene46176 | 0.820306 | 7.35E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene46176 | 0.812878 | 3.40E-51 | -1.69E-46 |
| MS.gene049426 | MS.gene46176 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene049661 | MS.gene46176 | 0.805073 | 1.59E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene46176 | 0.808084 | 3.68E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene46176 | 0.907089 | 7.38E-81 | -1.69E-46 |
| MS.gene049910 | MS.gene46176 | 0.819317 | 1.24E-52 | -1.69E-46 |
| MS.gene049915 | MS.gene46176 | 0.830452 | 2.91E-55 | -1.69E-46 |
| MS.gene050076 | MS.gene46176 | 0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene050099 | MS.gene46176 | 0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene46176 | 0.834325 | 3.20E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene46176 | 0.812492 | 4.12E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene46176 | 0.817082 | 3.97E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene46176 | 0.808054 | 3.74E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene46176 | 0.886765 | 2.57E-72 | -1.69E-46 |
| MS.gene050319 | MS.gene46176 | -0.801946 | 7.08E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene46176 | -0.80729 | 5.43E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene46176 | 0.851718 | 7.39E-61 | -1.69E-46 |
| MS.gene050406 | MS.gene46176 | 0.834131 | 3.58E-56 | -1.69E-46 |
| MS.gene050438 | MS.gene46176 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene050464 | MS.gene46176 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene46176 | 0.850478 | 1.66E-60 | -1.69E-46 |
| MS.gene050558 | MS.gene46176 | 0.843365 | 1.47E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene46176 | -0.806135 | 9.53E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene46176 | 0.816222 | 6.18E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene46176 | 0.807708 | 4.43E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene46176 | 0.841846 | 3.71E-58 | -1.69E-46 |
| MS.gene05119 | MS.gene46176 | -0.817804 | 2.73E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene46176 | 0.848126 | 7.48E-60 | -1.69E-46 |
| MS.gene051582 | MS.gene46176 | 0.835854 | 1.32E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene46176 | 0.847202 | 1.34E-59 | -1.69E-46 |
| MS.gene051663 | MS.gene46176 | 0.871808 | 5.15E-67 | -1.69E-46 |
| MS.gene051860 | MS.gene46176 | 0.865658 | 5.03E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene46176 | 0.831198 | 1.91E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene46176 | -0.80658 | 7.68E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene46176 | 0.835221 | 1.90E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene46176 | 0.83149 | 1.62E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene46176 | 0.859859 | 3.09E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene46176 | 0.815971 | 7.03E-52 | -1.69E-46 |
| MS.gene052207 | MS.gene46176 | 0.820834 | 5.56E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene46176 | 0.836211 | 1.07E-56 | -1.69E-46 |
| MS.gene052255 | MS.gene46176 | 0.810193 | 1.30E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene46176 | 0.837286 | 5.68E-57 | -1.69E-46 |
| MS.gene052326 | MS.gene46176 | 0.819655 | 1.04E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene46176 | 0.846718 | 1.82E-59 | -1.69E-46 |
| MS.gene052600 | MS.gene46176 | 0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene053073 | MS.gene46176 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene46176 | 0.806171 | 9.36E-50 | -1.69E-46 |
| MS.gene053184 | MS.gene46176 | 0.80764 | 4.58E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene46176 | 0.848027 | 7.96E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene46176 | 0.915646 | 4.59E-85 | -1.69E-46 |
| MS.gene053907 | MS.gene46176 | 0.827687 | 1.36E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene46176 | 0.835455 | 1.66E-56 | -1.69E-46 |
| MS.gene053971 | MS.gene46176 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene46176 | 0.810379 | 1.19E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene46176 | 0.827 | 1.99E-54 | -1.69E-46 |
| MS.gene054012 | MS.gene46176 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene46176 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene46176 | 0.811012 | 8.66E-51 | -1.69E-46 |
| MS.gene054214 | MS.gene46176 | 0.818028 | 2.43E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene46176 | 0.843611 | 1.26E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene46176 | 0.81545 | 9.19E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene46176 | 0.838878 | 2.21E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene46176 | 0.845698 | 3.45E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene46176 | 0.839545 | 1.49E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene46176 | 0.829991 | 3.78E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene46176 | 0.849902 | 2.40E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene46176 | 0.879104 | 1.64E-69 | -1.69E-46 |
| MS.gene055390 | MS.gene46176 | 0.851008 | 1.17E-60 | -1.69E-46 |
| MS.gene055422 | MS.gene46176 | 0.894367 | 2.64E-75 | -1.69E-46 |
| MS.gene055428 | MS.gene46176 | 0.878594 | 2.47E-69 | -1.69E-46 |
| MS.gene05553 | MS.gene46176 | 0.812055 | 5.14E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene46176 | 0.847634 | 1.02E-59 | -1.69E-46 |
| MS.gene055712 | MS.gene46176 | 0.860549 | 1.91E-63 | -1.69E-46 |
| MS.gene055859 | MS.gene46176 | 0.807905 | 4.02E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene46176 | 0.825333 | 4.96E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene46176 | 0.858335 | 8.84E-63 | -1.69E-46 |
| MS.gene056451 | MS.gene46176 | 0.808653 | 2.79E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene46176 | 0.854197 | 1.44E-61 | -1.69E-46 |
| MS.gene05663 | MS.gene46176 | 0.813783 | 2.15E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene46176 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene056875 | MS.gene46176 | 0.832665 | 8.30E-56 | -1.69E-46 |
| MS.gene056979 | MS.gene46176 | 0.825514 | 4.50E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene46176 | 0.878724 | 2.23E-69 | -1.69E-46 |
| MS.gene057121 | MS.gene46176 | 0.870329 | 1.58E-66 | -1.69E-46 |
| MS.gene057245 | MS.gene46176 | 0.843973 | 1.01E-58 | -1.69E-46 |
| MS.gene057260 | MS.gene46176 | 0.811517 | 6.73E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene46176 | 0.85511 | 7.86E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene46176 | 0.810774 | 9.75E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene46176 | 0.819407 | 1.18E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene46176 | 0.820075 | 8.31E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene46176 | 0.809189 | 2.14E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene46176 | 0.82801 | 1.14E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene46176 | 0.882515 | 9.77E-71 | -1.69E-46 |
| MS.gene05811 | MS.gene46176 | 0.864689 | 1.01E-64 | -1.69E-46 |
| MS.gene058142 | MS.gene46176 | 0.845721 | 3.40E-59 | -1.69E-46 |
| MS.gene058233 | MS.gene46176 | 0.82697 | 2.02E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene46176 | 0.814117 | 1.81E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene46176 | 0.847975 | 8.23E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene46176 | 0.811053 | 8.48E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene46176 | 0.836921 | 7.05E-57 | -1.69E-46 |
| MS.gene058787 | MS.gene46176 | 0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene46176 | 0.856336 | 3.45E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene46176 | 0.879687 | 1.02E-69 | -1.69E-46 |
| MS.gene059124 | MS.gene46176 | 0.823691 | 1.21E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene46176 | 0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene46176 | 0.829163 | 6.00E-55 | -1.69E-46 |
| MS.gene059518 | MS.gene46176 | 0.854972 | 8.62E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene46176 | 0.833119 | 6.40E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene46176 | 0.810236 | 1.27E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene46176 | 0.8354 | 1.72E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene46176 | 0.847668 | 1.00E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene46176 | 0.840317 | 9.35E-58 | -1.69E-46 |
| MS.gene05984 | MS.gene46176 | 0.862737 | 4.10E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene46176 | 0.863362 | 2.63E-64 | -1.69E-46 |
| MS.gene059899 | MS.gene46176 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene46176 | 0.873517 | 1.38E-67 | -1.69E-46 |
| MS.gene060403 | MS.gene46176 | 0.800701 | 1.27E-48 | -1.69E-46 |
| MS.gene060476 | MS.gene46176 | 0.851856 | 6.76E-61 | -1.69E-46 |
| MS.gene060495 | MS.gene46176 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene46176 | 0.890575 | 8.70E-74 | -1.69E-46 |
| MS.gene061051 | MS.gene46176 | -0.810524 | 1.10E-50 | -1.69E-46 |
| MS.gene061112 | MS.gene46176 | 0.824279 | 8.80E-54 | -1.69E-46 |
| MS.gene061113 | MS.gene46176 | 0.827398 | 1.60E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene46176 | 0.81406 | 1.87E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene46176 | 0.827507 | 1.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46176.t1 | MTR_3g465210 | 87.179 | 156 | 20 | 0 | 7 | 162 | 131 | 286 | 1.51e-95 | 280 |
| MS.gene46176.t1 | MTR_2g074890 | 56.069 | 173 | 71 | 2 | 6 | 173 | 303 | 475 | 9.29e-54 | 178 |
| MS.gene46176.t1 | MTR_4g020650 | 43.165 | 139 | 44 | 3 | 3 | 141 | 107 | 210 | 6.88e-25 | 98.2 |
| MS.gene46176.t1 | MTR_1g093780 | 38.298 | 188 | 85 | 7 | 25 | 200 | 341 | 509 | 5.59e-24 | 99.0 |
| MS.gene46176.t1 | MTR_6g004090 | 39.844 | 128 | 47 | 4 | 2 | 128 | 145 | 243 | 1.10e-20 | 88.2 |
| MS.gene46176.t1 | MTR_3g062250 | 37.222 | 180 | 81 | 6 | 19 | 186 | 407 | 566 | 2.00e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCAGCATACAAATTCTT+AGG | 0.239081 | 7.2:-40118056 | None:intergenic |
| GACAATACTGTTACCATCTA+AGG | 0.261816 | 7.2:-40118336 | None:intergenic |
| CCTGCGTTGGACCCTGTTAA+TGG | 0.262725 | 7.2:+40117819 | MS.gene46176:CDS |
| GTAAAATCTTGAGTAAGTTT+TGG | 0.291642 | 7.2:+40118090 | MS.gene46176:CDS |
| AAAGTCTGCCTCCCATTAAC+AGG | 0.322459 | 7.2:-40117831 | None:intergenic |
| TTCTTCCTGCCTTTCCTGCC+TGG | 0.324269 | 7.2:-40118302 | None:intergenic |
| CACTTCATGCTTGGTCCTTA+AGG | 0.334146 | 7.2:-40118394 | None:intergenic |
| AGAGAAAAGGGACTTGTAAT+GGG | 0.372414 | 7.2:-40117855 | None:intergenic |
| TGTGCCCCATGGTCAGTATC+AGG | 0.377851 | 7.2:-40118152 | None:intergenic |
| AAAGCTGCTAAAACCTTAGA+TGG | 0.379329 | 7.2:+40118323 | MS.gene46176:CDS |
| CTGCAACATTCTCATGAAGA+TGG | 0.393420 | 7.2:+40118269 | MS.gene46176:CDS |
| GAAGACTAGTGTTCGCCTTA+AGG | 0.406300 | 7.2:+40118379 | MS.gene46176:CDS |
| TAGAGAAAAGGGACTTGTAA+TGG | 0.430477 | 7.2:-40117856 | None:intergenic |
| CTGCGTTGGACCCTGTTAAT+GGG | 0.438681 | 7.2:+40117820 | MS.gene46176:CDS |
| CAATAGATGCACTTCATGCT+TGG | 0.444927 | 7.2:-40118403 | None:intergenic |
| AGTAGTGATGAGAGAAATGA+TGG | 0.455410 | 7.2:-40117982 | None:intergenic |
| AGTGACACAACAGTAGCATT+GGG | 0.466348 | 7.2:-40117912 | None:intergenic |
| AGAGTGAGTTTCCTTCAGAT+TGG | 0.475190 | 7.2:-40118231 | None:intergenic |
| GCTACTCTGATCTAGAGAAA+AGG | 0.476642 | 7.2:-40117868 | None:intergenic |
| TTTAGGGCAAGACAAGAGAA+AGG | 0.484388 | 7.2:+40118016 | MS.gene46176:CDS |
| TTAAACCAGGCAGGAAAGGC+AGG | 0.487147 | 7.2:+40118297 | MS.gene46176:CDS |
| CTACTCTGATCTAGAGAAAA+GGG | 0.490610 | 7.2:-40117867 | None:intergenic |
| GAGAATGTTGCAGAAGGTAC+TGG | 0.497175 | 7.2:-40118259 | None:intergenic |
| TAGATCAGAGTAGCAACATT+GGG | 0.512574 | 7.2:+40117877 | MS.gene46176:CDS |
| GAGCAACTGTCAAAGCTCAC+TGG | 0.513373 | 7.2:+40118178 | MS.gene46176:CDS |
| CTAGATCAGAGTAGCAACAT+TGG | 0.525289 | 7.2:+40117876 | MS.gene46176:CDS |
| TATGCTGCCTGTTTGAAAGA+TGG | 0.526527 | 7.2:+40118068 | MS.gene46176:CDS |
| AGGCAGCATACAAATTCTTA+GGG | 0.529642 | 7.2:-40118055 | None:intergenic |
| TTTATTAAACCAGGCAGGAA+AGG | 0.534943 | 7.2:+40118293 | MS.gene46176:CDS |
| AAGTGACACAACAGTAGCAT+TGG | 0.538667 | 7.2:-40117913 | None:intergenic |
| TTGTGTCACTTAGTGACGCT+AGG | 0.559850 | 7.2:+40117925 | MS.gene46176:CDS |
| AGAAAGGTTCACTTCACTGC+TGG | 0.569576 | 7.2:+40118032 | MS.gene46176:CDS |
| GAGTTCAGGTAATCCTGCGT+TGG | 0.581585 | 7.2:+40117806 | MS.gene46176:intron |
| TGGAACCTGATACTGACCAT+GGG | 0.590117 | 7.2:+40118147 | MS.gene46176:CDS |
| TTGGAACCTGATACTGACCA+TGG | 0.590328 | 7.2:+40118146 | MS.gene46176:CDS |
| TGTGTCACTTAGTGACGCTA+GGG | 0.600168 | 7.2:+40117926 | MS.gene46176:CDS |
| TGGTACTCTAGCCAATCTGA+AGG | 0.601845 | 7.2:+40118220 | MS.gene46176:CDS |
| AGTTGCTCTTGTGTGCCCCA+TGG | 0.612741 | 7.2:-40118163 | None:intergenic |
| CTTCATGAGAATGTTGCAGA+AGG | 0.612840 | 7.2:-40118265 | None:intergenic |
| CCATTAACAGGGTCCAACGC+AGG | 0.629983 | 7.2:-40117819 | None:intergenic |
| GAGAAAAGGGACTTGTAATG+GGG | 0.631154 | 7.2:-40117854 | None:intergenic |
| TGATGCTACTAATAGCACAT+TGG | 0.638027 | 7.2:+40118127 | MS.gene46176:CDS |
| CGTTGGACCCTGTTAATGGG+AGG | 0.639115 | 7.2:+40117823 | MS.gene46176:CDS |
| ATCAGAGTAGCAACATTGGG+AGG | 0.647982 | 7.2:+40117880 | MS.gene46176:CDS |
| GAGCATGATATAGACACAGA+TGG | 0.650912 | 7.2:+40118200 | MS.gene46176:CDS |
| AAGTCTGCCTCCCATTAACA+GGG | 0.677418 | 7.2:-40117830 | None:intergenic |
| GTGACACAACAGTAGCATTG+GGG | 0.683045 | 7.2:-40117911 | None:intergenic |
| GGAACCTGATACTGACCATG+GGG | 0.712683 | 7.2:+40118148 | MS.gene46176:CDS |
| GTAGTGATGAGAGAAATGAT+GGG | 0.786253 | 7.2:-40117981 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATGTAATCTC+CGG | - | chr7.2:40117548-40117567 | None:intergenic | 15.0% |
| !!! | TTTAGCATTATTTTTTGTAA+TGG | - | chr7.2:40117225-40117244 | None:intergenic | 15.0% |
| !!! | TTTAGTATTATTTTTTGTTG+AGG | + | chr7.2:40117341-40117360 | MS.gene46176:intron | 15.0% |
| !! | ACATATATGATATATCCAAA+AGG | - | chr7.2:40117661-40117680 | None:intergenic | 20.0% |
| !! | ATTCCTTCTTTATAATATGT+CGG | - | chr7.2:40117287-40117306 | None:intergenic | 20.0% |
| !! | GGATATATCATATATGTAAT+TGG | + | chr7.2:40117664-40117683 | MS.gene46176:intron | 20.0% |
| !! | GTTATGAAATTTATATATCG+AGG | + | chr7.2:40117249-40117268 | MS.gene46176:intron | 20.0% |
| !!! | TTTATTGTTGTTTCTGATTA+TGG | + | chr7.2:40116998-40117017 | MS.gene46176:intron | 20.0% |
| ! | GTCACATTATCATGAAAAAT+AGG | - | chr7.2:40117954-40117973 | None:intergenic | 25.0% |
| ! | TTCCTTCTTTATAATATGTC+GGG | - | chr7.2:40117286-40117305 | None:intergenic | 25.0% |
| ! | TTGTTGAGGATTAAATTGAA+GGG | + | chr7.2:40117355-40117374 | MS.gene46176:intron | 25.0% |
| ! | TTTGTTGAGGATTAAATTGA+AGG | + | chr7.2:40117354-40117373 | MS.gene46176:intron | 25.0% |
| !! | ACTACTAATGATGAGATTTT+AGG | + | chr7.2:40117999-40118018 | MS.gene46176:CDS | 25.0% |
| !! | ATGATCTAAGATAAGGTAAA+GGG | - | chr7.2:40117107-40117126 | None:intergenic | 25.0% |
| !! | CTACTAATGATGAGATTTTA+GGG | + | chr7.2:40118000-40118019 | MS.gene46176:CDS | 25.0% |
| !! | GTAAAATCTTGAGTAAGTTT+TGG | + | chr7.2:40118090-40118109 | MS.gene46176:CDS | 25.0% |
| !! | TTTTAAACTCAATGCTCATT+TGG | + | chr7.2:40117167-40117186 | MS.gene46176:intron | 25.0% |
| !! | TTTTTATGTCAAATTGCATC+TGG | + | chr7.2:40117418-40117437 | MS.gene46176:intron | 25.0% |
| AATCGTCCCTTTATTAAATG+TGG | + | chr7.2:40117689-40117708 | MS.gene46176:intron | 30.0% | |
| ATCCTGCTAAATTGGATAAA+AGG | + | chr7.2:40117763-40117782 | MS.gene46176:intron | 30.0% | |
| ATCGTCCCTTTATTAAATGT+GGG | + | chr7.2:40117690-40117709 | MS.gene46176:intron | 30.0% | |
| GTTAGTGTAGCACTAAAATA+GGG | + | chr7.2:40117035-40117054 | MS.gene46176:intron | 30.0% | |
| TATAGATGATCCTGCTAAAT+TGG | + | chr7.2:40117755-40117774 | MS.gene46176:intron | 30.0% | |
| TGAAGGGTAATAAAATTGTC+AGG | + | chr7.2:40117371-40117390 | MS.gene46176:intron | 30.0% | |
| TGCAAGATACGTATATGATA+CGG | - | chr7.2:40117482-40117501 | None:intergenic | 30.0% | |
| TGTTAGTGTAGCACTAAAAT+AGG | + | chr7.2:40117034-40117053 | MS.gene46176:intron | 30.0% | |
| TTCCCGACATATTATAAAGA+AGG | + | chr7.2:40117281-40117300 | MS.gene46176:intron | 30.0% | |
| ! | AATACTTTTCAGATACATCG+AGG | + | chr7.2:40117584-40117603 | MS.gene46176:intron | 30.0% |
| ! | ATACTTTTCAGATACATCGA+GGG | + | chr7.2:40117585-40117604 | MS.gene46176:intron | 30.0% |
| ! | GATGATCTAAGATAAGGTAA+AGG | - | chr7.2:40117108-40117127 | None:intergenic | 30.0% |
| ! | GATTTTACCATCTTTCAAAC+AGG | - | chr7.2:40118078-40118097 | None:intergenic | 30.0% |
| ! | TCCATAACATTTTCAAAACG+AGG | - | chr7.2:40117317-40117336 | None:intergenic | 30.0% |
| ! | TTCCTTTTATCCAATTTAGC+AGG | - | chr7.2:40117768-40117787 | None:intergenic | 30.0% |
| !! | AAATCTTGAGTAAGTTTTGG+AGG | + | chr7.2:40118093-40118112 | MS.gene46176:CDS | 30.0% |
| !!! | AATCTTGAGTAAGTTTTGGA+GGG | + | chr7.2:40118094-40118113 | MS.gene46176:CDS | 30.0% |
| !!! | GAAGATGGTTTTATTAAACC+AGG | + | chr7.2:40118284-40118303 | MS.gene46176:CDS | 30.0% |
| !!! | TCCTCGTTTTGAAAATGTTA+TGG | + | chr7.2:40117313-40117332 | MS.gene46176:intron | 30.0% |
| AAAGCTGCTAAAACCTTAGA+TGG | + | chr7.2:40118323-40118342 | MS.gene46176:CDS | 35.0% | |
| AGAGAAAAGGGACTTGTAAT+GGG | - | chr7.2:40117858-40117877 | None:intergenic | 35.0% | |
| AGGCAGCATACAAATTCTTA+GGG | - | chr7.2:40118058-40118077 | None:intergenic | 35.0% | |
| AGTAGTGATGAGAGAAATGA+TGG | - | chr7.2:40117985-40118004 | None:intergenic | 35.0% | |
| CTACTCTGATCTAGAGAAAA+GGG | - | chr7.2:40117870-40117889 | None:intergenic | 35.0% | |
| GACAATACTGTTACCATCTA+AGG | - | chr7.2:40118339-40118358 | None:intergenic | 35.0% | |
| GTAGTGATGAGAGAAATGAT+GGG | - | chr7.2:40117984-40118003 | None:intergenic | 35.0% | |
| TAGAGAAAAGGGACTTGTAA+TGG | - | chr7.2:40117859-40117878 | None:intergenic | 35.0% | |
| TAGATCAGAGTAGCAACATT+GGG | + | chr7.2:40117877-40117896 | MS.gene46176:CDS | 35.0% | |
| TCGTCCCTTTATTAAATGTG+GGG | + | chr7.2:40117691-40117710 | MS.gene46176:intron | 35.0% | |
| TGATGCTACTAATAGCACAT+TGG | + | chr7.2:40118127-40118146 | MS.gene46176:CDS | 35.0% | |
| TTCCCCCCACATTTAATAAA+GGG | - | chr7.2:40117698-40117717 | None:intergenic | 35.0% | |
| TTTATTAAACCAGGCAGGAA+AGG | + | chr7.2:40118293-40118312 | MS.gene46176:CDS | 35.0% | |
| ! | ACGTGTGATGATCTAAGATA+AGG | - | chr7.2:40117114-40117133 | None:intergenic | 35.0% |
| ! | GATTAACAGTGTTCTCCTTT+TGG | + | chr7.2:40117643-40117662 | MS.gene46176:intron | 35.0% |
| !!! | ATGGTTTTATTAAACCAGGC+AGG | + | chr7.2:40118288-40118307 | MS.gene46176:CDS | 35.0% |
| AAGTGACACAACAGTAGCAT+TGG | - | chr7.2:40117916-40117935 | None:intergenic | 40.0% | |
| AGAGTGAGTTTCCTTCAGAT+TGG | - | chr7.2:40118234-40118253 | None:intergenic | 40.0% | |
| AGTGACACAACAGTAGCATT+GGG | - | chr7.2:40117915-40117934 | None:intergenic | 40.0% | |
| CAGGCAGCATACAAATTCTT+AGG | - | chr7.2:40118059-40118078 | None:intergenic | 40.0% | |
| CGTCCCTTTATTAAATGTGG+GGG | + | chr7.2:40117692-40117711 | MS.gene46176:intron | 40.0% | |
| CTAGATCAGAGTAGCAACAT+TGG | + | chr7.2:40117876-40117895 | MS.gene46176:CDS | 40.0% | |
| CTGCAACATTCTCATGAAGA+TGG | + | chr7.2:40118269-40118288 | MS.gene46176:CDS | 40.0% | |
| CTTCATGAGAATGTTGCAGA+AGG | - | chr7.2:40118268-40118287 | None:intergenic | 40.0% | |
| CTTCCCCCCACATTTAATAA+AGG | - | chr7.2:40117699-40117718 | None:intergenic | 40.0% | |
| GAGAAAAGGGACTTGTAATG+GGG | - | chr7.2:40117857-40117876 | None:intergenic | 40.0% | |
| GAGCATGATATAGACACAGA+TGG | + | chr7.2:40118200-40118219 | MS.gene46176:CDS | 40.0% | |
| GCTACTCTGATCTAGAGAAA+AGG | - | chr7.2:40117871-40117890 | None:intergenic | 40.0% | |
| GTCCCTTTATTAAATGTGGG+GGG | + | chr7.2:40117693-40117712 | MS.gene46176:intron | 40.0% | |
| TAGTGCTACACTAACATCAG+AGG | - | chr7.2:40117030-40117049 | None:intergenic | 40.0% | |
| TATGCTGCCTGTTTGAAAGA+TGG | + | chr7.2:40118068-40118087 | MS.gene46176:CDS | 40.0% | |
| ! | AGTCAAGTTTTCCCTCTCTA+AGG | - | chr7.2:40117724-40117743 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAGACAAGAGAA+AGG | + | chr7.2:40118016-40118035 | MS.gene46176:CDS | 40.0% |
| AAAGTCTGCCTCCCATTAAC+AGG | - | chr7.2:40117834-40117853 | None:intergenic | 45.0% | |
| AAGTCTGCCTCCCATTAACA+GGG | - | chr7.2:40117833-40117852 | None:intergenic | 45.0% | |
| AGAAAGGTTCACTTCACTGC+TGG | + | chr7.2:40118032-40118051 | MS.gene46176:CDS | 45.0% | |
| ATACTCTCCCGATACGTATC+GGG | - | chr7.2:40117525-40117544 | None:intergenic | 45.0% | |
| ATCAGAGTAGCAACATTGGG+AGG | + | chr7.2:40117880-40117899 | MS.gene46176:CDS | 45.0% | |
| GAAGACTAGTGTTCGCCTTA+AGG | + | chr7.2:40118379-40118398 | MS.gene46176:CDS | 45.0% | |
| GATACTCTCCCGATACGTAT+CGG | - | chr7.2:40117526-40117545 | None:intergenic | 45.0% | |
| GGGGTGTATCAGACAAGTAT+AGG | - | chr7.2:40117505-40117524 | None:intergenic | 45.0% | |
| GTGACACAACAGTAGCATTG+GGG | - | chr7.2:40117914-40117933 | None:intergenic | 45.0% | |
| TGATACACCCCGATACGTAT+CGG | + | chr7.2:40117514-40117533 | MS.gene46176:intron | 45.0% | |
| TGGAACCTGATACTGACCAT+GGG | + | chr7.2:40118147-40118166 | MS.gene46176:CDS | 45.0% | |
| TGGTACTCTAGCCAATCTGA+AGG | + | chr7.2:40118220-40118239 | MS.gene46176:CDS | 45.0% | |
| TTGGAACCTGATACTGACCA+TGG | + | chr7.2:40118146-40118165 | MS.gene46176:CDS | 45.0% | |
| ! | GAGAATGTTGCAGAAGGTAC+TGG | - | chr7.2:40118262-40118281 | None:intergenic | 45.0% |
| !! | ACACTTGCTGCTTTGAGTTC+AGG | + | chr7.2:40117792-40117811 | MS.gene46176:intron | 45.0% |
| !! | ATACGTATCGGGAGAGTATC+CGG | + | chr7.2:40117526-40117545 | MS.gene46176:intron | 45.0% |
| !! | TGTGTCACTTAGTGACGCTA+GGG | + | chr7.2:40117926-40117945 | MS.gene46176:CDS | 45.0% |
| !! | TTGTGTCACTTAGTGACGCT+AGG | + | chr7.2:40117925-40117944 | MS.gene46176:CDS | 45.0% |
| !!! | GAGTAAGTTTTGGAGGGATG+AGG | + | chr7.2:40118100-40118119 | MS.gene46176:CDS | 45.0% |
| CTGCGTTGGACCCTGTTAAT+GGG | + | chr7.2:40117820-40117839 | MS.gene46176:CDS | 50.0% | |
| GAGCAACTGTCAAAGCTCAC+TGG | + | chr7.2:40118178-40118197 | MS.gene46176:CDS | 50.0% | |
| GAGTTCAGGTAATCCTGCGT+TGG | + | chr7.2:40117806-40117825 | MS.gene46176:intron | 50.0% | |
| GATACACCCCGATACGTATC+GGG | + | chr7.2:40117515-40117534 | MS.gene46176:intron | 50.0% | |
| GGAACCTGATACTGACCATG+GGG | + | chr7.2:40118148-40118167 | MS.gene46176:CDS | 50.0% | |
| TACTCTCCCGATACGTATCG+GGG | - | chr7.2:40117524-40117543 | None:intergenic | 50.0% | |
| TTAAACCAGGCAGGAAAGGC+AGG | + | chr7.2:40118297-40118316 | MS.gene46176:CDS | 50.0% | |
| AGTTGCTCTTGTGTGCCCCA+TGG | - | chr7.2:40118166-40118185 | None:intergenic | 55.0% | |
| CCATTAACAGGGTCCAACGC+AGG | - | chr7.2:40117822-40117841 | None:intergenic | 55.0% | |
| CCTGCGTTGGACCCTGTTAA+TGG | + | chr7.2:40117819-40117838 | MS.gene46176:CDS | 55.0% | |
| CGTTGGACCCTGTTAATGGG+AGG | + | chr7.2:40117823-40117842 | MS.gene46176:CDS | 55.0% | |
| GGGGGGAAGTTCCTTAGAGA+GGG | + | chr7.2:40117710-40117729 | MS.gene46176:intron | 55.0% | |
| TGGGGGGAAGTTCCTTAGAG+AGG | + | chr7.2:40117709-40117728 | MS.gene46176:intron | 55.0% | |
| TGTGCCCCATGGTCAGTATC+AGG | - | chr7.2:40118155-40118174 | None:intergenic | 55.0% | |
| TTCTTCCTGCCTTTCCTGCC+TGG | - | chr7.2:40118305-40118324 | None:intergenic | 55.0% | |
| GGTACGCGAGCGATTGACGA+TGG | + | chr7.2:40117606-40117625 | MS.gene46176:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 40116958 | 40118412 | 40116958 | ID=MS.gene46176 |
| chr7.2 | mRNA | 40116958 | 40118412 | 40116958 | ID=MS.gene46176.t1;Parent=MS.gene46176 |
| chr7.2 | exon | 40116958 | 40116976 | 40116958 | ID=MS.gene46176.t1.exon1;Parent=MS.gene46176.t1 |
| chr7.2 | CDS | 40116958 | 40116976 | 40116958 | ID=cds.MS.gene46176.t1;Parent=MS.gene46176.t1 |
| chr7.2 | exon | 40117814 | 40118412 | 40117814 | ID=MS.gene46176.t1.exon2;Parent=MS.gene46176.t1 |
| chr7.2 | CDS | 40117814 | 40118412 | 40117814 | ID=cds.MS.gene46176.t1;Parent=MS.gene46176.t1 |
| Gene Sequence |
| Protein sequence |
