Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48962.t1 | RHN59274.1 | 97.7 | 440 | 10 | 0 | 1 | 440 | 8 | 447 | 5.30E-244 | 853.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48962.t1 | O22145 | 74.4 | 438 | 106 | 3 | 4 | 440 | 44 | 476 | 2.7e-188 | 659.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48962.t1 | G7JFU1 | 97.7 | 440 | 10 | 0 | 1 | 440 | 1 | 440 | 3.8e-244 | 853.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene48962 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene049171 | MS.gene48962 | 0.882215 | 1.26E-70 | -1.69E-46 |
| MS.gene049217 | MS.gene48962 | 0.843369 | 1.46E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene48962 | 0.872665 | 2.67E-67 | -1.69E-46 |
| MS.gene049232 | MS.gene48962 | 0.821019 | 5.04E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene48962 | 0.867182 | 1.65E-65 | -1.69E-46 |
| MS.gene049320 | MS.gene48962 | 0.833095 | 6.49E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene48962 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene049627 | MS.gene48962 | 0.848233 | 6.99E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene48962 | 0.833753 | 4.45E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene48962 | 0.834808 | 2.42E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene48962 | 0.8501 | 2.11E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene48962 | 0.845546 | 3.80E-59 | -1.69E-46 |
| MS.gene050170 | MS.gene48962 | 0.846433 | 2.18E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene48962 | 0.835721 | 1.42E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene48962 | 0.832732 | 7.99E-56 | -1.69E-46 |
| MS.gene050444 | MS.gene48962 | 0.831413 | 1.69E-55 | -1.69E-46 |
| MS.gene050496 | MS.gene48962 | 0.828964 | 6.71E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene48962 | 0.869285 | 3.47E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene48962 | 0.844776 | 6.13E-59 | -1.69E-46 |
| MS.gene050577 | MS.gene48962 | 0.845155 | 4.84E-59 | -1.69E-46 |
| MS.gene050612 | MS.gene48962 | 0.837305 | 5.62E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene48962 | 0.830652 | 2.60E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene48962 | 0.843272 | 1.55E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene48962 | 0.837097 | 6.35E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene48962 | 0.836286 | 1.02E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene48962 | 0.821671 | 3.57E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene48962 | 0.857082 | 2.08E-62 | -1.69E-46 |
| MS.gene050871 | MS.gene48962 | 0.853837 | 1.84E-61 | -1.69E-46 |
| MS.gene050876 | MS.gene48962 | 0.830095 | 3.56E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene48962 | 0.872553 | 2.91E-67 | -1.69E-46 |
| MS.gene050950 | MS.gene48962 | 0.821451 | 4.01E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene48962 | 0.826613 | 2.46E-54 | -1.69E-46 |
| MS.gene05100 | MS.gene48962 | 0.840765 | 7.14E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene48962 | 0.815464 | 9.12E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene48962 | 0.830583 | 2.71E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene48962 | 0.828695 | 7.79E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene48962 | 0.818904 | 1.54E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene48962 | 0.83793 | 3.89E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene48962 | 0.807589 | 4.69E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene48962 | 0.821149 | 4.71E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene48962 | 0.821608 | 3.69E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene48962 | 0.847049 | 1.48E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene48962 | 0.826316 | 2.90E-54 | -1.69E-46 |
| MS.gene052486 | MS.gene48962 | 0.835228 | 1.90E-56 | -1.69E-46 |
| MS.gene052503 | MS.gene48962 | 0.833692 | 4.61E-56 | -1.69E-46 |
| MS.gene052506 | MS.gene48962 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene052822 | MS.gene48962 | 0.813777 | 2.16E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene48962 | 0.829525 | 4.90E-55 | -1.69E-46 |
| MS.gene052825 | MS.gene48962 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene48962 | 0.80658 | 7.68E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene48962 | 0.810524 | 1.10E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene48962 | 0.847429 | 1.16E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene48962 | 0.858575 | 7.50E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene48962 | 0.825874 | 3.70E-54 | -1.69E-46 |
| MS.gene053284 | MS.gene48962 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene053285 | MS.gene48962 | 0.805621 | 1.22E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene48962 | 0.826762 | 2.27E-54 | -1.69E-46 |
| MS.gene053421 | MS.gene48962 | -0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene48962 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene48962 | 0.837838 | 4.10E-57 | -1.69E-46 |
| MS.gene053480 | MS.gene48962 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene48962 | 0.801597 | 8.35E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene48962 | 0.83393 | 4.02E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene48962 | 0.857502 | 1.56E-62 | -1.69E-46 |
| MS.gene054408 | MS.gene48962 | 0.814833 | 1.26E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene48962 | 0.847487 | 1.12E-59 | -1.69E-46 |
| MS.gene054600 | MS.gene48962 | 0.842292 | 2.83E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene48962 | 0.825249 | 5.20E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene48962 | -0.803685 | 3.10E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene48962 | 0.872259 | 3.65E-67 | -1.69E-46 |
| MS.gene054927 | MS.gene48962 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene48962 | 0.858554 | 7.61E-63 | -1.69E-46 |
| MS.gene055206 | MS.gene48962 | 0.814998 | 1.16E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene48962 | 0.860955 | 1.44E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene48962 | 0.84564 | 3.58E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene48962 | 0.879981 | 7.99E-70 | -1.69E-46 |
| MS.gene055748 | MS.gene48962 | 0.851747 | 7.26E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene48962 | 0.822258 | 2.61E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene48962 | 0.84891 | 4.54E-60 | -1.69E-46 |
| MS.gene05589 | MS.gene48962 | 0.846891 | 1.63E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene48962 | 0.836818 | 7.49E-57 | -1.69E-46 |
| MS.gene056374 | MS.gene48962 | 0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene056409 | MS.gene48962 | 0.848562 | 5.66E-60 | -1.69E-46 |
| MS.gene056449 | MS.gene48962 | 0.808812 | 2.58E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene48962 | 0.830458 | 2.90E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene48962 | 0.856773 | 2.56E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene48962 | 0.85553 | 5.93E-62 | -1.69E-46 |
| MS.gene056610 | MS.gene48962 | 0.849255 | 3.64E-60 | -1.69E-46 |
| MS.gene056657 | MS.gene48962 | 0.827896 | 1.21E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene48962 | 0.836685 | 8.09E-57 | -1.69E-46 |
| MS.gene056878 | MS.gene48962 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene056946 | MS.gene48962 | 0.801252 | 9.83E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene48962 | 0.817715 | 2.86E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene48962 | 0.853481 | 2.32E-61 | -1.69E-46 |
| MS.gene057831 | MS.gene48962 | 0.860425 | 2.08E-63 | -1.69E-46 |
| MS.gene058157 | MS.gene48962 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene48962 | -0.819903 | 9.09E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene48962 | 0.825832 | 3.78E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene48962 | 0.84877 | 4.96E-60 | -1.69E-46 |
| MS.gene058544 | MS.gene48962 | 0.841555 | 4.43E-58 | -1.69E-46 |
| MS.gene058773 | MS.gene48962 | 0.872708 | 2.58E-67 | -1.69E-46 |
| MS.gene058838 | MS.gene48962 | 0.85918 | 4.94E-63 | -1.69E-46 |
| MS.gene059022 | MS.gene48962 | 0.866326 | 3.09E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene48962 | 0.876992 | 8.98E-69 | -1.69E-46 |
| MS.gene05912 | MS.gene48962 | 0.821221 | 4.53E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene48962 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene48962 | 0.815648 | 8.30E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene48962 | 0.871911 | 4.76E-67 | -1.69E-46 |
| MS.gene059718 | MS.gene48962 | 0.857207 | 1.91E-62 | -1.69E-46 |
| MS.gene059756 | MS.gene48962 | 0.853806 | 1.87E-61 | -1.69E-46 |
| MS.gene059801 | MS.gene48962 | 0.863307 | 2.73E-64 | -1.69E-46 |
| MS.gene059865 | MS.gene48962 | 0.833004 | 6.84E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene48962 | 0.82153 | 3.85E-53 | -1.69E-46 |
| MS.gene06000 | MS.gene48962 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene48962 | -0.802303 | 5.98E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene48962 | 0.826201 | 3.09E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene48962 | 0.876264 | 1.60E-68 | -1.69E-46 |
| MS.gene060778 | MS.gene48962 | 0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene48962 | 0.873077 | 1.94E-67 | -1.69E-46 |
| MS.gene06092 | MS.gene48962 | 0.826204 | 3.08E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene48962 | 0.840519 | 8.28E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene48962 | 0.86569 | 4.92E-65 | -1.69E-46 |
| MS.gene061171 | MS.gene48962 | 0.804332 | 2.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48962.t1 | MTR_4g024920 | 97.727 | 440 | 10 | 0 | 1 | 440 | 1 | 440 | 0.0 | 890 |
| MS.gene48962.t1 | MTR_4g024920 | 97.273 | 440 | 11 | 1 | 1 | 440 | 24 | 462 | 0.0 | 881 |
| MS.gene48962.t1 | MTR_1g090817 | 29.377 | 337 | 209 | 10 | 49 | 383 | 1 | 310 | 4.68e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48962.t1 | AT2G45270 | 71.520 | 467 | 103 | 5 | 4 | 440 | 10 | 476 | 0.0 | 686 |
| MS.gene48962.t1 | AT4G22720 | 27.222 | 360 | 232 | 10 | 49 | 405 | 5 | 337 | 3.24e-26 | 109 |
| MS.gene48962.t1 | AT4G22720 | 27.222 | 360 | 232 | 10 | 49 | 405 | 5 | 337 | 3.24e-26 | 109 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCGAAGAAATAGGAATTT+TGG | 0.172358 | 4.3:-73675653 | None:intergenic |
| TTCATGGCCCTACTTATTTC+AGG | 0.211187 | 4.3:+73672939 | MS.gene48962:CDS |
| CGATGGAGATATTGTCGTTT+TGG | 0.239610 | 4.3:+73667874 | MS.gene48962:CDS |
| CTCATTCTTGCACGTGATCT+TGG | 0.264225 | 4.3:+73674841 | MS.gene48962:CDS |
| TCATAACTTGCCGAAGAAAT+AGG | 0.276413 | 4.3:-73675661 | None:intergenic |
| ACTGCAGTTGCTGTTACTAT+TGG | 0.293726 | 4.3:+73671093 | MS.gene48962:CDS |
| ACAATATCTCCATCGCGTTT+TGG | 0.296261 | 4.3:-73667866 | None:intergenic |
| CAGAAGGCTCGGAGAATTGC+TGG | 0.308815 | 4.3:+73672356 | MS.gene48962:CDS |
| AGATTTGCAGTTCCCGTTCA+TGG | 0.329140 | 4.3:+73672923 | MS.gene48962:CDS |
| ACTCAATTGCCAGTCTTACT+TGG | 0.331056 | 4.3:-73675225 | None:intergenic |
| GCAGACCTGCTTGTGAAGTA+TGG | 0.338654 | 4.3:+73670335 | MS.gene48962:CDS |
| AGAAGAACCAGAAGACTTTC+TGG | 0.361040 | 4.3:+73676400 | MS.gene48962:CDS |
| CAATCCTTATGCTGCCTCAT+TGG | 0.365186 | 4.3:-73675175 | None:intergenic |
| ATGAATTCGTGCCGTTCTTA+AGG | 0.381153 | 4.3:-73676784 | None:intergenic |
| AATGGCTTGGACTTGATATA+AGG | 0.384502 | 4.3:+73674929 | MS.gene48962:CDS |
| GGCTTTAATTTACCAATTGT+TGG | 0.392882 | 4.3:+73672380 | MS.gene48962:CDS |
| CTGCGGGTAGAGTGTTTGTA+TGG | 0.397231 | 4.3:-73667818 | None:intergenic |
| GAATAAATTATTACCATTGT+CGG | 0.398616 | 4.3:-73676148 | None:intergenic |
| TGTCTGTTGCAGGTTGTCTC+TGG | 0.399323 | 4.3:+73676030 | MS.gene48962:intron |
| AGTTGCTGTTACTATTGGTC+CGG | 0.399928 | 4.3:+73671098 | MS.gene48962:CDS |
| TGTACGCCCAAGGTGGCCGC+TGG | 0.403286 | 4.3:+73676725 | MS.gene48962:CDS |
| TGCCAAAATTCCTATTTCTT+CGG | 0.408888 | 4.3:+73675651 | MS.gene48962:CDS |
| GAGCCAAGTGATATCTTCTC+AGG | 0.416005 | 4.3:+73668045 | MS.gene48962:CDS |
| GTTTGTATGGGAGATGGATT+CGG | 0.416433 | 4.3:-73667805 | None:intergenic |
| GGTTCTTCTGCAGGAGGTGG+AGG | 0.418700 | 4.3:-73676386 | None:intergenic |
| ACCATTGTCGGTACAAAGCC+GGG | 0.420683 | 4.3:-73676136 | None:intergenic |
| TCATTCTTGCACGTGATCTT+GGG | 0.424423 | 4.3:+73674842 | MS.gene48962:CDS |
| AAACATACCAGAAAGTCTTC+TGG | 0.427747 | 4.3:-73676407 | None:intergenic |
| TTGCGTCAAATCAATATGTT+CGG | 0.427836 | 4.3:+73676058 | MS.gene48962:CDS |
| TCGGTACAAAGCCGGGGAGG+AGG | 0.428111 | 4.3:-73676129 | None:intergenic |
| TCTGGTTCTTCTGCAGGAGG+TGG | 0.428517 | 4.3:-73676389 | None:intergenic |
| AAATTTACGCGGGAAATTGT+TGG | 0.431992 | 4.3:-73667749 | None:intergenic |
| AAGTCTTCTGGTTCTTCTGC+AGG | 0.443693 | 4.3:-73676395 | None:intergenic |
| CTCAATTGCCAGTCTTACTT+GGG | 0.447580 | 4.3:-73675224 | None:intergenic |
| TACCATTGTCGGTACAAAGC+CGG | 0.451552 | 4.3:-73676137 | None:intergenic |
| CAGTCATATAAGCTTTATCA+AGG | 0.452366 | 4.3:-73671059 | None:intergenic |
| ACTACCAGATGTCTTATAGA+AGG | 0.455291 | 4.3:-73675929 | None:intergenic |
| CTCTACCCGCAGCTTCTCTT+CGG | 0.461141 | 4.3:+73667829 | MS.gene48962:CDS |
| CTTATGACAAGTCAGCAAAA+TGG | 0.461556 | 4.3:+73674911 | MS.gene48962:CDS |
| AAGTGGTGGTCCTGCTATAG+AGG | 0.468477 | 4.3:+73674954 | MS.gene48962:CDS |
| TCTTCACAACCGTATCAAGC+TGG | 0.470837 | 4.3:-73676083 | None:intergenic |
| CTTGGGCAATACATACAACT+TGG | 0.471005 | 4.3:+73674859 | MS.gene48962:CDS |
| GGAGCCTTCTATAAGACATC+TGG | 0.477018 | 4.3:+73675925 | MS.gene48962:CDS |
| GAATATTACCTGAAATAAGT+AGG | 0.477281 | 4.3:-73672947 | None:intergenic |
| GATTGCAACTTCTCTTATGC+TGG | 0.480476 | 4.3:+73675193 | MS.gene48962:CDS |
| TGCGTCAAATCAATATGTTC+GGG | 0.489887 | 4.3:+73676059 | MS.gene48962:CDS |
| ATGTGATGGACGCCAACAAT+TGG | 0.491621 | 4.3:-73672392 | None:intergenic |
| GATGTGAAGAGTGAAGGTTT+AGG | 0.492054 | 4.3:-73667776 | None:intergenic |
| GTTGCTGTTACTATTGGTCC+GGG | 0.495817 | 4.3:+73671099 | MS.gene48962:CDS |
| GTACGCCCAAGGTGGCCGCT+GGG | 0.501523 | 4.3:+73676726 | MS.gene48962:CDS |
| GGTTCCAATGAGGCAGCATA+AGG | 0.503532 | 4.3:+73675171 | MS.gene48962:intron |
| ATGGTTTAGGTGAGAAGTGA+CGG | 0.505000 | 4.3:+73668013 | MS.gene48962:intron |
| AACTTGTATGCCCTCCTCCC+CGG | 0.507308 | 4.3:+73676118 | MS.gene48962:CDS |
| TAGAGTGTTTGTATGGGAGA+TGG | 0.508713 | 4.3:-73667811 | None:intergenic |
| GACAAGTCAGCAAAATGGCT+TGG | 0.508751 | 4.3:+73674916 | MS.gene48962:CDS |
| CGGTACAAAGCCGGGGAGGA+GGG | 0.513180 | 4.3:-73676128 | None:intergenic |
| TGCTATAGAGGAGCTTGCTA+AGG | 0.520558 | 4.3:+73674966 | MS.gene48962:CDS |
| AGAAGGCTCGGAGAATTGCT+GGG | 0.520907 | 4.3:+73672357 | MS.gene48962:CDS |
| AAATAAGTAGGGCCATGAAC+GGG | 0.522516 | 4.3:-73672935 | None:intergenic |
| GAATAGGTGTAATGGTTGCT+TGG | 0.523654 | 4.3:+73676327 | MS.gene48962:intron |
| TCACTCACAAGTGATAGATC+AGG | 0.525983 | 4.3:+73670388 | MS.gene48962:CDS |
| GGTTTAAGTCTCTGCCTTCG+TGG | 0.527530 | 4.3:+73671120 | MS.gene48962:CDS |
| CTGTTGCAGGTTGTCTCTGG+TGG | 0.533183 | 4.3:+73676033 | MS.gene48962:intron |
| GATACGGTTGTGAAGAAGAA+TGG | 0.534130 | 4.3:+73676090 | MS.gene48962:CDS |
| CATGGAGGCTCATGCTCTAG+TGG | 0.537949 | 4.3:+73672412 | MS.gene48962:CDS |
| GGTGTAATGGTTGCTTGGAC+TGG | 0.539870 | 4.3:+73676332 | MS.gene48962:intron |
| ACTACAATAGATGATGCTAT+TGG | 0.540839 | 4.3:+73674883 | MS.gene48962:CDS |
| TGTTCGGGCCCAGCTTGATA+CGG | 0.540927 | 4.3:+73676074 | MS.gene48962:CDS |
| TACGCCCAAGGTGGCCGCTG+GGG | 0.542060 | 4.3:+73676727 | MS.gene48962:CDS |
| AATTCAGTGGGCATTGAAGA+TGG | 0.542394 | 4.3:+73675904 | MS.gene48962:CDS |
| CTTCACAACCGTATCAAGCT+GGG | 0.543812 | 4.3:-73676082 | None:intergenic |
| TTAGCAAGCTCCTCTATAGC+AGG | 0.544377 | 4.3:-73674964 | None:intergenic |
| AAAATAAAAGCTTACGATAG+CGG | 0.546361 | 4.3:-73667927 | None:intergenic |
| TGAATTAGAGATGTAAGAGA+AGG | 0.551377 | 4.3:-73676807 | None:intergenic |
| AATTGCAGTATTACATCTTG+AGG | 0.551614 | 4.3:+73675865 | MS.gene48962:CDS |
| AATATTACCTGAAATAAGTA+GGG | 0.554523 | 4.3:-73672946 | None:intergenic |
| GAGGAGGGCATACAAGTTGA+AGG | 0.557928 | 4.3:-73676113 | None:intergenic |
| ACGCCCAAGGTGGCCGCTGG+GGG | 0.559762 | 4.3:+73676728 | MS.gene48962:CDS |
| AATTGTTGGCGTCCATCACA+TGG | 0.562392 | 4.3:+73672394 | MS.gene48962:CDS |
| TCTTCTGGTTCTTCTGCAGG+AGG | 0.563864 | 4.3:-73676392 | None:intergenic |
| GAGCATGAGCCTCCATGTGA+TGG | 0.565179 | 4.3:-73672406 | None:intergenic |
| TATAGAGGAGCTTGCTAAGG+AGG | 0.565375 | 4.3:+73674969 | MS.gene48962:CDS |
| GAAGGCTCGGAGAATTGCTG+GGG | 0.575169 | 4.3:+73672358 | MS.gene48962:CDS |
| CGCCTCCATACTTCACAAGC+AGG | 0.575654 | 4.3:-73670340 | None:intergenic |
| CCCCGGCTTTGTACCGACAA+TGG | 0.576842 | 4.3:+73676135 | MS.gene48962:CDS |
| CAGTATTACATCTTGAGGAA+AGG | 0.576903 | 4.3:+73675870 | MS.gene48962:CDS |
| CGGAGAGATGTGAAGAGTGA+AGG | 0.577110 | 4.3:-73667782 | None:intergenic |
| GAAATAAGTAGGGCCATGAA+CGG | 0.584146 | 4.3:-73672936 | None:intergenic |
| TTCAGTATGATGTACGCCCA+AGG | 0.592571 | 4.3:+73676715 | MS.gene48962:intron |
| GGACTTGATATAAGGAGAAG+TGG | 0.600241 | 4.3:+73674937 | MS.gene48962:CDS |
| TAAAGCTTATATGACTGAGA+AGG | 0.603601 | 4.3:+73671065 | MS.gene48962:CDS |
| ATAACTAACCTGAAAAGAAG+CGG | 0.603786 | 4.3:-73675710 | None:intergenic |
| AGGCTCATGCTCTAGTGGCT+AGG | 0.604785 | 4.3:+73672417 | MS.gene48962:CDS |
| ATAGAGGAGCTTGCTAAGGA+GGG | 0.607465 | 4.3:+73674970 | MS.gene48962:CDS |
| TTTCAGTCGCTCCTTAAGAA+CGG | 0.607827 | 4.3:+73676773 | MS.gene48962:CDS |
| GGTATTGAGCACTTTCGCGT+AGG | 0.608335 | 4.3:+73676353 | MS.gene48962:CDS |
| AACCGAATTCCAAAACGCGA+TGG | 0.612279 | 4.3:+73667857 | MS.gene48962:CDS |
| TGCGGGTAGAGTGTTTGTAT+GGG | 0.627655 | 4.3:-73667817 | None:intergenic |
| TTTAGGAAAGAAATTTACGC+GGG | 0.630200 | 4.3:-73667759 | None:intergenic |
| GTTTGCTGTAGGTTCCAATG+AGG | 0.630568 | 4.3:+73675161 | MS.gene48962:intron |
| GGTGTGAACGAGCAATTCAG+TGG | 0.634788 | 4.3:+73675891 | MS.gene48962:CDS |
| GTGAACCGAAGAGAAGCTGC+GGG | 0.637811 | 4.3:-73667834 | None:intergenic |
| AGTCATATAAGCTTTATCAA+GGG | 0.646467 | 4.3:-73671058 | None:intergenic |
| AATAGATGATGCTATTGGTG+AGG | 0.648851 | 4.3:+73674888 | MS.gene48962:CDS |
| GTGTGAACGAGCAATTCAGT+GGG | 0.650776 | 4.3:+73675892 | MS.gene48962:CDS |
| GACCTGCTTGTGAAGTATGG+AGG | 0.654035 | 4.3:+73670338 | MS.gene48962:CDS |
| GTACCTGAGAAGATATCACT+TGG | 0.654321 | 4.3:-73668048 | None:intergenic |
| TGTGAACCGAAGAGAAGCTG+CGG | 0.659992 | 4.3:-73667835 | None:intergenic |
| CTTGATATAAGGAGAAGTGG+TGG | 0.665095 | 4.3:+73674940 | MS.gene48962:CDS |
| AAGGCTCGGAGAATTGCTGG+GGG | 0.666106 | 4.3:+73672359 | MS.gene48962:CDS |
| CGAAGGCAGAGACTTAAACC+CGG | 0.668882 | 4.3:-73671117 | None:intergenic |
| TGTATGGGAGATGGATTCGG+CGG | 0.689208 | 4.3:-73667802 | None:intergenic |
| CCATTGTCGGTACAAAGCCG+GGG | 0.692599 | 4.3:-73676135 | None:intergenic |
| GTTTAGGAAAGAAATTTACG+CGG | 0.696914 | 4.3:-73667760 | None:intergenic |
| ATAAAAGCTTACGATAGCGG+CGG | 0.697433 | 4.3:-73667924 | None:intergenic |
| TTGTCGGTACAAAGCCGGGG+AGG | 0.699082 | 4.3:-73676132 | None:intergenic |
| AGTATGATGTACGCCCAAGG+TGG | 0.716562 | 4.3:+73676718 | MS.gene48962:intron |
| AAGTTCGAGTATTACCACGA+AGG | 0.736459 | 4.3:-73671134 | None:intergenic |
| TGTTGGCGTCCATCACATGG+AGG | 0.747158 | 4.3:+73672397 | MS.gene48962:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 73667740 | 73676848 | 73667740 | ID=MS.gene48962 |
| chr4.3 | mRNA | 73667740 | 73676848 | 73667740 | ID=MS.gene48962.t1;Parent=MS.gene48962 |
| chr4.3 | exon | 73667740 | 73667934 | 73667740 | ID=MS.gene48962.t1.exon1;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73667740 | 73667934 | 73667740 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73668022 | 73668066 | 73668022 | ID=MS.gene48962.t1.exon2;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73668022 | 73668066 | 73668022 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73670335 | 73670409 | 73670335 | ID=MS.gene48962.t1.exon3;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73670335 | 73670409 | 73670335 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73671045 | 73671141 | 73671045 | ID=MS.gene48962.t1.exon4;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73671045 | 73671141 | 73671045 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73672348 | 73672438 | 73672348 | ID=MS.gene48962.t1.exon5;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73672348 | 73672438 | 73672348 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73672911 | 73672960 | 73672911 | ID=MS.gene48962.t1.exon6;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73672911 | 73672960 | 73672911 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73674827 | 73675017 | 73674827 | ID=MS.gene48962.t1.exon7;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73674827 | 73675017 | 73674827 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73675172 | 73675257 | 73675172 | ID=MS.gene48962.t1.exon8;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73675172 | 73675257 | 73675172 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73675648 | 73675723 | 73675648 | ID=MS.gene48962.t1.exon9;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73675648 | 73675723 | 73675648 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73675863 | 73675946 | 73675863 | ID=MS.gene48962.t1.exon10;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73675863 | 73675946 | 73675863 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73676042 | 73676156 | 73676042 | ID=MS.gene48962.t1.exon11;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73676042 | 73676156 | 73676042 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73676333 | 73676421 | 73676333 | ID=MS.gene48962.t1.exon12;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73676333 | 73676421 | 73676333 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| chr4.3 | exon | 73676720 | 73676848 | 73676720 | ID=MS.gene48962.t1.exon13;Parent=MS.gene48962.t1 |
| chr4.3 | CDS | 73676720 | 73676848 | 73676720 | ID=cds.MS.gene48962.t1;Parent=MS.gene48962.t1 |
| Gene Sequence |
| Protein sequence |
