Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59138.t1 | XP_013466516.1 | 94.1 | 236 | 13 | 1 | 1 | 235 | 1 | 236 | 4.00E-97 | 364.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59138.t1 | A0A072VFH3 | 94.1 | 236 | 13 | 1 | 1 | 235 | 1 | 236 | 2.9e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene59138 | 0.851766 | 7.17E-61 | -1.69E-46 |
| MS.gene049173 | MS.gene59138 | 0.87111 | 8.77E-67 | -1.69E-46 |
| MS.gene049217 | MS.gene59138 | 0.847934 | 8.44E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene59138 | 0.850684 | 1.45E-60 | -1.69E-46 |
| MS.gene049281 | MS.gene59138 | -0.811226 | 7.78E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene59138 | 0.894588 | 2.14E-75 | -1.69E-46 |
| MS.gene049320 | MS.gene59138 | 0.881966 | 1.55E-70 | -1.69E-46 |
| MS.gene049609 | MS.gene59138 | 0.800327 | 1.52E-48 | -1.69E-46 |
| MS.gene049627 | MS.gene59138 | 0.861048 | 1.35E-63 | -1.69E-46 |
| MS.gene05010 | MS.gene59138 | 0.811434 | 7.01E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene59138 | 0.91378 | 4.14E-84 | -1.69E-46 |
| MS.gene050165 | MS.gene59138 | 0.911071 | 9.20E-83 | -1.69E-46 |
| MS.gene050333 | MS.gene59138 | 0.896803 | 2.60E-76 | -1.69E-46 |
| MS.gene050353 | MS.gene59138 | -0.812721 | 3.68E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene59138 | 0.875679 | 2.55E-68 | -1.69E-46 |
| MS.gene050518 | MS.gene59138 | 0.839448 | 1.57E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene59138 | 0.819093 | 1.39E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene59138 | 0.869364 | 3.27E-66 | -1.69E-46 |
| MS.gene050675 | MS.gene59138 | 0.834517 | 2.86E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene59138 | 0.841429 | 4.78E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene59138 | 0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene59138 | 0.81874 | 1.67E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene59138 | 0.821104 | 4.82E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene59138 | 0.847561 | 1.07E-59 | -1.69E-46 |
| MS.gene050832 | MS.gene59138 | -0.817809 | 2.72E-52 | -1.69E-46 |
| MS.gene050833 | MS.gene59138 | -0.817206 | 3.72E-52 | -1.69E-46 |
| MS.gene050876 | MS.gene59138 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene05087 | MS.gene59138 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene59138 | 0.801608 | 8.31E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene59138 | 0.842834 | 2.03E-58 | -1.69E-46 |
| MS.gene05100 | MS.gene59138 | 0.901173 | 3.50E-78 | -1.69E-46 |
| MS.gene051228 | MS.gene59138 | 0.825654 | 4.17E-54 | -1.69E-46 |
| MS.gene051434 | MS.gene59138 | 0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene59138 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene051564 | MS.gene59138 | 0.838744 | 2.40E-57 | -1.69E-46 |
| MS.gene051566 | MS.gene59138 | 0.833442 | 5.32E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene59138 | 0.829718 | 4.40E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene59138 | 0.867523 | 1.29E-65 | -1.69E-46 |
| MS.gene051858 | MS.gene59138 | 0.826609 | 2.47E-54 | -1.69E-46 |
| MS.gene051949 | MS.gene59138 | 0.879877 | 8.70E-70 | -1.69E-46 |
| MS.gene052164 | MS.gene59138 | 0.832982 | 6.93E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene59138 | 0.845636 | 3.59E-59 | -1.69E-46 |
| MS.gene052379 | MS.gene59138 | 0.818808 | 1.62E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene59138 | 0.809467 | 1.87E-50 | -1.69E-46 |
| MS.gene052670 | MS.gene59138 | 0.827651 | 1.39E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene59138 | 0.853703 | 2.01E-61 | -1.69E-46 |
| MS.gene052966 | MS.gene59138 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene59138 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene59138 | 0.802959 | 4.38E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene59138 | 0.860503 | 1.97E-63 | -1.69E-46 |
| MS.gene053286 | MS.gene59138 | 0.862121 | 6.34E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene59138 | 0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene59138 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene59138 | 0.825762 | 3.93E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene59138 | 0.855223 | 7.29E-62 | -1.69E-46 |
| MS.gene054616 | MS.gene59138 | -0.81999 | 8.69E-53 | -1.69E-46 |
| MS.gene054642 | MS.gene59138 | 0.896001 | 5.61E-76 | -1.69E-46 |
| MS.gene05470 | MS.gene59138 | 0.811647 | 6.31E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene59138 | 0.871136 | 8.60E-67 | -1.69E-46 |
| MS.gene054959 | MS.gene59138 | -0.808695 | 2.73E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene59138 | -0.805594 | 1.24E-49 | -1.69E-46 |
| MS.gene055212 | MS.gene59138 | 0.834592 | 2.74E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene59138 | 0.89101 | 5.86E-74 | -1.69E-46 |
| MS.gene055397 | MS.gene59138 | 0.819457 | 1.15E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene59138 | 0.846366 | 2.27E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene59138 | 0.855665 | 5.42E-62 | -1.69E-46 |
| MS.gene055577 | MS.gene59138 | 0.836194 | 1.08E-56 | -1.69E-46 |
| MS.gene055634 | MS.gene59138 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene59138 | 0.826132 | 3.21E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene59138 | 0.84901 | 4.25E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene59138 | 0.828937 | 6.81E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene59138 | 0.80953 | 1.81E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene59138 | 0.835389 | 1.73E-56 | -1.69E-46 |
| MS.gene055776 | MS.gene59138 | 0.81778 | 2.76E-52 | -1.69E-46 |
| MS.gene055956 | MS.gene59138 | -0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene59138 | 0.849892 | 2.42E-60 | -1.69E-46 |
| MS.gene056374 | MS.gene59138 | 0.852625 | 4.08E-61 | -1.69E-46 |
| MS.gene056409 | MS.gene59138 | 0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene59138 | 0.831862 | 1.31E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene59138 | 0.827078 | 1.91E-54 | -1.69E-46 |
| MS.gene056549 | MS.gene59138 | 0.821011 | 5.06E-53 | -1.69E-46 |
| MS.gene056550 | MS.gene59138 | -0.80056 | 1.36E-48 | -1.69E-46 |
| MS.gene056657 | MS.gene59138 | 0.889524 | 2.24E-73 | -1.69E-46 |
| MS.gene056692 | MS.gene59138 | 0.862838 | 3.82E-64 | -1.69E-46 |
| MS.gene057129 | MS.gene59138 | 0.842765 | 2.12E-58 | -1.69E-46 |
| MS.gene057246 | MS.gene59138 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene59138 | 0.813252 | 2.81E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene59138 | 0.824519 | 7.73E-54 | -1.69E-46 |
| MS.gene057986 | MS.gene59138 | 0.808793 | 2.60E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene59138 | 0.803187 | 3.93E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene59138 | 0.875706 | 2.49E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene59138 | 0.831592 | 1.53E-55 | -1.69E-46 |
| MS.gene058723 | MS.gene59138 | 0.845834 | 3.17E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene59138 | 0.867768 | 1.07E-65 | -1.69E-46 |
| MS.gene058838 | MS.gene59138 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene59138 | 0.892285 | 1.83E-74 | -1.69E-46 |
| MS.gene059023 | MS.gene59138 | 0.818223 | 2.19E-52 | -1.69E-46 |
| MS.gene059029 | MS.gene59138 | 0.843743 | 1.16E-58 | -1.69E-46 |
| MS.gene05912 | MS.gene59138 | 0.815791 | 7.72E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene59138 | 0.823835 | 1.12E-53 | -1.69E-46 |
| MS.gene059479 | MS.gene59138 | -0.810113 | 1.35E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene59138 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene59138 | 0.89208 | 2.21E-74 | -1.69E-46 |
| MS.gene059718 | MS.gene59138 | 0.866528 | 2.67E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene59138 | 0.806461 | 8.13E-50 | -1.69E-46 |
| MS.gene059801 | MS.gene59138 | 0.83617 | 1.09E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene59138 | 0.839953 | 1.16E-57 | -1.69E-46 |
| MS.gene059902 | MS.gene59138 | 0.826721 | 2.32E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene59138 | 0.822216 | 2.67E-53 | -1.69E-46 |
| MS.gene060337 | MS.gene59138 | -0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene59138 | 0.883753 | 3.43E-71 | -1.69E-46 |
| MS.gene060762 | MS.gene59138 | 0.858747 | 6.66E-63 | -1.69E-46 |
| MS.gene06077 | MS.gene59138 | 0.845424 | 4.10E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene59138 | 0.810372 | 1.19E-50 | -1.69E-46 |
| MS.gene06105 | MS.gene59138 | 0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene59138 | 0.882121 | 1.36E-70 | -1.69E-46 |
| MS.gene061171 | MS.gene59138 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene59138 | 0.84265 | 2.27E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59138.t1 | MTR_1g030860 | 89.831 | 236 | 23 | 1 | 1 | 235 | 1 | 236 | 5.61e-139 | 389 |
| MS.gene59138.t1 | MTR_1g030870 | 85.714 | 70 | 10 | 0 | 1 | 70 | 1 | 70 | 8.99e-36 | 122 |
| MS.gene59138.t1 | MTR_8g077030 | 36.979 | 192 | 104 | 4 | 47 | 235 | 348 | 525 | 2.31e-18 | 84.0 |
| MS.gene59138.t1 | MTR_6g012760 | 35.938 | 192 | 104 | 5 | 47 | 235 | 80 | 255 | 6.55e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59138.t1 | AT2G43630 | 36.316 | 190 | 104 | 3 | 56 | 235 | 80 | 262 | 1.73e-31 | 117 |
Find 59 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCAATGGACAAATTTA+AGG | 0.142467 | 1.4:-15635673 | MS.gene59138:CDS |
| TAAGCGTATCATGGTAAAAT+TGG | 0.154842 | 1.4:-15634788 | MS.gene59138:CDS |
| ATCTGGTGCCTTACTCTTTC+TGG | 0.178984 | 1.4:-15635469 | MS.gene59138:intron |
| ATAAGAGATAAACCGTTATT+TGG | 0.220474 | 1.4:-15636802 | MS.gene59138:CDS |
| CCAGGAGGAGGAGGAGAAGG+TGG | 0.330061 | 1.4:-15635570 | MS.gene59138:CDS |
| CCATGTTGGGGTATTCAAAA+TGG | 0.340619 | 1.4:+15634705 | None:intergenic |
| CCTCTTCGTGCTGGTGGAAA+AGG | 0.365292 | 1.4:-15636763 | MS.gene59138:CDS |
| CAGGATCATACCACCATGTT+GGG | 0.367552 | 1.4:+15634692 | None:intergenic |
| CACCAGATGCGAAAATTGTT+TGG | 0.372513 | 1.4:+15635484 | None:intergenic |
| AATGCAATGGACAAATTTAA+GGG | 0.386519 | 1.4:-15635672 | MS.gene59138:CDS |
| CCACCTTCTCCTCCTCCTCC+TGG | 0.389125 | 1.4:+15635570 | None:intergenic |
| TAAACTCTTTCCCTCGGATT+CGG | 0.397008 | 1.4:-15636834 | MS.gene59138:CDS |
| TTACGGAAGCAAATTCAAAA+AGG | 0.403502 | 1.4:-15635630 | MS.gene59138:CDS |
| TTAAGGTTTATAGTTGGCTT+AGG | 0.406725 | 1.4:-15634826 | MS.gene59138:CDS |
| AGGAGGAGGAGGAGAAGGTG+GGG | 0.423587 | 1.4:-15635568 | MS.gene59138:CDS |
| GGTGGTGGTGGCAGTCCCAA+TGG | 0.428342 | 1.4:-15635546 | MS.gene59138:CDS |
| AAAGATTTCAATCCAAATAA+CGG | 0.429165 | 1.4:+15636790 | None:intergenic |
| GGTGGCAGTCCCAATGGCCC+TGG | 0.434107 | 1.4:-15635540 | MS.gene59138:CDS |
| AAGCGTATCATGGTAAAATT+GGG | 0.456666 | 1.4:-15634787 | MS.gene59138:CDS |
| GGAGGAGGAGGAGAAGGTGG+GGG | 0.460530 | 1.4:-15635567 | MS.gene59138:CDS |
| TATTTAGACAATGGTGGAAG+TGG | 0.463016 | 1.4:-15635603 | MS.gene59138:CDS |
| CAAGTTACAGCATTTCAACT+TGG | 0.466062 | 1.4:-15636904 | MS.gene59138:CDS |
| CCACCAGGAGGAGGAGGAGA+AGG | 0.467905 | 1.4:-15635573 | MS.gene59138:CDS |
| AATCAATAGAAGAAGTATTA+CGG | 0.472780 | 1.4:-15635647 | MS.gene59138:CDS |
| TCAGATCCACCAGGGCCATT+GGG | 0.486936 | 1.4:+15635531 | None:intergenic |
| TTGAAGCCTCTTCGTGCTGG+TGG | 0.489434 | 1.4:-15636769 | MS.gene59138:CDS |
| ATCAGATCCACCAGGGCCAT+TGG | 0.489944 | 1.4:+15635530 | None:intergenic |
| AGAGTGTACCAGAAAGAGTA+AGG | 0.496063 | 1.4:+15635461 | None:intergenic |
| GCTGGTGGAAAAGGAATGTC+AGG | 0.500826 | 1.4:-15636754 | MS.gene59138:CDS |
| GTAAAGCCACCAGGAGGAGG+AGG | 0.507231 | 1.4:-15635579 | MS.gene59138:CDS |
| TCTTTGAAGCCTCTTCGTGC+TGG | 0.511134 | 1.4:-15636772 | MS.gene59138:CDS |
| CATTTGTAATAGATTGCCAT+GGG | 0.513734 | 1.4:+15635691 | None:intergenic |
| CAGGAGGAGGAGGAGAAGGT+GGG | 0.514543 | 1.4:-15635569 | MS.gene59138:CDS |
| GGAGTAAAGCCACCAGGAGG+AGG | 0.524624 | 1.4:-15635582 | MS.gene59138:CDS |
| TCAGGATCATACCACCATGT+TGG | 0.534231 | 1.4:+15634691 | None:intergenic |
| GCATTTGTAATAGATTGCCA+TGG | 0.534840 | 1.4:+15635690 | None:intergenic |
| GTATTGTAAACTCTTTCCCT+CGG | 0.539120 | 1.4:-15636840 | MS.gene59138:CDS |
| GGCAGTCCCAATGGCCCTGG+TGG | 0.545700 | 1.4:-15635537 | MS.gene59138:CDS |
| GCAATCTATTACAAATGCAA+TGG | 0.555704 | 1.4:-15635685 | MS.gene59138:CDS |
| TAGTCGAATTAAGCGTATCA+TGG | 0.558198 | 1.4:-15634797 | MS.gene59138:CDS |
| TAAAATTGGGAAAATTGTAC+CGG | 0.563003 | 1.4:-15634774 | MS.gene59138:CDS |
| GGTGAGTATTTAGACAATGG+TGG | 0.570123 | 1.4:-15635609 | MS.gene59138:CDS |
| ACTGCTGTACGAAAATCCTC+AGG | 0.570351 | 1.4:+15634673 | None:intergenic |
| CCTTCTCCTCCTCCTCCTGG+TGG | 0.583094 | 1.4:+15635573 | None:intergenic |
| TCTTCATCATCAGATCCACC+AGG | 0.590752 | 1.4:+15635522 | None:intergenic |
| AAAGGTGAGTATTTAGACAA+TGG | 0.597947 | 1.4:-15635612 | MS.gene59138:CDS |
| TGCTAATATTCCGAATCCGA+GGG | 0.601925 | 1.4:+15636824 | None:intergenic |
| ATGCTAATATTCCGAATCCG+AGG | 0.602338 | 1.4:+15636823 | None:intergenic |
| TATCTATCTCATCATGAGCA+AGG | 0.607713 | 1.4:-15634875 | MS.gene59138:CDS |
| AACATGGTGGTATGATCCTG+AGG | 0.623546 | 1.4:-15634689 | MS.gene59138:CDS |
| GGAAGTGGAGTAAAGCCACC+AGG | 0.635749 | 1.4:-15635588 | MS.gene59138:CDS |
| AGGATCATACCACCATGTTG+GGG | 0.658146 | 1.4:+15634693 | None:intergenic |
| AATGTCAGGAAATAGTGATG+AGG | 0.666768 | 1.4:-15636740 | MS.gene59138:intron |
| ATAATAATCAGAATTCCCCA+TGG | 0.676568 | 1.4:-15635707 | MS.gene59138:intron |
| TGTACCGGAGTACGAAACAG+AGG | 0.680091 | 1.4:-15634759 | MS.gene59138:CDS |
| GAATTACTATGCATCAGATG+CGG | 0.684768 | 1.4:-15634647 | MS.gene59138:CDS |
| CTTCATCATCAGATCCACCA+GGG | 0.689052 | 1.4:+15635523 | None:intergenic |
| AGTGGAGTAAAGCCACCAGG+AGG | 0.725114 | 1.4:-15635585 | MS.gene59138:CDS |
| ATTTGTAATAGATTGCCATG+GGG | 0.741669 | 1.4:+15635692 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTTTTTTCTTTTTAAA+TGG | - | chr1.4:15635408-15635427 | MS.gene59138:intron | 10.0% |
| !! | AAATTATAACTAAAAAGAAG+TGG | + | chr1.4:15634846-15634865 | None:intergenic | 15.0% |
| !!! | AAAAATTTTGATGTCAAATT+TGG | - | chr1.4:15636489-15636508 | MS.gene59138:intron | 15.0% |
| !!! | TAGTTAATGTTTTTGATTAA+TGG | - | chr1.4:15636255-15636274 | MS.gene59138:intron | 15.0% |
| !! | AAAGATTTCAATCCAAATAA+CGG | + | chr1.4:15634768-15634787 | None:intergenic | 20.0% |
| !!! | AATCAATAGAAGAAGTATTA+CGG | - | chr1.4:15635908-15635927 | MS.gene59138:intron | 20.0% |
| !!! | AATTTTGCTTGTTATTATTG+AGG | - | chr1.4:15634861-15634880 | MS.gene59138:CDS | 20.0% |
| !!! | ATTTTGCTTGTTATTATTGA+GGG | - | chr1.4:15634862-15634881 | MS.gene59138:CDS | 20.0% |
| !!! | ATTTTTATAATAGACAACCT+AGG | - | chr1.4:15635588-15635607 | MS.gene59138:CDS | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | - | chr1.4:15635373-15635392 | MS.gene59138:intron | 20.0% |
| !!! | TTTTATCTAAAGATGCATTT+AGG | - | chr1.4:15635102-15635121 | MS.gene59138:intron | 20.0% |
| !!! | TTTTTATAATAGACAACCTA+GGG | - | chr1.4:15635589-15635608 | MS.gene59138:CDS | 20.0% |
| ! | AAATGCAATGGACAAATTTA+AGG | - | chr1.4:15635882-15635901 | MS.gene59138:intron | 25.0% |
| ! | AATGCAATGGACAAATTTAA+GGG | - | chr1.4:15635883-15635902 | MS.gene59138:intron | 25.0% |
| ! | ATAAGAGATAAACCGTTATT+TGG | - | chr1.4:15634753-15634772 | MS.gene59138:CDS | 25.0% |
| ! | ATAATTTCTCTTCAGAAATG+AGG | + | chr1.4:15636459-15636478 | None:intergenic | 25.0% |
| ! | CTGTAGTACAAATATTGAAA+GGG | - | chr1.4:15635561-15635580 | MS.gene59138:CDS | 25.0% |
| ! | TAAAATTGGGAAAATTGTAC+CGG | - | chr1.4:15636781-15636800 | MS.gene59138:CDS | 25.0% |
| ! | TCTGTAGTACAAATATTGAA+AGG | - | chr1.4:15635560-15635579 | MS.gene59138:CDS | 25.0% |
| !!! | GAATCATGTTATTTCTCAAT+CGG | - | chr1.4:15634966-15634985 | MS.gene59138:intron | 25.0% |
| !!! | GACTTTTTAAGGTTTATAGT+TGG | - | chr1.4:15636723-15636742 | MS.gene59138:intron | 25.0% |
| !!! | GCACAATTTTTGACTTTTTA+AGG | - | chr1.4:15636712-15636731 | MS.gene59138:intron | 25.0% |
| !!! | GGTTATTTTAGTTTATCTAC+TGG | - | chr1.4:15635139-15635158 | MS.gene59138:intron | 25.0% |
| !!! | TAACAGAGTTGATAGAATAT+AGG | - | chr1.4:15636428-15636447 | MS.gene59138:intron | 25.0% |
| !!! | TATACAAACAAGGTCTTATT+AGG | - | chr1.4:15635383-15635402 | MS.gene59138:intron | 25.0% |
| !!! | TCTGAATTTTGAAAACTCAA+AGG | - | chr1.4:15636194-15636213 | MS.gene59138:intron | 25.0% |
| !!! | TTGTTTGGTTTTTAAAACGT+TGG | - | chr1.4:15635769-15635788 | MS.gene59138:intron | 25.0% |
| AAAGGTGAGTATTTAGACAA+TGG | - | chr1.4:15635943-15635962 | MS.gene59138:intron | 30.0% | |
| AACTCTGTTAATCATGTCAA+GGG | + | chr1.4:15636418-15636437 | None:intergenic | 30.0% | |
| AAGCGTATCATGGTAAAATT+GGG | - | chr1.4:15636768-15636787 | MS.gene59138:CDS | 30.0% | |
| ACAAAATCAGACAGTTCAAT+TGG | + | chr1.4:15635753-15635772 | None:intergenic | 30.0% | |
| ACTCAAAGGAGAAAGTTAAA+TGG | - | chr1.4:15636208-15636227 | MS.gene59138:intron | 30.0% | |
| AGAATTTCCTAATAAGACCT+GGG | + | chr1.4:15635393-15635412 | None:intergenic | 30.0% | |
| ATAATAATCAGAATTCCCCA+TGG | - | chr1.4:15635848-15635867 | MS.gene59138:intron | 30.0% | |
| ATTTGTAATAGATTGCCATG+GGG | + | chr1.4:15635866-15635885 | None:intergenic | 30.0% | |
| CATTTGTAATAGATTGCCAT+GGG | + | chr1.4:15635867-15635886 | None:intergenic | 30.0% | |
| GCAATCTATTACAAATGCAA+TGG | - | chr1.4:15635870-15635889 | MS.gene59138:intron | 30.0% | |
| GTTTGAGCATTAAGAAATAG+TGG | + | chr1.4:15636640-15636659 | None:intergenic | 30.0% | |
| TAAGCGTATCATGGTAAAAT+TGG | - | chr1.4:15636767-15636786 | MS.gene59138:CDS | 30.0% | |
| TCAAAAGTCTTCTCATATAC+CGG | + | chr1.4:15636355-15636374 | None:intergenic | 30.0% | |
| TCATGATGAGATAGATATAC+TGG | + | chr1.4:15636677-15636696 | None:intergenic | 30.0% | |
| TTACGGAAGCAAATTCAAAA+AGG | - | chr1.4:15635925-15635944 | MS.gene59138:intron | 30.0% | |
| ! | GTACTACTGTTCAGTTATTT+TGG | + | chr1.4:15635731-15635750 | None:intergenic | 30.0% |
| ! | TTAAGGTTTATAGTTGGCTT+AGG | - | chr1.4:15636729-15636748 | MS.gene59138:intron | 30.0% |
| ! | TTGAACTGTCTGATTTTGTT+TGG | - | chr1.4:15635754-15635773 | MS.gene59138:intron | 30.0% |
| !! | AACTATAACCCTTTTTAGCA+TGG | + | chr1.4:15636240-15636259 | None:intergenic | 30.0% |
| !! | ATTTAGGACTGGTTTAGATT+GGG | - | chr1.4:15635118-15635137 | MS.gene59138:intron | 30.0% |
| AAAACATTGTTGCATACCCT+AGG | + | chr1.4:15635608-15635627 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTGTTT+GGG | - | chr1.4:15635165-15635184 | MS.gene59138:intron | 35.0% | |
| AATGTCAGGAAATAGTGATG+AGG | - | chr1.4:15634815-15634834 | MS.gene59138:CDS | 35.0% | |
| AATTTCCTAATAAGACCTGG+GGG | + | chr1.4:15635541-15635560 | None:intergenic | 35.0% | |
| CAACTCTGTTAATCATGTCA+AGG | + | chr1.4:15636419-15636438 | None:intergenic | 35.0% | |
| CAAGTTACAGCATTTCAACT+TGG | - | chr1.4:15634651-15634670 | MS.gene59138:CDS | 35.0% | |
| CAGAATTTCCTAATAAGACC+TGG | + | chr1.4:15635544-15635563 | None:intergenic | 35.0% | |
| CGGTATATGTGTAGTATATG+TGG | - | chr1.4:15636126-15636145 | MS.gene59138:intron | 35.0% | |
| GAATTACTATGCATCAGATG+CGG | - | chr1.4:15636908-15636927 | MS.gene59138:CDS | 35.0% | |
| GAATTTCCTAATAAGACCTG+GGG | + | chr1.4:15635542-15635561 | None:intergenic | 35.0% | |
| GCATTTGTAATAGATTGCCA+TGG | + | chr1.4:15635868-15635887 | None:intergenic | 35.0% | |
| GGACAAGTAAATTACTCATC+TGG | - | chr1.4:15636147-15636166 | MS.gene59138:intron | 35.0% | |
| GTATTGTAAACTCTTTCCCT+CGG | - | chr1.4:15634715-15634734 | MS.gene59138:CDS | 35.0% | |
| TAAGCACTTGTGAGATTGTT+TGG | - | chr1.4:15635164-15635183 | MS.gene59138:intron | 35.0% | |
| TAATATTTACTCCTTCGTCC+TGG | - | chr1.4:15635457-15635476 | MS.gene59138:intron | 35.0% | |
| TAGTCGAATTAAGCGTATCA+TGG | - | chr1.4:15636758-15636777 | MS.gene59138:CDS | 35.0% | |
| TATCTATCTCATCATGAGCA+AGG | - | chr1.4:15636680-15636699 | MS.gene59138:intron | 35.0% | |
| TTCTCTTCAGAAATGAGGAA+TGG | + | chr1.4:15636454-15636473 | None:intergenic | 35.0% | |
| ! | AATCACTGATGAGCACTTTT+TGG | - | chr1.4:15636821-15636840 | MS.gene59138:CDS | 35.0% |
| ! | TATGAGAAGACTTTTGAGCA+TGG | - | chr1.4:15636358-15636377 | MS.gene59138:intron | 35.0% |
| ! | TATTTAGACAATGGTGGAAG+TGG | - | chr1.4:15635952-15635971 | MS.gene59138:intron | 35.0% |
| ! | TCTAAAGATGCATTTAGGAC+TGG | - | chr1.4:15635107-15635126 | MS.gene59138:intron | 35.0% |
| !! | CATTTAGGACTGGTTTAGAT+TGG | - | chr1.4:15635117-15635136 | MS.gene59138:intron | 35.0% |
| !! | GTTGTTTTCATCAGCTACAA+TGG | + | chr1.4:15635248-15635267 | None:intergenic | 35.0% |
| !!! | CTACTGTTCAGTTATTTTGG+CGG | + | chr1.4:15635728-15635747 | None:intergenic | 35.0% |
| AAGTCTTCTCATATACCGGA+AGG | + | chr1.4:15636351-15636370 | None:intergenic | 40.0% | |
| AGAGTGTACCAGAAAGAGTA+AGG | + | chr1.4:15636097-15636116 | None:intergenic | 40.0% | |
| ATGCTAATATTCCGAATCCG+AGG | + | chr1.4:15634735-15634754 | None:intergenic | 40.0% | |
| CACCAGATGCGAAAATTGTT+TGG | + | chr1.4:15636074-15636093 | None:intergenic | 40.0% | |
| CCTCTGACACTTCTAATTGA+TGG | - | chr1.4:15634901-15634920 | MS.gene59138:intron | 40.0% | |
| GCAATTGAACCATTACTCAG+AGG | + | chr1.4:15635661-15635680 | None:intergenic | 40.0% | |
| GCTAACTATTGAAGTCCTTC+CGG | - | chr1.4:15636333-15636352 | MS.gene59138:intron | 40.0% | |
| GGAAGTAGCCATGCTAAAAA+GGG | - | chr1.4:15636229-15636248 | MS.gene59138:intron | 40.0% | |
| GGTGAGTATTTAGACAATGG+TGG | - | chr1.4:15635946-15635965 | MS.gene59138:intron | 40.0% | |
| TAAACTCTTTCCCTCGGATT+CGG | - | chr1.4:15634721-15634740 | MS.gene59138:CDS | 40.0% | |
| TGCTAATATTCCGAATCCGA+GGG | + | chr1.4:15634734-15634753 | None:intergenic | 40.0% | |
| TGGAAGTAGCCATGCTAAAA+AGG | - | chr1.4:15636228-15636247 | MS.gene59138:intron | 40.0% | |
| TGGTACACTCTCTTTCTCTT+CGG | - | chr1.4:15636106-15636125 | MS.gene59138:intron | 40.0% | |
| TTGTGAGATTGTTTGGGAGA+AGG | - | chr1.4:15635171-15635190 | MS.gene59138:intron | 40.0% | |
| ! | CCATGTTGGGGTATTCAAAA+TGG | + | chr1.4:15636853-15636872 | None:intergenic | 40.0% |
| ! | CCATTTTGAATACCCCAACA+TGG | - | chr1.4:15636850-15636869 | MS.gene59138:CDS | 40.0% |
| ! | TTTTCCTCTGTTTCGTACTC+CGG | + | chr1.4:15636803-15636822 | None:intergenic | 40.0% |
| ! | TTTTGAATACCCCAACATGG+TGG | - | chr1.4:15636853-15636872 | MS.gene59138:CDS | 40.0% |
| !! | CCATCAATTAGAAGTGTCAG+AGG | + | chr1.4:15634904-15634923 | None:intergenic | 40.0% |
| !! | TGATGAGCACTTTTTGGAGA+AGG | - | chr1.4:15636827-15636846 | MS.gene59138:CDS | 40.0% |
| AACATGGTGGTATGATCCTG+AGG | - | chr1.4:15636866-15636885 | MS.gene59138:CDS | 45.0% | |
| ACTGCTGTACGAAAATCCTC+AGG | + | chr1.4:15636885-15636904 | None:intergenic | 45.0% | |
| AGGATCATACCACCATGTTG+GGG | + | chr1.4:15636865-15636884 | None:intergenic | 45.0% | |
| ATCTGGTGCCTTACTCTTTC+TGG | - | chr1.4:15636086-15636105 | MS.gene59138:intron | 45.0% | |
| CAGGATCATACCACCATGTT+GGG | + | chr1.4:15636866-15636885 | None:intergenic | 45.0% | |
| CTTCATCATCAGATCCACCA+GGG | + | chr1.4:15636035-15636054 | None:intergenic | 45.0% | |
| GATAAGCAGTTGAAGGTCCT+GGG | + | chr1.4:15635489-15635508 | None:intergenic | 45.0% | |
| GCTAAGGGATAAGCAGTTGA+AGG | + | chr1.4:15635496-15635515 | None:intergenic | 45.0% | |
| GTGTTGTGTTCGTGCTTCAT+AGG | - | chr1.4:15635030-15635049 | MS.gene59138:intron | 45.0% | |
| TCAGGATCATACCACCATGT+TGG | + | chr1.4:15636867-15636886 | None:intergenic | 45.0% | |
| TCTCCAGTTCAACTTCTGGT+CGG | + | chr1.4:15635636-15635655 | None:intergenic | 45.0% | |
| TCTTCATCATCAGATCCACC+AGG | + | chr1.4:15636036-15636055 | None:intergenic | 45.0% | |
| ! | CGCCAAACAATTTTCGCATC+TGG | - | chr1.4:15636069-15636088 | MS.gene59138:intron | 45.0% |
| !! | AGCTCAACTGGTTTGAGCTA+AGG | + | chr1.4:15635512-15635531 | None:intergenic | 45.0% |
| !! | GCTCAACTGGTTTGAGCTAA+GGG | + | chr1.4:15635511-15635530 | None:intergenic | 45.0% |
| CCTAATAAGACCTGGGGGTT+GGG | + | chr1.4:15635536-15635555 | None:intergenic | 50.0% | |
| CTGGAGAGACCTCTGAGTAA+TGG | - | chr1.4:15635649-15635668 | MS.gene59138:CDS | 50.0% | |
| GAACCGACCAGAAGTTGAAC+TGG | - | chr1.4:15635630-15635649 | MS.gene59138:CDS | 50.0% | |
| GCTGGTGGAAAAGGAATGTC+AGG | - | chr1.4:15634801-15634820 | MS.gene59138:CDS | 50.0% | |
| GGATAAGCAGTTGAAGGTCC+TGG | + | chr1.4:15635490-15635509 | None:intergenic | 50.0% | |
| GGTCTCTCCAGTTCAACTTC+TGG | + | chr1.4:15635640-15635659 | None:intergenic | 50.0% | |
| TCCTAATAAGACCTGGGGGT+TGG | + | chr1.4:15635537-15635556 | None:intergenic | 50.0% | |
| TGTACCGGAGTACGAAACAG+AGG | - | chr1.4:15636796-15636815 | MS.gene59138:CDS | 50.0% | |
| !! | TCTTTGAAGCCTCTTCGTGC+TGG | - | chr1.4:15634783-15634802 | MS.gene59138:CDS | 50.0% |
| AGTGGAGTAAAGCCACCAGG+AGG | - | chr1.4:15635970-15635989 | MS.gene59138:intron | 55.0% | |
| ATCAGATCCACCAGGGCCAT+TGG | + | chr1.4:15636028-15636047 | None:intergenic | 55.0% | |
| GGAAGTGGAGTAAAGCCACC+AGG | - | chr1.4:15635967-15635986 | MS.gene59138:intron | 55.0% | |
| TCAGATCCACCAGGGCCATT+GGG | + | chr1.4:15636027-15636046 | None:intergenic | 55.0% | |
| TTGAAGCCTCTTCGTGCTGG+TGG | - | chr1.4:15634786-15634805 | MS.gene59138:CDS | 55.0% | |
| ! | CCTCTTCGTGCTGGTGGAAA+AGG | - | chr1.4:15634792-15634811 | MS.gene59138:CDS | 55.0% |
| ! | CCTTTTCCACCAGCACGAAG+AGG | + | chr1.4:15634795-15634814 | None:intergenic | 55.0% |
| !! | CCCAACCCCCAGGTCTTATT+AGG | - | chr1.4:15635533-15635552 | MS.gene59138:CDS | 55.0% |
| AGGAGGAGGAGGAGAAGGTG+GGG | - | chr1.4:15635987-15636006 | MS.gene59138:intron | 60.0% | |
| AGTTGAGCTACCCAACCCCC+AGG | - | chr1.4:15635523-15635542 | MS.gene59138:CDS | 60.0% | |
| CAGGAGGAGGAGGAGAAGGT+GGG | - | chr1.4:15635986-15636005 | MS.gene59138:intron | 60.0% | |
| CTGGGCTCAAACCAGGACGA+AGG | + | chr1.4:15635471-15635490 | None:intergenic | 60.0% | |
| GAAGGTCCTGGGCTCAAACC+AGG | + | chr1.4:15635478-15635497 | None:intergenic | 60.0% | |
| GGAGTAAAGCCACCAGGAGG+AGG | - | chr1.4:15635973-15635992 | MS.gene59138:intron | 60.0% | |
| GTAAAGCCACCAGGAGGAGG+AGG | - | chr1.4:15635976-15635995 | MS.gene59138:intron | 60.0% | |
| TGGGGGTTGGGTAGCTCAAC+TGG | + | chr1.4:15635524-15635543 | None:intergenic | 60.0% | |
| ! | CTTCGTCCTGGTTTGAGCCC+AGG | - | chr1.4:15635469-15635488 | MS.gene59138:intron | 60.0% |
| CCACCAGGAGGAGGAGGAGA+AGG | - | chr1.4:15635982-15636001 | MS.gene59138:intron | 65.0% | |
| CCACCTTCTCCTCCTCCTCC+TGG | + | chr1.4:15635988-15636007 | None:intergenic | 65.0% | |
| CCAGGAGGAGGAGGAGAAGG+TGG | - | chr1.4:15635985-15636004 | MS.gene59138:intron | 65.0% | |
| CCTTCTCCTCCTCCTCCTGG+TGG | + | chr1.4:15635985-15636004 | None:intergenic | 65.0% | |
| GGAGGAGGAGGAGAAGGTGG+GGG | - | chr1.4:15635988-15636007 | MS.gene59138:intron | 65.0% | |
| !! | GGTGGTGGTGGCAGTCCCAA+TGG | - | chr1.4:15636009-15636028 | MS.gene59138:intron | 65.0% |
| GGAGGAGAAGGTGGGGGTGG+TGG | - | chr1.4:15635994-15636013 | MS.gene59138:intron | 70.0% | |
| GGAGGAGGAGAAGGTGGGGG+TGG | - | chr1.4:15635991-15636010 | MS.gene59138:intron | 70.0% | |
| GGCAGTCCCAATGGCCCTGG+TGG | - | chr1.4:15636018-15636037 | MS.gene59138:intron | 70.0% | |
| GGTGGCAGTCCCAATGGCCC+TGG | - | chr1.4:15636015-15636034 | MS.gene59138:intron | 70.0% | |
| ! | GGAGAAGGTGGGGGTGGTGG+TGG | - | chr1.4:15635997-15636016 | MS.gene59138:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 15634639 | 15636938 | 15634639 | ID=MS.gene59138 |
| chr1.4 | mRNA | 15634639 | 15636938 | 15634639 | ID=MS.gene59138.t1;Parent=MS.gene59138 |
| chr1.4 | exon | 15636741 | 15636938 | 15636741 | ID=MS.gene59138.t1.exon1;Parent=MS.gene59138.t1 |
| chr1.4 | CDS | 15636741 | 15636938 | 15636741 | ID=cds.MS.gene59138.t1;Parent=MS.gene59138.t1 |
| chr1.4 | exon | 15635470 | 15635718 | 15635470 | ID=MS.gene59138.t1.exon2;Parent=MS.gene59138.t1 |
| chr1.4 | CDS | 15635470 | 15635718 | 15635470 | ID=cds.MS.gene59138.t1;Parent=MS.gene59138.t1 |
| chr1.4 | exon | 15634639 | 15634899 | 15634639 | ID=MS.gene59138.t1.exon3;Parent=MS.gene59138.t1 |
| chr1.4 | CDS | 15634639 | 15634899 | 15634639 | ID=cds.MS.gene59138.t1;Parent=MS.gene59138.t1 |
| Gene Sequence |
| Protein sequence |
