Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92938.t1 | PNY07457.1 | 86.2 | 660 | 79 | 4 | 3 | 651 | 4 | 662 | 0.00E+00 | 1095.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92938.t1 | Q5UNY4 | 34.7 | 372 | 207 | 9 | 274 | 626 | 135 | 489 | 5.3e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92938.t1 | A0A2K3NWP3 | 86.2 | 660 | 79 | 4 | 3 | 651 | 4 | 662 | 0.0e+00 | 1095.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene92938 | -0.818032 | 2.42E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene92938 | -0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene92938 | -0.823817 | 1.13E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene92938 | -0.801389 | 9.22E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene92938 | -0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene92938 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene92938 | -0.802142 | 6.45E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene92938 | 0.80432 | 2.29E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene92938 | -0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene92938 | -0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene92938 | -0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene92938 | -0.819433 | 1.16E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene92938 | 0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene92938 | 0.838285 | 3.15E-57 | -1.69E-46 |
| MS.gene050496 | MS.gene92938 | -0.813966 | 1.96E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene92938 | -0.837617 | 4.68E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene92938 | -0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene92938 | -0.82683 | 2.19E-54 | -1.69E-46 |
| MS.gene050647 | MS.gene92938 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene92938 | -0.812661 | 3.79E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene92938 | -0.818885 | 1.55E-52 | -1.69E-46 |
| MS.gene050809 | MS.gene92938 | 0.81049 | 1.12E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene92938 | -0.808987 | 2.36E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene92938 | -0.841194 | 5.51E-58 | -1.69E-46 |
| MS.gene050871 | MS.gene92938 | -0.841948 | 3.49E-58 | -1.69E-46 |
| MS.gene050883 | MS.gene92938 | 0.805682 | 1.19E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene92938 | -0.811525 | 6.70E-51 | -1.69E-46 |
| MS.gene051044 | MS.gene92938 | 0.808654 | 2.78E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene92938 | 0.838059 | 3.60E-57 | -1.69E-46 |
| MS.gene051127 | MS.gene92938 | 0.834631 | 2.68E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene92938 | 0.814582 | 1.43E-51 | -1.69E-46 |
| MS.gene051167 | MS.gene92938 | 0.805678 | 1.19E-49 | -1.69E-46 |
| MS.gene05141 | MS.gene92938 | 0.814999 | 1.16E-51 | -1.69E-46 |
| MS.gene051632 | MS.gene92938 | 0.806896 | 6.59E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene92938 | -0.818314 | 2.09E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene92938 | -0.819756 | 9.83E-53 | -1.69E-46 |
| MS.gene051946 | MS.gene92938 | 0.817698 | 2.88E-52 | -1.69E-46 |
| MS.gene052015 | MS.gene92938 | 0.811711 | 6.11E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene92938 | -0.833763 | 4.42E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene92938 | 0.828543 | 8.48E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene92938 | -0.801586 | 8.39E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene92938 | 0.820755 | 5.80E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene92938 | -0.816557 | 5.20E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene92938 | -0.814003 | 1.92E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene92938 | -0.815415 | 9.35E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene92938 | -0.81764 | 2.97E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene92938 | -0.844468 | 7.42E-59 | -1.69E-46 |
| MS.gene053420 | MS.gene92938 | 0.829378 | 5.32E-55 | -1.69E-46 |
| MS.gene053421 | MS.gene92938 | 0.8338 | 4.33E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene92938 | -0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene92938 | -0.813243 | 2.82E-51 | -1.69E-46 |
| MS.gene053488 | MS.gene92938 | 0.800873 | 1.18E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene92938 | -0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene92938 | -0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene92938 | -0.830085 | 3.58E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene92938 | -0.803571 | 3.27E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene92938 | 0.885906 | 5.43E-72 | -1.69E-46 |
| MS.gene054707 | MS.gene92938 | 0.939522 | 1.10E-99 | -1.69E-46 |
| MS.gene054708 | MS.gene92938 | 0.85842 | 8.34E-63 | -1.69E-46 |
| MS.gene05470 | MS.gene92938 | -0.808738 | 2.67E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene92938 | 0.814881 | 1.23E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene92938 | -0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene92938 | 0.830605 | 2.67E-55 | -1.69E-46 |
| MS.gene055139 | MS.gene92938 | 0.815039 | 1.13E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene92938 | 0.826776 | 2.25E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene92938 | 0.83651 | 8.97E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene92938 | -0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene055289 | MS.gene92938 | -0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene92938 | -0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene92938 | -0.840489 | 8.43E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene92938 | -0.845539 | 3.81E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene92938 | -0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene92938 | -0.838217 | 3.28E-57 | -1.69E-46 |
| MS.gene056224 | MS.gene92938 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene92938 | 0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene92938 | -0.818337 | 2.07E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene92938 | -0.854019 | 1.63E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene92938 | -0.804048 | 2.60E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene92938 | 0.800139 | 1.66E-48 | -1.69E-46 |
| MS.gene057014 | MS.gene92938 | 0.818441 | 1.96E-52 | -1.69E-46 |
| MS.gene057086 | MS.gene92938 | -0.804536 | 2.06E-49 | -1.69E-46 |
| MS.gene058068 | MS.gene92938 | 0.811428 | 7.04E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene92938 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene92938 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene92938 | -0.84197 | 3.44E-58 | -1.69E-46 |
| MS.gene058171 | MS.gene92938 | 0.852976 | 3.24E-61 | -1.69E-46 |
| MS.gene058173 | MS.gene92938 | 0.846211 | 2.51E-59 | -1.69E-46 |
| MS.gene058175 | MS.gene92938 | 0.85484 | 9.42E-62 | -1.69E-46 |
| MS.gene058334 | MS.gene92938 | 0.801221 | 9.97E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene92938 | -0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene92938 | -0.846342 | 2.31E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene92938 | -0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene92938 | -0.825867 | 3.71E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene92938 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene92938 | -0.804321 | 2.28E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene92938 | -0.81696 | 4.22E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene92938 | -0.824944 | 6.13E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene92938 | -0.817395 | 3.37E-52 | -1.69E-46 |
| MS.gene059045 | MS.gene92938 | 0.804936 | 1.70E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene92938 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene92938 | -0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene92938 | -0.809702 | 1.66E-50 | -1.69E-46 |
| MS.gene059699 | MS.gene92938 | 0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene92938 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene92938 | -0.817185 | 3.76E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene92938 | -0.824699 | 7.01E-54 | -1.69E-46 |
| MS.gene060405 | MS.gene92938 | 0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene92938 | -0.817795 | 2.74E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene92938 | 0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene92938 | -0.830346 | 3.09E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene92938 | -0.823193 | 1.58E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene92938 | -0.829803 | 4.19E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene92938 | -0.823723 | 1.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92938.t1 | MTR_5g045160 | 88.789 | 669 | 52 | 4 | 1 | 651 | 1 | 664 | 0.0 | 1155 |
| MS.gene92938.t1 | MTR_6g445440 | 84.049 | 652 | 87 | 4 | 1 | 651 | 1 | 636 | 0.0 | 1095 |
| MS.gene92938.t1 | MTR_3g103410 | 71.210 | 719 | 122 | 5 | 3 | 651 | 4 | 707 | 0.0 | 1009 |
| MS.gene92938.t1 | MTR_5g045130 | 86.255 | 502 | 58 | 2 | 157 | 651 | 2 | 499 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92938.t1 | AT5G13210 | 58.884 | 681 | 242 | 6 | 1 | 651 | 1 | 673 | 0.0 | 810 |
| MS.gene92938.t1 | AT5G43400 | 57.122 | 681 | 236 | 9 | 1 | 651 | 1 | 655 | 0.0 | 773 |
| MS.gene92938.t1 | AT5G43390 | 55.621 | 676 | 237 | 9 | 2 | 651 | 5 | 643 | 0.0 | 739 |
| MS.gene92938.t1 | AT3G24780 | 57.990 | 607 | 200 | 5 | 55 | 616 | 107 | 703 | 0.0 | 724 |
Find 196 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGTGGTGAGTGGATTT+TGG | 0.203979 | 5.1:+33632962 | None:intergenic |
| ATCATGAAGAAACTTGAAAT+TGG | 0.206773 | 5.1:+33632480 | None:intergenic |
| TCATGAGATTATAGGGTCTT+TGG | 0.221619 | 5.1:-33632014 | MS.gene92938:CDS |
| GTGTTAGTGGTGGTAGGGTT+AGG | 0.222334 | 5.1:+33633207 | None:intergenic |
| GCCTCAGCTTCATGTGATTC+AGG | 0.257750 | 5.1:-33631777 | MS.gene92938:CDS |
| GAATCTGCTGACATTGTTCT+TGG | 0.268467 | 5.1:-33631414 | MS.gene92938:CDS |
| TTGCTTCCTCATGAGATTAT+AGG | 0.271882 | 5.1:-33632022 | MS.gene92938:CDS |
| AAATCAGTCTTGCTGCTAAA+TGG | 0.287484 | 5.1:-33632387 | MS.gene92938:CDS |
| TCAACCCCATCGATGGGTTT+TGG | 0.288529 | 5.1:+33633103 | None:intergenic |
| GATGTGTCTGGGAGCATGTC+TGG | 0.302383 | 5.1:-33631893 | MS.gene92938:CDS |
| GTCTGTGGCATTGGGGTTGT+TGG | 0.311302 | 5.1:-33631855 | MS.gene92938:CDS |
| ATATGCGATCAAACACCTTC+TGG | 0.312936 | 5.1:+33631690 | None:intergenic |
| GCTTCTACGCTGCCGCTCTA+TGG | 0.315868 | 5.1:-33632885 | MS.gene92938:CDS |
| GAATTGCCTGAGGTGTTTAT+TGG | 0.320710 | 5.1:-33632196 | MS.gene92938:CDS |
| ATGGAGGTGTCTGTGGCATT+GGG | 0.321729 | 5.1:-33631863 | MS.gene92938:CDS |
| TATGGAGGTGTCTGTGGCAT+TGG | 0.327031 | 5.1:-33631864 | MS.gene92938:CDS |
| CTTGCAGTGTGTGATGTGTC+TGG | 0.344032 | 5.1:-33631905 | MS.gene92938:CDS |
| GGGATTTGATTCCTTACAAT+AGG | 0.344162 | 5.1:-33632162 | MS.gene92938:CDS |
| GCCTTCTTTATCGGACTTAC+CGG | 0.351249 | 5.1:+33632906 | None:intergenic |
| TGCTTCCTCATGAGATTATA+GGG | 0.353445 | 5.1:-33632021 | MS.gene92938:CDS |
| CTGTGCCTCAGATAGTCTTT+TGG | 0.356529 | 5.1:-33631511 | MS.gene92938:CDS |
| CCATGGTTCCTCACTCAATT+CGG | 0.357198 | 5.1:+33631829 | None:intergenic |
| CATGAGATTATAGGGTCTTT+GGG | 0.360120 | 5.1:-33632013 | MS.gene92938:CDS |
| AGAAGACGGTAGAGGATCTC+AGG | 0.360575 | 5.1:+33632787 | None:intergenic |
| TGTTAGTGGTGGTAGGGTTA+GGG | 0.364081 | 5.1:+33633208 | None:intergenic |
| ATCAAGCGTCTGCAAACTCT+TGG | 0.365158 | 5.1:-33631589 | MS.gene92938:CDS |
| GACACAGTTCGTGAGGGATA+TGG | 0.369160 | 5.1:-33631735 | MS.gene92938:CDS |
| AGGAGGCGCATTATGCTTAT+AGG | 0.369882 | 5.1:-33632270 | MS.gene92938:CDS |
| TGTTTATTGGTTCTAATCAA+TGG | 0.370352 | 5.1:-33632183 | MS.gene92938:CDS |
| AGCGTAGAAGCCTTCTTTAT+CGG | 0.373596 | 5.1:+33632897 | None:intergenic |
| GTTGATGATTTGCTTAAGAA+AGG | 0.386144 | 5.1:-33631944 | MS.gene92938:CDS |
| GCAGCTTCCATGGCTTCTAC+AGG | 0.387857 | 5.1:+33631371 | None:intergenic |
| CCTAGTGATTGCTTGGTAAT+CGG | 0.388642 | 5.1:+33631562 | None:intergenic |
| GGAGAGGTTTGAGAAGTACT+TGG | 0.389397 | 5.1:-33632086 | MS.gene92938:CDS |
| GCCATGGAAGCTGCCATCGC+TGG | 0.399741 | 5.1:-33631362 | MS.gene92938:CDS |
| ATCGACTAAGACATCGTTAG+TGG | 0.402645 | 5.1:+33633161 | None:intergenic |
| GAGTGGAAGGAAAGGAAATC+TGG | 0.403522 | 5.1:-33632730 | MS.gene92938:CDS |
| GGATTTGATTCCTTACAATA+GGG | 0.403530 | 5.1:-33632161 | MS.gene92938:CDS |
| GAAGGTGTTTGATCGCATAT+TGG | 0.405938 | 5.1:-33631687 | MS.gene92938:CDS |
| GGAGGCGCATTATGCTTATA+GGG | 0.411872 | 5.1:-33632269 | MS.gene92938:CDS |
| CTTTCTGAGTGGATGGCACC+GGG | 0.421088 | 5.1:+33631465 | None:intergenic |
| GTTTATTGGTTCTAATCAAT+GGG | 0.421188 | 5.1:-33632182 | MS.gene92938:CDS |
| GGTTTGAGCGGTGGTGTTAG+TGG | 0.421910 | 5.1:+33633194 | None:intergenic |
| AAATCAAAATCAAAATCAAA+AGG | 0.423267 | 5.1:+33632679 | None:intergenic |
| GTTCGTGAGGGATATGGATT+GGG | 0.423720 | 5.1:-33631729 | MS.gene92938:CDS |
| CACAACTAGTTTCTGATACT+CGG | 0.428515 | 5.1:+33631337 | None:intergenic |
| CCGTTGACTCTTCCTTTGAT+CGG | 0.435307 | 5.1:-33632357 | MS.gene92938:CDS |
| TCATGAAGAAACTTGAAATT+GGG | 0.436482 | 5.1:+33632481 | None:intergenic |
| GCCAGCGATGGCAGCTTCCA+TGG | 0.443302 | 5.1:+33631361 | None:intergenic |
| GGTGGCCAACTTCAATTCTC+TGG | 0.445519 | 5.1:-33633133 | MS.gene92938:CDS |
| GATTTGAGAGTGTAGATCTC+AGG | 0.445904 | 5.1:+33633234 | None:intergenic |
| CTTCGTGGTGTTCGTGGTAC+CGG | 0.445975 | 5.1:-33632925 | MS.gene92938:CDS |
| GTTCCTTCCCTCGCTGACTT+TGG | 0.447504 | 5.1:-33632826 | MS.gene92938:CDS |
| TTCTCTGTCAACCCCATCGA+TGG | 0.448198 | 5.1:+33633096 | None:intergenic |
| GGGAAGGAACATTGGTAGCT+AGG | 0.450762 | 5.1:+33632839 | None:intergenic |
| ACTAGGAAGTATAGCGAGAA+AGG | 0.454566 | 5.1:-33631545 | MS.gene92938:CDS |
| GAGCATGTCTGGGACTCCTA+TGG | 0.455047 | 5.1:-33631882 | MS.gene92938:CDS |
| ACAACTAGTTTCTGATACTC+GGG | 0.457651 | 5.1:+33631338 | None:intergenic |
| CGATGTCTTAGTCGATCAAA+TGG | 0.462259 | 5.1:-33633154 | MS.gene92938:CDS |
| GCGGTGGTGTTAGTGGTGGT+AGG | 0.463470 | 5.1:+33633201 | None:intergenic |
| TGTAACCTTCGTGGTGTTCG+TGG | 0.465043 | 5.1:-33632931 | MS.gene92938:CDS |
| AATCAAAATCAAAATCAAAA+GGG | 0.469877 | 5.1:+33632680 | None:intergenic |
| CCTTTCTGAGTGGATGGCAC+CGG | 0.470831 | 5.1:+33631464 | None:intergenic |
| ATAGGGTTCGTGATCGTTTG+AGG | 0.471872 | 5.1:-33632252 | MS.gene92938:CDS |
| TCACCAACGTTTCTCTCTAC+TGG | 0.473200 | 5.1:-33633069 | MS.gene92938:CDS |
| TATACTTCCTAGTGATTGCT+TGG | 0.477986 | 5.1:+33631555 | None:intergenic |
| TGCCAAGAGGATCTTCCCTT+GGG | 0.479061 | 5.1:-33632311 | MS.gene92938:CDS |
| TTGCCAAGAGGATCTTCCCT+TGG | 0.480374 | 5.1:-33632312 | MS.gene92938:CDS |
| AAAGGAGTGGCGCTGGTAAG+TGG | 0.484002 | 5.1:-33631446 | MS.gene92938:CDS |
| AGGAGGATCAGATGATTAAG+AGG | 0.485373 | 5.1:-33631640 | MS.gene92938:CDS |
| TACTTGGAGGATGTGAAGGC+AGG | 0.488941 | 5.1:-33632070 | MS.gene92938:CDS |
| AGTGTCTCAGAAGGAGTATC+AGG | 0.489014 | 5.1:+33633012 | None:intergenic |
| ATCCCTCACGAACTGTGTCT+TGG | 0.489557 | 5.1:+33631739 | None:intergenic |
| GTAATAACCTTCCCTTTCCA+TGG | 0.491644 | 5.1:+33631812 | None:intergenic |
| ATGTGTCTGGGAGCATGTCT+GGG | 0.495012 | 5.1:-33631892 | MS.gene92938:CDS |
| GTATCAGAAACTAGTTGTGC+TGG | 0.495109 | 5.1:-33631333 | MS.gene92938:CDS |
| ATCGTTAGTGGTTGTTGTGG+AGG | 0.501932 | 5.1:+33633173 | None:intergenic |
| CCTCAGCTTCATGTGATTCA+GGG | 0.504209 | 5.1:-33631776 | MS.gene92938:CDS |
| AGAAAGAAGAGTGGAAGGAA+AGG | 0.506196 | 5.1:-33632738 | MS.gene92938:CDS |
| AGTTCGTGAGGGATATGGAT+TGG | 0.508853 | 5.1:-33631730 | MS.gene92938:CDS |
| GGATGGAGATGGTGGAGAAG+TGG | 0.510289 | 5.1:-33631990 | MS.gene92938:CDS |
| GGAATATGAAGGTGTGGAGG+AGG | 0.511393 | 5.1:-33632287 | MS.gene92938:CDS |
| ACAGAAGCCACCCTATTGTA+AGG | 0.513119 | 5.1:+33632151 | None:intergenic |
| CTGATACTCGGGGCCAGCGA+TGG | 0.513732 | 5.1:+33631349 | None:intergenic |
| TCAAGCGTCTGCAAACTCTT+GGG | 0.514244 | 5.1:-33631588 | MS.gene92938:CDS |
| CTCCCAAGGGAAGATCCTCT+TGG | 0.520806 | 5.1:+33632309 | None:intergenic |
| CTTTGGAACCTTCGAGAAGA+CGG | 0.520896 | 5.1:+33632773 | None:intergenic |
| CAGCTTCCATGGCTTCTACA+GGG | 0.521562 | 5.1:+33631372 | None:intergenic |
| GAGGTTTGAGAAGTACTTGG+AGG | 0.521875 | 5.1:-33632083 | MS.gene92938:CDS |
| GGAAGGAACATTGGTAGCTA+GGG | 0.522147 | 5.1:+33632840 | None:intergenic |
| AGCAACCAAAACCCATCGAT+GGG | 0.523034 | 5.1:-33633108 | MS.gene92938:CDS |
| CACTCAGAAAGGAGTGGCGC+TGG | 0.524221 | 5.1:-33631453 | MS.gene92938:CDS |
| ATATTGGATGTGGCTGTCAA+TGG | 0.529469 | 5.1:-33631671 | MS.gene92938:CDS |
| AAGTATAGCGAGAAAGGGTA+TGG | 0.530567 | 5.1:-33631539 | MS.gene92938:CDS |
| GCCACTCCTTTCTGAGTGGA+TGG | 0.533051 | 5.1:+33631458 | None:intergenic |
| TTGCAGTGTGTGATGTGTCT+GGG | 0.534674 | 5.1:-33631904 | MS.gene92938:CDS |
| GACATCGTTAGTGGTTGTTG+TGG | 0.541165 | 5.1:+33633170 | None:intergenic |
| AGAGGTGGCAGCGAGAGATA+AGG | 0.547672 | 5.1:-33632587 | MS.gene92938:CDS |
| GACTCCTATGGAGGTGTCTG+TGG | 0.550102 | 5.1:-33631870 | MS.gene92938:CDS |
| TCGAGAGACTCAAACTAGCT+TGG | 0.552185 | 5.1:-33632987 | MS.gene92938:CDS |
| AAACTCGTCTGTAACCTTCG+TGG | 0.553124 | 5.1:-33632940 | MS.gene92938:CDS |
| TGAGTGAGGAACCATGGAAA+GGG | 0.555980 | 5.1:-33631823 | MS.gene92938:CDS |
| TATTGGATGTGGCTGTCAAT+GGG | 0.560043 | 5.1:-33631670 | MS.gene92938:CDS |
| GCTTGCCAGAGAATTGAAGT+TGG | 0.563939 | 5.1:+33633128 | None:intergenic |
| CCGATTACCAAGCAATCACT+AGG | 0.565104 | 5.1:-33631562 | MS.gene92938:CDS |
| CTAGGAAGTATAGCGAGAAA+GGG | 0.566439 | 5.1:-33631544 | MS.gene92938:CDS |
| ATGAGATTATAGGGTCTTTG+GGG | 0.568462 | 5.1:-33632012 | MS.gene92938:CDS |
| GTCAGCGAGGGAAGGAACAT+TGG | 0.569181 | 5.1:+33632831 | None:intergenic |
| TCTCTGTCAACCCCATCGAT+GGG | 0.569197 | 5.1:+33633097 | None:intergenic |
| AAGCAACCAAAACCCATCGA+TGG | 0.569203 | 5.1:-33633109 | MS.gene92938:CDS |
| GAAGACGGTAGAGGATCTCA+GGG | 0.570432 | 5.1:+33632788 | None:intergenic |
| ATCCTCTACCGTCTTCTCGA+AGG | 0.571604 | 5.1:-33632781 | MS.gene92938:CDS |
| CCGGTGCCATCCACTCAGAA+AGG | 0.571959 | 5.1:-33631464 | MS.gene92938:CDS |
| CCCTGAATCACATGAAGCTG+AGG | 0.572263 | 5.1:+33631776 | None:intergenic |
| ACACCTTCATATTCCTCCCA+AGG | 0.573102 | 5.1:+33632295 | None:intergenic |
| GTTTGATCGCATATTGGATG+TGG | 0.574432 | 5.1:-33631681 | MS.gene92938:CDS |
| AACCTTCGAGAAGACGGTAG+AGG | 0.575489 | 5.1:+33632779 | None:intergenic |
| AAGGAGTGGCGCTGGTAAGT+GGG | 0.577776 | 5.1:-33631445 | MS.gene92938:CDS |
| GGGAAGACTACTATTGCTGC+TGG | 0.579975 | 5.1:-33632049 | MS.gene92938:CDS |
| CGGTGGTGTTAGTGGTGGTA+GGG | 0.581199 | 5.1:+33633202 | None:intergenic |
| TGGAGGTGTCTGTGGCATTG+GGG | 0.582479 | 5.1:-33631862 | MS.gene92938:CDS |
| GAGAGACTCGAAGGCCACCC+CGG | 0.584902 | 5.1:-33631483 | MS.gene92938:CDS |
| AATGCCACAGACACCTCCAT+AGG | 0.586105 | 5.1:+33631866 | None:intergenic |
| AGGGAAGATCCTCTTGGCAA+TGG | 0.586959 | 5.1:+33632315 | None:intergenic |
| TTCCCTTGGGAGGAATATGA+AGG | 0.588989 | 5.1:-33632298 | MS.gene92938:CDS |
| ACCGGTAAGTCCGATAAAGA+AGG | 0.590139 | 5.1:-33632907 | MS.gene92938:CDS |
| CATGTCTGGGACTCCTATGG+AGG | 0.590641 | 5.1:-33631879 | MS.gene92938:CDS |
| GATCTTCGTGTTCAGTGACA+TGG | 0.591209 | 5.1:-33631618 | MS.gene92938:CDS |
| ATCAAAATCAAAATCAAAAG+GGG | 0.592135 | 5.1:+33632681 | None:intergenic |
| TAACCAAAGTCAGCGAGGGA+AGG | 0.592742 | 5.1:+33632823 | None:intergenic |
| TTGAGTGAGGAACCATGGAA+AGG | 0.593836 | 5.1:-33631824 | MS.gene92938:CDS |
| TATAAGCCCTGTAGAAGCCA+TGG | 0.596604 | 5.1:-33631378 | MS.gene92938:CDS |
| CTCAGCTTCATGTGATTCAG+GGG | 0.597407 | 5.1:-33631775 | MS.gene92938:CDS |
| TTGAGAGTGTAGATCTCAGG+TGG | 0.598107 | 5.1:+33633237 | None:intergenic |
| TCAAAGGAAGAGTCAACGGA+AGG | 0.598171 | 5.1:+33632361 | None:intergenic |
| TTTGATTCCTTACAATAGGG+TGG | 0.598708 | 5.1:-33632158 | MS.gene92938:CDS |
| ACATTGTTCTTGGATAATGA+AGG | 0.599605 | 5.1:-33631404 | MS.gene92938:CDS |
| TTGGAATCTGAGAGACTCGA+AGG | 0.600799 | 5.1:-33631492 | MS.gene92938:CDS |
| TTAGAACCAATAAACACCTC+AGG | 0.602489 | 5.1:+33632190 | None:intergenic |
| GAAGTACTTGGAGGATGTGA+AGG | 0.604063 | 5.1:-33632074 | MS.gene92938:CDS |
| ACTTGGAGGATGTGAAGGCA+GGG | 0.604217 | 5.1:-33632069 | MS.gene92938:CDS |
| TGTGTTGGTGCCGTTGAGGA+AGG | 0.604572 | 5.1:-33632224 | MS.gene92938:CDS |
| CTCTCGACGAGTGTCTCAGA+AGG | 0.605004 | 5.1:+33633003 | None:intergenic |
| CAAGAGGATCTTCCCTTGGG+AGG | 0.606223 | 5.1:-33632308 | MS.gene92938:CDS |
| CCGAATTGAGTGAGGAACCA+TGG | 0.607067 | 5.1:-33631829 | MS.gene92938:CDS |
| GAGAAGTGGCTGAGTTGCAG+TGG | 0.607162 | 5.1:-33631976 | MS.gene92938:CDS |
| CCGATCAAAGGAAGAGTCAA+CGG | 0.608539 | 5.1:+33632357 | None:intergenic |
| TGGAAGAAGAAATCAAGACA+TGG | 0.609649 | 5.1:+33633042 | None:intergenic |
| GGTTGTTGTGGAGGTTTGAG+CGG | 0.610193 | 5.1:+33633182 | None:intergenic |
| AGGTGGGCCAACGAGAGTGA+CGG | 0.610407 | 5.1:+33633254 | None:intergenic |
| CAGCGCCACTCCTTTCTGAG+TGG | 0.610539 | 5.1:+33631454 | None:intergenic |
| CACCTTCATATTCCTCCCAA+GGG | 0.611175 | 5.1:+33632296 | None:intergenic |
| AATGCAGAAAGAAGAGTGGA+AGG | 0.611503 | 5.1:-33632743 | MS.gene92938:CDS |
| ATGGCCGCCGTCACTCTCGT+TGG | 0.612849 | 5.1:-33633261 | MS.gene92938:CDS |
| TGTTGTGGAGGTTTGAGCGG+TGG | 0.615236 | 5.1:+33633185 | None:intergenic |
| AGATTCCAAAAGACTATCTG+AGG | 0.615433 | 5.1:+33631506 | None:intergenic |
| CTGAGTGGATGGCACCGGGG+TGG | 0.616153 | 5.1:+33631469 | None:intergenic |
| TAACAGCGTTGACCGATCAA+AGG | 0.617986 | 5.1:+33632345 | None:intergenic |
| GGCTGTCAATGGGAATCTCA+AGG | 0.621591 | 5.1:-33631660 | MS.gene92938:CDS |
| GGTGCCGTTGAGGAAGGTGT+TGG | 0.622773 | 5.1:-33632218 | MS.gene92938:CDS |
| TTGAGCGGTGGTGTTAGTGG+TGG | 0.625189 | 5.1:+33633197 | None:intergenic |
| AGACTTCATCAAGACTGAAG+AGG | 0.626501 | 5.1:-33632605 | MS.gene92938:CDS |
| AATTCCAACACCTTCCTCAA+CGG | 0.628014 | 5.1:+33632214 | None:intergenic |
| CTTCATCAAGACTGAAGAGG+TGG | 0.631113 | 5.1:-33632602 | MS.gene92938:CDS |
| TTGGGAGGAATATGAAGGTG+TGG | 0.633554 | 5.1:-33632293 | MS.gene92938:CDS |
| GCAAAATGCAGAAAGAAGAG+TGG | 0.635170 | 5.1:-33632747 | MS.gene92938:CDS |
| GTCCAAGACACAGTTCGTGA+GGG | 0.639286 | 5.1:-33631741 | MS.gene92938:CDS |
| AAAGACCCTATAATCTCATG+AGG | 0.640006 | 5.1:+33632016 | None:intergenic |
| TTCGTGAGGGATATGGATTG+GGG | 0.640869 | 5.1:-33631728 | MS.gene92938:CDS |
| GAAGTAACCAAAGTCAGCGA+GGG | 0.641029 | 5.1:+33632819 | None:intergenic |
| AGTCCAAGACACAGTTCGTG+AGG | 0.643681 | 5.1:-33631742 | MS.gene92938:CDS |
| GGAGGAATATGAAGGTGTGG+AGG | 0.643817 | 5.1:-33632290 | MS.gene92938:CDS |
| AAGGAGTATCAGGAACAACA+TGG | 0.647046 | 5.1:+33633022 | None:intergenic |
| TCGTTTGAGGAAAGATGTGT+TGG | 0.647723 | 5.1:-33632239 | MS.gene92938:CDS |
| GCCATCCACTCAGAAAGGAG+TGG | 0.648100 | 5.1:-33631459 | MS.gene92938:CDS |
| TGAGGAACCATGGAAAGGGA+AGG | 0.648812 | 5.1:-33631819 | MS.gene92938:CDS |
| GGAAGAAGAAATCAAGACAT+GGG | 0.651030 | 5.1:+33633043 | None:intergenic |
| AAGATGTGTTGGTGCCGTTG+AGG | 0.652976 | 5.1:-33632228 | MS.gene92938:CDS |
| CAAAGGAAGAGTCAACGGAA+GGG | 0.653236 | 5.1:+33632362 | None:intergenic |
| GTTGGTGTCCGAATTGAGTG+AGG | 0.654872 | 5.1:-33631837 | MS.gene92938:CDS |
| TGGGCCAACGAGAGTGACGG+CGG | 0.663912 | 5.1:+33633257 | None:intergenic |
| GATGAACACTGATTTCCAGA+AGG | 0.669878 | 5.1:-33631705 | MS.gene92938:CDS |
| TGAGATTATAGGGTCTTTGG+GGG | 0.673539 | 5.1:-33632011 | MS.gene92938:CDS |
| TGTCTTAGTCGATCAAATGG+TGG | 0.681041 | 5.1:-33633151 | MS.gene92938:CDS |
| TCAGCTTCATGTGATTCAGG+GGG | 0.686603 | 5.1:-33631774 | MS.gene92938:CDS |
| TGAAGTAACCAAAGTCAGCG+AGG | 0.688387 | 5.1:+33632818 | None:intergenic |
| TGAGAGTGTAGATCTCAGGT+GGG | 0.694001 | 5.1:+33633238 | None:intergenic |
| TTTCTGAGTGGATGGCACCG+GGG | 0.698885 | 5.1:+33631466 | None:intergenic |
| CAACTAGTTTCTGATACTCG+GGG | 0.701259 | 5.1:+33631339 | None:intergenic |
| CGGTACCACGAACACCACGA+AGG | 0.704527 | 5.1:+33632926 | None:intergenic |
| GAAGGTGTTGGAATTGCCTG+AGG | 0.709397 | 5.1:-33632206 | MS.gene92938:CDS |
| GCAACCAAAACCCATCGATG+GGG | 0.709625 | 5.1:-33633107 | MS.gene92938:CDS |
| TATGTGAGACCATTGCCAAG+AGG | 0.711412 | 5.1:-33632324 | MS.gene92938:CDS |
| TTACCAGTAGAGAGAAACGT+TGG | 0.717379 | 5.1:+33633066 | None:intergenic |
| TCGTGAGGGATATGGATTGG+GGG | 0.737160 | 5.1:-33631727 | MS.gene92938:CDS |
| TGTCAATGGGAATCTCAAGG+AGG | 0.758838 | 5.1:-33631657 | MS.gene92938:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAAAATCAAAATCAAA+AGG | + | chr5.1:33631913-33631932 | None:intergenic | 15.0% |
| !! | AATCAAAATCAAAATCAAAA+GGG | + | chr5.1:33631912-33631931 | None:intergenic | 15.0% |
| !!! | TTGATTTTGATTTTGATTTT+AGG | - | chr5.1:33631914-33631933 | MS.gene92938:CDS | 15.0% |
| !! | ATCAAAATCAAAATCAAAAG+GGG | + | chr5.1:33631911-33631930 | None:intergenic | 20.0% |
| !!! | TATTGATGAAGATTTTCTTT+TGG | + | chr5.1:33631887-33631906 | None:intergenic | 20.0% |
| ! | ATCATGAAGAAACTTGAAAT+TGG | + | chr5.1:33632112-33632131 | None:intergenic | 25.0% |
| ! | TCATGAAGAAACTTGAAATT+GGG | + | chr5.1:33632111-33632130 | None:intergenic | 25.0% |
| !!! | GTTTATTGGTTCTAATCAAT+GGG | - | chr5.1:33632407-33632426 | MS.gene92938:CDS | 25.0% |
| !!! | TGTAGCAATGAAGTTTTATA+AGG | - | chr5.1:33632458-33632477 | MS.gene92938:CDS | 25.0% |
| !!! | TGTTTATTGGTTCTAATCAA+TGG | - | chr5.1:33632406-33632425 | MS.gene92938:CDS | 25.0% |
| !!! | TTTGATTTTGATTTTAGGAG+AGG | - | chr5.1:33631919-33631938 | MS.gene92938:CDS | 25.0% |
| ACATTGTTCTTGGATAATGA+AGG | - | chr5.1:33633185-33633204 | MS.gene92938:CDS | 30.0% | |
| GGATTTGATTCCTTACAATA+GGG | - | chr5.1:33632428-33632447 | MS.gene92938:CDS | 30.0% | |
| ! | ATTTTCATGAAACCATAGAG+CGG | + | chr5.1:33631719-33631738 | None:intergenic | 30.0% |
| !! | GTTGATGATTTGCTTAAGAA+AGG | - | chr5.1:33632645-33632664 | MS.gene92938:CDS | 30.0% |
| !! | TTTTGCTGATTGTTTGAAGA+AGG | - | chr5.1:33632146-33632165 | MS.gene92938:CDS | 30.0% |
| !!! | ATCTCGAGTTTTTGAAATCT+GGG | - | chr5.1:33632169-33632188 | MS.gene92938:CDS | 30.0% |
| !!! | CTTTCTTGTTTTTGTTGTTG+TGG | + | chr5.1:33631966-33631985 | None:intergenic | 30.0% |
| !!! | GAAGTTTTTGAAGCATGATA+AGG | - | chr5.1:33632482-33632501 | MS.gene92938:CDS | 30.0% |
| AAAGACCCTATAATCTCATG+AGG | + | chr5.1:33632576-33632595 | None:intergenic | 35.0% | |
| AAATCAGTCTTGCTGCTAAA+TGG | - | chr5.1:33632202-33632221 | MS.gene92938:CDS | 35.0% | |
| AGATTCCAAAAGACTATCTG+AGG | + | chr5.1:33633086-33633105 | None:intergenic | 35.0% | |
| ATGAGATTATAGGGTCTTTG+GGG | - | chr5.1:33632577-33632596 | MS.gene92938:CDS | 35.0% | |
| CATGAGATTATAGGGTCTTT+GGG | - | chr5.1:33632576-33632595 | MS.gene92938:CDS | 35.0% | |
| GGAAGAAGAAATCAAGACAT+GGG | + | chr5.1:33631549-33631568 | None:intergenic | 35.0% | |
| GGGATTTGATTCCTTACAAT+AGG | - | chr5.1:33632427-33632446 | MS.gene92938:CDS | 35.0% | |
| TATACTTCCTAGTGATTGCT+TGG | + | chr5.1:33633037-33633056 | None:intergenic | 35.0% | |
| TCATGAGATTATAGGGTCTT+TGG | - | chr5.1:33632575-33632594 | MS.gene92938:CDS | 35.0% | |
| TGCTTCCTCATGAGATTATA+GGG | - | chr5.1:33632568-33632587 | MS.gene92938:CDS | 35.0% | |
| TGGAAGAAGAAATCAAGACA+TGG | + | chr5.1:33631550-33631569 | None:intergenic | 35.0% | |
| TTAGAACCAATAAACACCTC+AGG | + | chr5.1:33632402-33632421 | None:intergenic | 35.0% | |
| TTGCTTCCTCATGAGATTAT+AGG | - | chr5.1:33632567-33632586 | MS.gene92938:CDS | 35.0% | |
| TTTGATTCCTTACAATAGGG+TGG | - | chr5.1:33632431-33632450 | MS.gene92938:CDS | 35.0% | |
| ! | AAGGTTACAGACGAGTTTTA+GGG | + | chr5.1:33631647-33631666 | None:intergenic | 35.0% |
| ! | ACAACTAGTTTCTGATACTC+GGG | + | chr5.1:33633254-33633273 | None:intergenic | 35.0% |
| ! | CACAACTAGTTTCTGATACT+CGG | + | chr5.1:33633255-33633274 | None:intergenic | 35.0% |
| ! | TTTCTGCATTTTGCGAACTT+TGG | + | chr5.1:33631836-33631855 | None:intergenic | 35.0% |
| !!! | GATCTCGAGTTTTTGAAATC+TGG | - | chr5.1:33632168-33632187 | MS.gene92938:CDS | 35.0% |
| !!! | TTTTGAAGCATGATAAGGAG+AGG | - | chr5.1:33632487-33632506 | MS.gene92938:CDS | 35.0% |
| AAGTATAGCGAGAAAGGGTA+TGG | - | chr5.1:33633050-33633069 | MS.gene92938:CDS | 40.0% | |
| AATGCAGAAAGAAGAGTGGA+AGG | - | chr5.1:33631846-33631865 | MS.gene92938:CDS | 40.0% | |
| AATTCCAACACCTTCCTCAA+CGG | + | chr5.1:33632378-33632397 | None:intergenic | 40.0% | |
| AGAAAGAAGAGTGGAAGGAA+AGG | - | chr5.1:33631851-33631870 | MS.gene92938:CDS | 40.0% | |
| AGACTTCATCAAGACTGAAG+AGG | - | chr5.1:33631984-33632003 | MS.gene92938:CDS | 40.0% | |
| AGCGTAGAAGCCTTCTTTAT+CGG | + | chr5.1:33631695-33631714 | None:intergenic | 40.0% | |
| AGGAGGATCAGATGATTAAG+AGG | - | chr5.1:33632949-33632968 | MS.gene92938:CDS | 40.0% | |
| ATATGCGATCAAACACCTTC+TGG | + | chr5.1:33632902-33632921 | None:intergenic | 40.0% | |
| ATATTGGATGTGGCTGTCAA+TGG | - | chr5.1:33632918-33632937 | MS.gene92938:CDS | 40.0% | |
| ATCGACTAAGACATCGTTAG+TGG | + | chr5.1:33631431-33631450 | None:intergenic | 40.0% | |
| CGATGTCTTAGTCGATCAAA+TGG | - | chr5.1:33631435-33631454 | MS.gene92938:CDS | 40.0% | |
| GAATCTGCTGACATTGTTCT+TGG | - | chr5.1:33633175-33633194 | MS.gene92938:CDS | 40.0% | |
| GCAAAATGCAGAAAGAAGAG+TGG | - | chr5.1:33631842-33631861 | MS.gene92938:CDS | 40.0% | |
| GTAATAACCTTCCCTTTCCA+TGG | + | chr5.1:33632780-33632799 | None:intergenic | 40.0% | |
| GTATCAGAAACTAGTTGTGC+TGG | - | chr5.1:33633256-33633275 | MS.gene92938:CDS | 40.0% | |
| GTTTGATCGCATATTGGATG+TGG | - | chr5.1:33632908-33632927 | MS.gene92938:CDS | 40.0% | |
| TATTGGATGTGGCTGTCAAT+GGG | - | chr5.1:33632919-33632938 | MS.gene92938:CDS | 40.0% | |
| TCGTTTGAGGAAAGATGTGT+TGG | - | chr5.1:33632350-33632369 | MS.gene92938:CDS | 40.0% | |
| TGAGATTATAGGGTCTTTGG+GGG | - | chr5.1:33632578-33632597 | MS.gene92938:CDS | 40.0% | |
| TGTCTTAGTCGATCAAATGG+TGG | - | chr5.1:33631438-33631457 | MS.gene92938:CDS | 40.0% | |
| TTACCAGTAGAGAGAAACGT+TGG | + | chr5.1:33631526-33631545 | None:intergenic | 40.0% | |
| ! | ACTAGGAAGTATAGCGAGAA+AGG | - | chr5.1:33633044-33633063 | MS.gene92938:CDS | 40.0% |
| ! | CAACTAGTTTCTGATACTCG+GGG | + | chr5.1:33633253-33633272 | None:intergenic | 40.0% |
| ! | CCTAGTGATTGCTTGGTAAT+CGG | + | chr5.1:33633030-33633049 | None:intergenic | 40.0% |
| ! | CTAGGAAGTATAGCGAGAAA+GGG | - | chr5.1:33633045-33633064 | MS.gene92938:CDS | 40.0% |
| ! | GAAGGTTACAGACGAGTTTT+AGG | + | chr5.1:33631648-33631667 | None:intergenic | 40.0% |
| ! | GAATTGCCTGAGGTGTTTAT+TGG | - | chr5.1:33632393-33632412 | MS.gene92938:CDS | 40.0% |
| ! | GATTTGAGAGTGTAGATCTC+AGG | + | chr5.1:33631358-33631377 | None:intergenic | 40.0% |
| !! | AAGGAGTATCAGGAACAACA+TGG | + | chr5.1:33631570-33631589 | None:intergenic | 40.0% |
| !! | ACATTGGTAGCTAGGGTTTT+AGG | + | chr5.1:33631745-33631764 | None:intergenic | 40.0% |
| !! | AGCAGCAAGACTGATTTTTG+TGG | + | chr5.1:33632199-33632218 | None:intergenic | 40.0% |
| !! | CATTGGTAGCTAGGGTTTTA+GGG | + | chr5.1:33631744-33631763 | None:intergenic | 40.0% |
| !! | GAAGGTGTTTGATCGCATAT+TGG | - | chr5.1:33632902-33632921 | MS.gene92938:CDS | 40.0% |
| !! | GATGAACACTGATTTCCAGA+AGG | - | chr5.1:33632884-33632903 | MS.gene92938:CDS | 40.0% |
| !! | GCAGCAAGACTGATTTTTGT+GGG | + | chr5.1:33632198-33632217 | None:intergenic | 40.0% |
| !!! | ACGTTTTGAAGGAAGAGAAG+AGG | - | chr5.1:33632043-33632062 | MS.gene92938:CDS | 40.0% |
| AAACTCGTCTGTAACCTTCG+TGG | - | chr5.1:33631649-33631668 | MS.gene92938:CDS | 45.0% | |
| AAGCAACCAAAACCCATCGA+TGG | - | chr5.1:33631480-33631499 | MS.gene92938:CDS | 45.0% | |
| ACACCTTCATATTCCTCCCA+AGG | + | chr5.1:33632297-33632316 | None:intergenic | 45.0% | |
| ACAGAAGCCACCCTATTGTA+AGG | + | chr5.1:33632441-33632460 | None:intergenic | 45.0% | |
| ACCGGTAAGTCCGATAAAGA+AGG | - | chr5.1:33631682-33631701 | MS.gene92938:CDS | 45.0% | |
| AGCAACCAAAACCCATCGAT+GGG | - | chr5.1:33631481-33631500 | MS.gene92938:CDS | 45.0% | |
| AGTTCGTGAGGGATATGGAT+TGG | - | chr5.1:33632859-33632878 | MS.gene92938:CDS | 45.0% | |
| ATAGGGTTCGTGATCGTTTG+AGG | - | chr5.1:33632337-33632356 | MS.gene92938:CDS | 45.0% | |
| ATCAAGCGTCTGCAAACTCT+TGG | - | chr5.1:33633000-33633019 | MS.gene92938:CDS | 45.0% | |
| ATCGTTAGTGGTTGTTGTGG+AGG | + | chr5.1:33631419-33631438 | None:intergenic | 45.0% | |
| CAAAGGAAGAGTCAACGGAA+GGG | + | chr5.1:33632230-33632249 | None:intergenic | 45.0% | |
| CACCTTCATATTCCTCCCAA+GGG | + | chr5.1:33632296-33632315 | None:intergenic | 45.0% | |
| CCATGGTTCCTCACTCAATT+CGG | + | chr5.1:33632763-33632782 | None:intergenic | 45.0% | |
| CCGATCAAAGGAAGAGTCAA+CGG | + | chr5.1:33632235-33632254 | None:intergenic | 45.0% | |
| CCGATTACCAAGCAATCACT+AGG | - | chr5.1:33633027-33633046 | MS.gene92938:CDS | 45.0% | |
| CCTCAGCTTCATGTGATTCA+GGG | - | chr5.1:33632813-33632832 | MS.gene92938:CDS | 45.0% | |
| CTCAGCTTCATGTGATTCAG+GGG | - | chr5.1:33632814-33632833 | MS.gene92938:CDS | 45.0% | |
| CTTCATCAAGACTGAAGAGG+TGG | - | chr5.1:33631987-33632006 | MS.gene92938:CDS | 45.0% | |
| GAAGTAACCAAAGTCAGCGA+GGG | + | chr5.1:33631773-33631792 | None:intergenic | 45.0% | |
| GACATCGTTAGTGGTTGTTG+TGG | + | chr5.1:33631422-33631441 | None:intergenic | 45.0% | |
| GAGTGGAAGGAAAGGAAATC+TGG | - | chr5.1:33631859-33631878 | MS.gene92938:CDS | 45.0% | |
| GATCTTCGTGTTCAGTGACA+TGG | - | chr5.1:33632971-33632990 | MS.gene92938:CDS | 45.0% | |
| GCCTTCTTTATCGGACTTAC+CGG | + | chr5.1:33631686-33631705 | None:intergenic | 45.0% | |
| GCTTGCCAGAGAATTGAAGT+TGG | + | chr5.1:33631464-33631483 | None:intergenic | 45.0% | |
| GTTCGTGAGGGATATGGATT+GGG | - | chr5.1:33632860-33632879 | MS.gene92938:CDS | 45.0% | |
| TATAAGCCCTGTAGAAGCCA+TGG | - | chr5.1:33633211-33633230 | MS.gene92938:CDS | 45.0% | |
| TATGTGAGACCATTGCCAAG+AGG | - | chr5.1:33632265-33632284 | MS.gene92938:CDS | 45.0% | |
| TCAAAGGAAGAGTCAACGGA+AGG | + | chr5.1:33632231-33632250 | None:intergenic | 45.0% | |
| TCAAGCGTCTGCAAACTCTT+GGG | - | chr5.1:33633001-33633020 | MS.gene92938:CDS | 45.0% | |
| TCACCAACGTTTCTCTCTAC+TGG | - | chr5.1:33631520-33631539 | MS.gene92938:CDS | 45.0% | |
| TCAGCTTCATGTGATTCAGG+GGG | - | chr5.1:33632815-33632834 | MS.gene92938:CDS | 45.0% | |
| TCGAGAGACTCAAACTAGCT+TGG | - | chr5.1:33631602-33631621 | MS.gene92938:CDS | 45.0% | |
| TGAAGTAACCAAAGTCAGCG+AGG | + | chr5.1:33631774-33631793 | None:intergenic | 45.0% | |
| TGAGTGAGGAACCATGGAAA+GGG | - | chr5.1:33632766-33632785 | MS.gene92938:CDS | 45.0% | |
| TGTCAATGGGAATCTCAAGG+AGG | - | chr5.1:33632932-33632951 | MS.gene92938:CDS | 45.0% | |
| TGTTAGTGGTGGTAGGGTTA+GGG | + | chr5.1:33631384-33631403 | None:intergenic | 45.0% | |
| TTCCCTTGGGAGGAATATGA+AGG | - | chr5.1:33632291-33632310 | MS.gene92938:CDS | 45.0% | |
| TTGAGTGAGGAACCATGGAA+AGG | - | chr5.1:33632765-33632784 | MS.gene92938:CDS | 45.0% | |
| TTGCAGTGTGTGATGTGTCT+GGG | - | chr5.1:33632685-33632704 | MS.gene92938:CDS | 45.0% | |
| TTGGAATCTGAGAGACTCGA+AGG | - | chr5.1:33633097-33633116 | MS.gene92938:CDS | 45.0% | |
| TTGGGAGGAATATGAAGGTG+TGG | - | chr5.1:33632296-33632315 | MS.gene92938:CDS | 45.0% | |
| ! | AGAAGCTGCTCACGTTTTGA+AGG | - | chr5.1:33632032-33632051 | MS.gene92938:CDS | 45.0% |
| ! | AGGAGGCGCATTATGCTTAT+AGG | - | chr5.1:33632319-33632338 | MS.gene92938:CDS | 45.0% |
| ! | ATTATAGGGTCTTTGGGGGA+TGG | - | chr5.1:33632582-33632601 | MS.gene92938:CDS | 45.0% |
| ! | CTGTGCCTCAGATAGTCTTT+TGG | - | chr5.1:33633078-33633097 | MS.gene92938:CDS | 45.0% |
| ! | GAAGTACTTGGAGGATGTGA+AGG | - | chr5.1:33632515-33632534 | MS.gene92938:CDS | 45.0% |
| ! | GGAAGGAACATTGGTAGCTA+GGG | + | chr5.1:33631752-33631771 | None:intergenic | 45.0% |
| ! | GGAGGCGCATTATGCTTATA+GGG | - | chr5.1:33632320-33632339 | MS.gene92938:CDS | 45.0% |
| ! | TGAGAGTGTAGATCTCAGGT+GGG | + | chr5.1:33631354-33631373 | None:intergenic | 45.0% |
| ! | TTCGTGAGGGATATGGATTG+GGG | - | chr5.1:33632861-33632880 | MS.gene92938:CDS | 45.0% |
| ! | TTGAGAGTGTAGATCTCAGG+TGG | + | chr5.1:33631355-33631374 | None:intergenic | 45.0% |
| !! | AGTGTCTCAGAAGGAGTATC+AGG | + | chr5.1:33631580-33631599 | None:intergenic | 45.0% |
| !! | CCGTTGACTCTTCCTTTGAT+CGG | - | chr5.1:33632232-33632251 | MS.gene92938:CDS | 45.0% |
| !! | CTTTGGAACCTTCGAGAAGA+CGG | + | chr5.1:33631819-33631838 | None:intergenic | 45.0% |
| !! | GAGGTTTGAGAAGTACTTGG+AGG | - | chr5.1:33632506-33632525 | MS.gene92938:CDS | 45.0% |
| !! | GGAGAGGTTTGAGAAGTACT+TGG | - | chr5.1:33632503-33632522 | MS.gene92938:CDS | 45.0% |
| !! | TAACAGCGTTGACCGATCAA+AGG | + | chr5.1:33632247-33632266 | None:intergenic | 45.0% |
| !! | TAGGGTGGTGAGTGGATTTT+GGG | + | chr5.1:33631629-33631648 | None:intergenic | 45.0% |
| !! | TTAGGGTGGTGAGTGGATTT+TGG | + | chr5.1:33631630-33631649 | None:intergenic | 45.0% |
| !!! | GTTACAGACGAGTTTTAGGG+TGG | + | chr5.1:33631644-33631663 | None:intergenic | 45.0% |
| AACCTTCGAGAAGACGGTAG+AGG | + | chr5.1:33631813-33631832 | None:intergenic | 50.0% | |
| AATGCCACAGACACCTCCAT+AGG | + | chr5.1:33632726-33632745 | None:intergenic | 50.0% | |
| ACTTGGAGGATGTGAAGGCA+GGG | - | chr5.1:33632520-33632539 | MS.gene92938:CDS | 50.0% | |
| AGAAGACGGTAGAGGATCTC+AGG | + | chr5.1:33631805-33631824 | None:intergenic | 50.0% | |
| AGGGAAGATCCTCTTGGCAA+TGG | + | chr5.1:33632277-33632296 | None:intergenic | 50.0% | |
| AGTCCAAGACACAGTTCGTG+AGG | - | chr5.1:33632847-33632866 | MS.gene92938:CDS | 50.0% | |
| ATCCCTCACGAACTGTGTCT+TGG | + | chr5.1:33632853-33632872 | None:intergenic | 50.0% | |
| ATCCTCTACCGTCTTCTCGA+AGG | - | chr5.1:33631808-33631827 | MS.gene92938:CDS | 50.0% | |
| CAGCTTCCATGGCTTCTACA+GGG | + | chr5.1:33633220-33633239 | None:intergenic | 50.0% | |
| CCCTGAATCACATGAAGCTG+AGG | + | chr5.1:33632816-33632835 | None:intergenic | 50.0% | |
| CCGAATTGAGTGAGGAACCA+TGG | - | chr5.1:33632760-33632779 | MS.gene92938:CDS | 50.0% | |
| CTTGCAGTGTGTGATGTGTC+TGG | - | chr5.1:33632684-33632703 | MS.gene92938:CDS | 50.0% | |
| GAAGACGGTAGAGGATCTCA+GGG | + | chr5.1:33631804-33631823 | None:intergenic | 50.0% | |
| GACACAGTTCGTGAGGGATA+TGG | - | chr5.1:33632854-33632873 | MS.gene92938:CDS | 50.0% | |
| GCAACCAAAACCCATCGATG+GGG | - | chr5.1:33631482-33631501 | MS.gene92938:CDS | 50.0% | |
| GCCTCAGCTTCATGTGATTC+AGG | - | chr5.1:33632812-33632831 | MS.gene92938:CDS | 50.0% | |
| GGCTGTCAATGGGAATCTCA+AGG | - | chr5.1:33632929-33632948 | MS.gene92938:CDS | 50.0% | |
| GGGAAGACTACTATTGCTGC+TGG | - | chr5.1:33632540-33632559 | MS.gene92938:CDS | 50.0% | |
| GGTGGCCAACTTCAATTCTC+TGG | - | chr5.1:33631456-33631475 | MS.gene92938:CDS | 50.0% | |
| GGTTGTTGTGGAGGTTTGAG+CGG | + | chr5.1:33631410-33631429 | None:intergenic | 50.0% | |
| GTCCAAGACACAGTTCGTGA+GGG | - | chr5.1:33632848-33632867 | MS.gene92938:CDS | 50.0% | |
| GTGTTAGTGGTGGTAGGGTT+AGG | + | chr5.1:33631385-33631404 | None:intergenic | 50.0% | |
| TAACCAAAGTCAGCGAGGGA+AGG | + | chr5.1:33631769-33631788 | None:intergenic | 50.0% | |
| TACTTGGAGGATGTGAAGGC+AGG | - | chr5.1:33632519-33632538 | MS.gene92938:CDS | 50.0% | |
| TCTCTGTCAACCCCATCGAT+GGG | + | chr5.1:33631495-33631514 | None:intergenic | 50.0% | |
| TGAGGAACCATGGAAAGGGA+AGG | - | chr5.1:33632770-33632789 | MS.gene92938:CDS | 50.0% | |
| TGCCAAGAGGATCTTCCCTT+GGG | - | chr5.1:33632278-33632297 | MS.gene92938:CDS | 50.0% | |
| TGTAACCTTCGTGGTGTTCG+TGG | - | chr5.1:33631658-33631677 | MS.gene92938:CDS | 50.0% | |
| TTCTCTGTCAACCCCATCGA+TGG | + | chr5.1:33631496-33631515 | None:intergenic | 50.0% | |
| TTGCCAAGAGGATCTTCCCT+TGG | - | chr5.1:33632277-33632296 | MS.gene92938:CDS | 50.0% | |
| ! | ATGTGTCTGGGAGCATGTCT+GGG | - | chr5.1:33632697-33632716 | MS.gene92938:CDS | 50.0% |
| ! | GGAATATGAAGGTGTGGAGG+AGG | - | chr5.1:33632302-33632321 | MS.gene92938:CDS | 50.0% |
| ! | GGAGGAATATGAAGGTGTGG+AGG | - | chr5.1:33632299-33632318 | MS.gene92938:CDS | 50.0% |
| ! | GGGAAGGAACATTGGTAGCT+AGG | + | chr5.1:33631753-33631772 | None:intergenic | 50.0% |
| ! | GTTGGTGTCCGAATTGAGTG+AGG | - | chr5.1:33632752-33632771 | MS.gene92938:CDS | 50.0% |
| !! | AAGATGTGTTGGTGCCGTTG+AGG | - | chr5.1:33632361-33632380 | MS.gene92938:CDS | 50.0% |
| !! | ATGGAGGTGTCTGTGGCATT+GGG | - | chr5.1:33632726-33632745 | MS.gene92938:CDS | 50.0% |
| !! | GAAGGTGTTGGAATTGCCTG+AGG | - | chr5.1:33632383-33632402 | MS.gene92938:CDS | 50.0% |
| !! | TATGGAGGTGTCTGTGGCAT+TGG | - | chr5.1:33632725-33632744 | MS.gene92938:CDS | 50.0% |
| !! | TCAACCCCATCGATGGGTTT+TGG | + | chr5.1:33631489-33631508 | None:intergenic | 50.0% |
| !! | TCGTGAGGGATATGGATTGG+GGG | - | chr5.1:33632862-33632881 | MS.gene92938:CDS | 50.0% |
| !!! | ACGAGTTTTAGGGTGGTGAG+TGG | + | chr5.1:33631637-33631656 | None:intergenic | 50.0% |
| AGAGGTGGCAGCGAGAGATA+AGG | - | chr5.1:33632002-33632021 | MS.gene92938:CDS | 55.0% | |
| CAAGAGGATCTTCCCTTGGG+AGG | - | chr5.1:33632281-33632300 | MS.gene92938:CDS | 55.0% | |
| CCTTTCTGAGTGGATGGCAC+CGG | + | chr5.1:33633128-33633147 | None:intergenic | 55.0% | |
| CTCCCAAGGGAAGATCCTCT+TGG | + | chr5.1:33632283-33632302 | None:intergenic | 55.0% | |
| CTCTCGACGAGTGTCTCAGA+AGG | + | chr5.1:33631589-33631608 | None:intergenic | 55.0% | |
| CTTCGTGGTGTTCGTGGTAC+CGG | - | chr5.1:33631664-33631683 | MS.gene92938:CDS | 55.0% | |
| CTTTCTGAGTGGATGGCACC+GGG | + | chr5.1:33633127-33633146 | None:intergenic | 55.0% | |
| GAGAAGTGGCTGAGTTGCAG+TGG | - | chr5.1:33632613-33632632 | MS.gene92938:CDS | 55.0% | |
| GCAGCTTCCATGGCTTCTAC+AGG | + | chr5.1:33633221-33633240 | None:intergenic | 55.0% | |
| GCCACTCCTTTCTGAGTGGA+TGG | + | chr5.1:33633134-33633153 | None:intergenic | 55.0% | |
| GCCATCCACTCAGAAAGGAG+TGG | - | chr5.1:33633130-33633149 | MS.gene92938:CDS | 55.0% | |
| GTCAGCGAGGGAAGGAACAT+TGG | + | chr5.1:33631761-33631780 | None:intergenic | 55.0% | |
| TGTTGTGGAGGTTTGAGCGG+TGG | + | chr5.1:33631407-33631426 | None:intergenic | 55.0% | |
| TTTCTGAGTGGATGGCACCG+GGG | + | chr5.1:33633126-33633145 | None:intergenic | 55.0% | |
| ! | CATGTCTGGGACTCCTATGG+AGG | - | chr5.1:33632710-33632729 | MS.gene92938:CDS | 55.0% |
| ! | CGGTGGTGTTAGTGGTGGTA+GGG | + | chr5.1:33631390-33631409 | None:intergenic | 55.0% |
| ! | GAGCATGTCTGGGACTCCTA+TGG | - | chr5.1:33632707-33632726 | MS.gene92938:CDS | 55.0% |
| ! | GATGTGTCTGGGAGCATGTC+TGG | - | chr5.1:33632696-33632715 | MS.gene92938:CDS | 55.0% |
| ! | GGTTTGAGCGGTGGTGTTAG+TGG | + | chr5.1:33631398-33631417 | None:intergenic | 55.0% |
| ! | GTCTGTGGCATTGGGGTTGT+TGG | - | chr5.1:33632734-33632753 | MS.gene92938:CDS | 55.0% |
| ! | TCTTTGGGGGATGGAGATGG+TGG | - | chr5.1:33632591-33632610 | MS.gene92938:CDS | 55.0% |
| ! | TTGAGCGGTGGTGTTAGTGG+TGG | + | chr5.1:33631395-33631414 | None:intergenic | 55.0% |
| !! | AAAGGAGTGGCGCTGGTAAG+TGG | - | chr5.1:33633143-33633162 | MS.gene92938:CDS | 55.0% |
| !! | AAGGAGTGGCGCTGGTAAGT+GGG | - | chr5.1:33633144-33633163 | MS.gene92938:CDS | 55.0% |
| !! | GACTCCTATGGAGGTGTCTG+TGG | - | chr5.1:33632719-33632738 | MS.gene92938:CDS | 55.0% |
| !! | GGATGGAGATGGTGGAGAAG+TGG | - | chr5.1:33632599-33632618 | MS.gene92938:CDS | 55.0% |
| !! | GTTCCTTCCCTCGCTGACTT+TGG | - | chr5.1:33631763-33631782 | MS.gene92938:CDS | 55.0% |
| !! | TGGAGGTGTCTGTGGCATTG+GGG | - | chr5.1:33632727-33632746 | MS.gene92938:CDS | 55.0% |
| !! | TGTGTTGGTGCCGTTGAGGA+AGG | - | chr5.1:33632365-33632384 | MS.gene92938:CDS | 55.0% |
| AGGTGGGCCAACGAGAGTGA+CGG | + | chr5.1:33631338-33631357 | None:intergenic | 60.0% | |
| CACTCAGAAAGGAGTGGCGC+TGG | - | chr5.1:33633136-33633155 | MS.gene92938:CDS | 60.0% | |
| CAGCGCCACTCCTTTCTGAG+TGG | + | chr5.1:33633138-33633157 | None:intergenic | 60.0% | |
| CGGTACCACGAACACCACGA+AGG | + | chr5.1:33631666-33631685 | None:intergenic | 60.0% | |
| GCTTCTACGCTGCCGCTCTA+TGG | - | chr5.1:33631704-33631723 | MS.gene92938:CDS | 60.0% | |
| ! | GCGGTGGTGTTAGTGGTGGT+AGG | + | chr5.1:33631391-33631410 | None:intergenic | 60.0% |
| ! | GGGTCTTTGGGGGATGGAGA+TGG | - | chr5.1:33632588-33632607 | MS.gene92938:CDS | 60.0% |
| !! | CCGGTGCCATCCACTCAGAA+AGG | - | chr5.1:33633125-33633144 | MS.gene92938:CDS | 60.0% |
| !! | GGTGCCGTTGAGGAAGGTGT+TGG | - | chr5.1:33632371-33632390 | MS.gene92938:CDS | 60.0% |
| ATGGCCGCCGTCACTCTCGT+TGG | - | chr5.1:33631328-33631347 | MS.gene92938:CDS | 65.0% | |
| CTGATACTCGGGGCCAGCGA+TGG | + | chr5.1:33633243-33633262 | None:intergenic | 65.0% | |
| GAGAGACTCGAAGGCCACCC+CGG | - | chr5.1:33633106-33633125 | MS.gene92938:CDS | 65.0% | |
| GCCAGCGATGGCAGCTTCCA+TGG | + | chr5.1:33633231-33633250 | None:intergenic | 65.0% | |
| GCCATGGAAGCTGCCATCGC+TGG | - | chr5.1:33633227-33633246 | MS.gene92938:CDS | 65.0% | |
| TGGGCCAACGAGAGTGACGG+CGG | + | chr5.1:33631335-33631354 | None:intergenic | 65.0% | |
| ! | CTGAGTGGATGGCACCGGGG+TGG | + | chr5.1:33633123-33633142 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 33631328 | 33633283 | 33631328 | ID=MS.gene92938 |
| chr5.1 | mRNA | 33631328 | 33633283 | 33631328 | ID=MS.gene92938.t1;Parent=MS.gene92938 |
| chr5.1 | exon | 33631328 | 33633283 | 33631328 | ID=MS.gene92938.t1.exon1;Parent=MS.gene92938.t1 |
| chr5.1 | CDS | 33631328 | 33633283 | 33631328 | ID=cds.MS.gene92938.t1;Parent=MS.gene92938.t1 |
| Gene Sequence |
| Protein sequence |
