Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97396.t1 | XP_003598553.1 | 89.4 | 85 | 9 | 0 | 1 | 85 | 143 | 227 | 1.40E-36 | 161.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97396.t1 | G7IVX0 | 89.4 | 85 | 9 | 0 | 1 | 85 | 143 | 227 | 1.0e-36 | 161.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene97396 | 0.866542 | 2.64E-65 | -1.69E-46 |
| MS.gene049173 | MS.gene97396 | 0.867091 | 1.77E-65 | -1.69E-46 |
| MS.gene049217 | MS.gene97396 | 0.861297 | 1.13E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene97396 | 0.870743 | 1.16E-66 | -1.69E-46 |
| MS.gene049232 | MS.gene97396 | 0.809557 | 1.78E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene97396 | 0.857296 | 1.80E-62 | -1.69E-46 |
| MS.gene049320 | MS.gene97396 | 0.843013 | 1.82E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene97396 | 0.808981 | 2.37E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene97396 | 0.825901 | 3.64E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene97396 | 0.811288 | 7.54E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene97396 | 0.802137 | 6.47E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene97396 | 0.871739 | 5.43E-67 | -1.69E-46 |
| MS.gene050165 | MS.gene97396 | 0.876745 | 1.09E-68 | -1.69E-46 |
| MS.gene050323 | MS.gene97396 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene97396 | 0.851426 | 8.94E-61 | -1.69E-46 |
| MS.gene050444 | MS.gene97396 | 0.857806 | 1.27E-62 | -1.69E-46 |
| MS.gene050504 | MS.gene97396 | 0.868787 | 5.03E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene97396 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene97396 | 0.821476 | 3.96E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene97396 | 0.848994 | 4.30E-60 | -1.69E-46 |
| MS.gene050675 | MS.gene97396 | 0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene050699 | MS.gene97396 | 0.820078 | 8.29E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene97396 | 0.822033 | 2.94E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene97396 | 0.822629 | 2.14E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene97396 | 0.828686 | 7.83E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene97396 | 0.839234 | 1.79E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene97396 | 0.837553 | 4.86E-57 | -1.69E-46 |
| MS.gene050904 | MS.gene97396 | 0.819716 | 1.00E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene97396 | 0.81257 | 3.97E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene97396 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene05100 | MS.gene97396 | 0.833483 | 5.20E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene97396 | 0.833809 | 4.31E-56 | -1.69E-46 |
| MS.gene051268 | MS.gene97396 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene051317 | MS.gene97396 | 0.807798 | 4.24E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene97396 | 0.821824 | 3.29E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene97396 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene97396 | 0.819569 | 1.08E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene97396 | 0.846483 | 2.11E-59 | -1.69E-46 |
| MS.gene051858 | MS.gene97396 | 0.834503 | 2.89E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene97396 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene97396 | 0.85943 | 4.16E-63 | -1.69E-46 |
| MS.gene052164 | MS.gene97396 | 0.837017 | 6.66E-57 | -1.69E-46 |
| MS.gene052271 | MS.gene97396 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene97396 | 0.820954 | 5.22E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene97396 | 0.807425 | 5.09E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene97396 | 0.805409 | 1.35E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene97396 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene97396 | 0.814861 | 1.24E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene97396 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene97396 | 0.811019 | 8.63E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene97396 | 0.80357 | 3.27E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene97396 | 0.811956 | 5.40E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene97396 | 0.815713 | 8.03E-52 | -1.69E-46 |
| MS.gene053284 | MS.gene97396 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene053285 | MS.gene97396 | 0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene97396 | 0.81184 | 5.72E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene97396 | 0.809922 | 1.49E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene97396 | 0.873532 | 1.37E-67 | -1.69E-46 |
| MS.gene053824 | MS.gene97396 | 0.835598 | 1.53E-56 | -1.69E-46 |
| MS.gene053916 | MS.gene97396 | 0.823715 | 1.19E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene97396 | 0.804414 | 2.19E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene97396 | 0.833943 | 3.99E-56 | -1.69E-46 |
| MS.gene054642 | MS.gene97396 | 0.857668 | 1.39E-62 | -1.69E-46 |
| MS.gene054706 | MS.gene97396 | -0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene97396 | 0.84007 | 1.08E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene97396 | 0.848563 | 5.66E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene97396 | 0.837921 | 3.91E-57 | -1.69E-46 |
| MS.gene055212 | MS.gene97396 | 0.817408 | 3.35E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene97396 | 0.852169 | 5.51E-61 | -1.69E-46 |
| MS.gene055502 | MS.gene97396 | 0.860885 | 1.51E-63 | -1.69E-46 |
| MS.gene055577 | MS.gene97396 | 0.852466 | 4.53E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene97396 | 0.834384 | 3.09E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene97396 | 0.833127 | 6.38E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene97396 | 0.813968 | 1.96E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene97396 | 0.837666 | 4.54E-57 | -1.69E-46 |
| MS.gene055776 | MS.gene97396 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene97396 | 0.824212 | 9.12E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene97396 | 0.835785 | 1.37E-56 | -1.69E-46 |
| MS.gene056374 | MS.gene97396 | 0.811971 | 5.36E-51 | -1.69E-46 |
| MS.gene056449 | MS.gene97396 | 0.805797 | 1.12E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene97396 | 0.839202 | 1.82E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene97396 | 0.84595 | 2.95E-59 | -1.69E-46 |
| MS.gene056549 | MS.gene97396 | 0.811756 | 5.97E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene97396 | 0.84606 | 2.75E-59 | -1.69E-46 |
| MS.gene056692 | MS.gene97396 | 0.815359 | 9.62E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene97396 | 0.82801 | 1.14E-54 | -1.69E-46 |
| MS.gene057246 | MS.gene97396 | 0.812852 | 3.44E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene97396 | 0.802004 | 6.89E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene97396 | 0.82856 | 8.40E-55 | -1.69E-46 |
| MS.gene057805 | MS.gene97396 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene057856 | MS.gene97396 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene057857 | MS.gene97396 | 0.821993 | 3.01E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene97396 | 0.831174 | 1.94E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene97396 | 0.857226 | 1.89E-62 | -1.69E-46 |
| MS.gene058544 | MS.gene97396 | 0.81831 | 2.10E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene97396 | 0.838956 | 2.11E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene97396 | 0.857101 | 2.05E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene97396 | 0.820684 | 6.02E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene97396 | 0.863357 | 2.64E-64 | -1.69E-46 |
| MS.gene059023 | MS.gene97396 | 0.839517 | 1.51E-57 | -1.69E-46 |
| MS.gene059029 | MS.gene97396 | 0.828368 | 9.35E-55 | -1.69E-46 |
| MS.gene05912 | MS.gene97396 | 0.836811 | 7.52E-57 | -1.69E-46 |
| MS.gene05913 | MS.gene97396 | 0.854626 | 1.09E-61 | -1.69E-46 |
| MS.gene05914 | MS.gene97396 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene97396 | 0.819187 | 1.32E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene97396 | 0.867153 | 1.69E-65 | -1.69E-46 |
| MS.gene059718 | MS.gene97396 | 0.857488 | 1.58E-62 | -1.69E-46 |
| MS.gene059801 | MS.gene97396 | 0.806331 | 8.66E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene97396 | 0.852218 | 5.33E-61 | -1.69E-46 |
| MS.gene059902 | MS.gene97396 | 0.827453 | 1.55E-54 | -1.69E-46 |
| MS.gene060341 | MS.gene97396 | 0.83983 | 1.25E-57 | -1.69E-46 |
| MS.gene060703 | MS.gene97396 | 0.862157 | 6.18E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene97396 | 0.888806 | 4.26E-73 | -1.69E-46 |
| MS.gene06077 | MS.gene97396 | 0.821799 | 3.33E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene97396 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene97396 | 0.818884 | 1.55E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene97396 | 0.828197 | 1.03E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene97396 | 0.801708 | 7.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97396.t1 | MTR_3g015440 | 89.412 | 85 | 9 | 0 | 1 | 85 | 143 | 227 | 2.95e-52 | 163 |
| MS.gene97396.t1 | MTR_3g015440 | 82.979 | 47 | 8 | 0 | 1 | 47 | 143 | 189 | 7.69e-23 | 87.8 |
| MS.gene97396.t1 | MTR_5g012030 | 43.373 | 83 | 45 | 1 | 1 | 83 | 28 | 108 | 4.58e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97396.t1 | AT3G17670 | 58.824 | 85 | 35 | 0 | 1 | 85 | 136 | 220 | 1.51e-31 | 110 |
| MS.gene97396.t1 | AT3G17670 | 58.824 | 85 | 35 | 0 | 1 | 85 | 136 | 220 | 2.93e-31 | 110 |
| MS.gene97396.t1 | AT1G62740 | 42.169 | 83 | 46 | 1 | 1 | 83 | 28 | 108 | 1.46e-11 | 58.9 |
| MS.gene97396.t1 | AT1G12270 | 40.964 | 83 | 47 | 1 | 1 | 83 | 28 | 108 | 2.89e-11 | 57.8 |
Find 24 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATAGATTTAAAACCATT+TGG | 0.341600 | 3.1:-10101985 | MS.gene97396:CDS |
| GGCATTGAACAAATTCGATT+TGG | 0.354216 | 3.1:-10100643 | MS.gene97396:CDS |
| CTGTCAAGGTGATGCCCATT+TGG | 0.356146 | 3.1:-10100664 | MS.gene97396:CDS |
| CGAATTTGTTCAATGCCAAA+TGG | 0.393150 | 3.1:+10100649 | None:intergenic |
| TTGGGTCACCTCTGAATACT+TGG | 0.395476 | 3.1:+10101778 | None:intergenic |
| CAAATTCGATTTGGCAGAGC+AGG | 0.423742 | 3.1:-10100634 | MS.gene97396:CDS |
| ACTGGAAATGGCAAACTACT+TGG | 0.432811 | 3.1:-10101840 | MS.gene97396:CDS |
| GTTTGCCATTTCCAGTCTTA+CGG | 0.445012 | 3.1:+10101847 | None:intergenic |
| GTCATCCGTAAGACTGGAAA+TGG | 0.453951 | 3.1:-10101852 | MS.gene97396:CDS |
| CCGTCAGTCTAAATCATTCA+AGG | 0.480103 | 3.1:-10100577 | None:intergenic |
| GAATTTGTTCAATGCCAAAT+GGG | 0.511521 | 3.1:+10100650 | None:intergenic |
| ATTCAGGTCATCCGTAAGAC+TGG | 0.532385 | 3.1:-10101858 | MS.gene97396:intron |
| AAGCATCCTTAGCATCTTCG+AGG | 0.540528 | 3.1:+10101813 | None:intergenic |
| ATAGATTTAAAACCATTTGG+AGG | 0.543444 | 3.1:-10101982 | MS.gene97396:CDS |
| GTGACATGTATACCTCCAAA+TGG | 0.550224 | 3.1:+10101970 | None:intergenic |
| GGGTGCCCTCGAAGATGCTA+AGG | 0.560777 | 3.1:-10101819 | MS.gene97396:CDS |
| TTGCAGGCTTATATCTGTCA+AGG | 0.572022 | 3.1:-10100678 | MS.gene97396:intron |
| CTGGAAATGGCAAACTACTT+GGG | 0.572784 | 3.1:-10101839 | MS.gene97396:CDS |
| TACATGTCACATATAAATGC+AGG | 0.573446 | 3.1:-10101957 | MS.gene97396:intron |
| TGGGTCACCTCTGAATACTT+GGG | 0.585710 | 3.1:+10101779 | None:intergenic |
| GATTTAGACTGACGGATCGA+AGG | 0.592838 | 3.1:+10100585 | None:intergenic |
| CCTTGAATGATTTAGACTGA+CGG | 0.623941 | 3.1:+10100577 | None:intergenic |
| AGCATCCTTAGCATCTTCGA+GGG | 0.633887 | 3.1:+10101814 | None:intergenic |
| ATTAGCTCCCAAGTATTCAG+AGG | 0.657616 | 3.1:-10101786 | MS.gene97396:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATTATTATATGTATAT+TGG | - | chr3.1:10100645-10100664 | MS.gene97396:CDS | 10.0% |
| !! | ATTTGTAATAACAAGTTAAA+TGG | - | chr3.1:10101069-10101088 | MS.gene97396:intron | 15.0% |
| !! | AAGAAAAGAATATGAGAATT+TGG | + | chr3.1:10100807-10100826 | None:intergenic | 20.0% |
| !! | ACAAAATTATAAGCTGATAT+TGG | - | chr3.1:10101322-10101341 | MS.gene97396:intron | 20.0% |
| !! | AGAAAAGAATATGAGAATTT+GGG | + | chr3.1:10100806-10100825 | None:intergenic | 20.0% |
| !! | AGCATTTGTAATTAATAAAG+TGG | + | chr3.1:10101026-10101045 | None:intergenic | 20.0% |
| !!! | CTTTCTTATTGTTCTTATTT+CGG | - | chr3.1:10100681-10100700 | MS.gene97396:intron | 20.0% |
| !!! | TTTCAAAACACTTGTTATAT+TGG | + | chr3.1:10101105-10101124 | None:intergenic | 20.0% |
| ! | AAATTTCAAGATTTGAACTC+CGG | - | chr3.1:10100929-10100948 | MS.gene97396:intron | 25.0% |
| ! | AACAAAGTTGACAAAAATAG+TGG | - | chr3.1:10101412-10101431 | MS.gene97396:intron | 25.0% |
| ! | ACTAGAAACTAATATGGATT+GGG | - | chr3.1:10101529-10101548 | MS.gene97396:intron | 25.0% |
| ! | ATATCAATATATGCAATGAC+CGG | + | chr3.1:10100951-10100970 | None:intergenic | 25.0% |
| ! | ATTCACTAACTACCTAAATA+TGG | + | chr3.1:10101642-10101661 | None:intergenic | 25.0% |
| ! | ATTGATGTTTGTTTAAATGC+AGG | + | chr3.1:10101801-10101820 | None:intergenic | 25.0% |
| ! | TATTTCTTTATTCACTTTGC+AGG | - | chr3.1:10101869-10101888 | MS.gene97396:intron | 25.0% |
| ! | TTCACTAACTACCTAAATAT+GGG | + | chr3.1:10101641-10101660 | None:intergenic | 25.0% |
| ! | TTGTAATTAATAAAGTGGCA+AGG | + | chr3.1:10101021-10101040 | None:intergenic | 25.0% |
| !! | ATAAGAATTGATTTAGCAGT+CGG | + | chr3.1:10101240-10101259 | None:intergenic | 25.0% |
| !! | ATAGATTTAAAACCATTTGG+AGG | - | chr3.1:10100581-10100600 | MS.gene97396:CDS | 25.0% |
| !! | GCTATAGATTTAAAACCATT+TGG | - | chr3.1:10100578-10100597 | MS.gene97396:CDS | 25.0% |
| !!! | GATAATAGGATATTGATTCT+AGG | + | chr3.1:10100838-10100857 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTGATCCTTTTG+AGG | - | chr3.1:10101139-10101158 | MS.gene97396:intron | 25.0% |
| !!! | TAGTTTTTAGCAAGGATAAT+AGG | + | chr3.1:10100852-10100871 | None:intergenic | 25.0% |
| CACTAGAAACTAATATGGAT+TGG | - | chr3.1:10101528-10101547 | MS.gene97396:intron | 30.0% | |
| CTTCAAATACTTATACGGAA+AGG | + | chr3.1:10101169-10101188 | None:intergenic | 30.0% | |
| TACATGTCACATATAAATGC+AGG | - | chr3.1:10100606-10100625 | MS.gene97396:CDS | 30.0% | |
| TTGAGTTAGCATTAAGAACA+TGG | + | chr3.1:10101602-10101621 | None:intergenic | 30.0% | |
| ! | AATGTCACAACAAGAGATTT+TGG | - | chr3.1:10101699-10101718 | MS.gene97396:intron | 30.0% |
| ! | GAATTTGTTCAATGCCAAAT+GGG | + | chr3.1:10101916-10101935 | None:intergenic | 30.0% |
| ! | TCTTGAAATTTCTAGACTCT+AGG | + | chr3.1:10100920-10100939 | None:intergenic | 30.0% |
| !! | CAGAATCTTGAGTTATTTTG+AGG | + | chr3.1:10101355-10101374 | None:intergenic | 30.0% |
| !!! | GTTACTAGTAGTTTTTAGCA+AGG | + | chr3.1:10100860-10100879 | None:intergenic | 30.0% |
| AAATAGTGGCTACGAAGTTT+AGG | - | chr3.1:10101426-10101445 | MS.gene97396:intron | 35.0% | |
| AACATACGATCTACAGGTAT+CGG | - | chr3.1:10101571-10101590 | MS.gene97396:intron | 35.0% | |
| AATGATCATACCCACATTGA+TGG | + | chr3.1:10101758-10101777 | None:intergenic | 35.0% | |
| ACTGAGATTCAAATCGTGAT+TGG | - | chr3.1:10101201-10101220 | MS.gene97396:intron | 35.0% | |
| ATGCGCACTAGAAACTAATA+TGG | - | chr3.1:10101523-10101542 | MS.gene97396:intron | 35.0% | |
| CCGTGCTTCAAATACTTATA+CGG | + | chr3.1:10101174-10101193 | None:intergenic | 35.0% | |
| CTAATTGTTGCCAAAATCCA+TGG | - | chr3.1:10101672-10101691 | MS.gene97396:intron | 35.0% | |
| GTCACATATAAATGCAGGTA+CGG | - | chr3.1:10100611-10100630 | MS.gene97396:CDS | 35.0% | |
| TAAATATGGGAAACACGCAT+GGG | + | chr3.1:10101628-10101647 | None:intergenic | 35.0% | |
| TAAGCTTAGCTAAACTGCTA+AGG | + | chr3.1:10100986-10101005 | None:intergenic | 35.0% | |
| TGAATCAACATACGATCTAC+AGG | - | chr3.1:10101565-10101584 | MS.gene97396:intron | 35.0% | |
| ! | CCGTATAAGTATTTGAAGCA+CGG | - | chr3.1:10101171-10101190 | MS.gene97396:intron | 35.0% |
| ! | CGAATTTGTTCAATGCCAAA+TGG | + | chr3.1:10101917-10101936 | None:intergenic | 35.0% |
| ! | GGCATTGAACAAATTCGATT+TGG | - | chr3.1:10101920-10101939 | MS.gene97396:intron | 35.0% |
| ! | TTGTTCTTATTTCGGCATTC+AGG | - | chr3.1:10100689-10100708 | MS.gene97396:intron | 35.0% |
| !! | ACAACAAGAGATTTTGGTCT+TGG | - | chr3.1:10101705-10101724 | MS.gene97396:intron | 35.0% |
| !! | TTTCTAGTGCGCATCTATTT+TGG | + | chr3.1:10101517-10101536 | None:intergenic | 35.0% |
| ACTGGAAATGGCAAACTACT+TGG | - | chr3.1:10100723-10100742 | MS.gene97396:intron | 40.0% | |
| ATTAGCTCCCAAGTATTCAG+AGG | - | chr3.1:10100777-10100796 | MS.gene97396:intron | 40.0% | |
| CATGCGTGTTTCCCATATTT+AGG | - | chr3.1:10101627-10101646 | MS.gene97396:intron | 40.0% | |
| CCGTCAGTCTAAATCATTCA+AGG | - | chr3.1:10101986-10102005 | MS.gene97396:CDS | 40.0% | |
| CTAAATATGGGAAACACGCA+TGG | + | chr3.1:10101629-10101648 | None:intergenic | 40.0% | |
| CTGGAAATGGCAAACTACTT+GGG | - | chr3.1:10100724-10100743 | MS.gene97396:intron | 40.0% | |
| GTGACATGTATACCTCCAAA+TGG | + | chr3.1:10100596-10100615 | None:intergenic | 40.0% | |
| TCTAGACTCTAGGCTAAAAG+TGG | + | chr3.1:10100910-10100929 | None:intergenic | 40.0% | |
| TTGCAGGCTTATATCTGTCA+AGG | - | chr3.1:10101885-10101904 | MS.gene97396:intron | 40.0% | |
| TTGTTGTGACATTGTAGCCA+TGG | + | chr3.1:10101692-10101711 | None:intergenic | 40.0% | |
| ! | ATCATACCCACATTGATGGT+AGG | + | chr3.1:10101754-10101773 | None:intergenic | 40.0% |
| ! | GACATTGTAGCCATGGATTT+TGG | + | chr3.1:10101685-10101704 | None:intergenic | 40.0% |
| ! | GTTTGCCATTTCCAGTCTTA+CGG | + | chr3.1:10100719-10100738 | None:intergenic | 40.0% |
| AAGCATCCTTAGCATCTTCG+AGG | + | chr3.1:10100753-10100772 | None:intergenic | 45.0% | |
| ACGGAAAGGTGAACCTCAAA+AGG | + | chr3.1:10101155-10101174 | None:intergenic | 45.0% | |
| ACTCTAGGCTAAAAGTGGCA+AGG | + | chr3.1:10100905-10100924 | None:intergenic | 45.0% | |
| AGCATCCTTAGCATCTTCGA+GGG | + | chr3.1:10100752-10100771 | None:intergenic | 45.0% | |
| ATTCAGGTCATCCGTAAGAC+TGG | - | chr3.1:10100705-10100724 | MS.gene97396:intron | 45.0% | |
| GCAGTTTAGCTAAGCTTACG+AGG | - | chr3.1:10100988-10101007 | MS.gene97396:intron | 45.0% | |
| GTCATCCGTAAGACTGGAAA+TGG | - | chr3.1:10100711-10100730 | MS.gene97396:intron | 45.0% | |
| TGCAGGCACAACAAATACAC+AGG | + | chr3.1:10101784-10101803 | None:intergenic | 45.0% | |
| TGCCTACCTACCATCAATGT+GGG | - | chr3.1:10101745-10101764 | MS.gene97396:intron | 45.0% | |
| TGGGTCACCTCTGAATACTT+GGG | + | chr3.1:10100787-10100806 | None:intergenic | 45.0% | |
| TTGCCTACCTACCATCAATG+TGG | - | chr3.1:10101744-10101763 | MS.gene97396:intron | 45.0% | |
| TTGGGTCACCTCTGAATACT+TGG | + | chr3.1:10100788-10100807 | None:intergenic | 45.0% | |
| ! | GATTTAGACTGACGGATCGA+AGG | + | chr3.1:10101981-10102000 | None:intergenic | 45.0% |
| ! | TACCCACATTGATGGTAGGT+AGG | + | chr3.1:10101750-10101769 | None:intergenic | 45.0% |
| !! | CAAATTCGATTTGGCAGAGC+AGG | - | chr3.1:10101929-10101948 | MS.gene97396:intron | 45.0% |
| !! | AATAAATTAATAATGATTTA+CGG | - | chr3.1:10101830-10101849 | MS.gene97396:CDS | 5.0% |
| CTGTCAAGGTGATGCCCATT+TGG | - | chr3.1:10101899-10101918 | MS.gene97396:intron | 50.0% | |
| GGGTGCCCTCGAAGATGCTA+AGG | - | chr3.1:10100744-10100763 | MS.gene97396:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10100578 | 10102007 | 10100578 | ID=MS.gene97396 |
| chr3.1 | mRNA | 10100578 | 10102007 | 10100578 | ID=MS.gene97396.t1;Parent=MS.gene97396 |
| chr3.1 | exon | 10101958 | 10102007 | 10101958 | ID=MS.gene97396.t1.exon1;Parent=MS.gene97396.t1 |
| chr3.1 | CDS | 10101958 | 10102007 | 10101958 | ID=cds.MS.gene97396.t1;Parent=MS.gene97396.t1 |
| chr3.1 | exon | 10101787 | 10101874 | 10101787 | ID=MS.gene97396.t1.exon2;Parent=MS.gene97396.t1 |
| chr3.1 | CDS | 10101787 | 10101874 | 10101787 | ID=cds.MS.gene97396.t1;Parent=MS.gene97396.t1 |
| chr3.1 | exon | 10100578 | 10100694 | 10100578 | ID=MS.gene97396.t1.exon3;Parent=MS.gene97396.t1 |
| chr3.1 | CDS | 10100578 | 10100694 | 10100578 | ID=cds.MS.gene97396.t1;Parent=MS.gene97396.t1 |
| Gene Sequence |
| Protein sequence |
