Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98543.t1 | XP_013454279.1 | 95.6 | 880 | 39 | 0 | 1 | 880 | 1 | 880 | 0.00E+00 | 1468.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98543.t1 | Q9C895 | 52.6 | 903 | 402 | 5 | 1 | 880 | 1 | 900 | 6.2e-216 | 752.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98543.t1 | A0A072UR29 | 95.6 | 880 | 39 | 0 | 1 | 880 | 1 | 880 | 0.0e+00 | 1468.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene98543 | 0.845072 | 5.10E-59 | -1.69E-46 |
| MS.gene049230 | MS.gene98543 | 0.829639 | 4.60E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene98543 | 0.856005 | 4.31E-62 | -1.69E-46 |
| MS.gene049435 | MS.gene98543 | 0.819587 | 1.07E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene98543 | 0.814165 | 1.77E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene98543 | 0.852128 | 5.66E-61 | -1.69E-46 |
| MS.gene050227 | MS.gene98543 | 0.857204 | 1.91E-62 | -1.69E-46 |
| MS.gene050228 | MS.gene98543 | 0.862348 | 5.40E-64 | -1.69E-46 |
| MS.gene050438 | MS.gene98543 | 0.821394 | 4.13E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene98543 | 0.865562 | 5.40E-65 | -1.69E-46 |
| MS.gene050605 | MS.gene98543 | 0.844366 | 7.90E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene98543 | -0.884295 | 2.17E-71 | -1.69E-46 |
| MS.gene050642 | MS.gene98543 | 0.835681 | 1.46E-56 | -1.69E-46 |
| MS.gene050680 | MS.gene98543 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene98543 | 0.839384 | 1.64E-57 | -1.69E-46 |
| MS.gene050721 | MS.gene98543 | 0.838085 | 3.54E-57 | -1.69E-46 |
| MS.gene050724 | MS.gene98543 | 0.837889 | 3.98E-57 | -1.69E-46 |
| MS.gene050750 | MS.gene98543 | 0.814071 | 1.86E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene98543 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene98543 | 0.831509 | 1.60E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene98543 | 0.831978 | 1.23E-55 | -1.69E-46 |
| MS.gene050780 | MS.gene98543 | 0.829485 | 5.01E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene98543 | 0.817673 | 2.92E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene98543 | 0.800555 | 1.36E-48 | -1.69E-46 |
| MS.gene051210 | MS.gene98543 | 0.823662 | 1.23E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene98543 | 0.808018 | 3.81E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene98543 | 0.836797 | 7.58E-57 | -1.69E-46 |
| MS.gene051983 | MS.gene98543 | 0.851375 | 9.25E-61 | -1.69E-46 |
| MS.gene052012 | MS.gene98543 | 0.845078 | 5.08E-59 | -1.69E-46 |
| MS.gene05215 | MS.gene98543 | 0.811361 | 7.28E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene98543 | 0.804185 | 2.44E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene98543 | 0.81677 | 4.66E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene98543 | 0.811985 | 5.32E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene98543 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene98543 | 0.810083 | 1.38E-50 | -1.69E-46 |
| MS.gene05288 | MS.gene98543 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene98543 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene053008 | MS.gene98543 | 0.83307 | 6.59E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene98543 | 0.827537 | 1.48E-54 | -1.69E-46 |
| MS.gene053184 | MS.gene98543 | 0.801368 | 9.30E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene98543 | 0.804426 | 2.17E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene98543 | 0.82318 | 1.59E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene98543 | 0.80645 | 8.18E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene98543 | 0.827507 | 1.51E-54 | -1.69E-46 |
| MS.gene054405 | MS.gene98543 | 0.811782 | 5.89E-51 | -1.69E-46 |
| MS.gene054433 | MS.gene98543 | 0.813755 | 2.18E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene98543 | 0.811955 | 5.40E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene98543 | 0.838435 | 2.88E-57 | -1.69E-46 |
| MS.gene054472 | MS.gene98543 | 0.819077 | 1.40E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene98543 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene98543 | 0.837098 | 6.35E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene98543 | 0.826533 | 2.58E-54 | -1.69E-46 |
| MS.gene054658 | MS.gene98543 | 0.830381 | 3.03E-55 | -1.69E-46 |
| MS.gene05468 | MS.gene98543 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene98543 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene98543 | 0.841416 | 4.82E-58 | -1.69E-46 |
| MS.gene05517 | MS.gene98543 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene055222 | MS.gene98543 | 0.800813 | 1.21E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene98543 | 0.815717 | 8.01E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene98543 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene98543 | 0.820795 | 5.68E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene98543 | 0.829599 | 4.70E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene98543 | 0.863984 | 1.68E-64 | -1.69E-46 |
| MS.gene055818 | MS.gene98543 | 0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene98543 | 0.810727 | 9.98E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene98543 | 0.834999 | 2.17E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene98543 | 0.844575 | 6.94E-59 | -1.69E-46 |
| MS.gene056552 | MS.gene98543 | 0.833949 | 3.98E-56 | -1.69E-46 |
| MS.gene056979 | MS.gene98543 | 0.840246 | 9.76E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene98543 | 0.844267 | 8.40E-59 | -1.69E-46 |
| MS.gene057140 | MS.gene98543 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene98543 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene057394 | MS.gene98543 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene057395 | MS.gene98543 | 0.809048 | 2.29E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene98543 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene98543 | 0.814927 | 1.20E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene98543 | 0.85607 | 4.12E-62 | -1.69E-46 |
| MS.gene058399 | MS.gene98543 | 0.822034 | 2.94E-53 | -1.69E-46 |
| MS.gene058435 | MS.gene98543 | 0.82278 | 1.97E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene98543 | 0.803896 | 2.80E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene98543 | 0.835804 | 1.36E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene98543 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene98543 | 0.813237 | 2.83E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene98543 | 0.835677 | 1.46E-56 | -1.69E-46 |
| MS.gene059249 | MS.gene98543 | 0.827575 | 1.45E-54 | -1.69E-46 |
| MS.gene059569 | MS.gene98543 | 0.812666 | 3.78E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene98543 | 0.844097 | 9.34E-59 | -1.69E-46 |
| MS.gene059725 | MS.gene98543 | 0.820365 | 7.13E-53 | -1.69E-46 |
| MS.gene05979 | MS.gene98543 | 0.807935 | 3.96E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene98543 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene98543 | 0.839023 | 2.03E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene98543 | 0.816818 | 4.54E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene98543 | 0.844112 | 9.25E-59 | -1.69E-46 |
| MS.gene060637 | MS.gene98543 | 0.812171 | 4.85E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene98543 | 0.847737 | 9.57E-60 | -1.69E-46 |
| MS.gene060685 | MS.gene98543 | 0.84597 | 2.91E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene98543 | 0.851669 | 7.64E-61 | -1.69E-46 |
| MS.gene060803 | MS.gene98543 | 0.87194 | 4.66E-67 | -1.69E-46 |
| MS.gene060907 | MS.gene98543 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene98543 | 0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene060942 | MS.gene98543 | 0.826521 | 2.59E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene98543 | 0.862463 | 4.98E-64 | -1.69E-46 |
| MS.gene061002 | MS.gene98543 | 0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene98543 | -0.814634 | 1.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98543.t1 | MTR_5g085010 | 96.591 | 880 | 30 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1728 |
| MS.gene98543.t1 | MTR_1g068830 | 89.659 | 880 | 91 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1496 |
| MS.gene98543.t1 | MTR_7g046250 | 31.058 | 879 | 598 | 6 | 4 | 880 | 5 | 877 | 1.21e-123 | 395 |
| MS.gene98543.t1 | MTR_7g046250 | 31.704 | 716 | 482 | 5 | 4 | 718 | 5 | 714 | 4.61e-95 | 314 |
| MS.gene98543.t1 | MTR_3g060950 | 73.203 | 153 | 24 | 3 | 711 | 861 | 61 | 198 | 2.33e-60 | 204 |
| MS.gene98543.t1 | MTR_5g065520 | 40.597 | 335 | 97 | 9 | 275 | 593 | 1 | 249 | 1.74e-46 | 172 |
| MS.gene98543.t1 | MTR_8g064230 | 82.143 | 84 | 15 | 0 | 252 | 335 | 2 | 85 | 2.58e-38 | 137 |
| MS.gene98543.t1 | MTR_5g065540 | 85.106 | 47 | 7 | 0 | 47 | 93 | 12 | 58 | 1.77e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98543.t1 | AT1G55250 | 54.422 | 882 | 399 | 3 | 1 | 880 | 1 | 881 | 0.0 | 917 |
| MS.gene98543.t1 | AT1G55250 | 53.215 | 902 | 397 | 6 | 1 | 880 | 1 | 899 | 0.0 | 899 |
| MS.gene98543.t1 | AT1G55250 | 52.935 | 903 | 399 | 5 | 1 | 880 | 1 | 900 | 0.0 | 894 |
| MS.gene98543.t1 | AT1G55250 | 58.421 | 380 | 157 | 1 | 502 | 880 | 4 | 383 | 6.36e-143 | 429 |
| MS.gene98543.t1 | AT1G55250 | 56.345 | 394 | 157 | 2 | 502 | 880 | 4 | 397 | 1.09e-138 | 418 |
| MS.gene98543.t1 | AT2G44950 | 30.499 | 882 | 595 | 11 | 8 | 880 | 6 | 878 | 3.17e-118 | 380 |
| MS.gene98543.t1 | AT2G44950 | 29.552 | 670 | 455 | 10 | 8 | 669 | 6 | 666 | 2.40e-74 | 257 |
Find 159 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCCTCCACAGAATCTTTC+TGG | 0.139617 | 5.2:+72462986 | None:intergenic |
| GATCTTGTATAGCCTGTTTC+TGG | 0.173211 | 5.2:+72463501 | None:intergenic |
| CAGAATTCAGCTCAGCAATT+TGG | 0.247609 | 5.2:+72452792 | None:intergenic |
| GCTGAACAAGCTGCTGATTC+TGG | 0.251145 | 5.2:+72463534 | None:intergenic |
| GAAGGAATTGAATTCTAAAT+TGG | 0.256444 | 5.2:-72457574 | MS.gene98543:CDS |
| TCAACATTGGATTGCTGAAT+TGG | 0.266671 | 5.2:-72457789 | MS.gene98543:CDS |
| TTTGTAGCTGGTTGATGATA+TGG | 0.269147 | 5.2:-72463234 | MS.gene98543:intron |
| CTTTGCGTCGGTTATCTACT+AGG | 0.292056 | 5.2:-72462921 | MS.gene98543:CDS |
| ACCTTTCATTTGCATCAAAC+TGG | 0.292093 | 5.2:+72455189 | None:intergenic |
| GTTACAGATTGAAAAGTTAC+AGG | 0.298097 | 5.2:-72456250 | MS.gene98543:intron |
| GATTGATGATATGACGAAAA+AGG | 0.308345 | 5.2:-72462649 | MS.gene98543:CDS |
| TCAGGAGTTAGAATTTGTTT+TGG | 0.321414 | 5.2:-72456220 | MS.gene98543:CDS |
| AAAAGATTCTTTGAAAACTT+TGG | 0.324595 | 5.2:-72463183 | MS.gene98543:CDS |
| AGCACTCGTCTATATAATTC+TGG | 0.335894 | 5.2:+72462559 | None:intergenic |
| TCTGACATAAAACAACTTAC+AGG | 0.344586 | 5.2:-72462525 | MS.gene98543:intron |
| TTCCCACCTGGCAAACTCTA+AGG | 0.353582 | 5.2:+72453587 | None:intergenic |
| TTTCTGAGCTTCAAGATTCC+CGG | 0.355151 | 5.2:-72458031 | MS.gene98543:CDS |
| CTTTCAGATTCTCTAACTTC+TGG | 0.356059 | 5.2:+72455356 | None:intergenic |
| AGATGAGGCTTCTTCTTGTC+TGG | 0.356679 | 5.2:+72464604 | None:intergenic |
| CTCTAGACCATGTTCATCTA+AGG | 0.361421 | 5.2:+72455298 | None:intergenic |
| AAAGTTACAGGAGGAGAATC+AGG | 0.371139 | 5.2:-72456238 | MS.gene98543:CDS |
| AAGCTGAAATAGAAGAGTTA+AGG | 0.371256 | 5.2:-72455214 | MS.gene98543:CDS |
| AACCTCGATTTCAGATATAT+AGG | 0.375681 | 5.2:+72454778 | None:intergenic |
| CATCCCCATTTCTTTAGATA+AGG | 0.377185 | 5.2:+72457295 | None:intergenic |
| GCTCTCTCTGCAGGCTTCTC+AGG | 0.381182 | 5.2:+72458197 | None:intergenic |
| CAAAGGATCAACTTCAACAT+TGG | 0.382751 | 5.2:-72457802 | MS.gene98543:CDS |
| TGCAAACAAATGTGCTGAAC+AGG | 0.382951 | 5.2:-72456544 | MS.gene98543:CDS |
| AAAGATATCAAAGCTGAGTT+TGG | 0.385405 | 5.2:-72457332 | MS.gene98543:CDS |
| TTCAGCCTTATCTAAAGAAA+TGG | 0.386599 | 5.2:-72457300 | MS.gene98543:CDS |
| TTCCTTTCCTTCGTGTCCTC+CGG | 0.387864 | 5.2:-72463034 | MS.gene98543:CDS |
| CAGGACTAACATTGCAAAAC+GGG | 0.396999 | 5.2:-72457598 | MS.gene98543:CDS |
| AGAGTTTGCCAGGTGGGAAT+TGG | 0.397987 | 5.2:-72453583 | MS.gene98543:CDS |
| AAAGCAATTTGAGGAACTTC+AGG | 0.401444 | 5.2:-72457988 | MS.gene98543:intron |
| CACTTCCCGAGTATACTCTT+TGG | 0.403272 | 5.2:-72457825 | MS.gene98543:CDS |
| CCTGCCTGTGGAACAGCATT+TGG | 0.404398 | 5.2:-72452277 | MS.gene98543:CDS |
| GTTGATGATATGGCTCTTCT+CGG | 0.410027 | 5.2:-72463224 | MS.gene98543:CDS |
| TCTTCTACTCTCTTCAAGTT+CGG | 0.410715 | 5.2:+72458304 | None:intergenic |
| TCAGCCTTATCTAAAGAAAT+GGG | 0.420197 | 5.2:-72457299 | MS.gene98543:CDS |
| GAAGCTTGAGGAAGAACTAA+TGG | 0.422228 | 5.2:-72452825 | MS.gene98543:CDS |
| AGCTGAAATAGAAGAGTTAA+GGG | 0.422995 | 5.2:-72455213 | MS.gene98543:CDS |
| ACACAGACCAGTATCTTGTT+TGG | 0.429741 | 5.2:+72457431 | None:intergenic |
| TGCTTCCTCCAGGCTGATGC+AGG | 0.438735 | 5.2:-72463569 | MS.gene98543:intron |
| CAGCCGCCTTAGAGTTTGCC+AGG | 0.439108 | 5.2:-72453593 | MS.gene98543:CDS |
| AGATACTGTTGATGATCATA+TGG | 0.440228 | 5.2:-72462878 | MS.gene98543:CDS |
| GCAGACAGAAGTCCAGAAAC+AGG | 0.440620 | 5.2:-72463513 | MS.gene98543:CDS |
| GCTCTTCTCGGGATACAAGC+TGG | 0.449889 | 5.2:-72463212 | MS.gene98543:CDS |
| CTCTTTAGCTTTAATAGCCT+CGG | 0.449984 | 5.2:+72454814 | None:intergenic |
| CAAATGTGCTGAACAGGATT+CGG | 0.450852 | 5.2:-72456538 | MS.gene98543:CDS |
| TCAAGATTTCTTTGTATGCA+TGG | 0.451174 | 5.2:+72452319 | None:intergenic |
| AATATTGACAAAGCAATTTG+AGG | 0.451416 | 5.2:-72457997 | MS.gene98543:CDS |
| ATCTAAAGAAATGGGGATGA+TGG | 0.454064 | 5.2:-72457291 | MS.gene98543:CDS |
| AATTACAAATAGTGAAGAAC+AGG | 0.462184 | 5.2:-72453771 | MS.gene98543:intron |
| GTTCAGCACATTTGTTTGCA+AGG | 0.462913 | 5.2:+72456547 | None:intergenic |
| CGTGAGACGCGGGAAGAAAC+GGG | 0.463036 | 5.2:+72464574 | None:intergenic |
| TCCGTTCACTGCATCAGCAT+TGG | 0.477019 | 5.2:+72458229 | None:intergenic |
| CCTTTCATTTGCATCAAACT+GGG | 0.477201 | 5.2:+72455190 | None:intergenic |
| AATGCAAAAGGATGCCGCTA+TGG | 0.481400 | 5.2:-72458264 | MS.gene98543:CDS |
| TCGTGAGACGCGGGAAGAAA+CGG | 0.486950 | 5.2:+72464573 | None:intergenic |
| CTACATAGAAGTAGATCATC+CGG | 0.493035 | 5.2:+72463015 | None:intergenic |
| TTATATCATGCAGGAGTTCA+CGG | 0.493537 | 5.2:-72452850 | MS.gene98543:intron |
| CGCCTTAGAGTTTGCCAGGT+GGG | 0.494648 | 5.2:-72453589 | MS.gene98543:CDS |
| TTCCACAGGCAGGACATTTG+CGG | 0.497983 | 5.2:+72452287 | None:intergenic |
| GAAGCCTGCAGAGAGAGCTA+TGG | 0.498135 | 5.2:-72458192 | MS.gene98543:CDS |
| ATGGAAAGAATTGAGGATAT+AGG | 0.501506 | 5.2:-72462859 | MS.gene98543:CDS |
| AGGCAGGACATTTGCGGTGA+CGG | 0.501630 | 5.2:+72452293 | None:intergenic |
| CGAGGCTATTAAAGCTAAAG+AGG | 0.502369 | 5.2:-72454813 | MS.gene98543:CDS |
| CTGTCCAAATGCTGTTCCAC+AGG | 0.503225 | 5.2:+72452273 | None:intergenic |
| AAGTACCTTCAGGATTATCA+AGG | 0.503978 | 5.2:+72463156 | None:intergenic |
| ATGCAAAAGGATGCCGCTAT+GGG | 0.504470 | 5.2:-72458263 | MS.gene98543:CDS |
| CTCTTCTCGGGATACAAGCT+GGG | 0.505460 | 5.2:-72463211 | MS.gene98543:CDS |
| CCTTTGCCAAAGAGTATACT+CGG | 0.508295 | 5.2:+72457819 | None:intergenic |
| GCAGGACTAACATTGCAAAA+CGG | 0.510569 | 5.2:-72457599 | MS.gene98543:CDS |
| AATCACTTCACGAAAATTGT+CGG | 0.513242 | 5.2:+72462623 | None:intergenic |
| CCCAGTTTGATGCAAATGAA+AGG | 0.514393 | 5.2:-72455190 | MS.gene98543:intron |
| CCAAATGCTGTTCCACAGGC+AGG | 0.515641 | 5.2:+72452277 | None:intergenic |
| GTTCACTGCATCAGCATTGG+AGG | 0.516207 | 5.2:+72458232 | None:intergenic |
| GCCTGGAGGATTATCAGAAA+AGG | 0.516683 | 5.2:-72456188 | MS.gene98543:intron |
| GAAGAGGCCAAACAAGATAC+TGG | 0.517357 | 5.2:-72457438 | MS.gene98543:intron |
| AAAAGGAATTGGATAGTGAA+AGG | 0.522583 | 5.2:-72453467 | MS.gene98543:intron |
| TTCTGAGCTTCAAGATTCCC+GGG | 0.523846 | 5.2:-72458030 | MS.gene98543:CDS |
| ATCATTGACAGAGTCTCTGC+AGG | 0.528509 | 5.2:-72457756 | MS.gene98543:intron |
| AGTCAGTCTGAAAATGCAAA+AGG | 0.529585 | 5.2:-72458276 | MS.gene98543:CDS |
| AAGAATTGAGGATATAGGTC+AGG | 0.532464 | 5.2:-72462854 | MS.gene98543:CDS |
| TGCAAAAGTGTATTAATGAA+AGG | 0.535858 | 5.2:-72457482 | MS.gene98543:CDS |
| TTTGCGTCGGTTATCTACTA+GGG | 0.536181 | 5.2:-72462920 | MS.gene98543:CDS |
| CATATGTATTATACCTTCCG+TGG | 0.537093 | 5.2:+72462813 | None:intergenic |
| AAGCCTGCAGAGAGAGCTAT+GGG | 0.539173 | 5.2:-72458191 | MS.gene98543:CDS |
| AATCAACCAACACTGGGATC+AGG | 0.540393 | 5.2:-72463417 | MS.gene98543:intron |
| TAATTGCAATCAACCAACAC+TGG | 0.541368 | 5.2:-72463424 | MS.gene98543:CDS |
| AAACCCATAGCTCTCTCTGC+AGG | 0.543797 | 5.2:+72458188 | None:intergenic |
| TATTAAAGCTAAAGAGGCTG+AGG | 0.549699 | 5.2:-72454807 | MS.gene98543:CDS |
| TCCTAGAGTCAGAAATGTCA+TGG | 0.550226 | 5.2:+72457526 | None:intergenic |
| GGAATTGGCAGATGCTGAGA+AGG | 0.550271 | 5.2:-72453568 | MS.gene98543:CDS |
| TAGATAACCGACGCAAAGCA+AGG | 0.550352 | 5.2:+72462926 | None:intergenic |
| ATCCAGAAAGATTCTGTGGA+GGG | 0.551161 | 5.2:-72462988 | MS.gene98543:CDS |
| GCTTGAATTTCGTGAGACGC+GGG | 0.552167 | 5.2:+72464564 | None:intergenic |
| CTCGGGATACAAGCTGGGAG+AGG | 0.556620 | 5.2:-72463206 | MS.gene98543:CDS |
| TTGATGATATGGCTCTTCTC+GGG | 0.557494 | 5.2:-72463223 | MS.gene98543:CDS |
| AGGAAGCCCTTGCTTTGCGT+CGG | 0.560789 | 5.2:-72462933 | MS.gene98543:CDS |
| CAAAGCTGAGTTTGGTGTGA+TGG | 0.562082 | 5.2:-72457324 | MS.gene98543:CDS |
| TGATCATATGGAAAGAATTG+AGG | 0.563216 | 5.2:-72462866 | MS.gene98543:CDS |
| TCCAATGCTGATGCAGTGAA+CGG | 0.564453 | 5.2:-72458230 | MS.gene98543:CDS |
| GATTACCTTGATAATCCTGA+AGG | 0.565357 | 5.2:-72463161 | MS.gene98543:intron |
| TAACATTGCAAAACGGGAGA+AGG | 0.566402 | 5.2:-72457592 | MS.gene98543:CDS |
| AGCATCTGCCAATTCCCACC+TGG | 0.566723 | 5.2:+72453575 | None:intergenic |
| TCCATGACATTTCTGACTCT+AGG | 0.566902 | 5.2:-72457527 | MS.gene98543:CDS |
| CACGAAGATTTATCCACGGA+AGG | 0.568556 | 5.2:-72462826 | MS.gene98543:intron |
| CGAGATTACTAATTATGTTG+AGG | 0.568617 | 5.2:-72462953 | MS.gene98543:CDS |
| CTGAAGCTGCTTGTGAACAA+AGG | 0.572664 | 5.2:-72455250 | MS.gene98543:CDS |
| GAGGGAGGACTGTAATATCA+AGG | 0.573477 | 5.2:-72454594 | MS.gene98543:intron |
| TTCAATTGAATTCTTCAACT+CGG | 0.577121 | 5.2:+72458163 | None:intergenic |
| CCAACGTCTATTACAGCAAG+TGG | 0.577654 | 5.2:-72454621 | MS.gene98543:CDS |
| CCGAGTATACTCTTTGGCAA+AGG | 0.579298 | 5.2:-72457819 | MS.gene98543:CDS |
| TCTTGAAATCAAGATGGAAG+AGG | 0.579606 | 5.2:-72457454 | MS.gene98543:CDS |
| ATCCGGAGGACACGAAGGAA+AGG | 0.581923 | 5.2:+72463032 | None:intergenic |
| ATTACAGCAAGTGGCTGAGA+GGG | 0.584569 | 5.2:-72454612 | MS.gene98543:CDS |
| AATAAAGTCGTCAAAAGCAA+TGG | 0.585648 | 5.2:-72456514 | MS.gene98543:intron |
| GAATGATCTTGAAATCAAGA+TGG | 0.585926 | 5.2:-72457460 | MS.gene98543:CDS |
| ATATGCCTTGCATTAACCGC+AGG | 0.586555 | 5.2:+72457549 | None:intergenic |
| TGCTTGAATTTCGTGAGACG+CGG | 0.591340 | 5.2:+72464563 | None:intergenic |
| GAAACGGGAGTGAGAAGATG+AGG | 0.598522 | 5.2:+72464589 | None:intergenic |
| CGCTAAGAGAGAAATTGAGT+GGG | 0.598649 | 5.2:-72457202 | MS.gene98543:CDS |
| TACTCTCCGTGCAAAACACA+AGG | 0.599567 | 5.2:-72462598 | MS.gene98543:CDS |
| AACCTATATATCTGAAATCG+AGG | 0.599571 | 5.2:-72454780 | MS.gene98543:intron |
| GAATTCAATTGAAGAAGCGA+AGG | 0.600369 | 5.2:-72458153 | MS.gene98543:intron |
| TGGAAACACAGTTGAAGCGA+TGG | 0.602141 | 5.2:-72457271 | MS.gene98543:CDS |
| ATTAATCCAGAAAGATTCTG+TGG | 0.603677 | 5.2:-72462992 | MS.gene98543:CDS |
| CAATAACCTGATCCCAGTGT+TGG | 0.604541 | 5.2:+72463411 | None:intergenic |
| TGGAGCCTGCGGTTAATGCA+AGG | 0.604681 | 5.2:-72457554 | MS.gene98543:CDS |
| AGATAACCGACGCAAAGCAA+GGG | 0.606298 | 5.2:+72462927 | None:intergenic |
| CGAGCAGATTCAGAAAGATG+TGG | 0.606867 | 5.2:-72453499 | MS.gene98543:CDS |
| TCGCTAAGAGAGAAATTGAG+TGG | 0.608930 | 5.2:-72457203 | MS.gene98543:CDS |
| CACCGCAAATGTCCTGCCTG+TGG | 0.609399 | 5.2:-72452289 | MS.gene98543:CDS |
| AAACACAAGGAGTATACTGT+TGG | 0.609461 | 5.2:-72462585 | MS.gene98543:CDS |
| CTGTTCTGACCGTCCAAAGG+AGG | 0.610548 | 5.2:-72452696 | MS.gene98543:intron |
| ACAGCAAGTGGCTGAGAGGG+AGG | 0.618824 | 5.2:-72454609 | MS.gene98543:CDS |
| CTTTGGACGGTCAGAACAGA+CGG | 0.621473 | 5.2:+72452700 | None:intergenic |
| AAGAGAGAAATTGAGTGGGA+AGG | 0.622883 | 5.2:-72457198 | MS.gene98543:intron |
| AGGAGAGTTTGACGAAATCG+TGG | 0.625770 | 5.2:-72458327 | MS.gene98543:CDS |
| CGTCTGTTCTGACCGTCCAA+AGG | 0.628492 | 5.2:-72452699 | MS.gene98543:CDS |
| AATTGCAATCAACCAACACT+GGG | 0.631357 | 5.2:-72463423 | MS.gene98543:CDS |
| GAGTTCACGGAAGAAGCTTG+AGG | 0.633563 | 5.2:-72452837 | MS.gene98543:CDS |
| CAGAAAGATTCTGTGGAGGG+AGG | 0.638260 | 5.2:-72462985 | MS.gene98543:CDS |
| TTTGGACATGTATGGCCTGG+AGG | 0.642076 | 5.2:-72456202 | MS.gene98543:CDS |
| CAGCCTTATCTAAAGAAATG+GGG | 0.644025 | 5.2:-72457298 | MS.gene98543:CDS |
| AATCCAGAAAGATTCTGTGG+AGG | 0.648780 | 5.2:-72462989 | MS.gene98543:CDS |
| ACAGATTGAAAAGTTACAGG+AGG | 0.653733 | 5.2:-72456247 | MS.gene98543:intron |
| TATTACAGCAAGTGGCTGAG+AGG | 0.658845 | 5.2:-72454613 | MS.gene98543:CDS |
| CCACTTGCTGTAATAGACGT+TGG | 0.660621 | 5.2:+72454621 | None:intergenic |
| AGATCATCCGGAGGACACGA+AGG | 0.660758 | 5.2:+72463027 | None:intergenic |
| GAATTCTAAATTGGAGCCTG+CGG | 0.668720 | 5.2:-72457565 | MS.gene98543:CDS |
| GCTTGTATCAGAAAGCGTGA+AGG | 0.670954 | 5.2:-72453888 | MS.gene98543:CDS |
| CTTACACGAAGATTTATCCA+CGG | 0.672505 | 5.2:-72462830 | MS.gene98543:CDS |
| GGAGGAATTCATTCCCATAG+CGG | 0.674967 | 5.2:+72458250 | None:intergenic |
| CTTTGCCAAAGAGTATACTC+GGG | 0.675113 | 5.2:+72457820 | None:intergenic |
| CAAACTCTAAGGCGGCTGCG+AGG | 0.683577 | 5.2:+72453598 | None:intergenic |
| CCGCCTTAGAGTTTGCCAGG+TGG | 0.688256 | 5.2:-72453590 | MS.gene98543:CDS |
| CCACCTGGCAAACTCTAAGG+CGG | 0.716860 | 5.2:+72453590 | None:intergenic |
| CATAGAAGTAGATCATCCGG+AGG | 0.734057 | 5.2:+72463018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 72452246 | 72464650 | 72452246 | ID=MS.gene98543 |
| chr5.2 | mRNA | 72452246 | 72464650 | 72452246 | ID=MS.gene98543.t1;Parent=MS.gene98543 |
| chr5.2 | exon | 72464540 | 72464650 | 72464540 | ID=MS.gene98543.t1.exon1;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72464540 | 72464650 | 72464540 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72463418 | 72463579 | 72463418 | ID=MS.gene98543.t1.exon2;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72463418 | 72463579 | 72463418 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72463162 | 72463249 | 72463162 | ID=MS.gene98543.t1.exon3;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72463162 | 72463249 | 72463162 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72462827 | 72463057 | 72462827 | ID=MS.gene98543.t1.exon4;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72462827 | 72463057 | 72462827 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72462526 | 72462693 | 72462526 | ID=MS.gene98543.t1.exon5;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72462526 | 72462693 | 72462526 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72458154 | 72458347 | 72458154 | ID=MS.gene98543.t1.exon6;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72458154 | 72458347 | 72458154 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72457989 | 72458072 | 72457989 | ID=MS.gene98543.t1.exon7;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72457989 | 72458072 | 72457989 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72457757 | 72457876 | 72457757 | ID=MS.gene98543.t1.exon8;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72457757 | 72457876 | 72457757 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72457439 | 72457625 | 72457439 | ID=MS.gene98543.t1.exon9;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72457439 | 72457625 | 72457439 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72457199 | 72457359 | 72457199 | ID=MS.gene98543.t1.exon10;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72457199 | 72457359 | 72457199 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72456515 | 72456586 | 72456515 | ID=MS.gene98543.t1.exon11;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72456515 | 72456586 | 72456515 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72456189 | 72456265 | 72456189 | ID=MS.gene98543.t1.exon12;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72456189 | 72456265 | 72456189 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72455191 | 72455382 | 72455191 | ID=MS.gene98543.t1.exon13;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72455191 | 72455382 | 72455191 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72454781 | 72454853 | 72454781 | ID=MS.gene98543.t1.exon14;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72454781 | 72454853 | 72454781 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72454595 | 72454681 | 72454595 | ID=MS.gene98543.t1.exon15;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72454595 | 72454681 | 72454595 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72453772 | 72453909 | 72453772 | ID=MS.gene98543.t1.exon16;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72453772 | 72453909 | 72453772 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72453468 | 72453670 | 72453468 | ID=MS.gene98543.t1.exon17;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72453468 | 72453670 | 72453468 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72452697 | 72452859 | 72452697 | ID=MS.gene98543.t1.exon18;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72452697 | 72452859 | 72452697 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| chr5.2 | exon | 72452246 | 72452377 | 72452246 | ID=MS.gene98543.t1.exon19;Parent=MS.gene98543.t1 |
| chr5.2 | CDS | 72452246 | 72452377 | 72452246 | ID=cds.MS.gene98543.t1;Parent=MS.gene98543.t1 |
| Gene Sequence |
| Protein sequence |
