AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005365.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005365.01.T01 MTR_3g011120 49.544 329 121 6 31 316 10 336 1.60e-93 282
MsG0180005365.01.T01 MTR_1g098180 48.824 340 94 7 28 316 12 322 4.82e-89 271
MsG0180005365.01.T01 MTR_8g467670 47.692 325 124 5 34 315 13 334 2.84e-82 254
MsG0180005365.01.T01 MTR_5g043605 49.664 298 114 10 32 316 22 296 3.31e-77 240
MsG0180005365.01.T01 MTR_2g034700 43.976 332 129 10 31 316 10 330 1.67e-73 231
MsG0180005365.01.T01 MTR_5g024260 44.413 349 124 10 31 315 18 360 4.59e-71 226
MsG0180005365.01.T01 MTR_8g063440 40.816 343 149 8 22 315 1 338 5.53e-68 217
MsG0180005365.01.T01 MTR_4g055820 39.368 348 145 9 33 315 12 358 1.14e-67 216
MsG0180005365.01.T01 MTR_0129s0070 40.571 350 150 12 23 316 5 352 1.48e-65 211
MsG0180005365.01.T01 MTR_2g066170 39.640 333 152 8 33 316 10 342 4.72e-65 210
MsG0180005365.01.T01 MTR_0129s0120 39.714 350 153 12 23 316 5 352 1.13e-63 206
MsG0180005365.01.T01 MTR_2g022000 37.950 361 144 11 33 315 14 372 1.09e-62 205
MsG0180005365.01.T01 MTR_0831s0010 38.873 355 149 9 18 315 33 376 4.77e-62 203
MsG0180005365.01.T01 MTR_2g066200 38.872 337 151 10 33 316 10 344 7.90e-62 201
MsG0180005365.01.T01 MTR_8g039500 39.759 332 148 11 33 318 10 335 1.16e-61 200
MsG0180005365.01.T01 MTR_7g069550 36.490 359 162 11 22 316 1 357 1.45e-61 201
MsG0180005365.01.T01 MTR_5g068490 48.163 245 106 9 73 313 5 232 3.05e-60 194
MsG0180005365.01.T01 MTR_4g028750 39.535 344 147 13 31 315 12 353 3.23e-60 197
MsG0180005365.01.T01 MTR_5g022850 41.830 306 147 11 33 316 14 310 9.12e-60 195
MsG0180005365.01.T01 MTR_4g130330 37.644 348 153 13 29 315 1 345 2.63e-59 195
MsG0180005365.01.T01 MTR_4g028660 39.368 348 143 15 31 315 12 354 2.65e-59 195
MsG0180005365.01.T01 MTR_4g027450 39.368 348 143 15 31 315 12 354 2.65e-59 195
MsG0180005365.01.T01 MTR_0129s0050 37.127 369 153 10 22 316 1 364 7.34e-59 194
MsG0180005365.01.T01 MTR_4g028510 39.655 348 145 13 31 315 12 357 1.20e-58 195
MsG0180005365.01.T01 MTR_8g063350 40.850 306 147 12 30 316 9 299 2.73e-58 191
MsG0180005365.01.T01 MTR_6g079810 40.341 352 138 15 34 315 69 418 3.47e-58 194
MsG0180005365.01.T01 MTR_5g097330 39.481 347 145 11 33 316 14 358 3.58e-58 192
MsG0180005365.01.T01 MTR_1g007450 38.746 351 154 11 25 315 2 351 4.56e-58 192
MsG0180005365.01.T01 MTR_0054s0090 36.490 359 162 11 23 316 5 362 4.61e-58 192
MsG0180005365.01.T01 MTR_8g064890 38.462 351 151 10 23 317 4 345 4.84e-58 192
MsG0180005365.01.T01 MTR_8g012090 39.017 346 133 10 22 316 3 321 5.36e-58 190
MsG0180005365.01.T01 MTR_8g464770 36.970 330 161 6 32 316 9 336 5.85e-58 191
MsG0180005365.01.T01 MTR_0054s0100 35.734 361 164 11 23 316 5 364 1.02e-56 189
MsG0180005365.01.T01 MTR_2g038680 38.082 365 149 13 25 316 6 366 1.13e-56 189
MsG0180005365.01.T01 MTR_6g080680 38.109 349 137 13 32 315 16 350 1.02e-55 186
MsG0180005365.01.T01 MTR_4g028680 39.017 346 148 16 31 315 12 355 1.67e-55 185
MsG0180005365.01.T01 MTR_2g066150 38.199 322 143 9 34 316 11 315 2.06e-55 184
MsG0180005365.01.T01 MTR_6g086825 37.607 351 152 11 31 315 66 415 2.86e-55 186
MsG0180005365.01.T01 MTR_2g065860 40.233 343 136 14 34 316 11 344 4.78e-55 184
MsG0180005365.01.T01 MTR_4g102410 37.391 345 151 10 33 313 59 402 1.68e-54 184
MsG0180005365.01.T01 MTR_4g007940 41.786 280 132 9 62 315 23 297 2.62e-54 181
MsG0180005365.01.T01 MTR_8g064790 37.195 328 113 7 33 315 13 292 6.25e-54 179
MsG0180005365.01.T01 MTR_0134s0060 36.842 361 149 13 33 316 10 368 6.26e-54 182
MsG0180005365.01.T01 MTR_2g021800 35.813 363 152 11 32 315 13 373 6.37e-54 182
MsG0180005365.01.T01 MTR_5g074800 40.959 271 132 9 70 316 36 302 1.12e-53 179
MsG0180005365.01.T01 MTR_2g021950 37.901 343 151 11 33 315 14 354 1.32e-53 180
MsG0180005365.01.T01 MTR_1g050312 42.857 273 118 12 56 316 5 251 1.51e-53 177
MsG0180005365.01.T01 MTR_6g461660 37.971 345 151 12 33 317 17 358 3.49e-53 179
MsG0180005365.01.T01 MTR_7g079640 35.135 333 153 7 34 316 12 331 4.94e-53 178
MsG0180005365.01.T01 MTR_7g111700 40.173 346 132 14 22 316 1 322 4.64e-52 176
MsG0180005365.01.T01 MTR_5g096910 36.842 342 154 11 31 316 13 348 8.11e-52 176
MsG0180005365.01.T01 MTR_2g104340 35.674 356 165 11 22 316 1 353 1.14e-51 175
MsG0180005365.01.T01 MTR_7g017040 38.439 346 144 11 33 315 14 353 1.15e-51 175
MsG0180005365.01.T01 MTR_4g117550 35.905 337 143 9 32 316 14 329 2.49e-51 174
MsG0180005365.01.T01 MTR_6g079770 37.500 360 148 13 33 316 15 373 2.95e-51 175
MsG0180005365.01.T01 MTR_5g097350 44.238 269 129 12 57 316 88 344 3.41e-51 174
MsG0180005365.01.T01 MTR_1g007410 38.872 337 138 13 34 307 21 352 4.30e-51 174
MsG0180005365.01.T01 MTR_5g097220 35.933 359 158 11 28 316 6 362 6.07e-51 174
MsG0180005365.01.T01 MTR_8g036970 37.037 324 110 10 39 315 2 278 7.11e-51 172
MsG0180005365.01.T01 MTR_8g046310 38.824 340 139 14 30 316 11 334 1.83e-50 172
MsG0180005365.01.T01 MTR_8g063370 36.578 339 151 11 30 316 19 345 1.86e-50 172
MsG0180005365.01.T01 MTR_5g037680 35.447 347 151 10 31 316 4 338 2.90e-50 173
MsG0180005365.01.T01 MTR_5g092850 36.695 357 151 14 24 313 5 353 5.52e-50 171
MsG0180005365.01.T01 MTR_8g046200 36.436 376 142 14 30 316 11 378 1.03e-49 171
MsG0180005365.01.T01 MTR_8g063330 35.227 352 156 11 27 315 6 348 1.47e-49 172
MsG0180005365.01.T01 MTR_5g072060 34.770 348 141 10 33 316 4 329 2.10e-49 174
MsG0180005365.01.T01 MTR_8g013000 36.782 348 152 14 33 316 8 351 2.73e-49 169
MsG0180005365.01.T01 MTR_7g017130 34.615 338 161 10 33 313 16 350 5.19e-49 168
MsG0180005365.01.T01 MTR_8g033140 34.828 379 152 13 20 314 4 371 6.42e-49 169
MsG0180005365.01.T01 MTR_7g017170 34.615 338 161 10 33 313 16 350 6.82e-49 168
MsG0180005365.01.T01 MTR_7g016930 37.920 327 151 11 32 316 13 329 7.30e-49 166
MsG0180005365.01.T01 MTR_2g021770 33.333 348 162 9 38 315 15 362 1.10e-48 168
MsG0180005365.01.T01 MTR_2g065840 38.872 337 148 12 34 316 11 343 1.75e-48 167
MsG0180005365.01.T01 MTR_2g104280 35.278 360 160 15 27 316 6 362 1.78e-48 167
MsG0180005365.01.T01 MTR_8g041270 36.338 355 151 16 33 316 13 363 4.45e-48 166
MsG0180005365.01.T01 MTR_6g078010 39.483 271 126 9 67 315 36 290 3.60e-47 162
MsG0180005365.01.T01 MTR_4g014370 34.530 362 150 12 33 314 9 363 1.19e-46 162
MsG0180005365.01.T01 MTR_6g090180 35.613 351 158 15 32 315 44 393 7.04e-46 161
MsG0180005365.01.T01 MTR_5g059430 33.425 365 159 13 31 316 22 381 2.19e-45 159
MsG0180005365.01.T01 MTR_5g074850 34.819 359 164 13 22 313 22 377 2.66e-45 165
MsG0180005365.01.T01 MTR_6g090250 37.417 302 136 11 67 317 82 381 2.74e-45 159
MsG0180005365.01.T01 MTR_5g069390 35.112 356 155 15 31 315 22 372 3.39e-45 160
MsG0180005365.01.T01 MTR_5g097680 33.957 374 156 12 32 316 14 385 7.82e-45 158
MsG0180005365.01.T01 MTR_2g064950 34.097 349 155 12 33 316 8 346 8.93e-45 157
MsG0180005365.01.T01 MTR_1g007430 41.288 264 131 7 68 316 68 322 1.94e-44 154
MsG0180005365.01.T01 MTR_5g086590 43.662 213 104 6 112 316 11 215 3.09e-44 151
MsG0180005365.01.T01 MTR_5g091140 33.244 373 158 11 5 313 23 368 1.33e-43 154
MsG0180005365.01.T01 MTR_6g478230 33.611 360 146 13 30 315 22 362 1.11e-42 152
MsG0180005365.01.T01 MTR_5g096630 34.161 322 174 11 21 313 54 366 1.20e-42 152
MsG0180005365.01.T01 MTR_5g064700 39.189 296 129 15 68 316 36 327 1.22e-42 151
MsG0180005365.01.T01 MTR_5g096900 37.695 321 127 12 27 284 4 314 2.05e-42 149
MsG0180005365.01.T01 MTR_5g075370 33.616 354 162 12 30 313 3 353 5.91e-42 155
MsG0180005365.01.T01 MTR_8g046220 34.140 372 143 13 28 316 10 362 1.18e-41 149
MsG0180005365.01.T01 MTR_6g004450 46.237 186 82 6 143 316 46 225 2.24e-41 145
MsG0180005365.01.T01 MTR_5g092860 37.063 286 128 11 63 316 64 329 6.84e-41 146
MsG0180005365.01.T01 MTR_8g033110 34.400 375 159 13 22 315 1 369 2.78e-40 145
MsG0180005365.01.T01 MTR_8g063310 33.811 349 153 15 33 318 20 353 5.08e-40 145
MsG0180005365.01.T01 MTR_6g087620 36.567 268 124 9 68 315 2 243 5.11e-40 142
MsG0180005365.01.T01 MTR_1g053510 34.903 361 141 15 34 314 14 360 1.09e-39 144
MsG0180005365.01.T01 MTR_5g076490 38.603 272 117 10 67 307 31 283 1.22e-39 142
MsG0180005365.01.T01 MTR_8g018110 32.958 355 156 11 31 315 10 352 1.73e-39 143
MsG0180005365.01.T01 MTR_1g050308 32.229 332 116 10 34 315 33 305 2.41e-39 142
MsG0180005365.01.T01 MTR_8g032980 32.267 375 156 12 29 314 10 375 1.91e-38 141
MsG0180005365.01.T01 MTR_8g033090 31.551 374 169 11 22 315 1 367 4.55e-38 140
MsG0180005365.01.T01 MTR_2g021920 43.299 194 86 6 146 315 37 230 1.88e-37 135
MsG0180005365.01.T01 MTR_7g023800 35.714 280 123 10 58 316 24 267 2.24e-36 133
MsG0180005365.01.T01 MTR_6g079790 35.955 267 133 11 79 313 2 262 5.25e-36 132
MsG0180005365.01.T01 MTR_4g016000 43.069 202 98 7 119 313 2 193 3.93e-35 127
MsG0180005365.01.T01 MTR_5g098950 39.024 205 99 4 116 316 90 272 6.06e-35 128
MsG0180005365.01.T01 MTR_7g104710 33.993 303 111 11 32 275 14 286 7.28e-34 126
MsG0180005365.01.T01 MTR_6g009350 42.623 183 91 6 146 316 8 188 1.11e-33 122
MsG0180005365.01.T01 MTR_5g023970 47.857 140 67 4 183 316 12 151 3.65e-30 113
MsG0180005365.01.T01 MTR_5g097850 36.214 243 86 9 92 315 9 201 2.78e-29 112
MsG0180005365.01.T01 MTR_3g018750 40.102 197 84 8 145 313 2 192 3.27e-28 109
MsG0180005365.01.T01 MTR_7g019250 38.806 201 93 7 128 314 206 390 1.02e-27 112
MsG0180005365.01.T01 MTR_6g090260 45.775 142 68 5 183 315 76 217 1.46e-27 108
MsG0180005365.01.T01 MTR_8g033000 31.271 291 150 7 70 314 31 317 4.63e-27 109
MsG0180005365.01.T01 MTR_4g014370 31.373 306 152 12 33 314 20 291 7.40e-27 108
MsG0180005365.01.T01 MTR_2g104260 34.536 194 102 9 68 238 84 275 3.01e-26 105
MsG0180005365.01.T01 MTR_5g094350 31.343 268 123 10 32 244 10 271 8.65e-24 98.6
MsG0180005365.01.T01 MTR_8g035690 35.749 207 94 7 127 299 40 241 1.19e-23 99.0
MsG0180005365.01.T01 MTR_7g101200 35.648 216 104 9 110 314 34 225 4.58e-23 95.9
MsG0180005365.01.T01 MTR_7g017150 42.759 145 67 5 176 309 76 215 3.18e-22 94.4
MsG0180005365.01.T01 MTR_7g017120 42.759 145 71 5 174 309 73 214 3.43e-22 94.4
MsG0180005365.01.T01 MTR_5g097540 42.754 138 75 2 181 316 96 231 3.62e-22 94.7
MsG0180005365.01.T01 MTR_5g091150 31.624 234 93 11 79 281 2 199 4.52e-22 92.4
MsG0180005365.01.T01 MTR_3g047540 55.556 81 36 0 179 259 3 83 6.65e-22 88.6
MsG0180005365.01.T01 MTR_3g030620 44.531 128 59 3 201 316 11 138 1.00e-21 90.9
MsG0180005365.01.T01 MTR_5g097820 31.641 256 120 8 29 232 17 269 2.04e-21 92.0
MsG0180005365.01.T01 MTR_8g073570 31.176 170 77 4 27 157 2 170 6.34e-21 88.2
MsG0180005365.01.T01 MTR_4g133170 26.748 329 175 15 35 315 4 314 4.19e-20 90.1
MsG0180005365.01.T01 MTR_1g068835 27.576 330 178 16 35 317 4 319 5.53e-20 89.7
MsG0180005365.01.T01 MTR_6g465360 34.975 203 74 7 19 164 42 243 1.32e-19 87.4
MsG0180005365.01.T01 MTR_5g096920 43.119 109 57 3 212 316 1 108 1.57e-19 84.0
MsG0180005365.01.T01 MTR_2g024110 27.961 304 158 15 35 293 4 291 2.40e-19 87.8
MsG0180005365.01.T01 MTR_5g066420 41.379 116 57 2 212 316 1 116 2.53e-19 83.6
MsG0180005365.01.T01 MTR_6g070880 28.879 232 103 8 34 204 31 261 7.35e-19 84.7
MsG0180005365.01.T01 MTR_6g071420 28.879 232 103 8 34 204 31 261 7.35e-19 84.7
MsG0180005365.01.T01 MTR_1g115205 30.279 251 109 10 12 218 7 235 1.20e-18 84.0
MsG0180005365.01.T01 MTR_5g096050 47.222 108 40 4 212 302 1 108 7.92e-18 78.6
MsG0180005365.01.T01 MTR_6g079730 50.000 92 42 3 228 315 14 105 8.34e-18 79.3
MsG0180005365.01.T01 MTR_2g026010 28.077 260 148 12 81 311 69 318 1.12e-17 83.2
MsG0180005365.01.T01 MTR_2g031720 27.723 303 168 13 35 295 6 299 1.79e-17 82.8
MsG0180005365.01.T01 MTR_2g021150 29.085 306 159 13 34 295 13 304 2.37e-17 82.0
MsG0180005365.01.T01 MTR_1g068860 27.848 316 174 16 35 309 4 306 3.50e-17 81.6
MsG0180005365.01.T01 MTR_2g021190 32.836 201 125 7 97 295 116 308 7.61e-17 80.9
MsG0180005365.01.T01 MTR_1g047080 31.852 270 138 14 67 307 29 281 1.13e-16 79.3
MsG0180005365.01.T01 MTR_2g028110 26.791 321 189 15 35 315 4 318 3.65e-16 79.0
MsG0180005365.01.T01 MTR_4g094400 42.727 110 43 3 205 294 3 112 5.01e-16 73.9
MsG0180005365.01.T01 MTR_2g029990 31.050 219 134 8 82 295 132 338 1.02e-15 77.4
MsG0180005365.01.T01 MTR_1g050305 65.574 61 16 2 261 316 21 81 1.49e-15 72.8
MsG0180005365.01.T01 MTR_2g025960 26.733 202 122 9 110 295 24 215 1.52e-15 76.3
MsG0180005365.01.T01 MTR_3g006670 29.699 266 166 8 54 314 106 355 1.54e-15 77.0
MsG0180005365.01.T01 MTR_5g037190 28.682 258 105 8 33 233 14 249 1.57e-15 75.5
MsG0180005365.01.T01 MTR_1g068875 27.425 299 169 11 35 296 4 291 2.90e-15 76.3
MsG0180005365.01.T01 MTR_5g097660 57.812 64 26 1 253 315 12 75 9.48e-15 70.1
MsG0180005365.01.T01 MTR_0667s0010 26.899 316 169 16 31 295 2 306 1.80e-14 73.9
MsG0180005365.01.T01 MTR_3g047580 40.000 120 46 5 32 128 11 127 2.25e-14 69.3
MsG0180005365.01.T01 MTR_2g025420 24.699 332 172 14 31 295 2 322 2.82e-14 73.6
MsG0180005365.01.T01 MTR_2g028130 26.168 321 169 17 35 296 5 316 2.98e-14 73.2
MsG0180005365.01.T01 MTR_5g086780 58.621 58 24 0 256 313 148 205 3.14e-14 71.2
MsG0180005365.01.T01 MTR_3g019290 31.902 163 77 5 29 171 8 156 8.10e-14 68.9
MsG0180005365.01.T01 MTR_3g024110 31.771 192 108 7 106 295 207 377 8.48e-14 72.0
MsG0180005365.01.T01 MTR_1g055375 29.703 202 124 9 100 295 107 296 2.95e-13 70.1
MsG0180005365.01.T01 MTR_5g036250 59.322 59 24 0 258 316 10 68 3.76e-13 67.4
MsG0180005365.01.T01 MTR_2g021155 29.167 192 125 6 117 304 711 895 4.21e-13 70.5
MsG0180005365.01.T01 MTR_2g021050 26.821 302 159 13 35 295 5 285 6.37e-13 69.3
MsG0180005365.01.T01 MTR_2g021860 31.034 116 73 3 77 185 13 128 1.10e-12 65.1
MsG0180005365.01.T01 MTR_6g048120 29.289 239 134 11 86 308 129 348 1.52e-12 68.2
MsG0180005365.01.T01 MTR_2g426060 24.383 324 173 14 31 295 2 312 2.04e-12 67.8
MsG0180005365.01.T01 MTR_3g036335 29.911 224 133 10 79 296 122 327 2.53e-12 67.4
MsG0180005365.01.T01 MTR_0044s0300 31.551 187 104 7 114 295 152 319 5.33e-12 66.2
MsG0180005365.01.T01 MTR_4g070550 25.970 335 178 18 35 309 5 329 6.61e-12 66.2
MsG0180005365.01.T01 MTR_2g022020 46.970 66 35 0 249 314 11 76 7.54e-12 62.0
MsG0180005365.01.T01 MTR_6g053260 26.398 322 177 15 19 295 318 624 1.04e-11 66.2
MsG0180005365.01.T01 MTR_8g099460 26.282 312 164 15 35 295 5 301 1.26e-11 65.5
MsG0180005365.01.T01 MTR_5g096070 32.215 149 63 6 32 154 23 159 1.26e-11 62.4
MsG0180005365.01.T01 MTR_2g426070 24.207 347 186 17 36 317 7 341 1.30e-11 65.5
MsG0180005365.01.T01 MTR_2g435950 28.241 216 135 9 92 306 47 243 1.83e-11 64.3
MsG0180005365.01.T01 MTR_6g048140 27.650 217 126 7 86 295 135 327 1.96e-11 64.7
MsG0180005365.01.T01 MTR_7g407070 30.876 217 133 10 91 295 126 337 1.99e-11 64.7
MsG0180005365.01.T01 MTR_2g426020 24.451 319 174 14 31 295 2 307 2.59e-11 64.3
MsG0180005365.01.T01 MTR_3g058440 33.577 137 79 6 108 242 150 276 2.98e-11 63.5
MsG0180005365.01.T01 MTR_2g028160 25.664 339 175 19 35 309 5 330 4.06e-11 63.9
MsG0180005365.01.T01 MTR_3g036290 28.571 252 135 13 75 314 94 312 5.52e-11 63.2
MsG0180005365.01.T01 MTR_3g011100 29.565 230 140 11 75 296 311 526 5.87e-11 63.5
MsG0180005365.01.T01 MTR_3g013740 28.571 217 121 11 95 295 144 342 5.97e-11 63.2
MsG0180005365.01.T01 MTR_1g054725 28.155 206 130 9 98 295 115 310 8.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005365.01.T01 AT3G06240 28.780 205 127 9 95 292 163 355 1.41e-12 68.2

Find 74 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGAGATATTACTCTTAA+TGG 0.191741 1:-90867773 MsG0180005365.01.T01:CDS
GTTAACCTGCAAGTGTTAAA+TGG 0.226071 1:-90867431 MsG0180005365.01.T01:CDS
TCTTTCCACATATCAATTCT+AGG 0.229108 1:-90867371 MsG0180005365.01.T01:CDS
CTTTGTTATTTCCAACTATA+AGG 0.238656 1:-90869714 MsG0180005365.01.T01:CDS
TGTGAAGCATGAGTCTTTCT+TGG 0.244512 1:-90867666 MsG0180005365.01.T01:CDS
ACCATCAAGCACGCCTTCTA+AGG 0.253718 1:+90867460 None:intergenic
AACAGATGATTATGTCAATT+TGG 0.258483 1:-90867528 MsG0180005365.01.T01:CDS
CAATTTGGTATCATATGATT+TGG 0.267237 1:-90867513 MsG0180005365.01.T01:CDS
ACTTCCATTCAACTTCCTAT+TGG 0.293549 1:-90867296 MsG0180005365.01.T01:CDS
CCAATATGCGGATTGTTAAA+TGG 0.301676 1:+90867935 None:intergenic
CCCTTAGAAGGCGTGCTTGA+TGG 0.312805 1:-90867461 MsG0180005365.01.T01:CDS
ATAACACCTTTACCCTTAGA+AGG 0.324969 1:-90867473 MsG0180005365.01.T01:CDS
GAGACCCATTTAACACTTGC+AGG 0.335590 1:+90867426 None:intergenic
AGCTAATTCAATATATTCTA+AGG 0.347585 1:+90867249 None:intergenic
ATACAACACTATTAGCATTC+TGG 0.358514 1:+90867582 None:intergenic
ACCTTAACTTCATCAATTGA+TGG 0.361386 1:+90867833 None:intergenic
AAACGCTTAATAGATTTAAC+AGG 0.362662 1:+90868162 None:intergenic
CCATTTAACAATCCGCATAT+TGG 0.371026 1:-90867935 MsG0180005365.01.T01:CDS
GATATTACTCTTAATGGATT+CGG 0.378999 1:-90867767 MsG0180005365.01.T01:CDS
CCCATCAATTGATGAAGTTA+AGG 0.381552 1:-90867834 MsG0180005365.01.T01:CDS
GATTCGGCTATGACCATGTT+AGG 0.385440 1:-90867751 MsG0180005365.01.T01:CDS
ATAGTCTGAAATGTGATTCC+TGG 0.390423 1:-90867637 MsG0180005365.01.T01:CDS
ATCCTTTCTGATAAGCCAAC+TGG 0.404666 1:-90867608 MsG0180005365.01.T01:CDS
GTATCTGAATTCTCATGGTT+GGG 0.425422 1:-90868017 MsG0180005365.01.T01:CDS
CCCTTCTTCCAAGCTCCAAT+AGG 0.425836 1:+90867281 None:intergenic
TTAACCTGCAAGTGTTAAAT+GGG 0.426541 1:-90867430 MsG0180005365.01.T01:CDS
ACTTGAATGGGGTGTGTCAT+TGG 0.433295 1:-90867559 MsG0180005365.01.T01:CDS
AATAGTGTTGTATACTTGAA+TGG 0.437745 1:-90867572 MsG0180005365.01.T01:CDS
AGGTTGTCAGCTGGATTAAT+CGG 0.446440 1:-90869694 MsG0180005365.01.T01:CDS
ATAGTGTTGTATACTTGAAT+GGG 0.449852 1:-90867571 MsG0180005365.01.T01:CDS
TCCTATTGGAGCTTGGAAGA+AGG 0.469811 1:-90867282 MsG0180005365.01.T01:CDS
GTAATATCTCTCATAACCTT+AGG 0.470251 1:+90867782 None:intergenic
CCAGCTGACAACCTTATAGT+TGG 0.470277 1:+90869703 None:intergenic
TTCAACTTCCTATTGGAGCT+TGG 0.472692 1:-90867289 MsG0180005365.01.T01:CDS
GGAAGCTCAGCAAAACTAGA+AGG 0.483446 1:+90867806 None:intergenic
ATATCAATTCTAGGTGAACT+TGG 0.485996 1:-90867362 MsG0180005365.01.T01:CDS
CCTATTGGAGCTTGGAAGAA+GGG 0.488740 1:-90867281 MsG0180005365.01.T01:CDS
TCTAGGTGAACTTGGAGTAA+AGG 0.494247 1:-90867354 MsG0180005365.01.T01:CDS
AGTATCTGAATTCTCATGGT+TGG 0.494762 1:-90868018 MsG0180005365.01.T01:CDS
AACCAGTTGGCTTATCAGAA+AGG 0.495845 1:+90867606 None:intergenic
TGAGAAGGAGGAGGTTATGA+AGG 0.507370 1:+90868245 None:intergenic
CCTTAACTTCATCAATTGAT+GGG 0.508703 1:+90867834 None:intergenic
TGGCTTAAACTCTTCAATGT+TGG 0.509342 1:-90867326 MsG0180005365.01.T01:CDS
TCTCAAACTTGTTACCAGAA+AGG 0.514342 1:+90867984 None:intergenic
TTACATTTAATAATCATCCA+TGG 0.514457 1:-90867694 MsG0180005365.01.T01:CDS
AGCTCCAATAGGAAGTTGAA+TGG 0.522935 1:+90867292 None:intergenic
CTTTATAGTCATTCCTAACA+TGG 0.524122 1:+90867738 None:intergenic
CCAACTATAAGGTTGTCAGC+TGG 0.526660 1:-90869703 MsG0180005365.01.T01:CDS
TACATTTAATAATCATCCAT+GGG 0.541001 1:-90867693 MsG0180005365.01.T01:CDS
TCCTTCTCATCTGTTAGTAG+TGG 0.546506 1:-90868231 MsG0180005365.01.T01:CDS
AGCACGCCTTCTAAGGGTAA+AGG 0.547795 1:+90867467 None:intergenic
TGCGGATTGTTAAATGGAGG+TGG 0.553012 1:+90867941 None:intergenic
CCATCAAGCACGCCTTCTAA+GGG 0.555479 1:+90867461 None:intergenic
TGTCAGCTGGATTAATCGGC+CGG 0.555655 1:-90869690 MsG0180005365.01.T01:intron
ATATCTCTCATAACCTTAGG+TGG 0.558007 1:+90867785 None:intergenic
AAGCAGTATCTGAATTCTCA+TGG 0.563771 1:-90868022 MsG0180005365.01.T01:CDS
TTAGCATTCTGGAAACCAGT+TGG 0.568925 1:+90867593 None:intergenic
ATAAGAGAAATGCTATATTG+TGG 0.571490 1:-90867859 MsG0180005365.01.T01:CDS
ACCACTACTAACAGATGAGA+AGG 0.573748 1:+90868230 None:intergenic
TGACTATAAAGTCATTCGAC+AGG 0.574420 1:-90867726 MsG0180005365.01.T01:CDS
GTTCACCTAGAATTGATATG+TGG 0.584408 1:+90867366 None:intergenic
GGAAGTTGAATGGAAGTCAA+AGG 0.593916 1:+90867302 None:intergenic
CTTATAGTTGGAAATAACAA+AGG 0.607537 1:+90869715 None:intergenic
TCATGCTTCACAATATCCCA+TGG 0.620230 1:+90867677 None:intergenic
TATAAAGTCATTCGACAGGT+GGG 0.626737 1:-90867722 MsG0180005365.01.T01:CDS
AACTTGGAGTAAAGGAATCG+TGG 0.636326 1:-90867346 MsG0180005365.01.T01:CDS
CTATAAAGTCATTCGACAGG+TGG 0.637146 1:-90867723 MsG0180005365.01.T01:CDS
ATCATATGATTTGGACAATG+AGG 0.645798 1:-90867504 MsG0180005365.01.T01:CDS
GTCTGAAATGTGATTCCTGG+AGG 0.649835 1:-90867634 MsG0180005365.01.T01:CDS
ACTAACAGATGAGAAGGAGG+AGG 0.661629 1:+90868236 None:intergenic
ACTACTAACAGATGAGAAGG+AGG 0.661705 1:+90868233 None:intergenic
ATATGAATATGACCAATATG+CGG 0.682728 1:+90867923 None:intergenic
ATATGCGGATTGTTAAATGG+AGG 0.709284 1:+90867938 None:intergenic
TAGTGTTGTATACTTGAATG+GGG 0.731524 1:-90867570 MsG0180005365.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTAATGTATGATATAA+TGG - Chr1:90867447-90867466 MsG0180005365.01.T01:CDS 15.0%
!! AAACTAATGTATGATATAAT+GGG - Chr1:90867448-90867467 MsG0180005365.01.T01:CDS 15.0%
!! TAAAATAAACAAAATCAAGA+GGG - Chr1:90868457-90868476 MsG0180005365.01.T01:intron 15.0%
!!! ATTATATCATACATTAGTTT+TGG + Chr1:90867448-90867467 None:intergenic 15.0%
!!! ATTTTCCTAAAATATAACAA+TGG + Chr1:90867526-90867545 None:intergenic 15.0%
!!! TCAAAATTTTGTTCTTTTAA+TGG - Chr1:90867750-90867769 MsG0180005365.01.T01:CDS 15.0%
!!! TTATATCATACATTAGTTTT+GGG + Chr1:90867447-90867466 None:intergenic 15.0%
!! AACTAATGTATGATATAATG+GGG - Chr1:90867449-90867468 MsG0180005365.01.T01:CDS 20.0%
!! ATAAATTGTAAATAGCATCT+AGG + Chr1:90868313-90868332 None:intergenic 20.0%
!! GTAAAATAAACAAAATCAAG+AGG - Chr1:90868456-90868475 MsG0180005365.01.T01:intron 20.0%
!! TACATTTAATAATCATCCAT+GGG - Chr1:90869284-90869303 MsG0180005365.01.T01:intron 20.0%
!! TTAAATAATTCCTAAACTGA+TGG - Chr1:90867322-90867341 MsG0180005365.01.T01:CDS 20.0%
!! TTACATTTAATAATCATCCA+TGG - Chr1:90869283-90869302 MsG0180005365.01.T01:intron 20.0%
!! TTGTACTAAAACAATATCTA+CGG - Chr1:90867552-90867571 MsG0180005365.01.T01:CDS 20.0%
!! TTGTTATATTCATAAAGAAC+CGG - Chr1:90868273-90868292 MsG0180005365.01.T01:intron 20.0%
!!! AAGGTAATGAGAAAATATTT+TGG - Chr1:90868045-90868064 MsG0180005365.01.T01:intron 20.0%
!!! AGGTAATGAGAAAATATTTT+GGG - Chr1:90868046-90868065 MsG0180005365.01.T01:intron 20.0%
!!! ATTGGTCATATTCATATTTT+AGG - Chr1:90869060-90869079 MsG0180005365.01.T01:intron 20.0%
!!! CTTAACCATTGTTATATTTT+AGG - Chr1:90867518-90867537 MsG0180005365.01.T01:CDS 20.0%
!!! TCTTGTTTTTACAAAGTATT+CGG + Chr1:90867928-90867947 None:intergenic 20.0%
! AAACGCTTAATAGATTTAAC+AGG + Chr1:90868818-90868837 None:intergenic 25.0%
! AACAGATGATTATGTCAATT+TGG - Chr1:90869449-90869468 MsG0180005365.01.T01:intron 25.0%
! AACCTGTCACAAAAAAAAAA+TGG + Chr1:90868360-90868379 None:intergenic 25.0%
! AATAGTGTTGTATACTTGAA+TGG - Chr1:90869405-90869424 MsG0180005365.01.T01:intron 25.0%
! ACTAATGTATGATATAATGG+GGG - Chr1:90867450-90867469 MsG0180005365.01.T01:CDS 25.0%
! ATAAGAGAAATGCTATATTG+TGG - Chr1:90869118-90869137 MsG0180005365.01.T01:intron 25.0%
! ATAGTGTTGTATACTTGAAT+GGG - Chr1:90869406-90869425 MsG0180005365.01.T01:intron 25.0%
! ATATGAATATGACCAATATG+CGG + Chr1:90869057-90869076 None:intergenic 25.0%
! ATGAGAGATATTACTCTTAA+TGG - Chr1:90869204-90869223 MsG0180005365.01.T01:intron 25.0%
! CAATTTGGTATCATATGATT+TGG - Chr1:90869464-90869483 MsG0180005365.01.T01:intron 25.0%
! CTTATAGTTGGAAATAACAA+AGG + Chr1:90867265-90867284 None:intergenic 25.0%
! GGAAAATTGAAAATTGAAAG+TGG - Chr1:90867400-90867419 MsG0180005365.01.T01:CDS 25.0%
! GTAATGTTGAATATGTAACT+AGG - Chr1:90867837-90867856 MsG0180005365.01.T01:CDS 25.0%
! TGTTATATTCATAAAGAACC+GGG - Chr1:90868274-90868293 MsG0180005365.01.T01:intron 25.0%
! TTAGGAATTATTTAAGAAGC+AGG + Chr1:90867317-90867336 None:intergenic 25.0%
!! AAGCATAATTTAGCTCAATT+TGG + Chr1:90868504-90868523 None:intergenic 25.0%
!! ACTTTAAGGAACCATTAATA+AGG - Chr1:90868575-90868594 MsG0180005365.01.T01:intron 25.0%
!! GTTGAGAAAAATTGACTTTA+AGG - Chr1:90868561-90868580 MsG0180005365.01.T01:intron 25.0%
!!! AAATTTTCATAAAAGCGTGT+TGG + Chr1:90868672-90868691 None:intergenic 25.0%
!!! CTTTGTTATTTCCAACTATA+AGG - Chr1:90867263-90867282 MsG0180005365.01.T01:CDS 25.0%
!!! GATATTACTCTTAATGGATT+CGG - Chr1:90869210-90869229 MsG0180005365.01.T01:intron 25.0%
!!! TTCCATTTTTTTTTTGTGAC+AGG - Chr1:90868355-90868374 MsG0180005365.01.T01:intron 25.0%
AAAACTCAAATGTCTAACAC+TGG - Chr1:90868244-90868263 MsG0180005365.01.T01:CDS 30.0%
AACAAAAATGTTTGTGCCTT+AGG - Chr1:90867792-90867811 MsG0180005365.01.T01:CDS 30.0%
AACACATGTTCTTGATTGTA+AGG + Chr1:90868612-90868631 None:intergenic 30.0%
AATGCAAAAAGCAATGTCAT+CGG + Chr1:90868783-90868802 None:intergenic 30.0%
ACCTTAACTTCATCAATTGA+TGG + Chr1:90869147-90869166 None:intergenic 30.0%
AGGAAATAATGTATGCTGTA+AGG - Chr1:90867379-90867398 MsG0180005365.01.T01:CDS 30.0%
ATACAACACTATTAGCATTC+TGG + Chr1:90869398-90869417 None:intergenic 30.0%
ATATCAATTCTAGGTGAACT+TGG - Chr1:90869615-90869634 MsG0180005365.01.T01:intron 30.0%
ATTTACTTGTGGTTAAACGA+TGG + Chr1:90867722-90867741 None:intergenic 30.0%
CCTTAACTTCATCAATTGAT+GGG + Chr1:90869146-90869165 None:intergenic 30.0%
CTTGTTAAAACCATCAGTTT+AGG + Chr1:90867335-90867354 None:intergenic 30.0%
CTTTATAGTCATTCCTAACA+TGG + Chr1:90869242-90869261 None:intergenic 30.0%
GTAATATCTCTCATAACCTT+AGG + Chr1:90869198-90869217 None:intergenic 30.0%
TAGTGTTGTATACTTGAATG+GGG - Chr1:90869407-90869426 MsG0180005365.01.T01:intron 30.0%
TATTCGGATGATTAGTACAA+CGG + Chr1:90867912-90867931 None:intergenic 30.0%
TCTTTCCACATATCAATTCT+AGG - Chr1:90869606-90869625 MsG0180005365.01.T01:intron 30.0%
TGACTTCTTTCATTTACTTG+TGG + Chr1:90867733-90867752 None:intergenic 30.0%
TTAACCTGCAAGTGTTAAAT+GGG - Chr1:90869547-90869566 MsG0180005365.01.T01:intron 30.0%
TTGGAAGCTTTCCTTATTAA+TGG + Chr1:90868589-90868608 None:intergenic 30.0%
TTTACTTGTGGTTAAACGAT+GGG + Chr1:90867721-90867740 None:intergenic 30.0%
TTTCTCTTTCATCTGAATGT+TGG - Chr1:90867995-90868014 MsG0180005365.01.T01:CDS 30.0%
TTTCTTCTGTTCGTAAATCA+TGG - Chr1:90868837-90868856 MsG0180005365.01.T01:intron 30.0%
! ATCATATGATTTGGACAATG+AGG - Chr1:90869473-90869492 MsG0180005365.01.T01:intron 30.0%
! TAAGGCACAAACATTTTTGT+TGG + Chr1:90867793-90867812 None:intergenic 30.0%
!! GGAACATTTTGAAGAAATCA+GGG + Chr1:90868880-90868899 None:intergenic 30.0%
!! GTTACCTTTAAAACAGATTG+TGG + Chr1:90868217-90868236 None:intergenic 30.0%
!! TGGGATTTTTATTTCCTTTC+TGG - Chr1:90868979-90868998 MsG0180005365.01.T01:intron 30.0%
!! TTTAATGCTTTGAAGTTCGT+AGG - Chr1:90867359-90867378 MsG0180005365.01.T01:CDS 30.0%
!!! TATCATACATTAGTTTTGGG+AGG + Chr1:90867444-90867463 None:intergenic 30.0%
AAGCAGTATCTGAATTCTCA+TGG - Chr1:90868955-90868974 MsG0180005365.01.T01:intron 35.0%
ACCTGCACAAAAAGATACAT+GGG + Chr1:90868167-90868186 None:intergenic 35.0%
ACTTCCATTCAACTTCCTAT+TGG - Chr1:90869681-90869700 MsG0180005365.01.T01:intron 35.0%
AGTATCTGAATTCTCATGGT+TGG - Chr1:90868959-90868978 MsG0180005365.01.T01:intron 35.0%
ATAACACCTTTACCCTTAGA+AGG - Chr1:90869504-90869523 MsG0180005365.01.T01:intron 35.0%
ATATCTCTCATAACCTTAGG+TGG + Chr1:90869195-90869214 None:intergenic 35.0%
ATCACAATCTCTCATTCCTA+AGG + Chr1:90867811-90867830 None:intergenic 35.0%
ATGCAAAAAGCAATGTCATC+GGG + Chr1:90868782-90868801 None:intergenic 35.0%
ATGTAAACTGCCAAGTCATT+CGG + Chr1:90867584-90867603 None:intergenic 35.0%
ATTCGGATGATTAGTACAAC+GGG + Chr1:90867911-90867930 None:intergenic 35.0%
CATGTTCTTGATTGTAAGGT+TGG + Chr1:90868608-90868627 None:intergenic 35.0%
CCATTTAACAATCCGCATAT+TGG - Chr1:90869042-90869061 MsG0180005365.01.T01:intron 35.0%
CCCATCAATTGATGAAGTTA+AGG - Chr1:90869143-90869162 MsG0180005365.01.T01:intron 35.0%
GATTTGGAAATGAGATTGTG+CGG + Chr1:90868901-90868920 None:intergenic 35.0%
GTATCTGAATTCTCATGGTT+GGG - Chr1:90868960-90868979 MsG0180005365.01.T01:intron 35.0%
GTCATAGAATGGATGAGATT+TGG + Chr1:90868917-90868936 None:intergenic 35.0%
GTTAACCTGCAAGTGTTAAA+TGG - Chr1:90869546-90869565 MsG0180005365.01.T01:intron 35.0%
GTTCACCTAGAATTGATATG+TGG + Chr1:90869614-90869633 None:intergenic 35.0%
TAATGGCTCATGAGACAAAA+GGG - Chr1:90867767-90867786 MsG0180005365.01.T01:CDS 35.0%
TATAAAGTCATTCGACAGGT+GGG - Chr1:90869255-90869274 MsG0180005365.01.T01:intron 35.0%
TATTTAAGAAGCAGGCATAC+CGG + Chr1:90867309-90867328 None:intergenic 35.0%
TGACTATAAAGTCATTCGAC+AGG - Chr1:90869251-90869270 MsG0180005365.01.T01:intron 35.0%
TGGCTTAAACTCTTCAATGT+TGG - Chr1:90869651-90869670 MsG0180005365.01.T01:intron 35.0%
TTAATGGCTCATGAGACAAA+AGG - Chr1:90867766-90867785 MsG0180005365.01.T01:CDS 35.0%
TTAGCTTCACTATGCTATCA+AGG - Chr1:90868026-90868045 MsG0180005365.01.T01:intron 35.0%
! ATAGTCTGAAATGTGATTCC+TGG - Chr1:90869340-90869359 MsG0180005365.01.T01:intron 35.0%
! ATATGCGGATTGTTAAATGG+AGG + Chr1:90869042-90869061 None:intergenic 35.0%
! CCAATATGCGGATTGTTAAA+TGG + Chr1:90869045-90869064 None:intergenic 35.0%
! TCTTTTTGTGCAGGTCTTAA+AGG - Chr1:90868172-90868191 MsG0180005365.01.T01:CDS 35.0%
! TTTCATAAAAGCGTGTTGGT+TGG + Chr1:90868668-90868687 None:intergenic 35.0%
!! AACTCTAGGATTGTATTTCC+TGG + Chr1:90868423-90868442 None:intergenic 35.0%
!! CGGAACATTTTGAAGAAATC+AGG + Chr1:90868881-90868900 None:intergenic 35.0%
!! TCTCAAACTTGTTACCAGAA+AGG + Chr1:90868996-90869015 None:intergenic 35.0%
!! TGCTCCACAATCTGTTTTAA+AGG - Chr1:90868210-90868229 MsG0180005365.01.T01:CDS 35.0%
!!! GCTCAAATCTGTTTTTGTCT+TGG - Chr1:90868111-90868130 MsG0180005365.01.T01:intron 35.0%
AACTTGGAGTAAAGGAATCG+TGG - Chr1:90869631-90869650 MsG0180005365.01.T01:intron 40.0%
ACATCAATTCAACCAGTTGC+AGG - Chr1:90868705-90868724 MsG0180005365.01.T01:intron 40.0%
ACCACTACTAACAGATGAGA+AGG + Chr1:90868750-90868769 None:intergenic 40.0%
ACTACTAACAGATGAGAAGG+AGG + Chr1:90868747-90868766 None:intergenic 40.0%
AGCTCCAATAGGAAGTTGAA+TGG + Chr1:90869688-90869707 None:intergenic 40.0%
AGGTTGTCAGCTGGATTAAT+CGG - Chr1:90867283-90867302 MsG0180005365.01.T01:CDS 40.0%
ATCCTTTCTGATAAGCCAAC+TGG - Chr1:90869369-90869388 MsG0180005365.01.T01:intron 40.0%
ATTCCTGTTAATGCAGTGAG+GGG + Chr1:90867653-90867672 None:intergenic 40.0%
CAACTGGTTGAATTGATGTC+AGG + Chr1:90868704-90868723 None:intergenic 40.0%
CTATAAAGTCATTCGACAGG+TGG - Chr1:90869254-90869273 MsG0180005365.01.T01:intron 40.0%
GACCTGCACAAAAAGATACA+TGG + Chr1:90868168-90868187 None:intergenic 40.0%
GATTCCTGTTAATGCAGTGA+GGG + Chr1:90867654-90867673 None:intergenic 40.0%
GGAAGTTGAATGGAAGTCAA+AGG + Chr1:90869678-90869697 None:intergenic 40.0%
GGTCTTAAAGGAAGGTTGTT+AGG - Chr1:90868184-90868203 MsG0180005365.01.T01:CDS 40.0%
TAGCTCAATTTGGATCGTTG+CGG + Chr1:90868494-90868513 None:intergenic 40.0%
TCATGCTTCACAATATCCCA+TGG + Chr1:90869303-90869322 None:intergenic 40.0%
TCCTTCTCATCTGTTAGTAG+TGG - Chr1:90868746-90868765 MsG0180005365.01.T01:intron 40.0%
TCTAGGTGAACTTGGAGTAA+AGG - Chr1:90869623-90869642 MsG0180005365.01.T01:intron 40.0%
TGATTCCTGTTAATGCAGTG+AGG + Chr1:90867655-90867674 None:intergenic 40.0%
TGTAAACTGCCAAGTCATTC+GGG + Chr1:90867583-90867602 None:intergenic 40.0%
TGTGAAGCATGAGTCTTTCT+TGG - Chr1:90869311-90869330 MsG0180005365.01.T01:intron 40.0%
TTCAACTTCCTATTGGAGCT+TGG - Chr1:90869688-90869707 MsG0180005365.01.T01:intron 40.0%
TTCGGATGATTAGTACAACG+GGG + Chr1:90867910-90867929 None:intergenic 40.0%
TTTGTGCAGGTCTTAAAGGA+AGG - Chr1:90868176-90868195 MsG0180005365.01.T01:CDS 40.0%
! AACCAGTTGGCTTATCAGAA+AGG + Chr1:90869374-90869393 None:intergenic 40.0%
! AGACAAGCATCGTCATAGAA+TGG + Chr1:90868928-90868947 None:intergenic 40.0%
! ATCAGAAAGGATTTTCCTCC+AGG + Chr1:90869361-90869380 None:intergenic 40.0%
! CTAGGTAATTTGTAGTGTCC+CGG + Chr1:90868295-90868314 None:intergenic 40.0%
! CTCTTTTTGCAGACAACTCT+AGG + Chr1:90868437-90868456 None:intergenic 40.0%
! GAATGACTTGGCAGTTTACA+TGG - Chr1:90867583-90867602 MsG0180005365.01.T01:CDS 40.0%
! GAGGGGAAGATAGTTCTTTT+AGG + Chr1:90867636-90867655 None:intergenic 40.0%
! TCCCATGTATCTTTTTGTGC+AGG - Chr1:90868163-90868182 MsG0180005365.01.T01:CDS 40.0%
! TCTAGGATTGTATTTCCTGG+AGG + Chr1:90868420-90868439 None:intergenic 40.0%
! TTAGCATTCTGGAAACCAGT+TGG + Chr1:90869387-90869406 None:intergenic 40.0%
!! TTTCGCCTTGTTTCCTTGTT+GGG + Chr1:90868390-90868409 None:intergenic 40.0%
AAGACCCCAACAAGGAAACA+AGG - Chr1:90868382-90868401 MsG0180005365.01.T01:intron 45.0%
ACTAACAGATGAGAAGGAGG+AGG + Chr1:90868744-90868763 None:intergenic 45.0%
ACTTGAATGGGGTGTGTCAT+TGG - Chr1:90869418-90869437 MsG0180005365.01.T01:intron 45.0%
ATTAGTACAACGGGGTAGGA+GGG + Chr1:90867902-90867921 None:intergenic 45.0%
CCAACTATAAGGTTGTCAGC+TGG - Chr1:90867274-90867293 MsG0180005365.01.T01:CDS 45.0%
CCAGCTGACAACCTTATAGT+TGG + Chr1:90867277-90867296 None:intergenic 45.0%
CCTATTGGAGCTTGGAAGAA+GGG - Chr1:90869696-90869715 MsG0180005365.01.T01:CDS 45.0%
GAGACCCATTTAACACTTGC+AGG + Chr1:90869554-90869573 None:intergenic 45.0%
GATGATTAGTACAACGGGGT+AGG + Chr1:90867906-90867925 None:intergenic 45.0%
GATTCGGCTATGACCATGTT+AGG - Chr1:90869226-90869245 MsG0180005365.01.T01:intron 45.0%
GGAAGCTCAGCAAAACTAGA+AGG + Chr1:90869174-90869193 None:intergenic 45.0%
TATGAAGGCAATCCTGCAAC+TGG + Chr1:90868720-90868739 None:intergenic 45.0%
TCCTATTGGAGCTTGGAAGA+AGG - Chr1:90869695-90869714 MsG0180005365.01.T01:CDS 45.0%
TGAGAAGGAGGAGGTTATGA+AGG + Chr1:90868735-90868754 None:intergenic 45.0%
TGTGTTGCATCTTCCAACCA+CGG - Chr1:90868626-90868645 MsG0180005365.01.T01:intron 45.0%
! GTCTGAAATGTGATTCCTGG+AGG - Chr1:90869343-90869362 MsG0180005365.01.T01:intron 45.0%
! TGCGGATTGTTAAATGGAGG+TGG + Chr1:90869039-90869058 None:intergenic 45.0%
! TTTTGCTGAGCTTCCACCTA+AGG - Chr1:90869179-90869198 MsG0180005365.01.T01:intron 45.0%
!! AAGCGTGTTGGTTGGCATAA+AGG + Chr1:90868660-90868679 None:intergenic 45.0%
!! GTTTCGCCTTGTTTCCTTGT+TGG + Chr1:90868391-90868410 None:intergenic 45.0%
!! TTCGCCTTGTTTCCTTGTTG+GGG + Chr1:90868389-90868408 None:intergenic 45.0%
AAAGGTCAACTCTCCGTGGT+TGG + Chr1:90868642-90868661 None:intergenic 50.0%
ACCATCAAGCACGCCTTCTA+AGG + Chr1:90869520-90869539 None:intergenic 50.0%
ACGGAATCACCCGAATGACT+TGG - Chr1:90867571-90867590 MsG0180005365.01.T01:CDS 50.0%
AGGCGAAACTAAAAGCCTCC+AGG - Chr1:90868402-90868421 MsG0180005365.01.T01:intron 50.0%
AGTATTTCCTTCACCGCCAG+AGG + Chr1:90867692-90867711 None:intergenic 50.0%
CAGGTTCAAAGACCCCAACA+AGG - Chr1:90868374-90868393 MsG0180005365.01.T01:intron 50.0%
CCATCAAGCACGCCTTCTAA+GGG + Chr1:90869519-90869538 None:intergenic 50.0%
CCCTTCTTCCAAGCTCCAAT+AGG + Chr1:90869699-90869718 None:intergenic 50.0%
CTTCCCCTCACTGCATTAAC+AGG - Chr1:90867647-90867666 MsG0180005365.01.T01:CDS 50.0%
GATTAGTACAACGGGGTAGG+AGG + Chr1:90867903-90867922 None:intergenic 50.0%
GCATAAAGGTCAACTCTCCG+TGG + Chr1:90868646-90868665 None:intergenic 50.0%
TGTCAGCTGGATTAATCGGC+CGG - Chr1:90867287-90867306 MsG0180005365.01.T01:CDS 50.0%
TTAGTACAACGGGGTAGGAG+GGG + Chr1:90867901-90867920 None:intergenic 50.0%
! AGCACGCCTTCTAAGGGTAA+AGG + Chr1:90869513-90869532 None:intergenic 50.0%
! CCCTTAGAAGGCGTGCTTGA+TGG - Chr1:90869516-90869535 MsG0180005365.01.T01:intron 55.0%
!! CACTAGCGAAGCATTGCCTC+TGG - Chr1:90867673-90867692 MsG0180005365.01.T01:CDS 55.0%
!! TAGCGAAGCATTGCCTCTGG+CGG - Chr1:90867676-90867695 MsG0180005365.01.T01:CDS 55.0%
AGCATTGCCTCTGGCGGTGA+AGG - Chr1:90867682-90867701 MsG0180005365.01.T01:CDS 60.0%
CAACGGGGTAGGAGGGGAGT+TGG + Chr1:90867895-90867914 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 90867256 90869743 90867256 ID=MsG0180005365.01;Name=MsG0180005365.01
Chr1 mRNA 90867256 90869743 90867256 ID=MsG0180005365.01.T01;Parent=MsG0180005365.01;Name=MsG0180005365.01.T01;_AED=0.48;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|318
Chr1 exon 90869691 90869743 90869691 ID=MsG0180005365.01.T01:exon:48106;Parent=MsG0180005365.01.T01
Chr1 exon 90868155 90868272 90868155 ID=MsG0180005365.01.T01:exon:48105;Parent=MsG0180005365.01.T01
Chr1 exon 90867256 90868041 90867256 ID=MsG0180005365.01.T01:exon:48104;Parent=MsG0180005365.01.T01
Chr1 CDS 90869691 90869743 90869691 ID=MsG0180005365.01.T01:cds;Parent=MsG0180005365.01.T01
Chr1 CDS 90868155 90868272 90868155 ID=MsG0180005365.01.T01:cds;Parent=MsG0180005365.01.T01
Chr1 CDS 90867256 90868041 90867256 ID=MsG0180005365.01.T01:cds;Parent=MsG0180005365.01.T01
Gene Sequence

>MsG0180005365.01.T01

ATGATGCCTTTGTTATTTCCAACTATAAGGTTGTCAGCTGGATTAATCGGCCGGATTGCCTTCATAACCTCCTCCTTCTCATCTGTTAGTAGTGGTAACTACGTTCCCGATGACATTGCTTTTTGCATTCTTTCTAAGCTTCCTGTTAAATCTATTAAGCGTTTTTCTTCTCAGTATCTGAATTCTCATGGTTGGGATTTTTATTTCCTTTCTGGTAACAAGTTTGAGAATCGAGTCAAATTGAATTTGCCACCTCCATTTAACAATCCGCATATTGGTCATATTCATATTTTAGGTTCTGCTGTTAATGACACTCTTTGTATCTATGATAATAAGAGAAATGCTATATTGTGGAACCCATCAATTGATGAAGTTAAGGTCATTCCTTCTAGTTTTGCTGAGCTTCCACCTAAGGTTATGAGAGATATTACTCTTAATGGATTCGGCTATGACCATGTTAGGAATGACTATAAAGTCATTCGACAGGTGGGTATAATTACATTTAATAATCATCCATGGGATATTGTGAAGCATGAGTCTTTCTTGGAGATTTATAGTCTGAAATGTGATTCCTGGAGGAAAATCCTTTCTGATAAGCCAACTGGTTTCCAGAATGCTAATAGTGTTGTATACTTGAATGGGGTGTGTCATTGGAGTGAGAAAACAGATGATTATGTCAATTTGGTATCATATGATTTGGACAATGAGGTGTTTTTTATAACACCTTTACCCTTAGAAGGCGTGCTTGATGGTTCTGTTGTTAACCTGCAAGTGTTAAATGGGTCTCTTGCTGCGATATTAAATCATAAAAAGACTATGTCTTTCCACATATCAATTCTAGGTGAACTTGGAGTAAAGGAATCGTGGCTTAAACTCTTCAATGTTGGACCTTTGACTTCCATTCAACTTCCTATTGGAGCTTGGAAGAAGGGCAATATATTCCTTAGAATATATTGA
Protein sequence

>MsG0180005365.01.T01

MMPLLFPTIRLSAGLIGRIAFITSSFSSVSSGNYVPDDIAFCILSKLPVKSIKRFSSQYLNSHGWDFYFLSGNKFENRVKLNLPPPFNNPHIGHIHILGSAVNDTLCIYDNKRNAILWNPSIDEVKVIPSSFAELPPKVMRDITLNGFGYDHVRNDYKVIRQVGIITFNNHPWDIVKHESFLEIYSLKCDSWRKILSDKPTGFQNANSVVYLNGVCHWSEKTDDYVNLVSYDLDNEVFFITPLPLEGVLDGSVVNLQVLNGSLAAILNHKKTMSFHISILGELGVKESWLKLFNVGPLTSIQLPIGAWKKGNIFLRIY*