AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030109.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030109.01.T01 MTR_5g037680 52.174 299 82 8 9 252 7 299 4.14e-83 256
MsG0580030109.01.T01 MTR_5g059430 44.817 328 100 11 3 252 18 342 8.64e-71 223
MsG0580030109.01.T01 MTR_5g069390 43.711 318 110 8 3 252 18 334 2.92e-70 224
MsG0580030109.01.T01 MTR_8g012090 42.456 285 110 9 7 252 13 282 5.96e-63 201
MsG0580030109.01.T01 MTR_5g097820 45.136 257 88 8 3 209 16 269 1.18e-58 187
MsG0580030109.01.T01 MTR_5g097650 69.565 138 32 3 3 130 15 152 1.82e-57 181
MsG0580030109.01.T01 MTR_5g096630 39.672 305 116 9 13 252 21 322 4.06e-56 185
MsG0580030109.01.T01 MTR_2g021770 37.346 324 125 9 2 252 6 324 2.85e-53 177
MsG0580030109.01.T01 MTR_4g028510 38.658 313 129 10 2 252 8 319 7.80e-52 175
MsG0580030109.01.T01 MTR_0054s0100 38.585 311 123 10 9 252 16 325 8.51e-52 174
MsG0580030109.01.T01 MTR_8g063440 38.384 297 127 10 7 252 9 300 1.88e-51 172
MsG0580030109.01.T01 MTR_0054s0090 39.355 310 120 10 9 252 16 323 6.07e-51 171
MsG0580030109.01.T01 MTR_6g086825 39.172 314 124 11 5 252 65 377 3.33e-50 171
MsG0580030109.01.T01 MTR_4g028680 36.656 311 136 9 2 252 8 317 6.45e-50 169
MsG0580030109.01.T01 MTR_5g096900 40.323 310 120 14 2 252 4 307 7.73e-50 166
MsG0580030109.01.T01 MTR_5g097220 37.778 315 126 10 7 252 10 323 8.91e-50 169
MsG0580030109.01.T01 MTR_4g028660 37.380 313 130 10 2 252 8 316 9.94e-50 168
MsG0580030109.01.T01 MTR_4g027450 37.380 313 130 10 2 252 8 316 9.94e-50 168
MsG0580030109.01.T01 MTR_7g104710 41.727 278 123 8 7 250 14 286 1.09e-49 166
MsG0580030109.01.T01 MTR_7g016930 39.161 286 126 11 7 252 13 290 2.27e-49 166
MsG0580030109.01.T01 MTR_6g080680 39.262 298 128 10 7 252 16 312 3.30e-49 167
MsG0580030109.01.T01 MTR_4g055820 37.304 319 118 11 7 252 11 320 4.52e-49 166
MsG0580030109.01.T01 MTR_6g461660 37.785 307 122 9 9 252 18 318 5.06e-49 166
MsG0580030109.01.T01 MTR_0831s0010 35.333 300 140 8 3 252 43 338 6.20e-49 167
MsG0580030109.01.T01 MTR_4g102410 38.141 312 120 13 9 252 60 366 7.16e-49 167
MsG0580030109.01.T01 MTR_7g069550 36.943 314 123 11 7 252 11 317 9.33e-49 166
MsG0580030109.01.T01 MTR_4g028750 37.582 306 128 9 7 252 13 315 1.21e-48 165
MsG0580030109.01.T01 MTR_5g096910 39.550 311 111 13 5 252 12 308 1.38e-48 165
MsG0580030109.01.T01 MTR_7g079640 39.175 291 125 12 6 252 9 291 5.73e-48 163
MsG0580030109.01.T01 MTR_3g011120 37.919 298 134 14 1 252 5 297 1.02e-47 162
MsG0580030109.01.T01 MTR_4g130330 37.662 308 126 10 7 252 4 307 1.55e-47 162
MsG0580030109.01.T01 MTR_2g022000 36.842 323 126 11 7 252 13 334 1.70e-47 163
MsG0580030109.01.T01 MTR_8g464770 39.865 296 121 13 7 252 9 297 4.25e-47 160
MsG0580030109.01.T01 MTR_5g097330 37.540 309 128 11 7 252 13 319 4.48e-47 161
MsG0580030109.01.T01 MTR_8g046310 38.462 286 128 10 9 252 15 294 7.95e-47 160
MsG0580030109.01.T01 MTR_2g021950 36.424 302 134 10 9 252 15 316 1.33e-46 160
MsG0580030109.01.T01 MTR_7g017170 36.842 304 124 10 10 252 18 314 3.15e-46 159
MsG0580030109.01.T01 MTR_7g017130 36.808 307 120 10 10 252 18 314 3.17e-46 159
MsG0580030109.01.T01 MTR_2g021800 36.420 324 127 12 7 252 13 335 6.42e-46 159
MsG0580030109.01.T01 MTR_5g074850 38.339 313 122 12 7 252 32 340 6.91e-46 164
MsG0580030109.01.T01 MTR_5g097350 36.364 286 126 9 19 252 25 306 8.86e-46 157
MsG0580030109.01.T01 MTR_5g072060 36.644 292 130 10 9 252 5 289 6.98e-45 159
MsG0580030109.01.T01 MTR_0129s0070 36.513 304 131 11 7 252 14 313 7.69e-45 155
MsG0580030109.01.T01 MTR_2g038680 36.760 321 122 11 7 252 13 327 9.04e-45 155
MsG0580030109.01.T01 MTR_1g007410 36.393 305 127 10 7 248 19 319 1.22e-44 155
MsG0580030109.01.T01 MTR_7g017040 36.688 308 124 11 9 252 15 315 8.28e-44 152
MsG0580030109.01.T01 MTR_8g013000 36.656 311 122 10 9 252 9 311 1.50e-43 152
MsG0580030109.01.T01 MTR_5g097680 34.835 333 127 10 9 252 16 347 1.73e-43 152
MsG0580030109.01.T01 MTR_0129s0120 36.184 304 132 11 7 252 14 313 1.74e-43 152
MsG0580030109.01.T01 MTR_5g075370 37.975 316 122 13 7 252 5 316 1.84e-43 157
MsG0580030109.01.T01 MTR_0134s0060 37.267 322 121 13 9 252 11 329 3.54e-43 151
MsG0580030109.01.T01 MTR_5g092850 35.599 309 137 7 4 252 10 316 4.86e-43 151
MsG0580030109.01.T01 MTR_5g094350 38.376 271 108 10 9 226 12 276 6.67e-43 147
MsG0580030109.01.T01 MTR_2g104340 35.669 314 120 11 9 252 13 314 1.52e-42 149
MsG0580030109.01.T01 MTR_5g024260 36.364 297 124 11 2 241 14 302 1.92e-42 149
MsG0580030109.01.T01 MTR_8g039500 34.812 293 145 11 7 257 9 297 2.35e-42 147
MsG0580030109.01.T01 MTR_6g090180 35.443 316 130 9 7 252 44 355 5.30e-42 149
MsG0580030109.01.T01 MTR_6g079770 37.267 322 121 14 9 252 16 334 7.82e-42 148
MsG0580030109.01.T01 MTR_1g053510 33.642 324 133 11 3 252 8 323 1.23e-41 147
MsG0580030109.01.T01 MTR_1g098180 35.740 277 140 9 1 252 10 273 2.35e-41 145
MsG0580030109.01.T01 MTR_1g007450 35.738 305 131 13 10 252 12 313 4.48e-41 146
MsG0580030109.01.T01 MTR_5g043605 37.407 270 106 10 9 252 24 256 4.51e-41 145
MsG0580030109.01.T01 MTR_0129s0050 35.542 332 128 12 1 252 1 326 5.28e-41 145
MsG0580030109.01.T01 MTR_6g079810 36.025 322 126 10 5 252 65 380 5.67e-41 146
MsG0580030109.01.T01 MTR_8g041270 36.275 306 115 9 9 241 14 312 1.47e-40 144
MsG0580030109.01.T01 MTR_6g478230 35.987 314 120 12 7 252 24 324 1.92e-40 144
MsG0580030109.01.T01 MTR_2g066200 33.876 307 140 14 7 257 9 308 4.18e-40 143
MsG0580030109.01.T01 MTR_2g104280 34.591 318 127 11 9 252 13 323 2.99e-39 141
MsG0580030109.01.T01 MTR_2g064950 35.897 312 118 13 9 252 9 306 7.55e-39 139
MsG0580030109.01.T01 MTR_2g034700 36.111 288 139 10 5 252 9 291 1.00e-38 139
MsG0580030109.01.T01 MTR_8g033140 32.530 332 135 10 2 252 11 334 1.09e-38 139
MsG0580030109.01.T01 MTR_8g467670 33.562 292 138 12 9 252 13 296 1.19e-38 139
MsG0580030109.01.T01 MTR_8g032980 31.343 335 142 7 2 252 8 338 2.11e-38 139
MsG0580030109.01.T01 MTR_8g046200 34.954 329 124 13 9 252 15 338 6.56e-38 137
MsG0580030109.01.T01 MTR_8g063330 31.847 314 142 7 2 252 6 310 2.05e-37 137
MsG0580030109.01.T01 MTR_8g064890 33.223 301 148 9 2 252 8 305 3.77e-37 135
MsG0580030109.01.T01 MTR_4g117550 37.363 273 112 11 7 225 14 281 3.76e-36 132
MsG0580030109.01.T01 MTR_8g033110 32.326 331 138 11 3 252 7 332 5.85e-36 132
MsG0580030109.01.T01 MTR_7g111700 34.014 294 124 9 7 252 12 283 9.62e-36 130
MsG0580030109.01.T01 MTR_2g066170 32.000 300 153 10 7 257 9 306 2.75e-35 130
MsG0580030109.01.T01 MTR_2g065860 32.890 301 141 11 7 252 9 303 7.10e-35 129
MsG0580030109.01.T01 MTR_8g033090 31.385 325 133 12 1 243 5 321 1.56e-34 128
MsG0580030109.01.T01 MTR_2g066150 32.963 270 146 9 7 249 9 270 2.08e-34 127
MsG0580030109.01.T01 MTR_5g074800 35.206 267 103 11 50 252 2 262 3.71e-34 126
MsG0580030109.01.T01 MTR_8g018110 33.562 292 120 10 3 226 7 292 4.69e-34 127
MsG0580030109.01.T01 MTR_8g046220 33.123 317 129 12 9 252 16 322 4.79e-34 127
MsG0580030109.01.T01 MTR_5g091140 34.967 306 119 11 8 252 46 332 2.39e-33 125
MsG0580030109.01.T01 MTR_1g007430 35.154 293 115 13 20 252 6 283 3.32e-33 123
MsG0580030109.01.T01 MTR_6g070880 36.726 226 82 7 9 173 31 256 2.82e-31 116
MsG0580030109.01.T01 MTR_6g071420 36.726 226 82 7 9 173 31 256 2.82e-31 116
MsG0580030109.01.T01 MTR_8g063370 33.562 292 138 13 7 252 25 306 3.11e-31 119
MsG0580030109.01.T01 MTR_1g076810 35.065 231 98 7 7 189 15 241 4.57e-31 121
MsG0580030109.01.T01 MTR_8g064790 29.181 281 130 9 5 252 10 254 1.54e-30 116
MsG0580030109.01.T01 MTR_8g036970 31.716 268 125 9 14 252 2 240 1.65e-30 117
MsG0580030109.01.T01 MTR_4g014370 32.615 325 134 15 7 252 8 326 1.99e-30 117
MsG0580030109.01.T01 MTR_3g019290 41.401 157 66 4 2 149 6 145 4.46e-30 111
MsG0580030109.01.T01 MTR_5g096070 45.033 151 57 5 7 144 23 160 4.96e-30 110
MsG0580030109.01.T01 MTR_2g065840 31.208 298 145 12 9 252 11 302 6.88e-30 115
MsG0580030109.01.T01 MTR_8g063350 30.403 273 136 12 9 252 13 260 1.07e-29 114
MsG0580030109.01.T01 MTR_1g050308 36.190 210 89 8 7 174 31 237 3.48e-29 113
MsG0580030109.01.T01 MTR_5g037190 33.750 240 116 10 10 211 16 250 6.57e-29 110
MsG0580030109.01.T01 MTR_6g078010 35.178 253 116 9 47 252 1 252 1.59e-28 111
MsG0580030109.01.T01 MTR_5g068490 38.953 172 81 9 97 252 33 196 6.34e-28 108
MsG0580030109.01.T01 MTR_5g092860 32.404 287 117 9 28 252 20 291 6.37e-28 110
MsG0580030109.01.T01 MTR_6g090250 31.646 316 122 13 28 252 29 341 1.46e-27 110
MsG0580030109.01.T01 MTR_5g091150 39.634 164 75 5 89 243 38 186 8.84e-27 103
MsG0580030109.01.T01 MTR_6g087620 37.436 195 85 6 84 252 22 205 1.14e-26 105
MsG0580030109.01.T01 MTR_6g465360 40.331 181 66 7 9 149 61 239 1.24e-26 105
MsG0580030109.01.T01 MTR_5g022850 32.509 283 124 10 9 252 15 269 1.02e-25 103
MsG0580030109.01.T01 MTR_3g047580 41.935 124 69 3 2 124 6 127 4.34e-25 96.7
MsG0580030109.01.T01 MTR_5g086590 35.882 170 80 6 108 252 11 176 5.04e-25 99.8
MsG0580030109.01.T01 MTR_8g073570 33.721 172 86 5 1 146 1 170 9.26e-25 97.1
MsG0580030109.01.T01 MTR_2g104260 33.086 269 110 8 10 215 14 275 1.08e-24 99.8
MsG0580030109.01.T01 MTR_6g079790 36.190 210 81 9 93 252 20 226 1.32e-23 97.4
MsG0580030109.01.T01 MTR_8g063310 28.523 298 157 12 7 252 19 312 1.49e-23 98.6
MsG0580030109.01.T01 MTR_4g014370 32.714 269 125 12 7 252 19 254 2.10e-22 94.7
MsG0580030109.01.T01 MTR_3g013740 28.682 258 141 7 7 222 41 297 3.51e-22 94.7
MsG0580030109.01.T01 MTR_4g007940 30.047 213 97 6 87 252 52 259 9.89e-22 92.8
MsG0580030109.01.T01 MTR_5g064700 31.556 225 95 9 86 252 65 288 1.64e-21 92.4
MsG0580030109.01.T01 MTR_1g050312 35.912 181 78 11 96 257 51 212 1.20e-20 89.0
MsG0580030109.01.T01 MTR_7g070440 31.008 258 136 11 9 230 6 257 1.42e-20 90.1
MsG0580030109.01.T01 MTR_5g023970 48.039 102 46 3 157 252 12 112 2.49e-20 86.3
MsG0580030109.01.T01 MTR_7g023800 33.333 231 122 9 50 252 2 228 7.40e-20 87.0
MsG0580030109.01.T01 MTR_6g004450 40.559 143 55 6 135 252 49 186 1.22e-19 85.9
MsG0580030109.01.T01 MTR_1g115205 33.613 238 80 10 7 194 26 235 1.34e-19 85.5
MsG0580030109.01.T01 MTR_8g041440 55.556 81 31 1 1 76 6 86 2.91e-19 81.3
MsG0580030109.01.T01 MTR_6g090260 45.714 105 47 3 157 252 76 179 1.21e-18 83.2
MsG0580030109.01.T01 MTR_6g090260 60.000 55 22 0 5 59 15 69 2.20e-13 68.6
MsG0580030109.01.T01 MTR_0044s0300 26.613 248 152 5 13 233 41 285 2.09e-18 84.0
MsG0580030109.01.T01 MTR_5g076490 31.599 269 105 10 47 252 1 253 2.38e-18 83.6
MsG0580030109.01.T01 MTR_3g018750 34.641 153 65 4 135 252 3 155 5.67e-18 80.9
MsG0580030109.01.T01 MTR_5g097850 35.676 185 66 8 89 252 11 163 5.65e-17 78.2
MsG0580030109.01.T01 MTR_3g011060 27.237 257 131 10 13 222 31 278 1.66e-16 78.6
MsG0580030109.01.T01 MTR_3g007360 29.278 263 138 13 18 240 60 314 1.72e-16 78.6
MsG0580030109.01.T01 MTR_3g103020 28.405 257 143 11 3 225 11 260 2.52e-16 78.2
MsG0580030109.01.T01 MTR_3g007410 28.897 263 139 12 18 240 60 314 2.83e-16 78.2
MsG0580030109.01.T01 MTR_2g078900 25.974 231 146 7 13 221 36 263 4.86e-16 77.0
MsG0580030109.01.T01 MTR_3g036430 25.316 237 141 8 13 233 23 239 5.25e-16 77.0
MsG0580030109.01.T01 MTR_0128s0020 28.014 282 157 12 10 247 18 297 5.72e-16 77.0
MsG0580030109.01.T01 MTR_4g021785 27.459 244 139 10 9 225 8 240 6.13e-16 76.6
MsG0580030109.01.T01 MTR_0115s0020 27.465 284 137 10 1 226 1 273 7.32e-16 76.6
MsG0580030109.01.T01 MTR_4g117770 28.571 245 143 12 2 220 3 241 8.38e-16 76.3
MsG0580030109.01.T01 MTR_4g117810 28.571 245 143 12 2 220 3 241 8.38e-16 76.3
MsG0580030109.01.T01 MTR_4g016000 30.303 165 79 4 115 252 2 157 1.12e-15 73.9
MsG0580030109.01.T01 MTR_6g009350 34.722 144 68 5 134 252 7 149 1.64e-15 73.2
MsG0580030109.01.T01 MTR_5g057710 27.966 236 142 7 13 221 49 283 3.10e-15 75.1
MsG0580030109.01.T01 MTR_6g087660 53.731 67 29 1 5 69 13 79 3.96e-15 72.0
MsG0580030109.01.T01 MTR_1g047080 30.603 232 107 12 47 236 1 220 8.88e-15 72.8
MsG0580030109.01.T01 MTR_7g017150 44.231 104 47 4 157 252 83 183 1.33e-14 72.0
MsG0580030109.01.T01 MTR_2g021150 30.769 195 104 7 4 169 8 200 1.48e-14 72.8
MsG0580030109.01.T01 MTR_2g021155 29.167 192 90 6 13 169 39 219 1.63e-14 73.6
MsG0580030109.01.T01 MTR_5g086780 28.800 250 77 7 9 252 15 169 1.72e-14 71.2
MsG0580030109.01.T01 MTR_7g101200 28.216 241 93 10 24 241 1 184 1.73e-14 71.2
MsG0580030109.01.T01 MTR_3g034180 30.890 191 101 8 9 170 122 310 1.89e-14 72.8
MsG0580030109.01.T01 MTR_6g048140 25.200 250 125 8 18 222 47 279 1.93e-14 72.8
MsG0580030109.01.T01 MTR_4g023130 27.313 227 115 7 9 223 8 196 3.03e-14 71.6
MsG0580030109.01.T01 MTR_3g014540 27.823 248 137 9 10 222 29 269 3.22e-14 72.0
MsG0580030109.01.T01 MTR_8g073550 27.128 188 112 5 13 175 33 220 3.62e-14 70.1
MsG0580030109.01.T01 MTR_0128s0070 28.102 274 152 12 10 240 22 293 3.77e-14 71.6
MsG0580030109.01.T01 MTR_8g032390 28.346 254 138 12 1 230 31 264 3.85e-14 71.6
MsG0580030109.01.T01 MTR_7g017120 43.269 104 48 4 157 252 82 182 3.85e-14 70.9
MsG0580030109.01.T01 MTR_3g006670 26.277 274 145 10 13 241 52 313 3.97e-14 71.6
MsG0580030109.01.T01 MTR_5g057790 26.639 244 135 9 13 221 49 283 4.62e-14 71.6
MsG0580030109.01.T01 MTR_8g101580 26.749 243 144 9 8 222 44 280 5.14e-14 71.2
MsG0580030109.01.T01 MTR_2g021920 34.395 157 65 6 134 252 36 192 5.24e-14 70.5
MsG0580030109.01.T01 MTR_4g117850 30.165 242 138 12 13 227 26 263 5.45e-14 71.2
MsG0580030109.01.T01 MTR_1g009110 25.497 302 154 15 13 258 17 303 5.84e-14 71.2
MsG0580030109.01.T01 MTR_3g030250 25.301 249 159 8 13 240 40 282 6.76e-14 70.9
MsG0580030109.01.T01 MTR_2g024110 22.464 276 163 10 10 247 4 266 1.52e-13 70.1
MsG0580030109.01.T01 MTR_4g109270 31.429 175 101 6 13 168 11 185 1.78e-13 69.7
MsG0580030109.01.T01 MTR_4g055060 25.397 252 148 9 13 227 33 281 2.03e-13 69.7
MsG0580030109.01.T01 MTR_4g133170 24.354 271 153 12 13 244 7 264 2.36e-13 69.3
MsG0580030109.01.T01 MTR_5g022420 23.166 259 173 6 9 247 26 278 2.96e-13 68.9
MsG0580030109.01.T01 MTR_3g030350 23.482 247 149 7 13 229 38 274 3.40e-13 68.9
MsG0580030109.01.T01 MTR_3g007430 26.778 239 138 9 18 223 51 285 3.57e-13 68.9
MsG0580030109.01.T01 MTR_4g023440 28.708 209 126 5 9 196 17 223 4.04e-13 68.6
MsG0580030109.01.T01 MTR_4g024890 24.254 268 154 11 1 225 1 262 5.21e-13 68.6
MsG0580030109.01.T01 MTR_5g098950 31.138 167 66 5 112 252 90 233 5.77e-13 67.4
MsG0580030109.01.T01 MTR_3g034130 26.172 256 147 11 9 225 8 260 7.56e-13 67.8
MsG0580030109.01.T01 MTR_0760s0010 24.900 249 152 8 18 240 55 294 8.90e-13 67.8
MsG0580030109.01.T01 MTR_7g060960 27.500 240 132 8 10 226 32 252 1.05e-12 67.4
MsG0580030109.01.T01 MTR_3g014570 25.490 255 128 10 13 222 32 269 1.15e-12 67.4
MsG0580030109.01.T01 MTR_3g009240 26.119 268 152 11 13 244 39 296 1.20e-12 67.4
MsG0580030109.01.T01 MTR_3g034160 26.275 255 148 9 9 225 8 260 1.28e-12 67.4
MsG0580030109.01.T01 MTR_3g013770 26.400 250 137 7 13 222 36 278 1.30e-12 67.4
MsG0580030109.01.T01 MTR_4g117750 29.744 195 114 9 23 196 16 208 1.85e-12 67.0
MsG0580030109.01.T01 MTR_5g070130 24.818 274 144 12 1 227 1 259 1.97e-12 66.6
MsG0580030109.01.T01 MTR_3g058440 26.641 259 149 13 13 236 38 290 2.84e-12 65.9
MsG0580030109.01.T01 MTR_7g055870 30.374 214 98 11 6 169 9 221 3.95e-12 65.9
MsG0580030109.01.T01 MTR_1g068835 22.878 271 159 11 13 244 7 266 4.34e-12 65.9
MsG0580030109.01.T01 MTR_2g046900 26.943 193 109 6 6 169 24 213 4.41e-12 65.9
MsG0580030109.01.T01 MTR_5g057040 31.210 157 87 5 13 149 49 204 4.65e-12 66.2
MsG0580030109.01.T01 MTR_2g426060 24.422 303 162 12 5 249 1 294 5.29e-12 65.5
MsG0580030109.01.T01 MTR_1g068875 22.344 273 163 11 10 244 4 265 7.67e-12 65.1
MsG0580030109.01.T01 MTR_8g013010 28.342 187 101 7 13 170 57 239 8.78e-12 64.3
MsG0580030109.01.T01 MTR_4g023380 25.424 236 116 8 24 225 30 239 9.40e-12 64.7
MsG0580030109.01.T01 MTR_5g057643 28.743 167 82 6 13 151 49 206 1.12e-11 63.5
MsG0580030109.01.T01 MTR_4g061340 26.838 272 156 11 13 246 29 295 1.30e-11 64.3
MsG0580030109.01.T01 MTR_1g068860 24.176 273 155 10 13 244 7 268 1.44e-11 63.9
MsG0580030109.01.T01 MTR_3g006570 24.865 185 112 5 13 170 24 208 1.49e-11 63.9
MsG0580030109.01.T01 MTR_6g053240 23.333 240 138 10 13 213 31 263 1.58e-11 63.9
MsG0580030109.01.T01 MTR_0667s0010 23.208 293 166 11 5 247 1 284 2.61e-11 63.5
MsG0580030109.01.T01 MTR_5g096050 43.902 82 28 2 189 252 2 83 2.76e-11 59.7
MsG0580030109.01.T01 MTR_7g407070 27.799 259 140 11 13 227 35 290 4.13e-11 62.8
MsG0580030109.01.T01 MTR_4g024870 26.577 222 119 10 12 196 46 260 4.65e-11 62.8
MsG0580030109.01.T01 MTR_1g097330 25.207 242 145 10 12 226 18 250 5.51e-11 62.4
MsG0580030109.01.T01 MTR_4g122850 29.545 176 95 7 21 169 12 185 6.18e-11 62.4
MsG0580030109.01.T01 MTR_7g055850 31.088 193 84 10 6 150 9 200 6.23e-11 61.6
MsG0580030109.01.T01 MTR_3g010430 25.654 191 105 5 13 171 39 224 8.31e-11 62.0
MsG0580030109.01.T01 MTR_3g024040 27.429 175 108 6 18 181 39 205 9.70e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030109.01.T01 AT3G16210 28.632 234 135 8 7 221 2 222 7.61e-21 90.5
MsG0580030109.01.T01 AT3G17490 28.033 239 140 9 9 221 5 237 1.15e-15 76.3
MsG0580030109.01.T01 AT1G70380 24.727 275 155 10 8 241 7 270 1.74e-13 69.7
MsG0580030109.01.T01 AT3G17530 26.695 236 142 10 13 221 9 240 5.86e-12 65.5
MsG0580030109.01.T01 AT4G12560 24.555 281 154 10 13 244 7 278 8.67e-12 65.1
MsG0580030109.01.T01 AT4G12560 24.555 281 154 10 13 244 7 278 8.67e-12 65.1
MsG0580030109.01.T01 AT4G12560 24.555 281 154 10 13 244 7 278 8.67e-12 65.1
MsG0580030109.01.T01 AT3G10240 25.100 251 162 9 13 241 30 276 1.58e-11 63.9

Find 40 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGTTATATTCTGTTTC+TGG 0.107046 5:-106771777 MsG0580030109.01.T01:intron
TTCCTCCTAGCTCTCTTTCT+TGG 0.191261 5:-106771556 MsG0580030109.01.T01:CDS
GTCCTTGGGATGGTGATTAT+TGG 0.210173 5:-106771809 MsG0580030109.01.T01:CDS
TCCTTGGGATGGTGATTATT+GGG 0.265372 5:-106771808 MsG0580030109.01.T01:CDS
AATCGTTTGAAAGATTTAAT+AGG 0.281695 5:+106771966 None:intergenic
CCGTAGAACTTCATGAAGTT+AGG 0.300724 5:+106771903 None:intergenic
TCCTCCTAGCTCTCTTTCTT+GGG 0.334161 5:-106771555 MsG0580030109.01.T01:CDS
TTAGGTTCTGGAAGTGTTCA+TGG 0.351174 5:-106771653 MsG0580030109.01.T01:intron
GCTACGTTTCACATTTGTAA+TGG 0.413178 5:-106771185 MsG0580030109.01.T01:CDS
CGTAGAACTTCATGAAGTTA+GGG 0.427373 5:+106771904 None:intergenic
AACCGATACGTAACAACTAT+TGG 0.427509 5:-106771406 MsG0580030109.01.T01:CDS
TGGGCTGAAAGTCATGCGTT+TGG 0.439795 5:-106771536 MsG0580030109.01.T01:CDS
TCACATTTGTAATGGAATCA+TGG 0.447893 5:-106771177 MsG0580030109.01.T01:CDS
AGATTCAGTGTGGAAACATT+TGG 0.450427 5:-106771255 MsG0580030109.01.T01:CDS
AGAGTCCATCCGTGTACAAT+TGG 0.452875 5:+106771375 None:intergenic
TAGCTTTGACTTCATTTGAC+TGG 0.456271 5:-106771319 MsG0580030109.01.T01:CDS
ATAGTCTAAGGTGTAACTCT+TGG 0.461068 5:-106771451 MsG0580030109.01.T01:CDS
AATCTGAGATATATAGTCTA+AGG 0.469752 5:-106771463 MsG0580030109.01.T01:CDS
ACACGGATGGACTCTCTCAC+TGG 0.505803 5:-106771367 MsG0580030109.01.T01:CDS
CCTAACTTCATGAAGTTCTA+CGG 0.515641 5:-106771903 MsG0580030109.01.T01:CDS
TGCCAATAGTTGTTACGTAT+CGG 0.529181 5:+106771404 None:intergenic
CCTTGGGATGGTGATTATTG+GGG 0.530125 5:-106771807 MsG0580030109.01.T01:CDS
ATTGTGGAATCCATCTACTA+AGG 0.530810 5:-106771591 MsG0580030109.01.T01:CDS
TTAAAACAAATATTATATTG+TGG 0.540370 5:-106771607 MsG0580030109.01.T01:CDS
TGAATCTGTGTCTGAAGGTA+AGG 0.543621 5:+106771271 None:intergenic
TCAGCCCAAGAAAGAGAGCT+AGG 0.548658 5:+106771551 None:intergenic
TCGTGTAATCAAGATGGAAA+GGG 0.551513 5:-106772045 None:intergenic
CGGCAAGAGTTTCTTAACAA+AGG 0.563627 5:-106771883 MsG0580030109.01.T01:CDS
TATGACCAATTGTACACGGA+TGG 0.571663 5:-106771380 MsG0580030109.01.T01:CDS
GACTATAAAGTGATGTGTCT+TGG 0.572348 5:-106771494 MsG0580030109.01.T01:CDS
TTCGTGTAATCAAGATGGAA+AGG 0.573124 5:-106772046 None:intergenic
TTGAATGTGTGTGCAAATCA+TGG 0.585387 5:-106771944 MsG0580030109.01.T01:CDS
CACACTGAATCTGTGTCTGA+AGG 0.605804 5:+106771266 None:intergenic
AAAATTGATGGTCCTTGGGA+TGG 0.620602 5:-106771819 MsG0580030109.01.T01:CDS
TTCATTTGACTGGAGCAATG+AGG 0.621185 5:-106771309 MsG0580030109.01.T01:CDS
CCCCAATAATCACCATCCCA+AGG 0.640281 5:+106771807 None:intergenic
GATCTTAAATCACACAGACA+CGG 0.649530 5:-106771207 MsG0580030109.01.T01:CDS
CTTCAGACACAGATTCAGTG+TGG 0.675692 5:-106771265 MsG0580030109.01.T01:CDS
GCACTATGACCAATTGTACA+CGG 0.680875 5:-106771384 MsG0580030109.01.T01:CDS
GCCCAAGAAAGAGAGCTAGG+AGG 0.702519 5:+106771554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAACAAATATTATATTG+TGG - Chr5:106771597-106771616 MsG0580030109.01.T01:CDS 10.0%
!! AAAAGGTTTGAGAATATATA+TGG - Chr5:106771451-106771470 MsG0580030109.01.T01:CDS 20.0%
!! AATCGTTTGAAAGATTTAAT+AGG + Chr5:106771241-106771260 None:intergenic 20.0%
!! CTCTTACATAAAAAAATTGA+TGG - Chr5:106771373-106771392 MsG0580030109.01.T01:CDS 20.0%
!! TATATATGGTCAAATTAGAT+TGG - Chr5:106771465-106771484 MsG0580030109.01.T01:CDS 20.0%
!!! CATCAATTTTTTTATGTAAG+AGG + Chr5:106771375-106771394 None:intergenic 20.0%
!!! GATTCTGGTTTTAATATTTT+AGG - Chr5:106771533-106771552 MsG0580030109.01.T01:CDS 20.0%
! TCAAATTAGATCCTGTATAT+TGG - Chr5:106771495-106771514 MsG0580030109.01.T01:CDS 25.0%
! TCCTGTATATTGGTATAAAA+CGG - Chr5:106771505-106771524 MsG0580030109.01.T01:CDS 25.0%
!! AATCTGAGATATATAGTCTA+AGG - Chr5:106771741-106771760 MsG0580030109.01.T01:intron 25.0%
!! ATAAAAAAATTGATGGTCCT+TGG - Chr5:106771380-106771399 MsG0580030109.01.T01:CDS 25.0%
!! ATTTTGAATTCCTTAGTAGA+TGG + Chr5:106771626-106771645 None:intergenic 25.0%
!! TAAAAAAATTGATGGTCCTT+GGG - Chr5:106771381-106771400 MsG0580030109.01.T01:CDS 25.0%
!! TTTGAGTTATATTCTGTTTC+TGG - Chr5:106771427-106771446 MsG0580030109.01.T01:CDS 25.0%
!!! AAACATTTGGTGCTTTTAAA+TGG - Chr5:106771962-106771981 MsG0580030109.01.T01:CDS 25.0%
!!! GGTTTTAATATTTTAGGTTC+TGG - Chr5:106771539-106771558 MsG0580030109.01.T01:CDS 25.0%
!!! TAATTTTGAGAGAATAGAGA+AGG + Chr5:106771218-106771237 None:intergenic 25.0%
!!! TATATTCTGTTTCTGGTAAA+AGG - Chr5:106771434-106771453 MsG0580030109.01.T01:CDS 25.0%
ACAGGATCTAATTTGACATT+TGG + Chr5:106771491-106771510 None:intergenic 30.0%
TATAAAACGGAGTATGATTC+TGG - Chr5:106771518-106771537 MsG0580030109.01.T01:CDS 30.0%
! TCACATTTGTAATGGAATCA+TGG - Chr5:106772027-106772046 MsG0580030109.01.T01:CDS 30.0%
! TCCGTTTTATACCAATATAC+AGG + Chr5:106771509-106771528 None:intergenic 30.0%
AACCGATACGTAACAACTAT+TGG - Chr5:106771798-106771817 MsG0580030109.01.T01:CDS 35.0%
AGATTCAGTGTGGAAACATT+TGG - Chr5:106771949-106771968 MsG0580030109.01.T01:CDS 35.0%
ATTGTGGAATCCATCTACTA+AGG - Chr5:106771613-106771632 MsG0580030109.01.T01:CDS 35.0%
CCTAACTTCATGAAGTTCTA+CGG - Chr5:106771301-106771320 MsG0580030109.01.T01:CDS 35.0%
CGTAGAACTTCATGAAGTTA+GGG + Chr5:106771303-106771322 None:intergenic 35.0%
GACTATAAAGTGATGTGTCT+TGG - Chr5:106771710-106771729 MsG0580030109.01.T01:intron 35.0%
GATCTTAAATCACACAGACA+CGG - Chr5:106771997-106772016 MsG0580030109.01.T01:CDS 35.0%
GCTACGTTTCACATTTGTAA+TGG - Chr5:106772019-106772038 MsG0580030109.01.T01:CDS 35.0%
TGCCAATAGTTGTTACGTAT+CGG + Chr5:106771803-106771822 None:intergenic 35.0%
TTGAATGTGTGTGCAAATCA+TGG - Chr5:106771260-106771279 MsG0580030109.01.T01:CDS 35.0%
! ATAGTCTAAGGTGTAACTCT+TGG - Chr5:106771753-106771772 MsG0580030109.01.T01:intron 35.0%
!! TAGCTTTGACTTCATTTGAC+TGG - Chr5:106771885-106771904 MsG0580030109.01.T01:CDS 35.0%
CCGTAGAACTTCATGAAGTT+AGG + Chr5:106771304-106771323 None:intergenic 40.0%
CGGCAAGAGTTTCTTAACAA+AGG - Chr5:106771321-106771340 MsG0580030109.01.T01:CDS 40.0%
GCACTATGACCAATTGTACA+CGG - Chr5:106771820-106771839 MsG0580030109.01.T01:CDS 40.0%
TATGACCAATTGTACACGGA+TGG - Chr5:106771824-106771843 MsG0580030109.01.T01:CDS 40.0%
TCCTTGGGATGGTGATTATT+GGG - Chr5:106771396-106771415 MsG0580030109.01.T01:CDS 40.0%
TGAATCTGTGTCTGAAGGTA+AGG + Chr5:106771936-106771955 None:intergenic 40.0%
TTCATTTGACTGGAGCAATG+AGG - Chr5:106771895-106771914 MsG0580030109.01.T01:CDS 40.0%
! AAAATTGATGGTCCTTGGGA+TGG - Chr5:106771385-106771404 MsG0580030109.01.T01:CDS 40.0%
!! TTAGGTTCTGGAAGTGTTCA+TGG - Chr5:106771551-106771570 MsG0580030109.01.T01:CDS 40.0%
AGAGTCCATCCGTGTACAAT+TGG + Chr5:106771832-106771851 None:intergenic 45.0%
CACACTGAATCTGTGTCTGA+AGG + Chr5:106771941-106771960 None:intergenic 45.0%
CCTTGGGATGGTGATTATTG+GGG - Chr5:106771397-106771416 MsG0580030109.01.T01:CDS 45.0%
CTTCAGACACAGATTCAGTG+TGG - Chr5:106771939-106771958 MsG0580030109.01.T01:CDS 45.0%
GTCCTTGGGATGGTGATTAT+TGG - Chr5:106771395-106771414 MsG0580030109.01.T01:CDS 45.0%
! TCCTCCTAGCTCTCTTTCTT+GGG - Chr5:106771649-106771668 MsG0580030109.01.T01:CDS 45.0%
! TTCCTCCTAGCTCTCTTTCT+TGG - Chr5:106771648-106771667 MsG0580030109.01.T01:CDS 45.0%
CCCCAATAATCACCATCCCA+AGG + Chr5:106771400-106771419 None:intergenic 50.0%
TCAGCCCAAGAAAGAGAGCT+AGG + Chr5:106771656-106771675 None:intergenic 50.0%
TGGGCTGAAAGTCATGCGTT+TGG - Chr5:106771668-106771687 MsG0580030109.01.T01:intron 50.0%
GCCCAAGAAAGAGAGCTAGG+AGG + Chr5:106771653-106771672 None:intergenic 55.0%
! ACACGGATGGACTCTCTCAC+TGG - Chr5:106771837-106771856 MsG0580030109.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 106771172 106772054 106771172 ID=MsG0580030109.01;Name=MsG0580030109.01
Chr5 mRNA 106771172 106772054 106771172 ID=MsG0580030109.01.T01;Parent=MsG0580030109.01;Name=MsG0580030109.01.T01;_AED=0.14;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|258
Chr5 exon 106771778 106772054 106771778 ID=MsG0580030109.01.T01:exon:14709;Parent=MsG0580030109.01.T01
Chr5 exon 106771172 106771671 106771172 ID=MsG0580030109.01.T01:exon:14708;Parent=MsG0580030109.01.T01
Chr5 CDS 106771778 106772054 106771778 ID=MsG0580030109.01.T01:cds;Parent=MsG0580030109.01.T01
Chr5 CDS 106771172 106771671 106771172 ID=MsG0580030109.01.T01:cds;Parent=MsG0580030109.01.T01
Gene Sequence

>MsG0580030109.01.T01

ATGGAAAGGGTAATAAAGAGTGAATATATACATGATGATATTGCCTTCTCTATTCTCTCAAAATTACCTATTAAATCTTTCAAACGATTTGAATGTGTGTGCAAATCATGGTCTCTCTTGTTTAATAACCCTAACTTCATGAAGTTCTACGGCAAGAGTTTCTTAACAAAGGATCATTCTATTTATGACGATACATCTCTCCTCTTACATAAAAAAATTGATGGTCCTTGGGATGGTGATTATTGGGGTGAAACATTTGAGTTATATTCTGTTTCTGGTTCTGGAAGTGTTCATGGAACTCTTTGTCTGTCTTGTGCATTTAAAACAAATATTATATTGTGGAATCCATCTACTAAGGAATTCAAAATCATTCCTCCTAGCTCTCTTTCTTGGGCTGAAAGTCATGCGTTTGGTTTCGACAGTGTTAAAGAAGACTATAAAGTGATGTGTCTTGGTGTAGTGCAATCTGAGATATATAGTCTAAGGTGTAACTCTTGGAGAAAAATTGATGTCAATATGCAACCGATACGTAACAACTATTGGCACTATGACCAATTGTACACGGATGGACTCTCTCACTGGCTCAGTCAAAGTGAAACAAATAATGTAGCTTTGACTTCATTTGACTGGAGCAATGAGGTTTTCTTTAAAACATCCTTACCTTCAGACACAGATTCAGTGTGGAAACATTTGGTGCTTTTAAATGGATCTATTGCTTTGATCTTAAATCACACAGACACGGCTACGTTTCACATTTGTAATGGAATCATGGACTAA
Protein sequence

>MsG0580030109.01.T01

MERVIKSEYIHDDIAFSILSKLPIKSFKRFECVCKSWSLLFNNPNFMKFYGKSFLTKDHSIYDDTSLLLHKKIDGPWDGDYWGETFELYSVSGSGSVHGTLCLSCAFKTNIILWNPSTKEFKIIPPSSLSWAESHAFGFDSVKEDYKVMCLGVVQSEIYSLRCNSWRKIDVNMQPIRNNYWHYDQLYTDGLSHWLSQSETNNVALTSFDWSNEVFFKTSLPSDTDSVWKHLVLLNGSIALILNHTDTATFHICNGIMD*