Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043340.01.T01 | XP_013467629.1 | 38.413 | 315 | 109 | 9 | 1 | 231 | 52 | 365 | 4.04E-46 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043340.01.T01 | MTR_1g053510 | 38.413 | 315 | 109 | 9 | 1 | 231 | 52 | 365 | 4.90e-50 | 168 |
| MsG0880043340.01.T01 | MTR_8g033110 | 34.268 | 321 | 119 | 8 | 1 | 229 | 51 | 371 | 6.11e-48 | 163 |
| MsG0880043340.01.T01 | MTR_8g018110 | 34.395 | 314 | 115 | 9 | 1 | 231 | 51 | 356 | 1.14e-43 | 151 |
| MsG0880043340.01.T01 | MTR_8g033090 | 32.710 | 321 | 122 | 8 | 1 | 229 | 51 | 369 | 2.24e-42 | 148 |
| MsG0880043340.01.T01 | MTR_8g046220 | 34.603 | 315 | 119 | 11 | 1 | 231 | 54 | 365 | 2.64e-39 | 140 |
| MsG0880043340.01.T01 | MTR_8g033140 | 32.609 | 322 | 125 | 9 | 1 | 231 | 56 | 376 | 1.79e-34 | 127 |
| MsG0880043340.01.T01 | MTR_8g032980 | 30.952 | 336 | 119 | 8 | 1 | 231 | 53 | 380 | 2.55e-34 | 127 |
| MsG0880043340.01.T01 | MTR_8g035690 | 35.018 | 277 | 107 | 10 | 3 | 226 | 1 | 257 | 1.55e-33 | 122 |
| MsG0880043340.01.T01 | MTR_8g046310 | 34.028 | 288 | 130 | 10 | 1 | 231 | 53 | 337 | 2.81e-33 | 124 |
| MsG0880043340.01.T01 | MTR_1g007450 | 30.195 | 308 | 137 | 9 | 1 | 231 | 49 | 355 | 2.76e-29 | 114 |
| MsG0880043340.01.T01 | MTR_8g033000 | 46.763 | 139 | 63 | 2 | 104 | 231 | 184 | 322 | 5.06e-28 | 109 |
| MsG0880043340.01.T01 | MTR_8g046200 | 28.485 | 330 | 129 | 9 | 7 | 231 | 54 | 381 | 1.68e-27 | 108 |
| MsG0880043340.01.T01 | MTR_2g066150 | 34.296 | 277 | 129 | 10 | 1 | 231 | 49 | 318 | 5.43e-27 | 106 |
| MsG0880043340.01.T01 | MTR_8g063440 | 31.293 | 294 | 139 | 8 | 1 | 231 | 49 | 342 | 4.58e-26 | 104 |
| MsG0880043340.01.T01 | MTR_0129s0070 | 30.333 | 300 | 132 | 12 | 1 | 226 | 54 | 350 | 1.48e-24 | 100 |
| MsG0880043340.01.T01 | MTR_8g464770 | 31.271 | 291 | 134 | 10 | 4 | 231 | 52 | 339 | 1.01e-23 | 98.2 |
| MsG0880043340.01.T01 | MTR_0129s0120 | 28.053 | 303 | 145 | 8 | 1 | 231 | 54 | 355 | 2.17e-23 | 97.4 |
| MsG0880043340.01.T01 | MTR_7g111700 | 36.449 | 214 | 115 | 9 | 36 | 231 | 115 | 325 | 4.49e-23 | 96.3 |
| MsG0880043340.01.T01 | MTR_5g097330 | 27.302 | 315 | 139 | 9 | 1 | 231 | 53 | 361 | 5.89e-23 | 96.3 |
| MsG0880043340.01.T01 | MTR_6g080680 | 29.373 | 303 | 138 | 11 | 1 | 231 | 56 | 354 | 3.15e-22 | 94.4 |
| MsG0880043340.01.T01 | MTR_3g011120 | 31.186 | 295 | 133 | 10 | 1 | 231 | 51 | 339 | 6.46e-21 | 90.1 |
| MsG0880043340.01.T01 | MTR_0129s0050 | 27.103 | 321 | 140 | 10 | 1 | 231 | 51 | 367 | 1.86e-20 | 89.4 |
| MsG0880043340.01.T01 | MTR_6g078010 | 31.760 | 233 | 110 | 11 | 36 | 231 | 74 | 294 | 9.16e-20 | 86.7 |
| MsG0880043340.01.T01 | MTR_8g012090 | 35.260 | 173 | 93 | 7 | 66 | 231 | 164 | 324 | 1.25e-19 | 86.3 |
| MsG0880043340.01.T01 | MTR_0831s0010 | 29.592 | 294 | 140 | 11 | 1 | 229 | 87 | 378 | 1.48e-19 | 87.0 |
| MsG0880043340.01.T01 | MTR_4g028660 | 34.054 | 185 | 86 | 6 | 80 | 231 | 177 | 358 | 2.31e-19 | 86.3 |
| MsG0880043340.01.T01 | MTR_4g027450 | 34.054 | 185 | 86 | 6 | 80 | 231 | 177 | 358 | 2.31e-19 | 86.3 |
| MsG0880043340.01.T01 | MTR_2g034700 | 29.966 | 297 | 126 | 11 | 1 | 230 | 51 | 332 | 2.31e-19 | 85.9 |
| MsG0880043340.01.T01 | MTR_5g068490 | 33.673 | 196 | 109 | 5 | 54 | 231 | 46 | 238 | 3.68e-19 | 84.3 |
| MsG0880043340.01.T01 | MTR_1g007430 | 35.542 | 166 | 82 | 5 | 80 | 220 | 149 | 314 | 3.79e-19 | 84.7 |
| MsG0880043340.01.T01 | MTR_5g086590 | 35.714 | 182 | 92 | 7 | 74 | 231 | 38 | 218 | 7.88e-19 | 82.4 |
| MsG0880043340.01.T01 | MTR_8g467670 | 27.551 | 294 | 144 | 11 | 1 | 231 | 51 | 338 | 1.29e-18 | 84.0 |
| MsG0880043340.01.T01 | MTR_4g028510 | 27.653 | 311 | 142 | 9 | 1 | 231 | 54 | 361 | 1.44e-18 | 84.3 |
| MsG0880043340.01.T01 | MTR_2g021770 | 27.500 | 320 | 141 | 13 | 1 | 231 | 49 | 366 | 1.59e-18 | 84.0 |
| MsG0880043340.01.T01 | MTR_1g098180 | 30.213 | 235 | 130 | 7 | 3 | 206 | 58 | 289 | 2.92e-18 | 82.8 |
| MsG0880043340.01.T01 | MTR_2g066200 | 29.236 | 301 | 141 | 12 | 1 | 231 | 49 | 347 | 3.70e-18 | 82.8 |
| MsG0880043340.01.T01 | MTR_1g047080 | 31.858 | 226 | 94 | 6 | 1 | 173 | 1 | 219 | 3.98e-18 | 81.6 |
| MsG0880043340.01.T01 | MTR_4g028750 | 33.149 | 181 | 91 | 5 | 80 | 231 | 178 | 357 | 4.21e-18 | 82.4 |
| MsG0880043340.01.T01 | MTR_8g063350 | 35.503 | 169 | 85 | 5 | 80 | 226 | 131 | 297 | 5.82e-18 | 81.6 |
| MsG0880043340.01.T01 | MTR_5g091140 | 29.242 | 277 | 137 | 10 | 3 | 220 | 87 | 363 | 6.27e-18 | 82.0 |
| MsG0880043340.01.T01 | MTR_2g021950 | 31.016 | 187 | 94 | 7 | 80 | 231 | 172 | 358 | 1.11e-17 | 81.3 |
| MsG0880043340.01.T01 | MTR_6g009350 | 30.928 | 194 | 97 | 7 | 72 | 231 | 1 | 191 | 1.93e-17 | 77.8 |
| MsG0880043340.01.T01 | MTR_2g066170 | 29.180 | 305 | 134 | 12 | 1 | 231 | 49 | 345 | 3.10e-17 | 80.1 |
| MsG0880043340.01.T01 | MTR_4g055820 | 27.184 | 309 | 144 | 8 | 1 | 228 | 51 | 359 | 3.66e-17 | 79.7 |
| MsG0880043340.01.T01 | MTR_4g007940 | 34.197 | 193 | 85 | 7 | 80 | 231 | 110 | 301 | 6.70e-17 | 78.6 |
| MsG0880043340.01.T01 | MTR_6g086825 | 26.349 | 315 | 146 | 10 | 1 | 231 | 107 | 419 | 6.81e-17 | 79.3 |
| MsG0880043340.01.T01 | MTR_0054s0100 | 32.620 | 187 | 91 | 6 | 75 | 226 | 176 | 362 | 1.15e-16 | 78.6 |
| MsG0880043340.01.T01 | MTR_0134s0060 | 28.395 | 243 | 114 | 8 | 44 | 226 | 124 | 366 | 1.55e-16 | 78.2 |
| MsG0880043340.01.T01 | MTR_0054s0090 | 32.620 | 187 | 91 | 6 | 75 | 226 | 174 | 360 | 1.69e-16 | 78.2 |
| MsG0880043340.01.T01 | MTR_6g004450 | 34.375 | 192 | 89 | 10 | 72 | 231 | 42 | 228 | 1.92e-16 | 76.6 |
| MsG0880043340.01.T01 | MTR_7g017130 | 27.946 | 297 | 141 | 11 | 1 | 225 | 55 | 350 | 2.22e-16 | 77.8 |
| MsG0880043340.01.T01 | MTR_5g097350 | 31.034 | 174 | 95 | 5 | 80 | 231 | 177 | 347 | 2.32e-16 | 77.4 |
| MsG0880043340.01.T01 | MTR_7g017170 | 27.946 | 297 | 141 | 11 | 1 | 225 | 55 | 350 | 2.37e-16 | 77.8 |
| MsG0880043340.01.T01 | MTR_6g079770 | 33.673 | 196 | 86 | 8 | 80 | 231 | 181 | 376 | 2.93e-16 | 77.4 |
| MsG0880043340.01.T01 | MTR_5g043605 | 35.260 | 173 | 91 | 5 | 80 | 231 | 127 | 299 | 4.03e-16 | 76.6 |
| MsG0880043340.01.T01 | MTR_5g069390 | 33.684 | 190 | 94 | 8 | 74 | 231 | 187 | 376 | 1.10e-15 | 75.9 |
| MsG0880043340.01.T01 | MTR_4g028680 | 29.167 | 240 | 115 | 9 | 39 | 231 | 128 | 359 | 1.14e-15 | 75.5 |
| MsG0880043340.01.T01 | MTR_6g461660 | 33.862 | 189 | 94 | 8 | 68 | 226 | 168 | 355 | 1.41e-15 | 75.5 |
| MsG0880043340.01.T01 | MTR_2g065860 | 26.910 | 301 | 148 | 10 | 1 | 231 | 49 | 347 | 2.03e-15 | 74.7 |
| MsG0880043340.01.T01 | MTR_8g039500 | 29.153 | 295 | 134 | 11 | 1 | 229 | 49 | 334 | 2.93e-15 | 73.9 |
| MsG0880043340.01.T01 | MTR_6g079810 | 30.144 | 209 | 102 | 9 | 65 | 231 | 216 | 422 | 3.33e-15 | 74.3 |
| MsG0880043340.01.T01 | MTR_1g050312 | 29.741 | 232 | 109 | 9 | 33 | 217 | 13 | 237 | 4.42e-15 | 73.2 |
| MsG0880043340.01.T01 | MTR_7g019250 | 33.728 | 169 | 93 | 5 | 80 | 229 | 225 | 393 | 6.59e-15 | 73.6 |
| MsG0880043340.01.T01 | MTR_4g130330 | 32.787 | 183 | 92 | 6 | 80 | 231 | 167 | 349 | 7.00e-15 | 73.2 |
| MsG0880043340.01.T01 | MTR_5g024260 | 29.355 | 310 | 136 | 12 | 1 | 231 | 59 | 364 | 1.03e-14 | 72.8 |
| MsG0880043340.01.T01 | MTR_5g096910 | 31.250 | 192 | 95 | 8 | 65 | 231 | 172 | 351 | 1.72e-14 | 72.0 |
| MsG0880043340.01.T01 | MTR_5g097850 | 42.000 | 100 | 48 | 2 | 142 | 231 | 106 | 205 | 1.83e-14 | 70.9 |
| MsG0880043340.01.T01 | MTR_5g022850 | 32.973 | 185 | 81 | 8 | 76 | 220 | 119 | 300 | 1.93e-14 | 72.0 |
| MsG0880043340.01.T01 | MTR_2g065840 | 26.578 | 301 | 148 | 9 | 1 | 231 | 49 | 346 | 1.98e-14 | 72.0 |
| MsG0880043340.01.T01 | MTR_5g023970 | 36.111 | 144 | 79 | 5 | 95 | 231 | 17 | 154 | 2.30e-14 | 69.7 |
| MsG0880043340.01.T01 | MTR_8g063330 | 34.444 | 180 | 84 | 8 | 80 | 226 | 169 | 347 | 1.13e-13 | 70.1 |
| MsG0880043340.01.T01 | MTR_7g069550 | 26.861 | 309 | 139 | 15 | 1 | 226 | 51 | 355 | 1.28e-13 | 69.7 |
| MsG0880043340.01.T01 | MTR_4g102410 | 26.367 | 311 | 146 | 14 | 1 | 229 | 98 | 407 | 1.39e-13 | 69.7 |
| MsG0880043340.01.T01 | MTR_3g018750 | 29.000 | 200 | 90 | 8 | 80 | 231 | 4 | 199 | 4.34e-13 | 67.0 |
| MsG0880043340.01.T01 | MTR_5g096050 | 50.667 | 75 | 33 | 2 | 136 | 206 | 25 | 99 | 5.43e-13 | 63.9 |
| MsG0880043340.01.T01 | MTR_5g074850 | 28.571 | 217 | 112 | 9 | 58 | 231 | 168 | 384 | 1.44e-12 | 67.0 |
| MsG0880043340.01.T01 | MTR_5g096630 | 27.778 | 198 | 97 | 7 | 80 | 231 | 176 | 373 | 1.47e-12 | 66.6 |
| MsG0880043340.01.T01 | MTR_6g087620 | 31.746 | 189 | 103 | 8 | 62 | 231 | 66 | 247 | 1.86e-12 | 65.5 |
| MsG0880043340.01.T01 | MTR_5g074800 | 31.606 | 193 | 90 | 10 | 75 | 226 | 109 | 300 | 4.50e-12 | 65.1 |
| MsG0880043340.01.T01 | MTR_8g036970 | 37.719 | 114 | 62 | 3 | 122 | 231 | 174 | 282 | 5.94e-12 | 64.7 |
| MsG0880043340.01.T01 | MTR_7g023800 | 35.484 | 155 | 77 | 8 | 80 | 226 | 126 | 265 | 1.16e-11 | 63.5 |
| MsG0880043340.01.T01 | MTR_2g022000 | 30.151 | 199 | 91 | 8 | 80 | 231 | 179 | 376 | 1.41e-11 | 63.9 |
| MsG0880043340.01.T01 | MTR_2g104340 | 25.652 | 230 | 118 | 8 | 54 | 231 | 128 | 356 | 1.49e-11 | 63.5 |
| MsG0880043340.01.T01 | MTR_5g092850 | 30.457 | 197 | 87 | 8 | 80 | 231 | 169 | 360 | 1.80e-11 | 63.5 |
| MsG0880043340.01.T01 | MTR_5g098950 | 30.857 | 175 | 74 | 6 | 80 | 230 | 122 | 273 | 2.01e-11 | 62.8 |
| MsG0880043340.01.T01 | MTR_5g072060 | 27.083 | 288 | 145 | 12 | 1 | 226 | 43 | 327 | 2.95e-11 | 63.2 |
| MsG0880043340.01.T01 | MTR_5g037680 | 30.588 | 170 | 100 | 6 | 80 | 231 | 172 | 341 | 5.02e-11 | 62.0 |
| MsG0880043340.01.T01 | MTR_5g096920 | 30.631 | 111 | 72 | 2 | 126 | 231 | 1 | 111 | 8.24e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCCACACATTAAAATTT+TGG | 0.087812 | 8:-23343804 | MsG0880043340.01.T01:CDS |
| CCTTAGAGTTCGATGGAAAT+TGG | 0.208646 | 8:-23343571 | MsG0880043340.01.T01:CDS |
| TTGGGCTCCGCTAGTGTTAA+TGG | 0.240094 | 8:-23343785 | MsG0880043340.01.T01:CDS |
| AATTTACGTCCACAGGGATT+TGG | 0.269319 | 8:-23343644 | MsG0880043340.01.T01:intron |
| CCAATTTCCATCGAACTCTA+AGG | 0.282427 | 8:+23343571 | None:intergenic |
| GAACAAGTGAACATGCATTT+GGG | 0.341006 | 8:-23343291 | MsG0880043340.01.T01:CDS |
| GTCGTCGTTCTCGTCATGTT+TGG | 0.350422 | 8:+23343951 | None:intergenic |
| ATGCACAATGATTCGCGATA+TGG | 0.354178 | 8:+23343889 | None:intergenic |
| CTCTTTATTCCAACCGCAAT+AGG | 0.354665 | 8:+23343132 | None:intergenic |
| ATTTACGTCCACAGGGATTT+GGG | 0.369598 | 8:-23343643 | MsG0880043340.01.T01:intron |
| AGAACAAGTGAACATGCATT+TGG | 0.372404 | 8:-23343292 | MsG0880043340.01.T01:CDS |
| AATGAATTCTGCCATTGGTT+GGG | 0.381202 | 8:-23343399 | MsG0880043340.01.T01:CDS |
| CATGAAATCTATCTTCATAA+AGG | 0.384392 | 8:+23343866 | None:intergenic |
| TATTCTGCATAAAAGAAAAC+TGG | 0.390046 | 8:-23343104 | MsG0880043340.01.T01:CDS |
| CCATGTTAGAGATGATTATA+AGG | 0.397199 | 8:-23343615 | MsG0880043340.01.T01:CDS |
| ATGATTTACTGAGATTAGAT+TGG | 0.406201 | 8:-23343846 | MsG0880043340.01.T01:CDS |
| CTTAGAGTTCGATGGAAATT+GGG | 0.410353 | 8:-23343570 | MsG0880043340.01.T01:CDS |
| AGGATGCATAAAACAAGTTA+AGG | 0.429906 | 8:+23343152 | None:intergenic |
| TTTGTGTCCTTTGCTTTAGC+AGG | 0.433067 | 8:+23343917 | None:intergenic |
| GAATGAATTCTGCCATTGGT+TGG | 0.473449 | 8:-23343400 | MsG0880043340.01.T01:CDS |
| TTTATGCATCCTATTGCGGT+TGG | 0.484747 | 8:-23343141 | MsG0880043340.01.T01:CDS |
| AACTCAATGTCAAGGAATCA+TGG | 0.485829 | 8:-23343194 | MsG0880043340.01.T01:CDS |
| TGTGGGTCGCCCTGTGGAAA+AGG | 0.514337 | 8:+23343818 | None:intergenic |
| TTGCATTATGCCTGAGTGAG+AGG | 0.551679 | 8:+23343314 | None:intergenic |
| CGATATCCCTTAGAGTTCGA+TGG | 0.552816 | 8:-23343578 | MsG0880043340.01.T01:CDS |
| CAATTTCCATCGAACTCTAA+GGG | 0.556427 | 8:+23343572 | None:intergenic |
| ACTTGAATGAATTCTGCCAT+TGG | 0.557851 | 8:-23343404 | MsG0880043340.01.T01:CDS |
| GTTCGATGGAAATTGGGAGA+TGG | 0.561701 | 8:-23343564 | MsG0880043340.01.T01:CDS |
| TGCATTATGCCTGAGTGAGA+GGG | 0.563362 | 8:+23343315 | None:intergenic |
| CATGGACTAAACTCTTGTGT+TGG | 0.565388 | 8:-23343176 | MsG0880043340.01.T01:CDS |
| TTTGGGTGAACTCAATGTCA+AGG | 0.569545 | 8:-23343202 | MsG0880043340.01.T01:CDS |
| CCTTATAATCATCTCTAACA+TGG | 0.570120 | 8:+23343615 | None:intergenic |
| ACATCTCTACTACTGCCTCA+TGG | 0.574886 | 8:+23343525 | None:intergenic |
| TATGCCTGAGTGAGAGGGCA+AGG | 0.585067 | 8:+23343320 | None:intergenic |
| AACAAGTGAACATGCATTTG+GGG | 0.594901 | 8:-23343290 | MsG0880043340.01.T01:CDS |
| GGGTCGCCCTGTGGAAAAGG+AGG | 0.595336 | 8:+23343821 | None:intergenic |
| TGATTATAAGGTGATTCAGA+AGG | 0.602312 | 8:-23343603 | MsG0880043340.01.T01:CDS |
| ACAACCTTGCCCTCTCACTC+AGG | 0.611862 | 8:-23343324 | MsG0880043340.01.T01:CDS |
| GTCATGTTTGGATATGACAT+TGG | 0.616468 | 8:+23343963 | None:intergenic |
| GGCACTCTTTGTCTCTACAA+AGG | 0.637940 | 8:-23343764 | MsG0880043340.01.T01:intron |
| CACTTGTTGAGCCCAACCAA+TGG | 0.638596 | 8:+23343388 | None:intergenic |
| TGTGTCTCCTGCTAAAGCAA+AGG | 0.644385 | 8:-23343924 | MsG0880043340.01.T01:CDS |
| AAGAGTGCCATTAACACTAG+CGG | 0.695988 | 8:+23343778 | None:intergenic |
| TTATAATGACACTTTCCATG+AGG | 0.704397 | 8:-23343540 | MsG0880043340.01.T01:CDS |
| ACAAGTGAACATGCATTTGG+GGG | 0.710216 | 8:-23343289 | MsG0880043340.01.T01:CDS |
| TTAATGTGTGGGTCGCCCTG+TGG | 0.713198 | 8:+23343812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATTCCTTTGTACA+AGG | + | Chr8:23343373-23343392 | None:intergenic | 20.0% |
| !! | TATTAAATTCCTTTGTACAA+GGG | + | Chr8:23343372-23343391 | None:intergenic | 20.0% |
| !!! | TATTTTCACATATGGATTTT+GGG | - | Chr8:23343858-23343877 | MsG0880043340.01.T01:CDS | 20.0% |
| !!! | TTATTTTCACATATGGATTT+TGG | - | Chr8:23343857-23343876 | MsG0880043340.01.T01:CDS | 20.0% |
| ! | ATGATTTACTGAGATTAGAT+TGG | - | Chr8:23343231-23343250 | MsG0880043340.01.T01:CDS | 25.0% |
| ! | CATGAAATCTATCTTCATAA+AGG | + | Chr8:23343214-23343233 | None:intergenic | 25.0% |
| ! | TATTCTGCATAAAAGAAAAC+TGG | - | Chr8:23343973-23343992 | MsG0880043340.01.T01:CDS | 25.0% |
| ! | TGTACATAACAATTGTATTG+TGG | - | Chr8:23343344-23343363 | MsG0880043340.01.T01:CDS | 25.0% |
| !!! | TGACTTCTTATTTTCACATA+TGG | - | Chr8:23343850-23343869 | MsG0880043340.01.T01:CDS | 25.0% |
| AGGATGCATAAAACAAGTTA+AGG | + | Chr8:23343928-23343947 | None:intergenic | 30.0% | |
| ATTAATCTCAATATCCTCGT+AGG | + | Chr8:23343416-23343435 | None:intergenic | 30.0% | |
| CCATGTTAGAGATGATTATA+AGG | - | Chr8:23343462-23343481 | MsG0880043340.01.T01:intron | 30.0% | |
| CCTTATAATCATCTCTAACA+TGG | + | Chr8:23343465-23343484 | None:intergenic | 30.0% | |
| GCAAAGAAACAGGAATATTA+AGG | + | Chr8:23343635-23343654 | None:intergenic | 30.0% | |
| TGATTATAAGGTGATTCAGA+AGG | - | Chr8:23343474-23343493 | MsG0880043340.01.T01:intron | 30.0% | |
| TTATAATGACACTTTCCATG+AGG | - | Chr8:23343537-23343556 | MsG0880043340.01.T01:CDS | 30.0% | |
| ! | GACCCACACATTAAAATTTT+GGG | - | Chr8:23343274-23343293 | MsG0880043340.01.T01:CDS | 30.0% |
| !! | AGCCCAAAATTTTAATGTGT+GGG | + | Chr8:23343279-23343298 | None:intergenic | 30.0% |
| !! | TTGTTTTATGCATCCTATTG+CGG | - | Chr8:23343932-23343951 | MsG0880043340.01.T01:CDS | 30.0% |
| AACAAGTGAACATGCATTTG+GGG | - | Chr8:23343787-23343806 | MsG0880043340.01.T01:CDS | 35.0% | |
| AACTCAATGTCAAGGAATCA+TGG | - | Chr8:23343883-23343902 | MsG0880043340.01.T01:CDS | 35.0% | |
| ACTTGAATGAATTCTGCCAT+TGG | - | Chr8:23343673-23343692 | MsG0880043340.01.T01:intron | 35.0% | |
| AGAACAAGTGAACATGCATT+TGG | - | Chr8:23343785-23343804 | MsG0880043340.01.T01:CDS | 35.0% | |
| CAATTTCCATCGAACTCTAA+GGG | + | Chr8:23343508-23343527 | None:intergenic | 35.0% | |
| CTTAGAGTTCGATGGAAATT+GGG | - | Chr8:23343507-23343526 | MsG0880043340.01.T01:intron | 35.0% | |
| GAACAAGTGAACATGCATTT+GGG | - | Chr8:23343786-23343805 | MsG0880043340.01.T01:CDS | 35.0% | |
| GAGATTAATTTACGTCCACA+GGG | - | Chr8:23343427-23343446 | MsG0880043340.01.T01:intron | 35.0% | |
| GTCATGTTTGGATATGACAT+TGG | + | Chr8:23343117-23343136 | None:intergenic | 35.0% | |
| TAACTCTTGAGGAAACTCAA+TGG | - | Chr8:23343609-23343628 | MsG0880043340.01.T01:CDS | 35.0% | |
| TGAGATTAATTTACGTCCAC+AGG | - | Chr8:23343426-23343445 | MsG0880043340.01.T01:intron | 35.0% | |
| TTCCTCAAGAGTTACTTCTA+AGG | + | Chr8:23343603-23343622 | None:intergenic | 35.0% | |
| ! | AATGAATTCTGCCATTGGTT+GGG | - | Chr8:23343678-23343697 | MsG0880043340.01.T01:intron | 35.0% |
| ! | CGACCCACACATTAAAATTT+TGG | - | Chr8:23343273-23343292 | MsG0880043340.01.T01:CDS | 35.0% |
| ! | CTTTGTCTCTACAAAGGTAT+TGG | - | Chr8:23343319-23343338 | MsG0880043340.01.T01:CDS | 35.0% |
| !! | GAGCCCAAAATTTTAATGTG+TGG | + | Chr8:23343280-23343299 | None:intergenic | 35.0% |
| AATTTACGTCCACAGGGATT+TGG | - | Chr8:23343433-23343452 | MsG0880043340.01.T01:intron | 40.0% | |
| ACAAGTGAACATGCATTTGG+GGG | - | Chr8:23343788-23343807 | MsG0880043340.01.T01:CDS | 40.0% | |
| AGAGATGTATGACTCCTTCT+GGG | - | Chr8:23343567-23343586 | MsG0880043340.01.T01:CDS | 40.0% | |
| AGCCTTAGAAGTAACTCTTG+AGG | - | Chr8:23343598-23343617 | MsG0880043340.01.T01:CDS | 40.0% | |
| ATGCACAATGATTCGCGATA+TGG | + | Chr8:23343191-23343210 | None:intergenic | 40.0% | |
| ATTGTGGAACCCTTGTACAA+AGG | - | Chr8:23343360-23343379 | MsG0880043340.01.T01:CDS | 40.0% | |
| ATTTACGTCCACAGGGATTT+GGG | - | Chr8:23343434-23343453 | MsG0880043340.01.T01:intron | 40.0% | |
| CCAATTTCCATCGAACTCTA+AGG | + | Chr8:23343509-23343528 | None:intergenic | 40.0% | |
| CCTTAGAGTTCGATGGAAAT+TGG | - | Chr8:23343506-23343525 | MsG0880043340.01.T01:intron | 40.0% | |
| CTCTTTATTCCAACCGCAAT+AGG | + | Chr8:23343948-23343967 | None:intergenic | 40.0% | |
| GAACTATCTCGCAAAGAAAC+AGG | + | Chr8:23343645-23343664 | None:intergenic | 40.0% | |
| GAATGAATTCTGCCATTGGT+TGG | - | Chr8:23343677-23343696 | MsG0880043340.01.T01:intron | 40.0% | |
| GTTTCTTTGCGAGATAGTTC+TGG | - | Chr8:23343645-23343664 | MsG0880043340.01.T01:intron | 40.0% | |
| TAGAGATGTATGACTCCTTC+TGG | - | Chr8:23343566-23343585 | MsG0880043340.01.T01:CDS | 40.0% | |
| TTTATGCATCCTATTGCGGT+TGG | - | Chr8:23343936-23343955 | MsG0880043340.01.T01:CDS | 40.0% | |
| TTTGGGTGAACTCAATGTCA+AGG | - | Chr8:23343875-23343894 | MsG0880043340.01.T01:CDS | 40.0% | |
| TTTGTGTCCTTTGCTTTAGC+AGG | + | Chr8:23343163-23343182 | None:intergenic | 40.0% | |
| ! | CATGGACTAAACTCTTGTGT+TGG | - | Chr8:23343901-23343920 | MsG0880043340.01.T01:CDS | 40.0% |
| !! | AAGAGTGCCATTAACACTAG+CGG | + | Chr8:23343302-23343321 | None:intergenic | 40.0% |
| AAGGCTGTATATCTCCCAGA+AGG | + | Chr8:23343584-23343603 | None:intergenic | 45.0% | |
| ACATCTCTACTACTGCCTCA+TGG | + | Chr8:23343555-23343574 | None:intergenic | 45.0% | |
| CAATATCCTCGTAGGCTTGA+AGG | + | Chr8:23343408-23343427 | None:intergenic | 45.0% | |
| CGATATCCCTTAGAGTTCGA+TGG | - | Chr8:23343499-23343518 | MsG0880043340.01.T01:intron | 45.0% | |
| GGCACTCTTTGTCTCTACAA+AGG | - | Chr8:23343313-23343332 | MsG0880043340.01.T01:CDS | 45.0% | |
| GTTCGATGGAAATTGGGAGA+TGG | - | Chr8:23343513-23343532 | MsG0880043340.01.T01:intron | 45.0% | |
| TGCATTATGCCTGAGTGAGA+GGG | + | Chr8:23343765-23343784 | None:intergenic | 45.0% | |
| TGTGTCTCCTGCTAAAGCAA+AGG | - | Chr8:23343153-23343172 | MsG0880043340.01.T01:CDS | 45.0% | |
| TTGCATTATGCCTGAGTGAG+AGG | + | Chr8:23343766-23343785 | None:intergenic | 45.0% | |
| GTCGTCGTTCTCGTCATGTT+TGG | + | Chr8:23343129-23343148 | None:intergenic | 50.0% | |
| TCATAGCCTTCAAGCCTACG+AGG | - | Chr8:23343399-23343418 | MsG0880043340.01.T01:CDS | 50.0% | |
| TCGTAGGCTTGAAGGCTATG+AGG | + | Chr8:23343400-23343419 | None:intergenic | 50.0% | |
| TTGGGCTCCGCTAGTGTTAA+TGG | - | Chr8:23343292-23343311 | MsG0880043340.01.T01:CDS | 50.0% | |
| ! | CACTTGTTGAGCCCAACCAA+TGG | + | Chr8:23343692-23343711 | None:intergenic | 50.0% |
| ACAACCTTGCCCTCTCACTC+AGG | - | Chr8:23343753-23343772 | MsG0880043340.01.T01:intron | 55.0% | |
| TATGCCTGAGTGAGAGGGCA+AGG | + | Chr8:23343760-23343779 | None:intergenic | 55.0% | |
| TGGTCGTACCCAAATCCCTG+TGG | + | Chr8:23343445-23343464 | None:intergenic | 55.0% | |
| TTAATGTGTGGGTCGCCCTG+TGG | + | Chr8:23343268-23343287 | None:intergenic | 55.0% | |
| ! | ATTGGCGCCTCCTTTTCCAC+AGG | - | Chr8:23343249-23343268 | MsG0880043340.01.T01:CDS | 55.0% |
| ! | TTGGCGCCTCCTTTTCCACA+GGG | - | Chr8:23343250-23343269 | MsG0880043340.01.T01:CDS | 55.0% |
| TGTGGGTCGCCCTGTGGAAA+AGG | + | Chr8:23343262-23343281 | None:intergenic | 60.0% | |
| GGGTCGCCCTGTGGAAAAGG+AGG | + | Chr8:23343259-23343278 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 23343098 | 23344001 | 23343098 | ID=MsG0880043340.01;Name=MsG0880043340.01 |
| Chr8 | mRNA | 23343098 | 23344001 | 23343098 | ID=MsG0880043340.01.T01;Parent=MsG0880043340.01;Name=MsG0880043340.01.T01;_AED=0.20;_eAED=0.25;_QI=0|0|0|1|1|1|3|0|233 |
| Chr8 | exon | 23343765 | 23344001 | 23343765 | ID=MsG0880043340.01.T01:exon:8548;Parent=MsG0880043340.01.T01 |
| Chr8 | exon | 23343527 | 23343651 | 23343527 | ID=MsG0880043340.01.T01:exon:8547;Parent=MsG0880043340.01.T01 |
| Chr8 | exon | 23343098 | 23343437 | 23343098 | ID=MsG0880043340.01.T01:exon:8546;Parent=MsG0880043340.01.T01 |
| Chr8 | CDS | 23343765 | 23344001 | 23343765 | ID=MsG0880043340.01.T01:cds;Parent=MsG0880043340.01.T01 |
| Chr8 | CDS | 23343527 | 23343651 | 23343527 | ID=MsG0880043340.01.T01:cds;Parent=MsG0880043340.01.T01 |
| Chr8 | CDS | 23343098 | 23343437 | 23343098 | ID=MsG0880043340.01.T01:cds;Parent=MsG0880043340.01.T01 |
| Gene Sequence |
| Protein sequence |
