AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028859.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028859.01.T01 MTR_5g076490 61.088 239 87 6 3 237 101 337 1.12e-86 260
MsG0580028859.01.T01 MTR_5g064700 55.833 240 88 9 6 236 138 368 1.15e-76 236
MsG0580028859.01.T01 MTR_6g086825 53.333 240 97 6 4 235 227 459 1.10e-75 236
MsG0580028859.01.T01 MTR_6g079810 52.066 242 108 5 1 237 226 464 9.58e-75 234
MsG0580028859.01.T01 MTR_5g097680 54.237 236 98 7 6 237 199 428 1.04e-74 233
MsG0580028859.01.T01 MTR_0134s0060 51.653 242 106 5 1 234 171 409 2.06e-73 229
MsG0580028859.01.T01 MTR_6g079770 53.252 246 97 8 1 234 176 415 1.44e-72 227
MsG0580028859.01.T01 MTR_6g461660 53.814 236 97 6 3 237 177 401 1.09e-70 221
MsG0580028859.01.T01 MTR_4g028510 51.271 236 101 6 4 236 178 402 1.22e-70 223
MsG0580028859.01.T01 MTR_6g080680 51.528 229 90 4 3 230 180 388 3.54e-70 220
MsG0580028859.01.T01 MTR_6g079790 50.413 242 107 5 4 237 74 310 4.67e-70 217
MsG0580028859.01.T01 MTR_6g090250 51.240 242 99 6 4 230 180 417 8.13e-70 220
MsG0580028859.01.T01 MTR_0054s0090 53.419 234 102 5 4 235 177 405 3.50e-69 218
MsG0580028859.01.T01 MTR_0054s0100 53.846 234 101 5 4 235 179 407 1.07e-68 217
MsG0580028859.01.T01 MTR_6g478230 48.583 247 89 5 4 235 183 406 2.41e-67 213
MsG0580028859.01.T01 MTR_6g090180 49.138 232 112 4 1 230 204 431 1.63e-66 212
MsG0580028859.01.T01 MTR_4g130330 51.046 239 97 7 5 236 166 391 2.96e-65 207
MsG0580028859.01.T01 MTR_6g078010 49.569 232 91 5 1 230 121 328 6.54e-65 205
MsG0580028859.01.T01 MTR_4g028680 49.367 237 106 6 4 237 176 401 1.04e-64 206
MsG0580028859.01.T01 MTR_4g028660 50.218 229 101 5 4 230 175 392 2.84e-64 205
MsG0580028859.01.T01 MTR_4g027450 50.218 229 101 5 4 230 175 392 2.84e-64 205
MsG0580028859.01.T01 MTR_0129s0070 48.945 237 110 6 4 236 167 396 2.39e-63 203
MsG0580028859.01.T01 MTR_6g090260 54.545 187 80 3 47 230 73 257 3.18e-63 198
MsG0580028859.01.T01 MTR_0129s0120 49.576 236 108 7 4 235 167 395 3.52e-63 202
MsG0580028859.01.T01 MTR_2g021800 46.186 236 114 6 4 230 178 409 3.65e-60 195
MsG0580028859.01.T01 MTR_2g022000 47.881 236 106 7 4 228 177 406 3.69e-60 195
MsG0580028859.01.T01 MTR_5g097330 49.787 235 105 8 4 235 178 402 5.17e-60 194
MsG0580028859.01.T01 MTR_8g063440 45.798 238 111 6 4 237 161 384 2.29e-59 192
MsG0580028859.01.T01 MTR_2g021770 45.643 241 118 6 6 237 172 408 2.45e-59 192
MsG0580028859.01.T01 MTR_2g021950 49.356 233 98 8 5 230 171 390 4.45e-59 191
MsG0580028859.01.T01 MTR_5g097220 47.154 246 108 6 4 235 170 407 7.65e-59 191
MsG0580028859.01.T01 MTR_4g007940 44.578 249 111 9 3 237 107 342 3.76e-58 187
MsG0580028859.01.T01 MTR_2g021920 47.899 238 104 10 5 230 37 266 1.10e-57 184
MsG0580028859.01.T01 MTR_4g028750 48.598 214 95 5 4 215 176 376 1.12e-57 188
MsG0580028859.01.T01 MTR_2g038680 45.749 247 109 8 4 235 174 410 4.92e-57 187
MsG0580028859.01.T01 MTR_0129s0050 44.444 252 120 6 1 236 161 408 1.37e-56 186
MsG0580028859.01.T01 MTR_5g037680 46.610 236 99 7 5 235 171 384 4.45e-55 182
MsG0580028859.01.T01 MTR_6g004450 44.726 237 112 8 3 235 47 268 1.09e-54 176
MsG0580028859.01.T01 MTR_5g092850 44.770 239 110 8 4 230 167 395 2.28e-54 180
MsG0580028859.01.T01 MTR_8g464770 43.404 235 106 7 1 230 161 373 2.45e-54 179
MsG0580028859.01.T01 MTR_6g087620 46.610 236 73 8 4 227 85 279 3.23e-54 176
MsG0580028859.01.T01 MTR_4g102410 45.148 237 119 8 4 234 217 448 8.08e-53 177
MsG0580028859.01.T01 MTR_5g059430 44.872 234 116 8 6 234 199 424 2.34e-52 175
MsG0580028859.01.T01 MTR_5g069390 42.424 231 123 4 6 234 193 415 3.17e-52 176
MsG0580028859.01.T01 MTR_2g104340 44.681 235 119 6 4 230 158 389 1.71e-51 172
MsG0580028859.01.T01 MTR_5g023970 48.718 195 92 4 44 235 6 195 8.07e-51 164
MsG0580028859.01.T01 MTR_2g104280 44.490 245 124 7 2 237 165 406 1.81e-50 169
MsG0580028859.01.T01 MTR_5g086590 47.783 203 88 7 8 209 46 231 2.59e-50 164
MsG0580028859.01.T01 MTR_4g117550 43.478 230 94 7 4 230 170 366 2.67e-50 168
MsG0580028859.01.T01 MTR_4g014370 41.975 243 108 7 3 235 189 408 2.84e-50 169
MsG0580028859.01.T01 MTR_8g467670 41.379 232 113 6 4 234 167 376 3.33e-50 169
MsG0580028859.01.T01 MTR_8g041270 44.444 243 123 7 3 236 167 406 6.15e-50 168
MsG0580028859.01.T01 MTR_5g097850 50.000 188 82 5 54 235 63 244 9.21e-50 163
MsG0580028859.01.T01 MTR_5g091140 45.872 218 112 5 4 216 180 396 2.11e-49 167
MsG0580028859.01.T01 MTR_5g092860 43.891 221 107 5 3 215 140 351 2.39e-49 166
MsG0580028859.01.T01 MTR_5g096910 43.404 235 107 8 5 235 180 392 1.24e-48 164
MsG0580028859.01.T01 MTR_3g018750 41.600 250 119 9 4 236 2 241 1.36e-48 160
MsG0580028859.01.T01 MTR_5g096630 41.463 246 126 8 4 236 174 414 1.80e-48 164
MsG0580028859.01.T01 MTR_5g074800 44.068 236 111 9 4 229 112 336 9.01e-48 161
MsG0580028859.01.T01 MTR_0831s0010 41.841 239 124 7 3 237 195 422 1.13e-47 162
MsG0580028859.01.T01 MTR_5g097350 44.737 228 103 9 4 230 175 380 1.22e-47 162
MsG0580028859.01.T01 MTR_4g055820 47.208 197 94 4 4 193 165 358 1.44e-47 160
MsG0580028859.01.T01 MTR_2g034700 42.609 230 101 7 4 230 168 369 4.73e-47 160
MsG0580028859.01.T01 MTR_2g066200 40.664 241 122 8 3 237 164 389 5.54e-47 160
MsG0580028859.01.T01 MTR_5g074850 45.022 231 102 9 4 220 188 407 7.06e-47 166
MsG0580028859.01.T01 MTR_8g012090 44.444 207 75 4 1 206 167 334 2.46e-46 157
MsG0580028859.01.T01 MTR_2g066170 40.833 240 123 7 3 237 162 387 4.73e-46 157
MsG0580028859.01.T01 MTR_5g022850 40.816 245 125 7 3 237 120 354 7.59e-46 156
MsG0580028859.01.T01 MTR_5g075370 44.583 240 104 11 4 227 164 390 1.55e-45 162
MsG0580028859.01.T01 MTR_8g064890 41.350 237 117 7 4 236 170 388 4.87e-45 155
MsG0580028859.01.T01 MTR_3g011120 41.150 226 111 7 4 227 165 370 7.20e-45 154
MsG0580028859.01.T01 MTR_7g023800 51.176 170 78 3 60 228 137 302 8.68e-45 152
MsG0580028859.01.T01 MTR_1g007450 43.379 219 116 6 2 216 161 375 1.35e-44 154
MsG0580028859.01.T01 MTR_7g111700 43.038 237 98 8 3 237 165 366 1.40e-44 153
MsG0580028859.01.T01 MTR_6g079730 54.167 144 63 2 88 230 2 143 1.57e-44 146
MsG0580028859.01.T01 MTR_5g043605 39.574 235 118 5 4 235 125 338 8.99e-44 151
MsG0580028859.01.T01 MTR_4g014370 40.260 231 114 6 15 235 120 336 1.79e-43 149
MsG0580028859.01.T01 MTR_1g007410 42.918 233 115 8 5 229 176 398 4.38e-43 150
MsG0580028859.01.T01 MTR_7g069550 41.129 248 99 9 4 229 169 391 3.97e-42 147
MsG0580028859.01.T01 MTR_7g017130 39.662 237 128 7 5 237 173 398 1.76e-41 146
MsG0580028859.01.T01 MTR_8g046310 39.056 233 108 6 5 230 166 371 3.18e-41 145
MsG0580028859.01.T01 MTR_2g065860 39.076 238 122 6 4 237 171 389 3.41e-41 145
MsG0580028859.01.T01 MTR_7g017040 40.329 243 124 6 5 237 168 399 7.44e-41 144
MsG0580028859.01.T01 MTR_7g079640 40.909 220 99 7 1 215 161 354 5.11e-40 142
MsG0580028859.01.T01 MTR_5g068490 39.207 227 109 7 5 230 72 270 1.11e-39 138
MsG0580028859.01.T01 MTR_5g066420 50.993 151 66 5 81 226 2 149 1.65e-39 134
MsG0580028859.01.T01 MTR_6g009350 41.000 200 102 6 5 200 8 195 2.01e-39 135
MsG0580028859.01.T01 MTR_2g065840 40.417 240 116 8 4 237 172 390 2.24e-39 140
MsG0580028859.01.T01 MTR_3g030620 46.341 164 78 5 77 234 20 179 1.05e-38 132
MsG0580028859.01.T01 MTR_7g017170 38.153 249 127 8 5 237 173 410 1.33e-38 138
MsG0580028859.01.T01 MTR_1g098180 38.683 243 109 9 4 235 151 364 9.71e-38 135
MsG0580028859.01.T01 MTR_2g064950 40.625 224 115 8 4 215 152 369 1.04e-37 136
MsG0580028859.01.T01 MTR_1g050312 37.931 232 98 7 4 226 90 284 1.52e-37 133
MsG0580028859.01.T01 MTR_8g033140 37.743 257 108 10 6 230 175 411 2.84e-37 135
MsG0580028859.01.T01 MTR_8g036970 45.977 174 79 5 48 219 146 306 3.49e-37 134
MsG0580028859.01.T01 MTR_8g039500 39.614 207 105 7 4 206 156 346 6.67e-37 132
MsG0580028859.01.T01 MTR_4g016000 41.753 194 81 8 3 191 27 193 1.40e-36 128
MsG0580028859.01.T01 MTR_1g007430 42.424 198 93 5 1 195 144 323 1.57e-36 131
MsG0580028859.01.T01 MTR_8g046200 38.224 259 109 11 5 229 173 414 1.01e-35 131
MsG0580028859.01.T01 MTR_2g066150 37.500 240 110 8 4 237 156 361 1.95e-35 129
MsG0580028859.01.T01 MTR_8g018110 36.842 247 111 7 6 230 167 390 2.20e-35 130
MsG0580028859.01.T01 MTR_5g024260 38.393 224 110 8 4 215 177 384 6.02e-35 129
MsG0580028859.01.T01 MTR_1g053510 37.295 244 122 6 5 230 169 399 7.27e-35 129
MsG0580028859.01.T01 MTR_8g013000 43.434 198 99 5 3 195 163 352 1.47e-34 128
MsG0580028859.01.T01 MTR_8g035690 35.659 258 115 9 5 230 58 296 1.89e-34 125
MsG0580028859.01.T01 MTR_5g094350 51.200 125 51 4 6 129 163 278 2.19e-34 124
MsG0580028859.01.T01 MTR_8g033000 43.158 190 91 6 49 230 176 356 5.80e-34 125
MsG0580028859.01.T01 MTR_5g096920 46.053 152 72 5 81 230 2 145 1.31e-33 119
MsG0580028859.01.T01 MTR_8g063330 40.206 194 99 7 4 192 167 348 1.42e-33 126
MsG0580028859.01.T01 MTR_8g063350 35.622 233 118 7 4 228 129 337 1.58e-33 124
MsG0580028859.01.T01 MTR_5g072060 40.367 218 95 7 4 212 156 347 2.32e-33 127
MsG0580028859.01.T01 MTR_8g033110 35.060 251 127 8 6 230 168 408 5.47e-33 124
MsG0580028859.01.T01 MTR_8g046220 33.852 257 122 8 5 230 160 399 1.15e-32 122
MsG0580028859.01.T01 MTR_8g032980 34.944 269 124 9 5 235 164 419 2.96e-32 122
MsG0580028859.01.T01 MTR_8g063370 34.440 241 130 7 4 237 173 392 3.50e-32 121
MsG0580028859.01.T01 MTR_7g019250 38.028 213 108 6 4 214 223 413 8.09e-32 121
MsG0580028859.01.T01 MTR_5g097540 42.857 154 74 5 44 195 92 233 9.75e-32 118
MsG0580028859.01.T01 MTR_1g115205 64.286 84 28 2 6 89 157 238 1.01e-31 117
MsG0580028859.01.T01 MTR_8g033090 35.294 255 118 10 6 230 168 405 3.18e-31 119
MsG0580028859.01.T01 MTR_7g017120 40.594 202 108 6 41 237 73 267 2.79e-30 113
MsG0580028859.01.T01 MTR_7g017150 40.777 206 108 7 39 237 70 268 8.28e-30 112
MsG0580028859.01.T01 MTR_8g063310 32.627 236 136 7 4 228 165 388 1.83e-29 114
MsG0580028859.01.T01 MTR_5g097660 51.282 117 52 3 120 233 3 117 2.00e-29 107
MsG0580028859.01.T01 MTR_5g098950 39.378 193 78 6 4 195 120 274 3.97e-29 110
MsG0580028859.01.T01 MTR_8g064790 34.468 235 89 7 4 236 166 337 3.00e-28 109
MsG0580028859.01.T01 MTR_7g104710 51.282 117 49 3 43 153 172 286 9.96e-28 108
MsG0580028859.01.T01 MTR_7g016930 41.765 170 87 6 5 174 152 309 6.01e-27 106
MsG0580028859.01.T01 MTR_5g036250 55.789 95 40 2 136 229 10 103 2.27e-25 98.6
MsG0580028859.01.T01 MTR_5g096050 51.351 111 41 3 81 181 2 109 1.75e-24 94.4
MsG0580028859.01.T01 MTR_7g101200 42.105 152 68 8 48 194 92 228 7.86e-24 95.9
MsG0580028859.01.T01 MTR_4g094400 48.182 110 39 4 76 171 6 111 3.42e-22 89.0
MsG0580028859.01.T01 MTR_2g022020 48.485 99 48 2 133 230 17 113 7.26e-22 87.4
MsG0580028859.01.T01 MTR_5g086780 49.074 108 52 3 107 213 123 228 8.78e-21 87.8
MsG0580028859.01.T01 MTR_2g104260 44.348 115 56 4 3 112 166 277 3.36e-20 87.0
MsG0580028859.01.T01 MTR_5g096900 38.994 159 74 5 5 161 176 313 1.70e-18 83.2
MsG0580028859.01.T01 MTR_1g050308 45.370 108 52 4 132 235 242 346 1.16e-17 80.9
MsG0580028859.01.T01 MTR_1g050305 46.067 89 39 2 131 215 20 103 5.41e-15 70.1
MsG0580028859.01.T01 MTR_3g097190 59.259 54 21 1 158 210 28 81 1.80e-13 67.0
MsG0580028859.01.T01 MTR_5g091150 40.000 100 40 5 49 143 99 183 3.41e-13 66.6
MsG0580028859.01.T01 MTR_0064s0160 26.033 242 151 9 1 230 191 416 3.60e-12 65.5
MsG0580028859.01.T01 MTR_3g047540 43.056 72 36 2 46 117 3 69 4.54e-12 60.8
MsG0580028859.01.T01 MTR_6g070880 50.000 68 32 1 4 69 192 259 1.74e-11 62.8
MsG0580028859.01.T01 MTR_6g071420 50.000 68 32 1 4 69 192 259 1.74e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGAGGAGCTTGGTGTTAA+AGG 0.258013 5:+87700091 MsG0580028859.01.T01:CDS
AGTACAGTCATCTATGTATA+AGG 0.260188 5:-87699813 None:intergenic
ATATATCTTTACAACCCTTA+TGG 0.268679 5:+87699591 MsG0580028859.01.T01:CDS
ATTGTTATGCCTTCAACTTC+TGG 0.270697 5:+87699656 MsG0580028859.01.T01:CDS
ATGGATAATCTTCATGGATT+TGG 0.274740 5:+87699467 MsG0580028859.01.T01:CDS
AGACACTTTGCAGTGTTAAA+TGG 0.288347 5:+87699860 MsG0580028859.01.T01:CDS
TGGACCAAGCTCTTCATTCT+TGG 0.289731 5:+87699965 MsG0580028859.01.T01:CDS
CACTCAATGGATAATCTTCA+TGG 0.295090 5:+87699461 None:intergenic
ATTGAGTATCCTATTGGATT+TGG 0.303169 5:+87700001 MsG0580028859.01.T01:CDS
CCTTGCATTGAGTATCCTAT+TGG 0.321223 5:+87699995 MsG0580028859.01.T01:CDS
ACATGAATCTAAAGCAGATT+TGG 0.339158 5:+87699745 MsG0580028859.01.T01:CDS
CACCAAGCTCCTCGATCATC+AGG 0.339562 5:-87700084 None:intergenic
TATATCTTTACAACCCTTAT+GGG 0.343479 5:+87699592 MsG0580028859.01.T01:CDS
TTCTCCAAGAGTTACTTCTA+AGG 0.344816 5:-87699625 None:intergenic
AAGGAAAACCTTCCAATTAG+TGG 0.369534 5:+87700145 MsG0580028859.01.T01:CDS
AGGGTAAAATACTCTTCATT+AGG 0.379167 5:+87700026 MsG0580028859.01.T01:CDS
GGACCAAGCTCTTCATTCTT+GGG 0.390402 5:+87699966 MsG0580028859.01.T01:CDS
ATGATATGTGAACAAGGAAA+TGG 0.410899 5:-87699885 None:intergenic
GTCATCTATGTATAAGGGTA+TGG 0.415184 5:-87699807 None:intergenic
TTACCCTTTCCAAATCCAAT+AGG 0.417085 5:-87700010 None:intergenic
ATGTGGACGATTATTGTTCA+TGG 0.434678 5:+87699837 MsG0580028859.01.T01:CDS
AAGGCTATATATCTCCCATA+AGG 0.441647 5:-87699606 None:intergenic
TTCTCCGTTGGTAGTTTACA+AGG 0.446662 5:+87700126 MsG0580028859.01.T01:CDS
GTTCACATATCATGAACATA+TGG 0.464934 5:+87699895 MsG0580028859.01.T01:CDS
GTACAGTCATCTATGTATAA+GGG 0.469713 5:-87699812 None:intergenic
GACAGGAGGTTATGTACCAT+TGG 0.480131 5:+87699562 MsG0580028859.01.T01:CDS
CCACAGTTGTTTCGAATGAC+AGG 0.481545 5:+87699545 MsG0580028859.01.T01:CDS
ATAGCCTTAGAAGTAACTCT+TGG 0.499919 5:+87699621 MsG0580028859.01.T01:CDS
TATCCTATTGGATTTGGAAA+GGG 0.501698 5:+87700007 MsG0580028859.01.T01:CDS
ACACAGATGGAGTGTGTCAT+TGG 0.514497 5:+87699702 MsG0580028859.01.T01:CDS
AATTAAGTGTGAAAGAATCA+TGG 0.524313 5:+87699945 MsG0580028859.01.T01:CDS
ACAGGAGGTTATGTACCATT+GGG 0.533649 5:+87699563 MsG0580028859.01.T01:CDS
CTGTCATTCGAAACAACTGT+GGG 0.547810 5:-87699544 None:intergenic
AGGCTATATATCTCCCATAA+GGG 0.549755 5:-87699605 None:intergenic
AGACGGTCGTATTTCTCCGT+TGG 0.555669 5:+87700114 MsG0580028859.01.T01:CDS
TCATCTATGTATAAGGGTAT+GGG 0.557519 5:-87699806 None:intergenic
GTATCCTATTGGATTTGGAA+AGG 0.561435 5:+87700006 MsG0580028859.01.T01:CDS
CGAACTAGAGCGTACACAGA+TGG 0.562216 5:+87699689 MsG0580028859.01.T01:CDS
CGGCCCAAGAATGAAGAGCT+TGG 0.562731 5:-87699969 None:intergenic
TGTGTACGCTCTAGTTCGAT+TGG 0.565342 5:-87699684 None:intergenic
TATGTATAAGGGTATGGGTG+TGG 0.566213 5:-87699801 None:intergenic
GGAAAGACAAAGAAGTAGCA+TGG 0.572780 5:+87700047 MsG0580028859.01.T01:CDS
TTGGTAGTACCAGAAGTTGA+AGG 0.575267 5:-87699665 None:intergenic
CCAATAGGATACTCAATGCA+AGG 0.592672 5:-87699995 None:intergenic
CCTGTCATTCGAAACAACTG+TGG 0.605762 5:-87699545 None:intergenic
GGATACTCAATGCAAGGCAA+CGG 0.618747 5:-87699989 None:intergenic
ACCCTGATGATCGAGGAGCT+TGG 0.620783 5:+87700082 MsG0580028859.01.T01:CDS
CTTAAATACCCTGATGATCG+AGG 0.620967 5:+87700075 MsG0580028859.01.T01:CDS
ACCAAGCTCCTCGATCATCA+GGG 0.622874 5:-87700083 None:intergenic
CAGATGGAGTGTGTCATTGG+TGG 0.627630 5:+87699705 MsG0580028859.01.T01:CDS
CAGTTGTTTCGAATGACAGG+AGG 0.634323 5:+87699548 MsG0580028859.01.T01:CDS
TCTTATAGTCATTTGTAACA+CGG 0.640425 5:-87699496 None:intergenic
GAGCTTGGTGTTAAAGGAGA+CGG 0.643381 5:+87700097 MsG0580028859.01.T01:CDS
ATGTTCATGATATGTGAACA+AGG 0.648039 5:-87699891 None:intergenic
CATAGATGACTGTACTGATG+TGG 0.657098 5:+87699820 MsG0580028859.01.T01:CDS
AAAGATATATGATCACCCAA+TGG 0.676378 5:-87699578 None:intergenic
TGTCATTCGAAACAACTGTG+GGG 0.767226 5:-87699543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTAAAATATCAATTTT+GGG + Chr5:87699920-87699939 MsG0580028859.01.T01:CDS 10.0%
!!! TACTTTTAAAATATCAATTT+TGG + Chr5:87699919-87699938 MsG0580028859.01.T01:CDS 10.0%
!!! TATTTTTTGATTCCACTAAT+TGG - Chr5:87700160-87700179 None:intergenic 20.0%
! AATTAAGTGTGAAAGAATCA+TGG + Chr5:87699945-87699964 MsG0580028859.01.T01:CDS 25.0%
! ATATATCTTTACAACCCTTA+TGG + Chr5:87699591-87699610 MsG0580028859.01.T01:CDS 25.0%
! TATATCTTTACAACCCTTAT+GGG + Chr5:87699592-87699611 MsG0580028859.01.T01:CDS 25.0%
! TCTTATAGTCATTTGTAACA+CGG - Chr5:87699499-87699518 None:intergenic 25.0%
AAAGATATATGATCACCCAA+TGG - Chr5:87699581-87699600 None:intergenic 30.0%
AGGGTAAAATACTCTTCATT+AGG + Chr5:87700026-87700045 MsG0580028859.01.T01:CDS 30.0%
AGTACAGTCATCTATGTATA+AGG - Chr5:87699816-87699835 None:intergenic 30.0%
ATGATATGTGAACAAGGAAA+TGG - Chr5:87699888-87699907 None:intergenic 30.0%
ATGGATAATCTTCATGGATT+TGG + Chr5:87699467-87699486 MsG0580028859.01.T01:CDS 30.0%
ATGTTCATGATATGTGAACA+AGG - Chr5:87699894-87699913 None:intergenic 30.0%
ATTGAGTATCCTATTGGATT+TGG + Chr5:87700001-87700020 MsG0580028859.01.T01:CDS 30.0%
GTACAGTCATCTATGTATAA+GGG - Chr5:87699815-87699834 None:intergenic 30.0%
GTTCACATATCATGAACATA+TGG + Chr5:87699895-87699914 MsG0580028859.01.T01:CDS 30.0%
TATCCTATTGGATTTGGAAA+GGG + Chr5:87700007-87700026 MsG0580028859.01.T01:CDS 30.0%
! ACATGAATCTAAAGCAGATT+TGG + Chr5:87699745-87699764 MsG0580028859.01.T01:CDS 30.0%
! TCATCTATGTATAAGGGTAT+GGG - Chr5:87699809-87699828 None:intergenic 30.0%
! TTTTCCTTGTAAACTACCAA+CGG - Chr5:87700133-87700152 None:intergenic 30.0%
!! TTTTGATTCCACTAATTGGA+AGG - Chr5:87700156-87700175 None:intergenic 30.0%
AAGGAAAACCTTCCAATTAG+TGG + Chr5:87700145-87700164 MsG0580028859.01.T01:CDS 35.0%
AAGGCTATATATCTCCCATA+AGG - Chr5:87699609-87699628 None:intergenic 35.0%
AGACACTTTGCAGTGTTAAA+TGG + Chr5:87699860-87699879 MsG0580028859.01.T01:CDS 35.0%
AGGCTATATATCTCCCATAA+GGG - Chr5:87699608-87699627 None:intergenic 35.0%
ATGTGGACGATTATTGTTCA+TGG + Chr5:87699837-87699856 MsG0580028859.01.T01:CDS 35.0%
ATTGTTATGCCTTCAACTTC+TGG + Chr5:87699656-87699675 MsG0580028859.01.T01:CDS 35.0%
GTATCCTATTGGATTTGGAA+AGG + Chr5:87700006-87700025 MsG0580028859.01.T01:CDS 35.0%
GTCATCTATGTATAAGGGTA+TGG - Chr5:87699810-87699829 None:intergenic 35.0%
TTACCCTTTCCAAATCCAAT+AGG - Chr5:87700013-87700032 None:intergenic 35.0%
TTCTCCAAGAGTTACTTCTA+AGG - Chr5:87699628-87699647 None:intergenic 35.0%
! ATAGCCTTAGAAGTAACTCT+TGG + Chr5:87699621-87699640 MsG0580028859.01.T01:CDS 35.0%
ACAGGAGGTTATGTACCATT+GGG + Chr5:87699563-87699582 MsG0580028859.01.T01:CDS 40.0%
CCAATAGGATACTCAATGCA+AGG - Chr5:87699998-87700017 None:intergenic 40.0%
CCTTGCATTGAGTATCCTAT+TGG + Chr5:87699995-87700014 MsG0580028859.01.T01:CDS 40.0%
CTGTCATTCGAAACAACTGT+GGG - Chr5:87699547-87699566 None:intergenic 40.0%
CTTAAATACCCTGATGATCG+AGG + Chr5:87700075-87700094 MsG0580028859.01.T01:CDS 40.0%
GGAAAGACAAAGAAGTAGCA+TGG + Chr5:87700047-87700066 MsG0580028859.01.T01:CDS 40.0%
TGTCATTCGAAACAACTGTG+GGG - Chr5:87699546-87699565 None:intergenic 40.0%
! CATAGATGACTGTACTGATG+TGG + Chr5:87699820-87699839 MsG0580028859.01.T01:CDS 40.0%
! TATGTATAAGGGTATGGGTG+TGG - Chr5:87699804-87699823 None:intergenic 40.0%
! TTGGTAGTACCAGAAGTTGA+AGG - Chr5:87699668-87699687 None:intergenic 40.0%
!! TTCTCCGTTGGTAGTTTACA+AGG + Chr5:87700126-87700145 MsG0580028859.01.T01:CDS 40.0%
ACACAGATGGAGTGTGTCAT+TGG + Chr5:87699702-87699721 MsG0580028859.01.T01:CDS 45.0%
CCTGTCATTCGAAACAACTG+TGG - Chr5:87699548-87699567 None:intergenic 45.0%
GACAGGAGGTTATGTACCAT+TGG + Chr5:87699562-87699581 MsG0580028859.01.T01:CDS 45.0%
GGACCAAGCTCTTCATTCTT+GGG + Chr5:87699966-87699985 MsG0580028859.01.T01:CDS 45.0%
GGATACTCAATGCAAGGCAA+CGG - Chr5:87699992-87700011 None:intergenic 45.0%
TGGACCAAGCTCTTCATTCT+TGG + Chr5:87699965-87699984 MsG0580028859.01.T01:CDS 45.0%
! CAGTTGTTTCGAATGACAGG+AGG + Chr5:87699548-87699567 MsG0580028859.01.T01:CDS 45.0%
! CCACAGTTGTTTCGAATGAC+AGG + Chr5:87699545-87699564 MsG0580028859.01.T01:CDS 45.0%
! TGTGTACGCTCTAGTTCGAT+TGG - Chr5:87699687-87699706 None:intergenic 45.0%
!! ATCGAGGAGCTTGGTGTTAA+AGG + Chr5:87700091-87700110 MsG0580028859.01.T01:CDS 45.0%
!! GAGCTTGGTGTTAAAGGAGA+CGG + Chr5:87700097-87700116 MsG0580028859.01.T01:CDS 45.0%
ACCAAGCTCCTCGATCATCA+GGG - Chr5:87700086-87700105 None:intergenic 50.0%
AGACGGTCGTATTTCTCCGT+TGG + Chr5:87700114-87700133 MsG0580028859.01.T01:CDS 50.0%
CGAACTAGAGCGTACACAGA+TGG + Chr5:87699689-87699708 MsG0580028859.01.T01:CDS 50.0%
! CAGATGGAGTGTGTCATTGG+TGG + Chr5:87699705-87699724 MsG0580028859.01.T01:CDS 50.0%
ACCCTGATGATCGAGGAGCT+TGG + Chr5:87700082-87700101 MsG0580028859.01.T01:CDS 55.0%
CACCAAGCTCCTCGATCATC+AGG - Chr5:87700087-87700106 None:intergenic 55.0%
CGGCCCAAGAATGAAGAGCT+TGG - Chr5:87699972-87699991 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 87699467 87700180 87699467 ID=MsG0580028859.01;Name=MsG0580028859.01
Chr5 mRNA 87699467 87700180 87699467 ID=MsG0580028859.01.T01;Parent=MsG0580028859.01;Name=MsG0580028859.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|237
Chr5 exon 87699467 87700180 87699467 ID=MsG0580028859.01.T01:exon:44772;Parent=MsG0580028859.01.T01
Chr5 CDS 87699467 87700180 87699467 ID=MsG0580028859.01.T01:cds;Parent=MsG0580028859.01.T01
Gene Sequence

>MsG0580028859.01.T01

ATGGATAATCTTCATGGATTTGGCTATGACCGTGTTACAAATGACTATAAGATGATTAGTTATGTAACATTTGTAGCCCCACAGTTGTTTCGAATGACAGGAGGTTATGTACCATTGGGTGATCATATATCTTTACAACCCTTATGGGAGATATATAGCCTTAGAAGTAACTCTTGGAGAAAACTTGATATTGTTATGCCTTCAACTTCTGGTACTACCAATCGAACTAGAGCGTACACAGATGGAGTGTGTCATTGGTGGTGTATACAACATTTTCAACATGAATCTAAAGCAGATTTGGTGTCGTTTGACTTGAGCAATGAGACATTCATTACCACACCCATACCCTTATACATAGATGACTGTACTGATGTGGACGATTATTGTTCATGGAGACACTTTGCAGTGTTAAATGGATCCATTTCCTTGTTCACATATCATGAACATATGGCTACTTTTAAAATATCAATTTTGGGTGAATTAAGTGTGAAAGAATCATGGACCAAGCTCTTCATTCTTGGGCCGTTGCCTTGCATTGAGTATCCTATTGGATTTGGAAAGGGTAAAATACTCTTCATTAGGAAAGACAAAGAAGTAGCATGGTTTGACTTAAATACCCTGATGATCGAGGAGCTTGGTGTTAAAGGAGACGGTCGTATTTCTCCGTTGGTAGTTTACAAGGAAAACCTTCCAATTAGTGGAATCAAAAAATAA
Protein sequence

>MsG0580028859.01.T01

MDNLHGFGYDRVTNDYKMISYVTFVAPQLFRMTGGYVPLGDHISLQPLWEIYSLRSNSWRKLDIVMPSTSGTTNRTRAYTDGVCHWWCIQHFQHESKADLVSFDLSNETFITTPIPLYIDDCTDVDDYCSWRHFAVLNGSISLFTYHEHMATFKISILGELSVKESWTKLFILGPLPCIEYPIGFGKGKILFIRKDKEVAWFDLNTLMIEELGVKGDGRISPLVVYKENLPISGIKK*