AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035299.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035299.01.T01 MTR_0129s0050 73.016 378 81 8 3 369 4 371 8.25e-180 505
MsG0680035299.01.T01 MTR_0129s0070 61.022 372 123 9 2 369 6 359 5.84e-141 406
MsG0680035299.01.T01 MTR_0129s0120 59.140 372 130 9 2 369 6 359 3.71e-134 389
MsG0680035299.01.T01 MTR_4g117550 52.011 373 134 8 1 369 5 336 1.72e-112 333
MsG0680035299.01.T01 MTR_8g063440 49.185 368 159 11 5 369 4 346 1.31e-98 298
MsG0680035299.01.T01 MTR_2g038680 47.382 382 172 11 3 369 6 373 5.16e-92 282
MsG0680035299.01.T01 MTR_2g021800 46.234 385 176 11 5 369 8 381 2.18e-91 280
MsG0680035299.01.T01 MTR_2g022000 46.475 383 177 12 5 369 8 380 3.01e-91 281
MsG0680035299.01.T01 MTR_8g012090 46.053 380 131 9 5 369 8 328 5.69e-90 274
MsG0680035299.01.T01 MTR_5g097330 45.526 380 170 11 5 369 8 365 9.00e-90 276
MsG0680035299.01.T01 MTR_4g055820 47.123 365 177 12 2 360 3 357 2.66e-88 270
MsG0680035299.01.T01 MTR_8g464770 45.430 372 168 10 3 369 2 343 6.80e-87 268
MsG0680035299.01.T01 MTR_1g007450 47.120 382 163 11 3 369 2 359 2.04e-86 268
MsG0680035299.01.T01 MTR_4g014370 43.250 400 160 15 6 369 4 372 4.29e-86 266
MsG0680035299.01.T01 MTR_2g021770 44.648 383 185 15 1 369 1 370 4.94e-83 258
MsG0680035299.01.T01 MTR_0054s0090 44.386 383 177 13 3 369 7 369 6.29e-83 258
MsG0680035299.01.T01 MTR_2g066200 44.386 383 164 15 3 369 2 351 7.27e-83 258
MsG0680035299.01.T01 MTR_5g097220 43.557 388 181 13 1 369 1 369 1.22e-82 258
MsG0680035299.01.T01 MTR_2g104340 44.764 382 171 16 3 369 4 360 1.85e-81 254
MsG0680035299.01.T01 MTR_0054s0100 43.636 385 179 14 3 369 7 371 1.64e-80 252
MsG0680035299.01.T01 MTR_1g007410 46.448 366 168 14 4 361 13 358 3.45e-80 251
MsG0680035299.01.T01 MTR_2g066170 43.316 374 175 12 5 369 4 349 6.96e-80 250
MsG0680035299.01.T01 MTR_7g069550 43.085 376 190 14 3 369 4 364 9.42e-80 250
MsG0680035299.01.T01 MTR_7g017130 45.238 378 171 13 3 369 8 360 3.23e-79 248
MsG0680035299.01.T01 MTR_7g017170 45.722 374 167 13 7 369 12 360 3.82e-79 249
MsG0680035299.01.T01 MTR_8g039500 42.667 375 167 11 5 369 4 340 6.48e-79 246
MsG0680035299.01.T01 MTR_6g090180 44.327 379 185 12 3 369 37 401 6.85e-79 249
MsG0680035299.01.T01 MTR_6g079810 45.288 382 180 14 3 369 59 426 8.54e-79 249
MsG0680035299.01.T01 MTR_2g021950 43.164 373 182 10 7 369 10 362 3.26e-78 246
MsG0680035299.01.T01 MTR_0134s0060 43.590 390 177 13 5 369 4 375 3.65e-78 246
MsG0680035299.01.T01 MTR_4g102410 43.979 382 180 15 3 369 51 413 6.63e-78 246
MsG0680035299.01.T01 MTR_6g086825 45.263 380 165 14 10 369 67 423 1.66e-77 246
MsG0680035299.01.T01 MTR_6g461660 44.503 382 168 15 4 369 10 363 2.66e-77 244
MsG0680035299.01.T01 MTR_0831s0010 42.391 368 174 15 10 369 47 384 2.69e-76 242
MsG0680035299.01.T01 MTR_6g079770 45.407 381 177 11 8 369 12 380 5.69e-76 241
MsG0680035299.01.T01 MTR_3g011120 42.895 373 174 13 3 369 4 343 5.94e-76 239
MsG0680035299.01.T01 MTR_6g080680 42.487 386 171 11 1 369 7 358 1.06e-75 239
MsG0680035299.01.T01 MTR_1g007430 46.765 340 150 11 24 359 7 319 1.29e-75 237
MsG0680035299.01.T01 MTR_8g467670 41.645 377 177 14 1 369 1 342 1.43e-75 239
MsG0680035299.01.T01 MTR_4g028510 43.112 392 173 17 1 369 1 365 2.42e-75 240
MsG0680035299.01.T01 MTR_8g041270 42.021 376 199 10 3 369 5 370 3.72e-75 238
MsG0680035299.01.T01 MTR_8g013000 44.000 375 168 15 4 361 1 350 5.04e-75 238
MsG0680035299.01.T01 MTR_7g017040 44.503 382 161 15 8 369 11 361 6.18e-75 238
MsG0680035299.01.T01 MTR_5g097350 45.067 375 159 13 8 369 11 351 8.44e-75 237
MsG0680035299.01.T01 MTR_5g096630 43.194 382 182 13 7 369 12 377 9.31e-75 238
MsG0680035299.01.T01 MTR_5g059430 40.816 392 190 13 2 369 15 388 1.88e-74 237
MsG0680035299.01.T01 MTR_5g037680 42.328 378 163 15 8 367 3 343 3.29e-74 237
MsG0680035299.01.T01 MTR_2g104280 43.767 377 185 14 4 367 5 367 5.77e-74 235
MsG0680035299.01.T01 MTR_7g079640 43.236 377 163 15 3 369 4 339 9.43e-74 234
MsG0680035299.01.T01 MTR_5g069390 40.945 381 189 11 6 369 19 380 1.51e-73 237
MsG0680035299.01.T01 MTR_2g066150 40.483 373 161 10 5 369 4 323 3.47e-72 229
MsG0680035299.01.T01 MTR_2g065860 41.406 384 166 13 7 369 6 351 3.73e-72 230
MsG0680035299.01.T01 MTR_4g028660 40.310 387 188 11 1 369 1 362 1.68e-71 228
MsG0680035299.01.T01 MTR_4g027450 40.310 387 188 11 1 369 1 362 1.68e-71 228
MsG0680035299.01.T01 MTR_8g046310 41.688 391 154 17 1 368 1 340 4.10e-71 227
MsG0680035299.01.T01 MTR_2g064950 42.593 378 180 16 4 369 1 353 9.99e-71 226
MsG0680035299.01.T01 MTR_2g065840 40.885 384 175 13 3 369 2 350 2.86e-70 225
MsG0680035299.01.T01 MTR_4g028680 41.795 390 179 16 1 369 1 363 3.22e-69 223
MsG0680035299.01.T01 MTR_2g034700 41.398 372 164 13 1 361 1 329 1.13e-68 221
MsG0680035299.01.T01 MTR_4g028750 41.067 375 180 11 10 369 13 361 1.56e-68 221
MsG0680035299.01.T01 MTR_5g072060 42.623 366 170 13 11 369 4 336 3.25e-68 226
MsG0680035299.01.T01 MTR_8g046220 41.667 396 175 15 1 368 1 368 3.52e-68 220
MsG0680035299.01.T01 MTR_8g063330 40.591 372 185 12 5 364 4 351 3.57e-68 222
MsG0680035299.01.T01 MTR_5g097680 39.899 396 189 13 7 368 11 391 5.89e-67 218
MsG0680035299.01.T01 MTR_1g053510 41.602 387 181 16 1 364 1 365 1.15e-66 216
MsG0680035299.01.T01 MTR_6g478230 40.314 382 185 8 3 369 17 370 1.65e-66 216
MsG0680035299.01.T01 MTR_5g092850 38.462 390 188 14 2 369 4 363 3.00e-65 213
MsG0680035299.01.T01 MTR_8g064890 38.992 377 190 11 3 369 5 351 6.26e-65 211
MsG0680035299.01.T01 MTR_4g130330 41.316 380 173 15 10 369 4 353 6.71e-65 211
MsG0680035299.01.T01 MTR_5g024260 39.788 377 179 12 10 367 19 366 7.25e-65 212
MsG0680035299.01.T01 MTR_8g046200 40.291 412 174 18 1 368 1 384 1.27e-64 211
MsG0680035299.01.T01 MTR_5g074850 39.744 390 189 14 1 369 23 387 5.11e-64 219
MsG0680035299.01.T01 MTR_5g091140 41.270 378 175 14 3 369 38 379 1.47e-63 209
MsG0680035299.01.T01 MTR_5g096910 38.482 382 187 12 3 369 7 355 2.23e-63 207
MsG0680035299.01.T01 MTR_8g033140 37.789 389 191 14 9 369 15 380 4.59e-63 207
MsG0680035299.01.T01 MTR_8g032980 38.213 403 193 14 2 369 3 384 2.69e-62 205
MsG0680035299.01.T01 MTR_7g111700 40.838 382 150 14 5 369 7 329 5.95e-62 203
MsG0680035299.01.T01 MTR_7g016930 43.235 340 139 14 7 337 10 304 1.32e-61 201
MsG0680035299.01.T01 MTR_5g075370 39.267 382 187 13 10 369 5 363 4.07e-60 207
MsG0680035299.01.T01 MTR_8g033090 38.961 385 190 16 10 369 11 375 1.14e-59 198
MsG0680035299.01.T01 MTR_5g074800 41.009 317 168 12 57 369 8 309 1.06e-58 194
MsG0680035299.01.T01 MTR_4g007940 39.441 322 159 11 62 369 6 305 1.41e-57 191
MsG0680035299.01.T01 MTR_8g033110 38.642 383 199 14 1 361 1 369 4.37e-57 192
MsG0680035299.01.T01 MTR_8g063370 35.537 363 194 12 11 367 22 350 3.68e-56 189
MsG0680035299.01.T01 MTR_6g090250 39.516 372 179 14 31 369 29 387 2.29e-55 187
MsG0680035299.01.T01 MTR_8g018110 37.831 378 187 12 10 368 11 359 3.79e-55 186
MsG0680035299.01.T01 MTR_5g022850 38.786 379 143 16 8 369 11 317 1.88e-53 180
MsG0680035299.01.T01 MTR_1g098180 37.240 384 166 15 3 369 4 329 7.22e-53 179
MsG0680035299.01.T01 MTR_6g078010 37.612 335 157 10 50 369 1 298 2.37e-51 175
MsG0680035299.01.T01 MTR_5g096900 40.751 346 142 15 8 329 7 313 2.92e-51 174
MsG0680035299.01.T01 MTR_7g104710 38.485 330 137 10 5 321 9 285 2.83e-50 171
MsG0680035299.01.T01 MTR_6g004450 44.298 228 100 5 145 369 29 232 6.73e-50 169
MsG0680035299.01.T01 MTR_8g036970 34.521 365 147 11 17 369 2 286 3.92e-49 169
MsG0680035299.01.T01 MTR_5g092860 36.975 357 167 12 31 369 20 336 6.74e-49 169
MsG0680035299.01.T01 MTR_5g094350 39.535 301 133 12 9 291 9 278 1.55e-46 160
MsG0680035299.01.T01 MTR_6g079790 41.897 253 112 7 133 369 39 272 4.40e-46 160
MsG0680035299.01.T01 MTR_5g097820 43.116 276 121 12 8 269 16 269 7.13e-46 158
MsG0680035299.01.T01 MTR_1g050312 39.041 292 120 12 85 368 16 257 1.16e-45 158
MsG0680035299.01.T01 MTR_5g023970 54.140 157 63 3 214 369 10 158 1.52e-45 155
MsG0680035299.01.T01 MTR_8g063310 33.333 372 202 14 5 363 14 352 1.78e-45 161
MsG0680035299.01.T01 MTR_5g086590 40.909 242 106 7 132 369 14 222 5.47e-45 155
MsG0680035299.01.T01 MTR_8g064790 33.060 366 160 12 11 369 13 300 8.81e-45 157
MsG0680035299.01.T01 MTR_8g073570 51.149 174 79 5 4 176 1 169 1.04e-44 152
MsG0680035299.01.T01 MTR_6g087620 37.333 300 124 11 85 369 1 251 9.11e-44 153
MsG0680035299.01.T01 MTR_5g098950 42.174 230 84 6 133 361 90 271 1.41e-43 152
MsG0680035299.01.T01 MTR_1g050308 41.202 233 110 7 5 232 26 236 3.71e-43 153
MsG0680035299.01.T01 MTR_1g050308 53.165 79 32 3 293 368 236 312 4.77e-13 70.1
MsG0680035299.01.T01 MTR_5g076490 38.608 316 147 13 50 352 1 282 5.75e-43 152
MsG0680035299.01.T01 MTR_2g104260 40.702 285 144 8 3 275 4 275 6.37e-43 150
MsG0680035299.01.T01 MTR_5g064700 35.632 348 169 15 56 368 5 332 2.25e-42 152
MsG0680035299.01.T01 MTR_8g063350 33.152 368 154 16 13 366 14 303 1.38e-41 149
MsG0680035299.01.T01 MTR_2g021920 44.651 215 95 7 166 369 37 238 1.66e-41 147
MsG0680035299.01.T01 MTR_1g076810 40.964 249 120 6 5 245 10 239 1.10e-40 152
MsG0680035299.01.T01 MTR_6g070880 42.083 240 116 9 8 233 27 257 1.86e-40 144
MsG0680035299.01.T01 MTR_6g071420 42.083 240 116 9 8 233 27 257 1.86e-40 144
MsG0680035299.01.T01 MTR_6g009350 42.584 209 94 6 166 369 8 195 1.73e-39 139
MsG0680035299.01.T01 MTR_5g043605 33.952 377 147 16 5 369 17 303 2.66e-39 144
MsG0680035299.01.T01 MTR_4g016000 40.090 222 97 9 136 355 2 189 7.41e-38 135
MsG0680035299.01.T01 MTR_5g037190 38.571 280 128 10 3 272 6 251 2.31e-37 135
MsG0680035299.01.T01 MTR_7g023800 33.628 339 148 11 43 369 1 274 3.30e-35 131
MsG0680035299.01.T01 MTR_3g018750 39.450 218 102 7 165 369 2 202 6.12e-35 129
MsG0680035299.01.T01 MTR_5g068490 37.091 275 128 11 94 366 8 239 9.44e-35 129
MsG0680035299.01.T01 MTR_4g014370 44.886 176 78 7 199 369 139 300 1.09e-34 130
MsG0680035299.01.T01 MTR_4g014370 52.381 126 55 3 6 127 15 139 9.57e-30 117
MsG0680035299.01.T01 MTR_7g019250 40.265 226 102 7 145 369 206 399 1.19e-34 133
MsG0680035299.01.T01 MTR_6g090260 46.835 158 74 4 215 369 75 225 3.79e-34 127
MsG0680035299.01.T01 MTR_8g033000 33.618 351 177 14 50 369 1 326 4.19e-34 129
MsG0680035299.01.T01 MTR_6g465360 40.417 240 110 11 5 223 54 281 8.65e-34 127
MsG0680035299.01.T01 MTR_5g097850 47.403 154 70 5 220 369 63 209 6.61e-33 123
MsG0680035299.01.T01 MTR_1g115205 35.769 260 120 9 1 253 17 236 1.14e-29 115
MsG0680035299.01.T01 MTR_5g097540 44.966 149 65 5 215 361 97 230 1.15e-28 113
MsG0680035299.01.T01 MTR_7g101200 35.443 237 97 9 132 361 39 226 3.47e-28 110
MsG0680035299.01.T01 MTR_3g019290 37.640 178 69 5 10 184 11 149 4.80e-25 100
MsG0680035299.01.T01 MTR_5g066420 44.531 128 62 3 246 369 1 123 7.08e-25 99.4
MsG0680035299.01.T01 MTR_8g035690 33.466 251 127 11 137 365 30 262 1.09e-24 102
MsG0680035299.01.T01 MTR_7g017150 41.837 196 95 7 165 356 36 216 2.09e-24 101
MsG0680035299.01.T01 MTR_7g017120 43.787 169 75 7 197 356 58 215 2.41e-23 98.2
MsG0680035299.01.T01 MTR_5g097650 40.645 155 74 5 6 154 13 155 2.63e-23 95.1
MsG0680035299.01.T01 MTR_3g047580 40.268 149 63 6 1 145 1 127 2.44e-21 89.0
MsG0680035299.01.T01 MTR_1g047080 32.107 299 149 18 50 332 1 261 3.24e-21 92.8
MsG0680035299.01.T01 MTR_5g096070 39.326 178 69 7 4 174 14 159 3.49e-21 89.4
MsG0680035299.01.T01 MTR_3g030620 44.521 146 68 6 231 369 5 144 5.47e-21 89.7
MsG0680035299.01.T01 MTR_4g133170 24.324 370 206 14 16 367 7 320 1.25e-20 92.8
MsG0680035299.01.T01 MTR_4g055060 26.706 337 190 15 16 342 33 322 3.65e-20 91.3
MsG0680035299.01.T01 MTR_2g029990 25.309 324 201 10 16 339 54 336 1.12e-18 87.0
MsG0680035299.01.T01 MTR_5g091150 32.673 202 77 8 114 313 40 184 2.29e-18 82.8
MsG0680035299.01.T01 MTR_2g021150 26.149 348 185 13 15 345 16 308 2.64e-18 85.9
MsG0680035299.01.T01 MTR_7g407070 28.161 348 197 17 11 339 22 335 8.59e-18 84.3
MsG0680035299.01.T01 MTR_2g024110 23.952 334 201 13 16 342 7 294 1.57e-17 83.6
MsG0680035299.01.T01 MTR_6g079730 47.170 106 49 4 265 369 14 113 1.60e-17 79.0
MsG0680035299.01.T01 MTR_5g096920 42.857 126 59 5 246 369 1 115 3.08e-17 78.6
MsG0680035299.01.T01 MTR_3g013770 25.959 339 187 12 16 341 36 323 8.83e-17 81.3
MsG0680035299.01.T01 MTR_5g057790 25.146 342 196 13 16 349 49 338 1.22e-16 80.9
MsG0680035299.01.T01 MTR_5g036250 75.510 49 12 0 321 369 27 75 1.26e-16 77.8
MsG0680035299.01.T01 MTR_0064s0160 27.467 375 219 15 12 365 41 383 1.47e-16 81.3
MsG0680035299.01.T01 MTR_5g097660 55.405 74 31 2 296 367 8 81 1.94e-16 75.1
MsG0680035299.01.T01 MTR_5g048160 30.667 300 156 15 1 281 1 267 2.16e-16 80.1
MsG0680035299.01.T01 MTR_2g031720 25.613 367 220 15 15 369 8 333 3.15e-16 79.7
MsG0680035299.01.T01 MTR_5g086780 74.000 50 13 0 4 53 7 56 3.63e-16 77.4
MsG0680035299.01.T01 MTR_5g086780 39.024 123 67 5 251 369 97 215 3.19e-15 74.7
MsG0680035299.01.T01 MTR_3g007360 27.164 335 176 15 21 342 60 339 4.44e-16 79.3
MsG0680035299.01.T01 MTR_1g061330 25.521 384 210 17 1 369 1 323 8.41e-16 78.6
MsG0680035299.01.T01 MTR_3g007410 26.807 332 181 14 21 342 60 339 9.13e-16 78.6
MsG0680035299.01.T01 MTR_1g037540 25.000 396 215 17 16 369 8 363 1.10e-15 78.2
MsG0680035299.01.T01 MTR_3g013740 26.074 349 206 13 8 345 39 346 1.22e-15 78.2
MsG0680035299.01.T01 MTR_2g022020 49.275 69 34 1 302 369 17 85 1.86e-15 72.4
MsG0680035299.01.T01 MTR_3g436150 27.941 340 184 18 16 339 35 329 2.61e-15 77.0
MsG0680035299.01.T01 MTR_1g097560 25.474 369 187 16 10 360 33 331 2.65e-15 77.0
MsG0680035299.01.T01 MTR_4g094400 41.406 128 44 6 244 356 8 119 3.86e-15 72.0
MsG0680035299.01.T01 MTR_3g014540 25.148 338 193 12 13 341 29 315 4.16e-15 76.3
MsG0680035299.01.T01 MTR_5g057690 24.927 341 188 13 16 349 49 328 5.07e-15 76.3
MsG0680035299.01.T01 MTR_4g094365 25.886 367 210 14 12 368 7 321 5.32e-15 75.9
MsG0680035299.01.T01 MTR_2g028130 23.851 348 203 11 16 341 8 315 5.63e-15 76.3
MsG0680035299.01.T01 MTR_5g096050 41.818 110 47 3 246 344 1 104 1.13e-14 70.5
MsG0680035299.01.T01 MTR_2g028160 24.576 354 195 16 16 341 8 317 2.36e-14 74.3
MsG0680035299.01.T01 MTR_5g057710 25.439 342 189 14 16 346 49 335 3.66e-14 73.6
MsG0680035299.01.T01 MTR_4g117780 27.492 331 189 13 15 341 13 296 3.82e-14 73.2
MsG0680035299.01.T01 MTR_4g116330 25.131 382 207 16 7 369 17 338 4.25e-14 73.2
MsG0680035299.01.T01 MTR_4g030830 24.937 397 201 17 16 367 12 356 4.65e-14 73.2
MsG0680035299.01.T01 MTR_2g021155 27.273 330 189 11 16 341 39 321 5.27e-14 73.9
MsG0680035299.01.T01 MTR_7g070440 28.857 350 177 17 13 341 7 305 6.38e-14 72.8
MsG0680035299.01.T01 MTR_3g009240 24.771 327 192 13 16 339 39 314 7.77e-14 72.4
MsG0680035299.01.T01 MTR_3g011060 26.301 346 183 14 16 341 31 324 1.31e-13 72.0
MsG0680035299.01.T01 MTR_5g011200 24.478 335 189 14 16 338 20 302 1.38e-13 71.6
MsG0680035299.01.T01 MTR_2g026010 22.874 341 203 13 32 357 23 318 1.58e-13 71.6
MsG0680035299.01.T01 MTR_3g083640 25.526 333 179 15 16 338 58 331 1.77e-13 71.6
MsG0680035299.01.T01 MTR_4g117770 25.595 336 195 12 12 341 10 296 2.06e-13 71.2
MsG0680035299.01.T01 MTR_4g117810 25.595 336 195 12 12 341 10 296 2.06e-13 71.2
MsG0680035299.01.T01 MTR_1g050542 25.135 370 204 16 15 369 60 371 5.93e-13 70.1
MsG0680035299.01.T01 MTR_3g006670 25.225 333 194 13 16 341 52 336 8.47e-13 69.7
MsG0680035299.01.T01 MTR_3g014570 25.210 357 188 17 8 341 15 315 9.07e-13 69.3
MsG0680035299.01.T01 MTR_1g068875 24.012 329 202 12 16 341 7 290 1.14e-12 68.9
MsG0680035299.01.T01 MTR_2g425980 22.674 344 209 12 16 341 8 312 1.18e-12 68.9
MsG0680035299.01.T01 MTR_4g116340 29.134 254 131 8 16 266 39 246 2.07e-12 67.0
MsG0680035299.01.T01 MTR_2g025420 24.286 350 205 14 16 341 9 322 3.64e-12 67.8
MsG0680035299.01.T01 MTR_3g047540 46.914 81 37 3 215 293 6 82 4.36e-12 62.0
MsG0680035299.01.T01 MTR_2g046830 26.126 333 189 16 15 341 27 308 4.61e-12 67.4
MsG0680035299.01.T01 MTR_4g117850 24.198 343 202 11 12 347 22 313 6.04e-12 66.6
MsG0680035299.01.T01 MTR_8g041440 50.000 74 34 2 4 75 6 78 6.37e-12 62.4
MsG0680035299.01.T01 MTR_4g031770 26.136 352 198 17 16 366 7 297 9.50e-12 66.2
MsG0680035299.01.T01 MTR_4g122850 24.157 356 196 15 24 359 12 313 9.71e-12 66.2
MsG0680035299.01.T01 MTR_7g013590 25.220 341 185 14 16 341 39 324 9.80e-12 66.2
MsG0680035299.01.T01 MTR_1g097490 24.490 343 207 13 1 341 37 329 2.93e-11 64.7
MsG0680035299.01.T01 MTR_5g097210 24.363 353 209 13 15 359 11 313 5.29e-11 63.9
MsG0680035299.01.T01 MTR_2g031640 23.494 332 203 13 16 341 9 295 5.98e-11 63.9
MsG0680035299.01.T01 MTR_4g109280 24.518 363 200 12 11 359 6 308 7.49e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035299.01.T01 AT3G06240 24.860 358 197 14 16 340 39 357 3.10e-14 73.9
MsG0680035299.01.T01 AT4G12560 23.977 342 207 12 13 342 4 304 6.13e-11 63.9
MsG0680035299.01.T01 AT4G12560 23.977 342 207 12 13 342 4 304 6.13e-11 63.9
MsG0680035299.01.T01 AT4G12560 23.977 342 207 12 13 342 4 304 6.13e-11 63.9

Find 74 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTGTTGTATTTGCTTTC+TGG 0.160359 6:-101725897 MsG0680035299.01.T01:CDS
ATACAACAGTTGTACCATTT+TGG 0.206661 6:+101725766 None:intergenic
CAGTACATGTTCATGAAAAT+AGG 0.242390 6:+101726005 None:intergenic
CCTGGCATTCATCTTCCTAT+TGG 0.255192 6:-101725111 MsG0680035299.01.T01:CDS
CTGGAAAAGCTTCATGGATT+TGG 0.263741 6:-101725660 MsG0680035299.01.T01:CDS
TTATGATAAAGAAGCATATT+TGG 0.277040 6:-101725370 MsG0680035299.01.T01:CDS
CTCTTGGAGGAAACTTGATT+TGG 0.301637 6:-101725475 MsG0680035299.01.T01:CDS
ATCATGTGTCTTTGCCAAAA+TGG 0.326309 6:-101725780 MsG0680035299.01.T01:CDS
TTCATTCTTGAGCCCTTACC+TGG 0.376010 6:-101725129 MsG0680035299.01.T01:CDS
AGCTTAAATTCGTCGGTAGT+TGG 0.380912 6:+101725735 None:intergenic
ATTGAACTGGAAAAGCTTCA+TGG 0.382118 6:-101725666 MsG0680035299.01.T01:CDS
AGTACATGTTCATGAAAATA+GGG 0.382801 6:+101726006 None:intergenic
ATGGTACAACTGTTGTATTA+TGG 0.397855 6:-101725761 MsG0680035299.01.T01:CDS
GGATTCTCTTTCAACTGAAA+AGG 0.426487 6:-101726141 MsG0680035299.01.T01:CDS
GGCTCTAACTGAGTAGGGCT+TGG 0.430697 6:+101725705 None:intergenic
AAGAATGGGGATTTATTCTT+CGG 0.436201 6:-101725081 MsG0680035299.01.T01:CDS
ATATTGGGTCCCGTTATTAA+CGG 0.441956 6:-101725804 MsG0680035299.01.T01:CDS
TTTCATATCTGATGCTTATG+AGG 0.448257 6:-101725976 MsG0680035299.01.T01:CDS
CCTATTGGAGAGGGTAAGAA+TGG 0.449153 6:-101725096 MsG0680035299.01.T01:CDS
CCATTCTTACCCTCTCCAAT+AGG 0.451115 6:+101725096 None:intergenic
TAACCATGATCGGACGGATC+TGG 0.455110 6:+101725918 None:intergenic
CGGAGGAAATGATAACGAAC+TGG 0.458615 6:-101725061 MsG0680035299.01.T01:CDS
ATAGCTTAAGAAGTAACTCT+TGG 0.460915 6:-101725491 MsG0680035299.01.T01:CDS
GGGCTCAAGAATGAAGAGTT+TGG 0.471014 6:+101725137 None:intergenic
GATCTGGCTGAGTCTGTTGT+AGG 0.474794 6:+101725934 None:intergenic
CAGCCAGATCCGTCCGATCA+TGG 0.476352 6:-101725921 MsG0680035299.01.T01:CDS
CACATGATTCCGTTAATAAC+GGG 0.476435 6:+101725795 None:intergenic
TTACTTCAGTAAGTAAATCA+TGG 0.481819 6:-101726046 MsG0680035299.01.T01:CDS
ATCAAAATCAATCAAAGTTG+AGG 0.486041 6:+101725302 None:intergenic
AGGAAGATGAATGCCAGGTA+AGG 0.499700 6:+101725116 None:intergenic
GCTTAAGAAGTAACTCTTGG+AGG 0.502590 6:-101725488 MsG0680035299.01.T01:CDS
GTGTGTCACGTGACGACGTA+TGG 0.503383 6:-101725521 MsG0680035299.01.T01:CDS
GGTGTCTATGTGTACTTGAA+TGG 0.503435 6:-101725423 MsG0680035299.01.T01:CDS
ACACATGATTCCGTTAATAA+CGG 0.504481 6:+101725794 None:intergenic
TCTAACTGAGTAGGGCTTGG+AGG 0.506172 6:+101725708 None:intergenic
ACTTGAATGGAGTGTGTCAT+TGG 0.506463 6:-101725410 MsG0680035299.01.T01:CDS
CCCTACTCAGTTAGAGCCCT+CGG 0.509530 6:-101725700 MsG0680035299.01.T01:CDS
TCAAAATCAATCAAAGTTGA+GGG 0.516315 6:+101725303 None:intergenic
CTATTGGAGAGGGTAAGAAT+GGG 0.524925 6:-101725095 MsG0680035299.01.T01:CDS
GGTACGTTATGAGATTGAAC+TGG 0.528668 6:-101725679 MsG0680035299.01.T01:CDS
CCAATAGGAAGATGAATGCC+AGG 0.543263 6:+101725111 None:intergenic
AATGGGGATTTATTCTTCGG+AGG 0.546738 6:-101725078 MsG0680035299.01.T01:CDS
ACTGAGTAGGGCTTGGAGGA+AGG 0.546922 6:+101725712 None:intergenic
AAGTTGGTGTGAAGGAGTCT+TGG 0.557147 6:-101725161 MsG0680035299.01.T01:CDS
ATCTCTCTAAACAGAGGTGG+CGG 0.565319 6:+101725843 None:intergenic
GGAAGATGAATGCCAGGTAA+GGG 0.569722 6:+101725117 None:intergenic
CTGGCTGAGTCTGTTGTAGG+AGG 0.572465 6:+101725937 None:intergenic
TTTGGGTGAAGTTGGTGTGA+AGG 0.573635 6:-101725169 MsG0680035299.01.T01:CDS
CAAAATTATAGTGACTCTGA+AGG 0.575610 6:-101725567 MsG0680035299.01.T01:CDS
ATACAACACATAACCATGAT+CGG 0.578358 6:+101725908 None:intergenic
GGTGTCATTTGACTTAAGCA+AGG 0.581015 6:-101725349 MsG0680035299.01.T01:CDS
CCGAGGGCTCTAACTGAGTA+GGG 0.583774 6:+101725700 None:intergenic
ATTCATCTTCCTATTGGAGA+GGG 0.591263 6:-101725105 MsG0680035299.01.T01:CDS
TGAATGGAGTGTGTCATTGG+TGG 0.597382 6:-101725407 MsG0680035299.01.T01:CDS
AGGAAGGAGCTTAAATTCGT+CGG 0.603818 6:+101725728 None:intergenic
CATTCATCTTCCTATTGGAG+AGG 0.607032 6:-101725106 MsG0680035299.01.T01:CDS
ACGGGACCCAATATAAAACC+AGG 0.608292 6:+101725813 None:intergenic
AACACATAACCATGATCGGA+CGG 0.610420 6:+101725912 None:intergenic
TGTGTCACGTGACGACGTAT+GGG 0.614734 6:-101725520 MsG0680035299.01.T01:CDS
ACCGAGGGCTCTAACTGAGT+AGG 0.617472 6:+101725699 None:intergenic
TTCAATCTCATAACGTACCG+AGG 0.621105 6:+101725683 None:intergenic
TTTAGAGAGATTAACAACCC+TGG 0.626410 6:-101725831 MsG0680035299.01.T01:CDS
CGTTATTGTCATCTCTAACA+CGG 0.635999 6:+101725631 None:intergenic
TCAATCTCATAACGTACCGA+GGG 0.639245 6:+101725684 None:intergenic
TATTGGAGAGGGTAAGAATG+GGG 0.642197 6:-101725094 MsG0680035299.01.T01:CDS
TTAATCTCTCTAAACAGAGG+TGG 0.651940 6:+101725840 None:intergenic
CTTGATTTGGATATGCCTTG+TGG 0.655058 6:-101725462 MsG0680035299.01.T01:CDS
ACAAAAGTCGTCATACCACA+AGG 0.657315 6:+101725447 None:intergenic
ATACGTCGTCACGTGACACA+CGG 0.660283 6:+101725523 None:intergenic
GTCATTTGACTTAAGCAAGG+AGG 0.684952 6:-101725346 MsG0680035299.01.T01:CDS
TCTGATGCTTATGAGGACGA+TGG 0.687700 6:-101725969 MsG0680035299.01.T01:CDS
TTGTTAATCTCTCTAAACAG+AGG 0.691820 6:+101725837 None:intergenic
CGGGACCCAATATAAAACCA+GGG 0.717616 6:+101725814 None:intergenic
AATATGAGATCAAAGCAATG+TGG 0.721224 6:+101725220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCACATATCAATTTT+GGG - Chr6:101726013-101726032 MsG0680035299.01.T01:CDS 20.0%
!!! TACTTTTCACATATCAATTT+TGG - Chr6:101726012-101726031 MsG0680035299.01.T01:CDS 20.0%
!!! TTATGATAAAGAAGCATATT+TGG - Chr6:101725829-101725848 MsG0680035299.01.T01:CDS 20.0%
! AGTACATGTTCATGAAAATA+GGG + Chr6:101725196-101725215 None:intergenic 25.0%
! ATCAAAATCAATCAAAGTTG+AGG + Chr6:101725900-101725919 None:intergenic 25.0%
! TCAAAATCAATCAAAGTTGA+GGG + Chr6:101725899-101725918 None:intergenic 25.0%
! TTACTTCAGTAAGTAAATCA+TGG - Chr6:101725153-101725172 MsG0680035299.01.T01:CDS 25.0%
!! AATCGTTTCAAAGATTTTAG+AGG + Chr6:101725134-101725153 None:intergenic 25.0%
!!! ACTTTGATTGATTTTGATTC+TGG - Chr6:101725902-101725921 MsG0680035299.01.T01:CDS 25.0%
AAGAATGGGGATTTATTCTT+CGG - Chr6:101726118-101726137 MsG0680035299.01.T01:CDS 30.0%
AATATGAGATCAAAGCAATG+TGG + Chr6:101725982-101726001 None:intergenic 30.0%
ACACATGATTCCGTTAATAA+CGG + Chr6:101725408-101725427 None:intergenic 30.0%
ATACAACACATAACCATGAT+CGG + Chr6:101725294-101725313 None:intergenic 30.0%
ATAGCTTAAGAAGTAACTCT+TGG - Chr6:101725708-101725727 MsG0680035299.01.T01:CDS 30.0%
ATGGTACAACTGTTGTATTA+TGG - Chr6:101725438-101725457 MsG0680035299.01.T01:CDS 30.0%
CAAAATTATAGTGACTCTGA+AGG - Chr6:101725632-101725651 MsG0680035299.01.T01:CDS 30.0%
CAGTACATGTTCATGAAAAT+AGG + Chr6:101725197-101725216 None:intergenic 30.0%
TATGTGTTGTATTTGCTTTC+TGG - Chr6:101725302-101725321 MsG0680035299.01.T01:CDS 30.0%
TTGTTAATCTCTCTAAACAG+AGG + Chr6:101725365-101725384 None:intergenic 30.0%
TTTCATATCTGATGCTTATG+AGG - Chr6:101725223-101725242 MsG0680035299.01.T01:CDS 30.0%
! ATACAACAGTTGTACCATTT+TGG + Chr6:101725436-101725455 None:intergenic 30.0%
!! ATATCAATTTTGGGTGAAGT+TGG - Chr6:101726022-101726041 MsG0680035299.01.T01:CDS 30.0%
!!! AACAACCCTGGTTTTATATT+GGG - Chr6:101725380-101725399 MsG0680035299.01.T01:CDS 30.0%
!!! TAACAACCCTGGTTTTATAT+TGG - Chr6:101725379-101725398 MsG0680035299.01.T01:CDS 30.0%
ATATTGGGTCCCGTTATTAA+CGG - Chr6:101725395-101725414 MsG0680035299.01.T01:CDS 35.0%
ATCATGTGTCTTTGCCAAAA+TGG - Chr6:101725419-101725438 MsG0680035299.01.T01:CDS 35.0%
ATTCATCTTCCTATTGGAGA+GGG - Chr6:101726094-101726113 MsG0680035299.01.T01:CDS 35.0%
ATTGAACTGGAAAAGCTTCA+TGG - Chr6:101725533-101725552 MsG0680035299.01.T01:CDS 35.0%
CACATGATTCCGTTAATAAC+GGG + Chr6:101725407-101725426 None:intergenic 35.0%
CGTTATTGTCATCTCTAACA+CGG + Chr6:101725571-101725590 None:intergenic 35.0%
GGATTCTCTTTCAACTGAAA+AGG - Chr6:101725058-101725077 MsG0680035299.01.T01:CDS 35.0%
TTAATCTCTCTAAACAGAGG+TGG + Chr6:101725362-101725381 None:intergenic 35.0%
TTTAGAGAGATTAACAACCC+TGG - Chr6:101725368-101725387 MsG0680035299.01.T01:CDS 35.0%
!! TAGAGGCAATTTTGAGAGAA+TGG + Chr6:101725117-101725136 None:intergenic 35.0%
AACACATAACCATGATCGGA+CGG + Chr6:101725290-101725309 None:intergenic 40.0%
AATGGGGATTTATTCTTCGG+AGG - Chr6:101726121-101726140 MsG0680035299.01.T01:CDS 40.0%
ACAAAAGTCGTCATACCACA+AGG + Chr6:101725755-101725774 None:intergenic 40.0%
ACTTGAATGGAGTGTGTCAT+TGG - Chr6:101725789-101725808 MsG0680035299.01.T01:CDS 40.0%
AGCTTAAATTCGTCGGTAGT+TGG + Chr6:101725467-101725486 None:intergenic 40.0%
AGGAAGGAGCTTAAATTCGT+CGG + Chr6:101725474-101725493 None:intergenic 40.0%
CATTCATCTTCCTATTGGAG+AGG - Chr6:101726093-101726112 MsG0680035299.01.T01:CDS 40.0%
CTATTGGAGAGGGTAAGAAT+GGG - Chr6:101726104-101726123 MsG0680035299.01.T01:CDS 40.0%
CTCTTGGAGGAAACTTGATT+TGG - Chr6:101725724-101725743 MsG0680035299.01.T01:CDS 40.0%
CTGGAAAAGCTTCATGGATT+TGG - Chr6:101725539-101725558 MsG0680035299.01.T01:CDS 40.0%
GCTTAAGAAGTAACTCTTGG+AGG - Chr6:101725711-101725730 MsG0680035299.01.T01:CDS 40.0%
GGTACGTTATGAGATTGAAC+TGG - Chr6:101725520-101725539 MsG0680035299.01.T01:CDS 40.0%
GGTGTCTATGTGTACTTGAA+TGG - Chr6:101725776-101725795 MsG0680035299.01.T01:CDS 40.0%
TATTGGAGAGGGTAAGAATG+GGG - Chr6:101726105-101726124 MsG0680035299.01.T01:CDS 40.0%
TCAATCTCATAACGTACCGA+GGG + Chr6:101725518-101725537 None:intergenic 40.0%
TTCAATCTCATAACGTACCG+AGG + Chr6:101725519-101725538 None:intergenic 40.0%
! GTCATTTGACTTAAGCAAGG+AGG - Chr6:101725853-101725872 MsG0680035299.01.T01:CDS 40.0%
! TGTGGTATGACGACTTTTGT+AGG - Chr6:101725755-101725774 MsG0680035299.01.T01:CDS 40.0%
!! CTTGATTTGGATATGCCTTG+TGG - Chr6:101725737-101725756 MsG0680035299.01.T01:CDS 40.0%
!! GGTGTCATTTGACTTAAGCA+AGG - Chr6:101725850-101725869 MsG0680035299.01.T01:CDS 40.0%
ACGGGACCCAATATAAAACC+AGG + Chr6:101725389-101725408 None:intergenic 45.0%
AGGAAGATGAATGCCAGGTA+AGG + Chr6:101726086-101726105 None:intergenic 45.0%
ATCTCTCTAAACAGAGGTGG+CGG + Chr6:101725359-101725378 None:intergenic 45.0%
CCAATAGGAAGATGAATGCC+AGG + Chr6:101726091-101726110 None:intergenic 45.0%
CCATTCTTACCCTCTCCAAT+AGG + Chr6:101726106-101726125 None:intergenic 45.0%
CCTATTGGAGAGGGTAAGAA+TGG - Chr6:101726103-101726122 MsG0680035299.01.T01:CDS 45.0%
CCTGGCATTCATCTTCCTAT+TGG - Chr6:101726088-101726107 MsG0680035299.01.T01:CDS 45.0%
CGGGACCCAATATAAAACCA+GGG + Chr6:101725388-101725407 None:intergenic 45.0%
GGAAGATGAATGCCAGGTAA+GGG + Chr6:101726085-101726104 None:intergenic 45.0%
GGGCTCAAGAATGAAGAGTT+TGG + Chr6:101726065-101726084 None:intergenic 45.0%
TCTGATGCTTATGAGGACGA+TGG - Chr6:101725230-101725249 MsG0680035299.01.T01:CDS 45.0%
TTCATTCTTGAGCCCTTACC+TGG - Chr6:101726070-101726089 MsG0680035299.01.T01:CDS 45.0%
! CGGAGGAAATGATAACGAAC+TGG - Chr6:101726138-101726157 MsG0680035299.01.T01:CDS 45.0%
! TGAATGGAGTGTGTCATTGG+TGG - Chr6:101725792-101725811 MsG0680035299.01.T01:CDS 45.0%
!! AAGTTGGTGTGAAGGAGTCT+TGG - Chr6:101726038-101726057 MsG0680035299.01.T01:CDS 45.0%
!! TTTGGGTGAAGTTGGTGTGA+AGG - Chr6:101726030-101726049 MsG0680035299.01.T01:CDS 45.0%
ATACGTCGTCACGTGACACA+CGG + Chr6:101725679-101725698 None:intergenic 50.0%
GATCTGGCTGAGTCTGTTGT+AGG + Chr6:101725268-101725287 None:intergenic 50.0%
TAACCATGATCGGACGGATC+TGG + Chr6:101725284-101725303 None:intergenic 50.0%
TCTAACTGAGTAGGGCTTGG+AGG + Chr6:101725494-101725513 None:intergenic 50.0%
TGTGTCACGTGACGACGTAT+GGG - Chr6:101725679-101725698 MsG0680035299.01.T01:CDS 50.0%
ACTGAGTAGGGCTTGGAGGA+AGG + Chr6:101725490-101725509 None:intergenic 55.0%
CCCTACTCAGTTAGAGCCCT+CGG - Chr6:101725499-101725518 MsG0680035299.01.T01:CDS 55.0%
CTGGCTGAGTCTGTTGTAGG+AGG + Chr6:101725265-101725284 None:intergenic 55.0%
GTGTGTCACGTGACGACGTA+TGG - Chr6:101725678-101725697 MsG0680035299.01.T01:CDS 55.0%
! ACCGAGGGCTCTAACTGAGT+AGG + Chr6:101725503-101725522 None:intergenic 55.0%
! CCGAGGGCTCTAACTGAGTA+GGG + Chr6:101725502-101725521 None:intergenic 55.0%
! GGCTCTAACTGAGTAGGGCT+TGG + Chr6:101725497-101725516 None:intergenic 55.0%
CAGCCAGATCCGTCCGATCA+TGG - Chr6:101725278-101725297 MsG0680035299.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 101725056 101726165 101725056 ID=MsG0680035299.01;Name=MsG0680035299.01
Chr6 mRNA 101725056 101726165 101725056 ID=MsG0680035299.01.T01;Parent=MsG0680035299.01;Name=MsG0680035299.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|369
Chr6 exon 101725056 101726165 101725056 ID=MsG0680035299.01.T01:exon:10776;Parent=MsG0680035299.01.T01
Chr6 CDS 101725056 101726165 101725056 ID=MsG0680035299.01.T01:cds;Parent=MsG0680035299.01.T01
Gene Sequence

>MsG0680035299.01.T01

ATGGATTCTCTTTCAACTGAAAAGGTTAGCAATCATATTCACGAAGATATTGCATTTTCCATTCTCTCAAAATTGCCTCTAAAATCTTTGAAACGATTTACTTCAGTAAGTAAATCATGGTCTTGCTTATTTGAAAACCCTATTTTCATGAACATGTACTGCATGAGTTTCATATCTGATGCTTATGAGGACGATGGTTCATGTCTCCTCCTACAACAGACTCAGCCAGATCCGTCCGATCATGGTTATGTGTTGTATTTGCTTTCTGGCGAGACGCTTGAGAAGAAAGTCAAATTATGTCCGCCACCTCTGTTTAGAGAGATTAACAACCCTGGTTTTATATTGGGTCCCGTTATTAACGGAATCATGTGTCTTTGCCAAAATGGTACAACTGTTGTATTATGGAATCCAACTACCGACGAATTTAAGCTCCTTCCTCCAAGCCCTACTCAGTTAGAGCCCTCGGTACGTTATGAGATTGAACTGGAAAAGCTTCATGGATTTGGTTATGACCGTGTTAGAGATGACAATAACGTCATTAGACATGTACATTATGAATTAAATTTATCTGACTATCAAAATTATAGTGACTCTGAAGGTGATGATGAAAATGATAGTTACCGTGTGTCACGTGACGACGTATGGGAGATATATAGCTTAAGAAGTAACTCTTGGAGGAAACTTGATTTGGATATGCCTTGTGGTATGACGACTTTTGTAGGTGTCTATGTGTACTTGAATGGAGTGTGTCATTGGTGGACTTATGATGATGATTATGATAAAGAAGCATATTTGGTGTCATTTGACTTAAGCAAGGAGGTGTTTTGTAAAACACTCATGCCCTCAACTTTGATTGATTTTGATTCTGGATGTGCGATGAGACGCTTTAGATGTGTGATGAGACACTTGTCTTTATTAAATGACCACATTGCTTTGATCTCATATTATGAAAATGTTACTTTTCACATATCAATTTTGGGTGAAGTTGGTGTGAAGGAGTCTTGGACCAAACTCTTCATTCTTGAGCCCTTACCTGGCATTCATCTTCCTATTGGAGAGGGTAAGAATGGGGATTTATTCTTCGGAGGAAATGATAACGAACTGGTTTGA
Protein sequence

>MsG0680035299.01.T01

MDSLSTEKVSNHIHEDIAFSILSKLPLKSLKRFTSVSKSWSCLFENPIFMNMYCMSFISDAYEDDGSCLLLQQTQPDPSDHGYVLYLLSGETLEKKVKLCPPPLFREINNPGFILGPVINGIMCLCQNGTTVVLWNPTTDEFKLLPPSPTQLEPSVRYEIELEKLHGFGYDRVRDDNNVIRHVHYELNLSDYQNYSDSEGDDENDSYRVSRDDVWEIYSLRSNSWRKLDLDMPCGMTTFVGVYVYLNGVCHWWTYDDDYDKEAYLVSFDLSKEVFCKTLMPSTLIDFDSGCAMRRFRCVMRHLSLLNDHIALISYYENVTFHISILGEVGVKESWTKLFILEPLPGIHLPIGEGKNGDLFFGGNDNELV*