AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034648.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034648.01.T01 MTR_6g079810 57.500 280 107 6 114 382 118 396 2.71e-103 313
MsG0680034648.01.T01 MTR_6g070880 80.556 180 30 2 112 286 82 261 3.44e-99 296
MsG0680034648.01.T01 MTR_6g071420 80.556 180 30 2 112 286 82 261 3.44e-99 296
MsG0680034648.01.T01 MTR_0134s0060 54.514 288 116 6 110 383 60 346 2.96e-98 299
MsG0680034648.01.T01 MTR_0054s0090 56.584 281 110 6 110 383 65 340 3.67e-98 298
MsG0680034648.01.T01 MTR_6g090250 56.081 296 104 7 113 382 62 357 8.65e-98 298
MsG0680034648.01.T01 MTR_0054s0100 55.516 281 115 6 110 383 65 342 4.27e-96 293
MsG0680034648.01.T01 MTR_4g028510 55.273 275 107 7 115 382 70 335 1.05e-94 291
MsG0680034648.01.T01 MTR_6g079770 55.017 289 115 6 110 384 65 352 6.57e-93 285
MsG0680034648.01.T01 MTR_6g078010 53.405 279 94 7 114 382 16 268 7.14e-92 280
MsG0680034648.01.T01 MTR_6g090180 53.791 277 118 5 115 383 98 372 1.81e-89 277
MsG0680034648.01.T01 MTR_4g130330 51.799 278 116 7 114 382 55 323 1.70e-84 263
MsG0680034648.01.T01 MTR_4g028660 52.000 275 118 6 113 382 67 332 3.08e-83 259
MsG0680034648.01.T01 MTR_4g027450 52.000 275 118 6 113 382 67 332 3.08e-83 259
MsG0680034648.01.T01 MTR_6g086825 50.709 282 120 7 114 383 120 394 1.80e-82 259
MsG0680034648.01.T01 MTR_4g028680 52.536 276 116 8 113 382 67 333 1.67e-81 255
MsG0680034648.01.T01 MTR_4g028750 50.362 276 120 8 113 382 67 331 2.77e-79 249
MsG0680034648.01.T01 MTR_6g080680 50.182 275 115 6 113 382 71 328 6.49e-79 248
MsG0680034648.01.T01 MTR_7g023800 47.636 275 98 4 112 382 12 244 5.22e-78 243
MsG0680034648.01.T01 MTR_6g079790 52.941 255 91 7 145 383 2 243 2.79e-76 239
MsG0680034648.01.T01 MTR_6g478230 47.635 296 109 8 109 383 71 341 1.01e-75 241
MsG0680034648.01.T01 MTR_7g104710 50.000 266 78 7 110 364 65 286 2.55e-72 229
MsG0680034648.01.T01 MTR_6g087620 48.047 256 92 5 133 382 1 221 1.05e-68 218
MsG0680034648.01.T01 MTR_0129s0070 46.886 273 128 8 117 383 69 330 1.05e-59 199
MsG0680034648.01.T01 MTR_2g021800 45.318 267 123 9 130 382 94 351 5.48e-58 195
MsG0680034648.01.T01 MTR_1g007410 44.170 283 130 12 114 383 72 339 1.73e-57 193
MsG0680034648.01.T01 MTR_2g022000 42.517 294 135 10 114 382 66 350 2.29e-57 194
MsG0680034648.01.T01 MTR_5g097220 44.330 291 130 12 112 382 61 339 2.64e-57 193
MsG0680034648.01.T01 MTR_8g063440 43.478 276 130 9 114 383 62 317 3.82e-57 192
MsG0680034648.01.T01 MTR_0129s0120 45.956 272 130 8 117 382 69 329 5.00e-57 192
MsG0680034648.01.T01 MTR_0129s0050 41.837 294 136 8 117 386 64 346 2.57e-53 182
MsG0680034648.01.T01 MTR_2g038680 40.956 293 136 11 114 383 66 344 5.05e-53 182
MsG0680034648.01.T01 MTR_6g090260 64.800 125 42 1 260 382 71 195 2.82e-52 175
MsG0680034648.01.T01 MTR_4g055820 40.141 284 144 7 114 382 64 336 2.09e-51 176
MsG0680034648.01.T01 MTR_7g069550 38.811 286 142 11 114 382 64 333 2.30e-51 177
MsG0680034648.01.T01 MTR_5g092850 40.283 283 139 11 116 383 66 333 4.11e-51 176
MsG0680034648.01.T01 MTR_7g017170 40.214 281 138 9 114 382 68 330 5.96e-51 176
MsG0680034648.01.T01 MTR_7g017130 40.214 281 138 9 114 382 68 330 7.28e-51 176
MsG0680034648.01.T01 MTR_5g074850 41.034 290 130 12 116 383 87 357 4.97e-50 181
MsG0680034648.01.T01 MTR_5g092860 40.940 298 126 12 109 388 46 311 1.60e-49 171
MsG0680034648.01.T01 MTR_8g012090 39.502 281 110 8 114 382 66 298 2.71e-49 170
MsG0680034648.01.T01 MTR_8g464770 41.135 282 125 11 114 383 62 314 2.87e-49 171
MsG0680034648.01.T01 MTR_5g074800 39.007 282 144 9 114 382 12 278 3.91e-49 169
MsG0680034648.01.T01 MTR_5g075370 41.115 287 137 14 116 383 60 333 9.85e-49 176
MsG0680034648.01.T01 MTR_2g021950 40.000 280 140 11 116 382 68 332 2.08e-48 169
MsG0680034648.01.T01 MTR_5g064700 39.344 305 143 13 111 382 9 304 1.47e-47 166
MsG0680034648.01.T01 MTR_5g097680 39.576 283 133 9 131 382 88 363 2.53e-47 167
MsG0680034648.01.T01 MTR_3g011120 40.784 255 120 11 133 382 85 313 3.11e-47 165
MsG0680034648.01.T01 MTR_2g104340 37.864 309 159 10 92 382 37 330 3.69e-47 166
MsG0680034648.01.T01 MTR_5g096630 38.976 254 144 4 133 382 92 338 6.95e-47 166
MsG0680034648.01.T01 MTR_2g021770 37.884 293 152 10 111 386 65 344 1.01e-45 162
MsG0680034648.01.T01 MTR_5g097350 39.583 288 132 12 114 386 66 326 1.13e-45 162
MsG0680034648.01.T01 MTR_5g037680 38.699 292 122 10 114 382 58 315 1.24e-45 163
MsG0680034648.01.T01 MTR_4g117550 41.392 273 119 9 117 384 72 308 7.77e-45 159
MsG0680034648.01.T01 MTR_4g102410 36.201 279 159 8 115 382 112 382 9.44e-45 160
MsG0680034648.01.T01 MTR_1g007430 39.223 283 140 10 109 382 40 299 1.58e-44 157
MsG0680034648.01.T01 MTR_7g079640 38.328 287 119 11 114 383 63 308 1.73e-44 158
MsG0680034648.01.T01 MTR_5g069390 38.908 293 137 12 114 382 76 350 3.24e-44 160
MsG0680034648.01.T01 MTR_8g064890 39.464 261 122 11 133 382 86 321 6.19e-44 157
MsG0680034648.01.T01 MTR_6g461660 39.510 286 140 11 114 384 69 336 6.74e-43 154
MsG0680034648.01.T01 MTR_0831s0010 37.370 289 136 13 106 382 99 354 1.29e-42 154
MsG0680034648.01.T01 MTR_5g097330 39.850 266 132 9 129 382 86 335 1.56e-42 154
MsG0680034648.01.T01 MTR_4g007940 36.986 292 143 15 113 382 3 275 3.55e-42 151
MsG0680034648.01.T01 MTR_8g039500 37.226 274 142 8 114 382 62 310 3.69e-42 151
MsG0680034648.01.T01 MTR_5g072060 37.943 282 130 10 114 382 56 305 8.01e-42 155
MsG0680034648.01.T01 MTR_8g041270 37.457 291 149 8 114 382 61 340 1.49e-41 151
MsG0680034648.01.T01 MTR_8g467670 37.838 259 125 12 133 384 85 314 3.45e-41 150
MsG0680034648.01.T01 MTR_6g465360 47.191 178 85 4 110 279 110 286 4.01e-41 147
MsG0680034648.01.T01 MTR_1g007450 39.721 287 137 13 114 382 61 329 5.17e-41 150
MsG0680034648.01.T01 MTR_5g076490 39.313 262 126 9 132 382 30 269 6.12e-41 148
MsG0680034648.01.T01 MTR_5g096900 37.500 280 126 11 114 372 62 313 1.04e-40 147
MsG0680034648.01.T01 MTR_8g013000 40.138 289 134 11 114 383 60 328 1.38e-40 149
MsG0680034648.01.T01 MTR_5g096910 37.363 273 129 10 124 382 80 324 2.90e-40 147
MsG0680034648.01.T01 MTR_2g104280 35.135 296 144 10 117 383 64 340 8.94e-40 146
MsG0680034648.01.T01 MTR_7g017040 38.328 287 140 12 115 384 67 333 4.46e-39 144
MsG0680034648.01.T01 MTR_2g066170 36.713 286 152 11 114 390 62 327 6.37e-39 144
MsG0680034648.01.T01 MTR_2g065860 36.594 276 152 9 114 382 62 321 7.64e-39 143
MsG0680034648.01.T01 MTR_4g014370 35.052 291 146 11 119 382 68 342 9.31e-39 144
MsG0680034648.01.T01 MTR_2g034700 39.051 274 124 11 117 382 69 307 2.51e-38 142
MsG0680034648.01.T01 MTR_5g059430 36.184 304 138 14 114 382 76 358 8.23e-38 141
MsG0680034648.01.T01 MTR_5g022850 37.548 261 138 9 133 383 41 286 1.18e-37 139
MsG0680034648.01.T01 MTR_4g094400 62.037 108 27 2 291 384 6 113 1.24e-37 132
MsG0680034648.01.T01 MTR_2g065840 35.125 279 151 10 114 382 62 320 6.83e-37 138
MsG0680034648.01.T01 MTR_1g050312 36.330 267 96 13 133 382 16 225 1.05e-36 135
MsG0680034648.01.T01 MTR_2g064950 36.928 306 136 17 102 383 51 323 2.22e-36 137
MsG0680034648.01.T01 MTR_3g018750 44.751 181 72 8 221 383 2 172 2.72e-36 133
MsG0680034648.01.T01 MTR_5g043605 37.597 258 123 11 134 382 45 273 6.34e-36 135
MsG0680034648.01.T01 MTR_5g024260 35.789 285 145 13 116 382 74 338 4.73e-35 134
MsG0680034648.01.T01 MTR_5g068490 36.100 241 118 7 142 382 8 212 5.21e-35 130
MsG0680034648.01.T01 MTR_8g046310 34.471 293 120 13 115 382 65 310 5.96e-35 132
MsG0680034648.01.T01 MTR_5g086590 38.235 204 101 6 181 382 12 192 7.70e-35 129
MsG0680034648.01.T01 MTR_1g053510 36.678 289 136 12 121 383 73 340 1.10e-34 132
MsG0680034648.01.T01 MTR_8g033000 34.694 294 152 12 117 383 17 297 1.12e-34 132
MsG0680034648.01.T01 MTR_8g033090 36.934 287 120 15 133 383 86 347 2.23e-34 132
MsG0680034648.01.T01 MTR_4g016000 41.584 202 82 7 187 382 2 173 2.54e-34 127
MsG0680034648.01.T01 MTR_2g066200 35.231 281 149 11 114 382 62 321 4.08e-34 130
MsG0680034648.01.T01 MTR_8g063330 32.770 296 157 13 114 391 64 335 6.90e-34 131
MsG0680034648.01.T01 MTR_8g063350 33.725 255 141 9 133 382 45 276 1.62e-33 128
MsG0680034648.01.T01 MTR_5g091140 37.262 263 118 10 133 383 122 349 2.59e-33 129
MsG0680034648.01.T01 MTR_7g016930 38.148 270 131 11 115 380 67 304 1.15e-32 125
MsG0680034648.01.T01 MTR_7g111700 34.495 287 133 9 114 382 50 299 2.66e-32 125
MsG0680034648.01.T01 MTR_8g033140 32.890 301 148 12 117 384 73 352 4.02e-32 125
MsG0680034648.01.T01 MTR_8g033110 35.172 290 119 14 135 383 88 349 4.05e-32 125
MsG0680034648.01.T01 MTR_1g098180 33.333 270 126 8 116 382 71 289 4.96e-32 124
MsG0680034648.01.T01 MTR_2g066150 36.861 274 121 13 116 382 64 292 8.72e-32 124
MsG0680034648.01.T01 MTR_6g004450 43.353 173 75 6 222 386 49 206 1.75e-31 120
MsG0680034648.01.T01 MTR_8g046200 32.013 303 128 13 130 382 80 354 1.86e-31 124
MsG0680034648.01.T01 MTR_8g032980 33.442 308 141 13 117 382 69 354 2.04e-30 121
MsG0680034648.01.T01 MTR_6g009350 41.573 178 83 7 213 382 1 165 1.46e-29 113
MsG0680034648.01.T01 MTR_5g097820 36.406 217 101 8 115 316 74 268 1.53e-29 115
MsG0680034648.01.T01 MTR_2g021920 42.045 176 83 6 222 382 37 208 1.27e-28 113
MsG0680034648.01.T01 MTR_5g094350 36.437 247 110 10 105 331 54 273 4.23e-28 112
MsG0680034648.01.T01 MTR_8g064790 33.333 255 101 12 131 382 82 270 7.60e-28 112
MsG0680034648.01.T01 MTR_8g018110 33.455 275 126 14 135 383 88 331 2.09e-27 112
MsG0680034648.01.T01 MTR_8g036970 42.958 142 72 3 241 382 124 256 3.00e-27 111
MsG0680034648.01.T01 MTR_8g063370 30.357 280 166 11 117 392 78 332 1.08e-26 110
MsG0680034648.01.T01 MTR_6g079730 59.036 83 32 1 302 382 1 83 1.38e-26 104
MsG0680034648.01.T01 MTR_7g017150 48.800 125 59 3 264 386 82 203 2.49e-26 107
MsG0680034648.01.T01 MTR_2g104260 33.333 222 123 6 117 323 64 275 3.11e-26 107
MsG0680034648.01.T01 MTR_8g063310 33.588 262 138 13 133 381 89 327 4.64e-26 108
MsG0680034648.01.T01 MTR_7g017120 48.000 125 60 3 264 386 81 202 1.13e-25 105
MsG0680034648.01.T01 MTR_5g023970 43.750 128 71 1 255 382 2 128 3.91e-25 101
MsG0680034648.01.T01 MTR_5g097850 47.934 121 52 3 269 382 63 179 3.23e-23 97.8
MsG0680034648.01.T01 MTR_8g046220 30.496 282 139 11 130 382 85 338 3.66e-23 100
MsG0680034648.01.T01 MTR_5g091150 32.407 216 95 7 141 355 19 184 6.56e-22 93.2
MsG0680034648.01.T01 MTR_5g098950 35.784 204 82 8 184 382 90 249 2.30e-21 93.2
MsG0680034648.01.T01 MTR_8g035690 35.106 188 87 8 222 383 58 236 6.70e-21 92.4
MsG0680034648.01.T01 MTR_7g101200 32.381 210 104 7 181 385 37 213 7.30e-21 90.9
MsG0680034648.01.T01 MTR_1g076810 34.392 189 103 6 114 296 68 241 7.71e-21 95.1
MsG0680034648.01.T01 MTR_4g014370 41.935 124 60 3 264 382 154 270 3.24e-20 91.3
MsG0680034648.01.T01 MTR_1g047080 30.453 243 125 12 117 352 17 222 1.76e-19 88.2
MsG0680034648.01.T01 MTR_7g019250 38.012 171 75 6 220 382 222 369 1.77e-19 90.5
MsG0680034648.01.T01 MTR_5g066420 47.917 96 39 3 295 382 1 93 5.86e-19 83.2
MsG0680034648.01.T01 MTR_1g050308 29.961 257 95 12 133 382 105 283 3.34e-18 85.5
MsG0680034648.01.T01 MTR_5g097540 39.669 121 64 4 264 383 97 209 4.68e-18 84.3
MsG0680034648.01.T01 MTR_5g037190 34.500 200 95 9 114 308 66 234 1.81e-17 81.6
MsG0680034648.01.T01 MTR_3g030620 42.453 106 56 2 283 383 11 116 7.22e-17 78.6
MsG0680034648.01.T01 MTR_1g115205 33.333 177 85 6 135 303 86 237 1.16e-16 79.3
MsG0680034648.01.T01 MTR_5g096050 48.515 101 37 3 295 382 1 99 1.78e-16 75.5
MsG0680034648.01.T01 MTR_2g026010 26.087 276 158 14 125 385 54 298 4.06e-16 79.7
MsG0680034648.01.T01 MTR_5g096920 46.591 88 43 2 295 382 1 84 1.06e-15 74.3
MsG0680034648.01.T01 MTR_8g073570 42.157 102 47 5 133 233 80 170 1.66e-15 74.3
MsG0680034648.01.T01 MTR_4g133170 25.328 229 147 8 164 390 89 295 3.00e-15 77.0
MsG0680034648.01.T01 MTR_2g025960 28.270 237 129 12 165 385 5 216 3.30e-15 76.3
MsG0680034648.01.T01 MTR_5g049560 35.862 145 59 6 114 236 14 146 6.15e-14 72.0
MsG0680034648.01.T01 MTR_5g057790 28.151 238 116 9 158 383 135 329 6.99e-14 73.2
MsG0680034648.01.T01 MTR_3g011100 28.030 264 151 12 133 391 303 532 7.74e-13 70.5
MsG0680034648.01.T01 MTR_2g022020 46.032 63 34 0 328 390 1 63 8.63e-13 65.1
MsG0680034648.01.T01 MTR_1g037540 25.424 236 132 9 164 385 127 332 2.49e-12 68.2
MsG0680034648.01.T01 MTR_2g021860 33.962 106 61 2 136 240 6 103 4.19e-12 63.9
MsG0680034648.01.T01 MTR_3g083010 24.390 246 151 8 152 383 96 320 8.12e-12 66.6
MsG0680034648.01.T01 MTR_5g057710 27.234 235 116 9 161 383 138 329 1.44e-11 65.9
MsG0680034648.01.T01 MTR_2g024110 24.126 286 180 14 115 392 43 299 1.56e-11 65.9
MsG0680034648.01.T01 MTR_1g068875 26.070 257 151 14 136 385 67 291 2.22e-11 65.5
MsG0680034648.01.T01 MTR_2g028140 26.050 238 137 10 165 385 107 322 4.29e-11 64.7
MsG0680034648.01.T01 MTR_2g426060 25.000 244 133 14 164 385 98 313 4.53e-11 64.3
MsG0680034648.01.T01 MTR_5g086780 50.000 64 32 0 320 383 123 186 6.69e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034648.01.T01 AT3G06240 23.659 317 181 13 82 381 83 355 2.71e-11 65.5
MsG0680034648.01.T01 AT4G12560 27.155 232 136 11 164 383 92 302 8.36e-11 63.5
MsG0680034648.01.T01 AT4G12560 27.155 232 136 11 164 383 92 302 8.36e-11 63.5
MsG0680034648.01.T01 AT4G12560 27.155 232 136 11 164 383 92 302 8.36e-11 63.5

Find 78 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATCTCCTTGATATTCA+TGG 0.261466 6:+92093836 None:intergenic
ACAAAATCCTTAACTTCATA+TGG 0.266402 6:+92095610 None:intergenic
GTAAACTTGGTGGTGTTAAA+TGG 0.267153 6:-92093328 MsG0680034648.01.T01:CDS
TATTGTGTTCAGTAACCTTT+AGG 0.267640 6:+92093989 None:intergenic
AATTTGATTGTTTAGGTAGA+TGG 0.276288 6:+92095672 None:intergenic
ATAACTTGTGTTCAAGGATT+TGG 0.278427 6:-92095574 MsG0680034648.01.T01:CDS
GAGGAAGGAGATTAAATGTT+TGG 0.291112 6:+92093785 None:intergenic
ATGTTGAGATGTCGTCTTCT+TGG 0.304778 6:-92093522 MsG0680034648.01.T01:CDS
ATCATATATGTTTGAGGGTA+TGG 0.308018 6:+92093375 None:intergenic
TATTCTCGTCTTCATGGATT+TGG 0.312958 6:-92093703 MsG0680034648.01.T01:CDS
TAGAAAGTTTGTGAAGTATC+AGG 0.334556 6:-92096108 MsG0680034648.01.T01:CDS
CCTGTTATAACTTGTGTTCA+AGG 0.334663 6:-92095580 MsG0680034648.01.T01:CDS
AGATTAAATGTTTGGGTAGT+TGG 0.335322 6:+92093793 None:intergenic
TCAAACATATATGATTGTTT+TGG 0.337945 6:-92093367 MsG0680034648.01.T01:CDS
ACAAAACCCTTAGCTTCATC+TGG 0.343322 6:+92093739 None:intergenic
CTAAATATATACTTTGTTCA+TGG 0.357190 6:+92095470 None:intergenic
TTGATGACCTTGAAGAAAAC+TGG 0.359088 6:-92093606 MsG0680034648.01.T01:CDS
TGGTCCAACGTGACCATCTT+TGG 0.360765 6:+92093444 None:intergenic
GGTTGAAAGAAATTAATTCT+TGG 0.361726 6:-92093585 MsG0680034648.01.T01:CDS
TCATCAAAGTATTGATATAA+TGG 0.365499 6:+92093622 None:intergenic
AGGAAGGAATTTGATTGTTT+AGG 0.367374 6:+92095665 None:intergenic
GTTGAAAGAAATTAATTCTT+GGG 0.370158 6:-92093584 MsG0680034648.01.T01:CDS
GATTAAATGTTTGGGTAGTT+GGG 0.378352 6:+92093794 None:intergenic
AACAAAGTATATATTTAGAT+TGG 0.384337 6:-92095465 MsG0680034648.01.T01:intron
CAACACAAATGTGAAGAGTT+TGG 0.392088 6:+92093219 None:intergenic
TGTTGAGATGTCGTCTTCTT+GGG 0.394053 6:-92093521 MsG0680034648.01.T01:CDS
CCATGTTATAAACGAGAATA+AGG 0.401265 6:-92095545 MsG0680034648.01.T01:CDS
AGGAAGGAGATTAAATGTTT+GGG 0.407390 6:+92093786 None:intergenic
GTCTTCTTGGGAGTGTATTG+AGG 0.411408 6:-92093509 MsG0680034648.01.T01:CDS
ATCCATCCCATATGAAGTTA+AGG 0.418912 6:-92095617 MsG0680034648.01.T01:CDS
TTTGGGTGAACTTGGTATGA+AGG 0.419221 6:-92093251 MsG0680034648.01.T01:CDS
TTCTCCACGATTTGCTTCTT+AGG 0.428819 6:+92093551 None:intergenic
CCTTGAACACAAGTTATAAC+AGG 0.429414 6:+92095580 None:intergenic
TAAACTTGGTGGTGTTAAAT+GGG 0.435566 6:-92093327 MsG0680034648.01.T01:CDS
TGGTCACGTTGGACCATGTT+TGG 0.436026 6:-92093437 MsG0680034648.01.T01:CDS
CCATGTTATAAATGACTATA+CGG 0.437982 6:-92093674 MsG0680034648.01.T01:CDS
ATTTGATTGTTTAGGTAGAT+GGG 0.442214 6:+92095673 None:intergenic
TAAATTAAACTGGGTAAACT+TGG 0.454701 6:-92093341 MsG0680034648.01.T01:CDS
CAAACTCTTCACATTTGTGT+TGG 0.467460 6:-92093218 MsG0680034648.01.T01:CDS
CAAAATCCTTAACTTCATAT+GGG 0.469895 6:+92095611 None:intergenic
ATGTTATCCCTTTCAAGAAA+AGG 0.472969 6:+92093901 None:intergenic
CCTTATTCTCGTTTATAACA+TGG 0.490544 6:+92095545 None:intergenic
ACATGGATGGAGTGTGTCAT+TGG 0.492746 6:-92093474 MsG0680034648.01.T01:CDS
ATCTATCCCAGATGAAGCTA+AGG 0.496903 6:-92093746 MsG0680034648.01.T01:CDS
TCTTCTTGGGAGTGTATTGA+GGG 0.497152 6:-92093508 MsG0680034648.01.T01:CDS
AAAACAATCATATATGTTTG+AGG 0.501567 6:+92093369 None:intergenic
ATCCTTAACTTCATATGGGA+TGG 0.509866 6:+92095615 None:intergenic
TGAGGGCACCCGAGTCTACA+TGG 0.514060 6:-92093491 MsG0680034648.01.T01:CDS
AAACAATCATATATGTTTGA+GGG 0.514225 6:+92093370 None:intergenic
CTGAGATGACTCAACCTCAC+TGG 0.516885 6:+92095642 None:intergenic
CACAGTTGTTCTTATTACGA+TGG 0.520664 6:-92094024 MsG0680034648.01.T01:intron
TGGAGCATCTCTCCTCCTAA+AGG 0.527936 6:-92094004 MsG0680034648.01.T01:CDS
ATTAAACTGGGTAAACTTGG+TGG 0.531741 6:-92093338 MsG0680034648.01.T01:CDS
GAATCATCCGGTGAATACTC+TGG 0.532367 6:-92095496 MsG0680034648.01.T01:CDS
TCATATATGTTTGAGGGTAT+GGG 0.536104 6:+92093376 None:intergenic
CATGTTTGTATAGAATCATC+CGG 0.544758 6:-92095508 MsG0680034648.01.T01:CDS
TGTGTTCAGTAACCTTTAGG+AGG 0.565284 6:+92093992 None:intergenic
CCGTATAGTCATTTATAACA+TGG 0.568707 6:+92093674 None:intergenic
TTGTGCTGTCAAATTCTGCA+TGG 0.573638 6:+92096175 None:intergenic
CATTGGTTGTGTACCAAAGA+TGG 0.573672 6:-92093457 MsG0680034648.01.T01:CDS
CAAAACCCTTAGCTTCATCT+GGG 0.574882 6:+92093740 None:intergenic
GGCACCCGAGTCTACATGGA+TGG 0.576024 6:-92093487 MsG0680034648.01.T01:CDS
ACACTCCATCCATGTAGACT+CGG 0.583518 6:+92093482 None:intergenic
GACTCAACCTCACTGGAGGA+AGG 0.589217 6:+92095649 None:intergenic
ACTCAATTTCACTAGGAGGA+AGG 0.595376 6:+92093770 None:intergenic
CACTCCATCCATGTAGACTC+GGG 0.624992 6:+92093483 None:intergenic
AACTTGGTATGAAGGAATCG+TGG 0.635436 6:-92093243 MsG0680034648.01.T01:CDS
GATGACTCAATTTCACTAGG+AGG 0.638841 6:+92093766 None:intergenic
TCTATCCCAGATGAAGCTAA+GGG 0.639398 6:-92093745 MsG0680034648.01.T01:CDS
ATGGTCGCCAGAGTATTCAC+CGG 0.644721 6:+92095489 None:intergenic
AGATGACTCAACCTCACTGG+AGG 0.644933 6:+92095645 None:intergenic
ATAGATGACTCAATTTCACT+AGG 0.649841 6:+92093763 None:intergenic
AGGTGAAATGATACCAAACA+TGG 0.661602 6:+92093424 None:intergenic
TCAAATTCCTTCCTCCAGTG+AGG 0.662596 6:-92095656 MsG0680034648.01.T01:CDS
ATAGCCTAAGAAGCAAATCG+TGG 0.673786 6:-92093555 MsG0680034648.01.T01:CDS
TGTGAAGTATCAGGCAACAG+TGG 0.676770 6:-92096099 MsG0680034648.01.T01:CDS
TGCAGAATTTGACAGCACAA+AGG 0.687953 6:-92096172 MsG0680034648.01.T01:CDS
TGTACCAAAGATGGTCACGT+TGG 0.692266 6:-92093448 MsG0680034648.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATGAAAAAATTGTATTA+TGG - Chr6:92095543-92095562 MsG0680034648.01.T01:CDS 10.0%
!! AAAAAATACAAGTACATAAA+TGG + Chr6:92093599-92093618 None:intergenic 15.0%
!! AACAAAGTATATATTTAGAT+TGG - Chr6:92093897-92093916 MsG0680034648.01.T01:CDS 15.0%
!! AATCGATTAAAATATTTAAG+AGG + Chr6:92095234-92095253 None:intergenic 15.0%
!! TAGAGGAAATTAATTTATAT+AGG - Chr6:92093921-92093940 MsG0680034648.01.T01:CDS 15.0%
!!! TTTTGGTATTAAATTAAACT+GGG - Chr6:92096012-92096031 MsG0680034648.01.T01:intron 15.0%
!! AAAACAATCATATATGTTTG+AGG + Chr6:92095996-92096015 None:intergenic 20.0%
!! AAACAATCATATATGTTTGA+GGG + Chr6:92095995-92096014 None:intergenic 20.0%
!! AATTGTAAAAGAATTTAGCA+CGG + Chr6:92095316-92095335 None:intergenic 20.0%
!! ATGATATTAAATCAAAGCAA+TGG + Chr6:92094189-92094208 None:intergenic 20.0%
!! CTAAATATATACTTTGTTCA+TGG + Chr6:92093895-92093914 None:intergenic 20.0%
!! GAATACAATGATGTATTTAT+AGG + Chr6:92093516-92093535 None:intergenic 20.0%
!! GTTGAAAGAAATTAATTCTT+GGG - Chr6:92095778-92095797 MsG0680034648.01.T01:intron 20.0%
!! TTACAGGATAATAAATTTCA+AGG - Chr6:92094405-92094424 MsG0680034648.01.T01:intron 20.0%
!!! GTTTTGGTATTAAATTAAAC+TGG - Chr6:92096011-92096030 MsG0680034648.01.T01:intron 20.0%
!!! TATATATTTAGATTGGTTAG+AGG - Chr6:92093904-92093923 MsG0680034648.01.T01:CDS 20.0%
!!! TCAAACATATATGATTGTTT+TGG - Chr6:92095995-92096014 MsG0680034648.01.T01:intron 20.0%
!!! TCATCAAAGTATTGATATAA+TGG + Chr6:92095743-92095762 None:intergenic 20.0%
!!! TGTACTTGTATTTTTTGTTT+TGG - Chr6:92093603-92093622 MsG0680034648.01.T01:CDS 20.0%
! AAAACAATCGTCTATGTTTA+AGG + Chr6:92094123-92094142 None:intergenic 25.0%
! AAACAATCGTCTATGTTTAA+GGG + Chr6:92094122-92094141 None:intergenic 25.0%
! AACTTGAAAATAAATTGACG+CGG + Chr6:92093440-92093459 None:intergenic 25.0%
! AATTTGATTGTTTAGGTAGA+TGG + Chr6:92093693-92093712 None:intergenic 25.0%
! ACAAAATCCTTAACTTCATA+TGG + Chr6:92093755-92093774 None:intergenic 25.0%
! ACATCATTGTATTCTCTTTA+CGG - Chr6:92093522-92093541 MsG0680034648.01.T01:CDS 25.0%
! ATTTGATTGTTTAGGTAGAT+GGG + Chr6:92093692-92093711 None:intergenic 25.0%
! CAAAATCCTTAACTTCATAT+GGG + Chr6:92093754-92093773 None:intergenic 25.0%
! CCATGTTATAAATGACTATA+CGG - Chr6:92095688-92095707 MsG0680034648.01.T01:intron 25.0%
! GGCAATATCATTATGTATAT+AGG + Chr6:92093313-92093332 None:intergenic 25.0%
! GGTTGAAAGAAATTAATTCT+TGG - Chr6:92095777-92095796 MsG0680034648.01.T01:intron 25.0%
! TAAATTAAACTGGGTAAACT+TGG - Chr6:92096021-92096040 MsG0680034648.01.T01:intron 25.0%
! TATAGGATTCATTAACCTTT+AGG + Chr6:92093499-92093518 None:intergenic 25.0%
! TGAAATTGAGAAAGATTCTA+GGG - Chr6:92094699-92094718 MsG0680034648.01.T01:intron 25.0%
! TGCTATATCATCTGATATAT+AGG + Chr6:92095190-92095209 None:intergenic 25.0%
! TTCTTCATAAGAAAAGATAG+AGG - Chr6:92094316-92094335 MsG0680034648.01.T01:intron 25.0%
! TTGAAGATTCAGTTTATGAT+GGG + Chr6:92094915-92094934 None:intergenic 25.0%
!! AGTGATGGTTTTCAAATAAA+AGG + Chr6:92095281-92095300 None:intergenic 25.0%
!! GTGATGGTTTTCAAATAAAA+GGG + Chr6:92095280-92095299 None:intergenic 25.0%
!! TTTTCAAATAAAATCGACCA+TGG + Chr6:92093396-92093415 None:intergenic 25.0%
!!! AACATTCATGTTTTTGGTTT+TGG - Chr6:92095479-92095498 MsG0680034648.01.T01:CDS 25.0%
!!! ACTTGTATTTTTTGTTTTGG+TGG - Chr6:92093606-92093625 MsG0680034648.01.T01:CDS 25.0%
!!! CATCTTTGAAGAAATTTTGA+AGG + Chr6:92095082-92095101 None:intergenic 25.0%
!!! GAAGTTTTGTATTCTTTTTC+TGG - Chr6:92095398-92095417 MsG0680034648.01.T01:intron 25.0%
!!! GTACATAAATGGTTTTGAAA+TGG + Chr6:92093588-92093607 None:intergenic 25.0%
!!! TAAACTATTTTTCATTCCCT+AGG - Chr6:92095007-92095026 MsG0680034648.01.T01:intron 25.0%
!!! TAATGACACATTTTGTTTCA+AGG - Chr6:92093632-92093651 MsG0680034648.01.T01:CDS 25.0%
!!! TGAAATAGTGTTGATAACTA+TGG - Chr6:92094724-92094743 MsG0680034648.01.T01:intron 25.0%
!!! TTATTTTATTCTCGTCTTCA+TGG - Chr6:92095653-92095672 MsG0680034648.01.T01:CDS 25.0%
!!! TTGAAGAAATTTTGAAGGTA+GGG + Chr6:92095077-92095096 None:intergenic 25.0%
!!! TTGATAACTATGGTGTTTTT+GGG - Chr6:92094734-92094753 MsG0680034648.01.T01:intron 25.0%
!!! TTTGAAGAAATTTTGAAGGT+AGG + Chr6:92095078-92095097 None:intergenic 25.0%
!!! TTTGGTTTTGGTAGTATTAA+TGG - Chr6:92095491-92095510 MsG0680034648.01.T01:CDS 25.0%
AAAATTGTGAGAAAAGACAG+AGG - Chr6:92094640-92094659 MsG0680034648.01.T01:intron 30.0%
AATCGCTTCAAAGATTTAAG+AGG + Chr6:92093357-92093376 None:intergenic 30.0%
AATGAGTGGCAAAAATTATC+GGG - Chr6:92094563-92094582 MsG0680034648.01.T01:intron 30.0%
ACTCACTCCTTAGAATTATT+CGG + Chr6:92094816-92094835 None:intergenic 30.0%
ACTCGTCCACAATAAATAAA+AGG + Chr6:92094971-92094990 None:intergenic 30.0%
AGATTAAATGTTTGGGTAGT+TGG + Chr6:92095572-92095591 None:intergenic 30.0%
AGGAAGGAATTTGATTGTTT+AGG + Chr6:92093700-92093719 None:intergenic 30.0%
AGGAAGGAGATTAAATGTTT+GGG + Chr6:92095579-92095598 None:intergenic 30.0%
ATAACCTAAGAAGTAACTCA+TGG - Chr6:92093950-92093969 MsG0680034648.01.T01:CDS 30.0%
ATAGATGACTCAATTTCACT+AGG + Chr6:92095602-92095621 None:intergenic 30.0%
ATCATATATGTTTGAGGGTA+TGG + Chr6:92095990-92096009 None:intergenic 30.0%
ATGTTATCCCTTTCAAGAAA+AGG + Chr6:92095464-92095483 None:intergenic 30.0%
ATTTAAGAGGCAACTTTGAT+AGG + Chr6:92093344-92093363 None:intergenic 30.0%
CATAATCTCCTTGATATTCA+TGG + Chr6:92095529-92095548 None:intergenic 30.0%
CATGTTTGTATAGAATCATC+CGG - Chr6:92093854-92093873 MsG0680034648.01.T01:CDS 30.0%
CCATGTTATAAACGAGAATA+AGG - Chr6:92093817-92093836 MsG0680034648.01.T01:CDS 30.0%
CCGTATAGTCATTTATAACA+TGG + Chr6:92095691-92095710 None:intergenic 30.0%
CCTTATTCTCGTTTATAACA+TGG + Chr6:92093820-92093839 None:intergenic 30.0%
GAAAAGAGATTATGAATGAG+TGG - Chr6:92094549-92094568 MsG0680034648.01.T01:intron 30.0%
GAATGAGTGGCAAAAATTAT+CGG - Chr6:92094562-92094581 MsG0680034648.01.T01:intron 30.0%
GATTAAATGTTTGGGTAGTT+GGG + Chr6:92095571-92095590 None:intergenic 30.0%
GTGAAATTGAGAAAGATTCT+AGG - Chr6:92094698-92094717 MsG0680034648.01.T01:intron 30.0%
GTTGAAGATTCAGTTTATGA+TGG + Chr6:92094916-92094935 None:intergenic 30.0%
TAAACCAAAGTGGATAAACT+TGG - Chr6:92094148-92094167 MsG0680034648.01.T01:intron 30.0%
TATTGTGTTCAGTAACCTTT+AGG + Chr6:92095376-92095395 None:intergenic 30.0%
TATTGTTACGTTTGAGGAAT+AGG - Chr6:92094432-92094451 MsG0680034648.01.T01:intron 30.0%
TCCACAATAAATAAAAGGAG+AGG + Chr6:92094966-92094985 None:intergenic 30.0%
TTTGAATACCCAAATGATTG+AGG - Chr6:92094354-92094373 MsG0680034648.01.T01:intron 30.0%
! AAGCAGAGAATTTTCATTAC+AGG - Chr6:92094389-92094408 MsG0680034648.01.T01:intron 30.0%
! AATAATTCTAAGGAGTGAGT+TGG - Chr6:92094816-92094835 MsG0680034648.01.T01:intron 30.0%
! ACTTTTCACGTAGGAATTTT+GGG - Chr6:92096094-92096113 MsG0680034648.01.T01:CDS 30.0%
! AGGGATAACATTCATGTTTT+TGG - Chr6:92095473-92095492 MsG0680034648.01.T01:CDS 30.0%
! ATAACTTGTGTTCAAGGATT+TGG - Chr6:92093788-92093807 MsG0680034648.01.T01:CDS 30.0%
! CTCATATCCTTTTCTTGAAA+GGG - Chr6:92095454-92095473 MsG0680034648.01.T01:intron 30.0%
! GGAACATTTTCATGAATTGA+TGG + Chr6:92093419-92093438 None:intergenic 30.0%
! TACTTTTCACGTAGGAATTT+TGG - Chr6:92096093-92096112 MsG0680034648.01.T01:CDS 30.0%
! TAGAAAGTTTGTGAAGTATC+AGG - Chr6:92093254-92093273 MsG0680034648.01.T01:CDS 30.0%
! TCATATATGTTTGAGGGTAT+GGG + Chr6:92095989-92096008 None:intergenic 30.0%
! TCTCATATCCTTTTCTTGAA+AGG - Chr6:92095453-92095472 MsG0680034648.01.T01:intron 30.0%
! TTTTGTCTCCATGAATATCA+AGG - Chr6:92095518-92095537 MsG0680034648.01.T01:CDS 30.0%
!! AAATTTTGAAGGTAGGGTTT+AGG + Chr6:92095071-92095090 None:intergenic 30.0%
!! AATTTTGAAGGTAGGGTTTA+GGG + Chr6:92095070-92095089 None:intergenic 30.0%
!! ATAAACTTGGTGGTGTTAAA+TGG - Chr6:92094161-92094180 MsG0680034648.01.T01:intron 30.0%
!! GTTTTGATGTTAAACCAAAG+TGG - Chr6:92094138-92094157 MsG0680034648.01.T01:intron 30.0%
!! TAAACTTGGTGGTGTTAAAT+GGG - Chr6:92094162-92094181 MsG0680034648.01.T01:intron 30.0%
!! TCCTCTCCTTTTATTTATTG+TGG - Chr6:92094962-92094981 MsG0680034648.01.T01:intron 30.0%
!!! GTTGATAACTATGGTGTTTT+TGG - Chr6:92094733-92094752 MsG0680034648.01.T01:intron 30.0%
AGGATTCATTAACCTTTAGG+TGG + Chr6:92093496-92093515 None:intergenic 35.0%
AGGTGAAATGATACCAAACA+TGG + Chr6:92095941-92095960 None:intergenic 35.0%
ATAACCAAACTCTTCACTGT+TGG - Chr6:92094241-92094260 MsG0680034648.01.T01:intron 35.0%
ATACCAAACATGTTCAACTG+TGG + Chr6:92094071-92094090 None:intergenic 35.0%
ATCCATCCCATATGAAGTTA+AGG - Chr6:92093745-92093764 MsG0680034648.01.T01:CDS 35.0%
ATCCTTAACTTCATATGGGA+TGG + Chr6:92093750-92093769 None:intergenic 35.0%
ATCGTCTATGTTTAAGGGTA+TGG + Chr6:92094117-92094136 None:intergenic 35.0%
ATTAAACTGGGTAAACTTGG+TGG - Chr6:92096024-92096043 MsG0680034648.01.T01:intron 35.0%
CAAACTCTTCACATTTGTGT+TGG - Chr6:92096144-92096163 MsG0680034648.01.T01:CDS 35.0%
CAACACAAATGTGAAGAGTT+TGG + Chr6:92096146-92096165 None:intergenic 35.0%
CACAGTTGTTCTTATTACGA+TGG - Chr6:92095338-92095357 MsG0680034648.01.T01:intron 35.0%
CCTTGAACACAAGTTATAAC+AGG + Chr6:92093785-92093804 None:intergenic 35.0%
CGAAAAACACATCATTGCTT+AGG + Chr6:92095961-92095980 None:intergenic 35.0%
CTGAAATTATTTGGGCTTCA+GGG - Chr6:92094772-92094791 MsG0680034648.01.T01:intron 35.0%
GAAGACGATGATTGTTTATG+TGG - Chr6:92094524-92094543 MsG0680034648.01.T01:intron 35.0%
GAGGAAGGAGATTAAATGTT+TGG + Chr6:92095580-92095599 None:intergenic 35.0%
GGGAAAGGCTGAAATTATTT+GGG - Chr6:92094764-92094783 MsG0680034648.01.T01:intron 35.0%
GTCTACACTAATACAACCTA+GGG + Chr6:92095026-92095045 None:intergenic 35.0%
GTGAAGAAGAAGAGATATCT+GGG - Chr6:92095141-92095160 MsG0680034648.01.T01:intron 35.0%
TATTCTCGTCTTCATGGATT+TGG - Chr6:92095659-92095678 MsG0680034648.01.T01:CDS 35.0%
TGGGAAAGGCTGAAATTATT+TGG - Chr6:92094763-92094782 MsG0680034648.01.T01:intron 35.0%
TGTATTCTCTTTACGGTAAG+AGG - Chr6:92093529-92093548 MsG0680034648.01.T01:CDS 35.0%
TGTCTACACTAATACAACCT+AGG + Chr6:92095027-92095046 None:intergenic 35.0%
TTACGTTTGAGGAATAGGTT+AGG - Chr6:92094437-92094456 MsG0680034648.01.T01:intron 35.0%
TTCAATGTGTTCGCAAATCA+TGG - Chr6:92095253-92095272 MsG0680034648.01.T01:intron 35.0%
! CCTGTTATAACTTGTGTTCA+AGG - Chr6:92093782-92093801 MsG0680034648.01.T01:CDS 35.0%
! CTTTCAACCAGTTTTCTTCA+AGG + Chr6:92095766-92095785 None:intergenic 35.0%
! TCGTCTATGTTTAAGGGTAT+GGG + Chr6:92094116-92094135 None:intergenic 35.0%
! TCGTCTTCTAACTTTTCTGA+GGG - Chr6:92093994-92094013 MsG0680034648.01.T01:CDS 35.0%
! TTACACAATTTTCCTCAGCA+GGG + Chr6:92094620-92094639 None:intergenic 35.0%
! TTGATGACCTTGAAGAAAAC+TGG - Chr6:92095756-92095775 MsG0680034648.01.T01:intron 35.0%
! TTTACACAATTTTCCTCAGC+AGG + Chr6:92094621-92094640 None:intergenic 35.0%
!! AAGATGACTACTTTTCACGT+AGG - Chr6:92096085-92096104 MsG0680034648.01.T01:intron 35.0%
!! CAGTTTATGATGGGTTTGTA+CGG + Chr6:92094906-92094925 None:intergenic 35.0%
!! GGAAAGTATTGTTACGTTTG+AGG - Chr6:92094426-92094445 MsG0680034648.01.T01:intron 35.0%
!! GTAAACTTGGTGGTGTTAAA+TGG - Chr6:92096034-92096053 MsG0680034648.01.T01:intron 35.0%
!! TGTATTCTTTTTCTGGTGAG+AGG - Chr6:92095405-92095424 MsG0680034648.01.T01:intron 35.0%
!!! AACTATGGTGTTTTTGGGTT+GGG - Chr6:92094739-92094758 MsG0680034648.01.T01:intron 35.0%
!!! TAACTATGGTGTTTTTGGGT+TGG - Chr6:92094738-92094757 MsG0680034648.01.T01:intron 35.0%
AACCAAGCTCCTCAATCATT+TGG + Chr6:92094366-92094385 None:intergenic 40.0%
AACTTGGTATGAAGGAATCG+TGG - Chr6:92096119-92096138 MsG0680034648.01.T01:CDS 40.0%
AAGAGGCAACTTTGATAGGA+TGG + Chr6:92093340-92093359 None:intergenic 40.0%
AAGCTCTGCTCATCTTGTAT+TGG - Chr6:92095119-92095138 MsG0680034648.01.T01:intron 40.0%
ACAAAACCCTTAGCTTCATC+TGG + Chr6:92095626-92095645 None:intergenic 40.0%
ACCAAAGTGGATAAACTTGG+TGG - Chr6:92094151-92094170 MsG0680034648.01.T01:intron 40.0%
ACCAAGCTCCTCAATCATTT+GGG + Chr6:92094365-92094384 None:intergenic 40.0%
ACCACCAAGTTTATCCACTT+TGG + Chr6:92094155-92094174 None:intergenic 40.0%
ACTCAATTTCACTAGGAGGA+AGG + Chr6:92095595-92095614 None:intergenic 40.0%
ATACAAGATGAGCAGAGCTT+TGG + Chr6:92095119-92095138 None:intergenic 40.0%
ATAGCCTAAGAAGCAAATCG+TGG - Chr6:92095807-92095826 MsG0680034648.01.T01:intron 40.0%
ATCTATCCCAGATGAAGCTA+AGG - Chr6:92095616-92095635 MsG0680034648.01.T01:CDS 40.0%
ATGTTGAGATGTCGTCTTCT+TGG - Chr6:92095840-92095859 MsG0680034648.01.T01:intron 40.0%
CAAAACCCTTAGCTTCATCT+GGG + Chr6:92095625-92095644 None:intergenic 40.0%
CAACTTTGATAGGATGGAGA+TGG + Chr6:92093334-92093353 None:intergenic 40.0%
CGGAACATGTTCTTAAGTGA+TGG + Chr6:92095296-92095315 None:intergenic 40.0%
CTATTGAAGTGGGGACAAAA+GGG - Chr6:92094287-92094306 MsG0680034648.01.T01:intron 40.0%
CTCTCCATGAGTTACTTCTT+AGG + Chr6:92093957-92093976 None:intergenic 40.0%
GATGACTCAATTTCACTAGG+AGG + Chr6:92095599-92095618 None:intergenic 40.0%
GCTGAAATTATTTGGGCTTC+AGG - Chr6:92094771-92094790 MsG0680034648.01.T01:intron 40.0%
GGAACTCATGTTAACATGGA+TGG - Chr6:92094015-92094034 MsG0680034648.01.T01:CDS 40.0%
GGTGAAGAAGAAGAGATATC+TGG - Chr6:92095140-92095159 MsG0680034648.01.T01:intron 40.0%
TAAAAGGAGAGGATCAAACC+TGG + Chr6:92094955-92094974 None:intergenic 40.0%
TAACATGTGATTGCAGTCCA+TGG - Chr6:92093376-92093395 MsG0680034648.01.T01:CDS 40.0%
TATTGAAGTGGGGACAAAAG+GGG - Chr6:92094288-92094307 MsG0680034648.01.T01:intron 40.0%
TCACCACAGTTGAACATGTT+TGG - Chr6:92094065-92094084 MsG0680034648.01.T01:intron 40.0%
TCTATCCCAGATGAAGCTAA+GGG - Chr6:92095617-92095636 MsG0680034648.01.T01:CDS 40.0%
TGAGGGAACTCATGTTAACA+TGG - Chr6:92094011-92094030 MsG0680034648.01.T01:CDS 40.0%
TGCAGAATTTGACAGCACAA+AGG - Chr6:92093190-92093209 MsG0680034648.01.T01:CDS 40.0%
TGTGTTCAGTAACCTTTAGG+AGG + Chr6:92095373-92095392 None:intergenic 40.0%
TGTTGAGATGTCGTCTTCTT+GGG - Chr6:92095841-92095860 MsG0680034648.01.T01:intron 40.0%
TTTGGGTGAACTTGGTATGA+AGG - Chr6:92096111-92096130 MsG0680034648.01.T01:CDS 40.0%
! AGGTTGGCCGAATAATTCTA+AGG - Chr6:92094806-92094825 MsG0680034648.01.T01:intron 40.0%
! CATTGGTTGTGTACCAAAGA+TGG - Chr6:92095905-92095924 MsG0680034648.01.T01:intron 40.0%
! GCTCACCTTTTCTTTACTCA+CGG + Chr6:92093289-92093308 None:intergenic 40.0%
! GGGTTTGTACGGTCTATTTT+GGG + Chr6:92094895-92094914 None:intergenic 40.0%
! GTCGTCTTCTAACTTTTCTG+AGG - Chr6:92093993-92094012 MsG0680034648.01.T01:CDS 40.0%
! TCTTCTTGGGAGTGTATTGA+GGG - Chr6:92095854-92095873 MsG0680034648.01.T01:intron 40.0%
! TGGGTTTGTACGGTCTATTT+TGG + Chr6:92094896-92094915 None:intergenic 40.0%
! TTCTCCACGATTTGCTTCTT+AGG + Chr6:92095814-92095833 None:intergenic 40.0%
!! AAGGTAGGGTTTAGGGTTTT+TGG + Chr6:92095063-92095082 None:intergenic 40.0%
!! GTAGGAATTTTGGGTGAACT+TGG - Chr6:92096103-92096122 MsG0680034648.01.T01:CDS 40.0%
ACACTCCATCCATGTAGACT+CGG + Chr6:92095883-92095902 None:intergenic 45.0%
ACATGGATGGAGTGTGTCAT+TGG - Chr6:92095888-92095907 MsG0680034648.01.T01:intron 45.0%
ACCCAAATGATTGAGGAGCT+TGG - Chr6:92094361-92094380 MsG0680034648.01.T01:intron 45.0%
AGAGGGTCAATCTAGGGAAA+TGG - Chr6:92094668-92094687 MsG0680034648.01.T01:intron 45.0%
AGTGGCCGTGAGTAAAGAAA+AGG - Chr6:92093281-92093300 MsG0680034648.01.T01:CDS 45.0%
CAGATCATCTCTCCACCTAA+AGG - Chr6:92093481-92093500 MsG0680034648.01.T01:CDS 45.0%
CCTATTGAAGTGGGGACAAA+AGG - Chr6:92094286-92094305 MsG0680034648.01.T01:intron 45.0%
GAATCATCCGGTGAATACTC+TGG - Chr6:92093866-92093885 MsG0680034648.01.T01:CDS 45.0%
TATTGTGGACGAGTCGATCT+CGG - Chr6:92094977-92094996 MsG0680034648.01.T01:intron 45.0%
TCAAATTCCTTCCTCCAGTG+AGG - Chr6:92093706-92093725 MsG0680034648.01.T01:CDS 45.0%
TGGTCCAACAGTGAAGAGTT+TGG + Chr6:92094248-92094267 None:intergenic 45.0%
TGTACCAAAGATGGTCACGT+TGG - Chr6:92095914-92095933 MsG0680034648.01.T01:intron 45.0%
TTGTGAGAAAAGACAGAGGC+CGG - Chr6:92094644-92094663 MsG0680034648.01.T01:intron 45.0%
! CCTTTTGTCCCCACTTCAAT+AGG + Chr6:92094289-92094308 None:intergenic 45.0%
! GTCTTCTTGGGAGTGTATTG+AGG - Chr6:92095853-92095872 MsG0680034648.01.T01:intron 45.0%
! TGTGAAGTATCAGGCAACAG+TGG - Chr6:92093263-92093282 MsG0680034648.01.T01:CDS 45.0%
!! CAGGGTGTTGTTAACTAGGT+TGG - Chr6:92094790-92094809 MsG0680034648.01.T01:intron 45.0%
!! GCTTCAGGGTGTTGTTAACT+AGG - Chr6:92094786-92094805 MsG0680034648.01.T01:intron 45.0%
!!! ATGGTGTTTTTGGGTTGGGT+TGG - Chr6:92094743-92094762 MsG0680034648.01.T01:intron 45.0%
!!! TGGTGTTTTTGGGTTGGGTT+GGG - Chr6:92094744-92094763 MsG0680034648.01.T01:intron 45.0%
!!! TTTTTGGGTTGGGTTGGGAA+AGG - Chr6:92094749-92094768 MsG0680034648.01.T01:intron 45.0%
!!! TTTTATTATTTATTAATATG+AGG - Chr6:92094502-92094521 MsG0680034648.01.T01:intron 5.0%
AAAAGACAGAGGCCGGTAGA+GGG - Chr6:92094651-92094670 MsG0680034648.01.T01:intron 50.0%
AACCATAACCGACCCGTACA+TGG + Chr6:92094850-92094869 None:intergenic 50.0%
ACATGGATGGAGCGTGTCAT+TGG - Chr6:92094028-92094047 MsG0680034648.01.T01:intron 50.0%
AGATGACTCAACCTCACTGG+AGG + Chr6:92093720-92093739 None:intergenic 50.0%
AGGAGAGGATCAAACCTGGT+TGG + Chr6:92094951-92094970 None:intergenic 50.0%
AGGATCAAACCTGGTTGGGT+GGG + Chr6:92094946-92094965 None:intergenic 50.0%
ATAACCGACCCGTACATGGT+GGG + Chr6:92094846-92094865 None:intergenic 50.0%
ATTGTGGACGAGTCGATCTC+GGG - Chr6:92094978-92094997 MsG0680034648.01.T01:intron 50.0%
CACTCCATCCATGTAGACTC+GGG + Chr6:92095882-92095901 None:intergenic 50.0%
CTGAGATGACTCAACCTCAC+TGG + Chr6:92093723-92093742 None:intergenic 50.0%
GGAGAGGATCAAACCTGGTT+GGG + Chr6:92094950-92094969 None:intergenic 50.0%
GTTGGTTGTCCCACCATGTA+CGG - Chr6:92094834-92094853 MsG0680034648.01.T01:intron 50.0%
TCAATAGGACGCTCCACACA+AGG + Chr6:92094274-92094293 None:intergenic 50.0%
TCCCTAGATTGACCCTCTAC+CGG + Chr6:92094666-92094685 None:intergenic 50.0%
TGGTCACGTTGGACCATGTT+TGG - Chr6:92095925-92095944 MsG0680034648.01.T01:intron 50.0%
TGGTCCAACGTGACCATCTT+TGG + Chr6:92095921-92095940 None:intergenic 50.0%
TGTTGGACCATTGCCTTGTG+TGG - Chr6:92094258-92094277 MsG0680034648.01.T01:intron 50.0%
TTCATCGAACATCCCTGCTG+AGG - Chr6:92094605-92094624 MsG0680034648.01.T01:intron 50.0%
TTGGTTGTCCCACCATGTAC+GGG - Chr6:92094835-92094854 MsG0680034648.01.T01:intron 50.0%
! ATGGTCGCCAGAGTATTCAC+CGG + Chr6:92093876-92093895 None:intergenic 50.0%
! GTGGAGCGTCCTATTGAAGT+GGG - Chr6:92094277-92094296 MsG0680034648.01.T01:intron 50.0%
! TGGAGCATCTCTCCTCCTAA+AGG - Chr6:92095358-92095377 MsG0680034648.01.T01:intron 50.0%
! TGGAGCGTCCTATTGAAGTG+GGG - Chr6:92094278-92094297 MsG0680034648.01.T01:intron 50.0%
! TGTGGAGCGTCCTATTGAAG+TGG - Chr6:92094276-92094295 MsG0680034648.01.T01:intron 50.0%
AACCTGGTTGGGTGGGTGTA+CGG + Chr6:92094939-92094958 None:intergenic 55.0%
CACCATGTACGGGTCGGTTA+TGG - Chr6:92094845-92094864 MsG0680034648.01.T01:intron 55.0%
CATAACCGACCCGTACATGG+TGG + Chr6:92094847-92094866 None:intergenic 55.0%
GAAAAGACAGAGGCCGGTAG+AGG - Chr6:92094650-92094669 MsG0680034648.01.T01:intron 55.0%
GACTCAACCTCACTGGAGGA+AGG + Chr6:92093716-92093735 None:intergenic 55.0%
GAGGATCAAACCTGGTTGGG+TGG + Chr6:92094947-92094966 None:intergenic 55.0%
GCCGGTAGAGGGTCAATCTA+GGG - Chr6:92094662-92094681 MsG0680034648.01.T01:intron 55.0%
TTGTCCCACCATGTACGGGT+CGG - Chr6:92094839-92094858 MsG0680034648.01.T01:intron 55.0%
ACCTGGTTGGGTGGGTGTAC+GGG + Chr6:92094938-92094957 None:intergenic 60.0%
GGACGCTCCACACAAGGCAA+TGG + Chr6:92094268-92094287 None:intergenic 60.0%
GGCACCCGAGTCTACATGGA+TGG - Chr6:92095875-92095894 MsG0680034648.01.T01:intron 60.0%
GGCCGGTAGAGGGTCAATCT+AGG - Chr6:92094661-92094680 MsG0680034648.01.T01:intron 60.0%
!! TGAGGGCACCCGAGTCTACA+TGG - Chr6:92095871-92095890 MsG0680034648.01.T01:intron 60.0%
ACCCGTACACCCACCCAACC+AGG - Chr6:92094934-92094953 MsG0680034648.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 92093189 92096195 92093189 ID=MsG0680034648.01;Name=MsG0680034648.01
Chr6 mRNA 92093189 92096195 92093189 ID=MsG0680034648.01.T01;Parent=MsG0680034648.01;Name=MsG0680034648.01.T01;_AED=0.44;_eAED=0.45;_QI=0|0|0|1|1|1|3|0|395
Chr6 exon 92096093 92096195 92096093 ID=MsG0680034648.01.T01:exon:5243;Parent=MsG0680034648.01.T01
Chr6 exon 92095466 92095697 92095466 ID=MsG0680034648.01.T01:exon:5242;Parent=MsG0680034648.01.T01
Chr6 exon 92093189 92094041 92093189 ID=MsG0680034648.01.T01:exon:5241;Parent=MsG0680034648.01.T01
Chr6 CDS 92096093 92096195 92096093 ID=MsG0680034648.01.T01:cds;Parent=MsG0680034648.01.T01
Chr6 CDS 92095466 92095697 92095466 ID=MsG0680034648.01.T01:cds;Parent=MsG0680034648.01.T01
Chr6 CDS 92093189 92094041 92093189 ID=MsG0680034648.01.T01:cds;Parent=MsG0680034648.01.T01
Gene Sequence

>MsG0680034648.01.T01

ATGCAGAATTTGACAGCACAAAGGCAAAGAGATAACAACACTACATTGCAAAATTTGAGATTTGATAGAAAGTTTGTGAAGTATCAGGCAACAGTGGCCGTGAAACCCATCTACCTAAACAATCAAATTCCTTCCTCCAGTGAGGTTGAGTCATCTCAGTCATCCATCCCATATGAAGTTAAGGATTTTGTTAATGTTCCTGTTATAACTTGTGTTCAAGGATTTGGTTATGACCATGTTATAAACGAGAATAAGGTCATTCAACATGCACATGTTTGTATAGAATCATCCGGTGAATACTCTGGCGACCATGAACAAAGTATATATTTAGATTGTTGTTCTTATTACGATGGAGCATCTCTCCTCCTAAAGGTTACTGAACACAATAAAGAAGTTTTGTATTCTTTTTCTGGTGAGAGGTTTAAGAATAAAATCAAACTAGATTTCTCATATCCTTTTCTTGAAAGGGATAACATTCATGTTTTTGGTTTTGGTAGTATTAATGGTACTTTTTGTCTCCATGAATATCAAGGAGATTATGAAAAAATTGTATTATGGAACCCAACTACCCAAACATTTAATCTCCTTCCTCCTAGTGAAATTGAGTCATCTATCCCAGATGAAGCTAAGGGTTTTGTTGAAGTTTTATTTTATTCTCGTCTTCATGGATTTGGTTATGACCATGTTATAAATGACTATACGGTCATTTGCGATGTACAAGTTTTGATACAACCATTATATCAATACTTTGATGACCTTGAAGAAAACTGGTTGAAAGAAATTAATTCTTGGGAGATATATAGCCTAAGAAGCAAATCGTGGAGAAAACTTCATGTTGAGATGTCGTCTTCTTGGGAGTGTATTGAGGGCACCCGAGTCTACATGGATGGAGTGTGTCATTGGTTGTGTACCAAAGATGGTCACGTTGGACCATGTTTGGTATCATTTCACCTAAGCAATGATGTGTTTTTCGTAACACCCATACCCTCAAACATATATGATTGTTTTGGTATTAAATTAAACTGGGTAAACTTGGTGGTGTTAAATGGGTATGTTGCTTTGATCTCATATCATGAAAAGATGACTACTTTTCACGTAGGAATTTTGGGTGAACTTGGTATGAAGGAATCGTGGACCAAACTCTTCACATTTGTGTTGGAACAAAATGTGTTTAACAATGAACCATAA
Protein sequence

>MsG0680034648.01.T01

MQNLTAQRQRDNNTTLQNLRFDRKFVKYQATVAVKPIYLNNQIPSSSEVESSQSSIPYEVKDFVNVPVITCVQGFGYDHVINENKVIQHAHVCIESSGEYSGDHEQSIYLDCCSYYDGASLLLKVTEHNKEVLYSFSGERFKNKIKLDFSYPFLERDNIHVFGFGSINGTFCLHEYQGDYEKIVLWNPTTQTFNLLPPSEIESSIPDEAKGFVEVLFYSRLHGFGYDHVINDYTVICDVQVLIQPLYQYFDDLEENWLKEINSWEIYSLRSKSWRKLHVEMSSSWECIEGTRVYMDGVCHWLCTKDGHVGPCLVSFHLSNDVFFVTPIPSNIYDCFGIKLNWVNLVVLNGYVALISYHEKMTTFHVGILGELGMKESWTKLFTFVLEQNVFNNEP*