AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035680.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035680.01.T01 MTR_6g079810 54.924 264 73 5 13 234 58 317 5.05e-85 261
MsG0680035680.01.T01 MTR_7g104710 61.435 223 70 7 15 233 8 218 3.53e-79 241
MsG0680035680.01.T01 MTR_4g028510 53.906 256 77 8 15 234 6 256 6.83e-78 242
MsG0680035680.01.T01 MTR_4g028680 53.516 256 78 7 15 235 6 255 2.74e-77 239
MsG0680035680.01.T01 MTR_6g080680 52.672 262 90 7 12 245 7 262 2.11e-73 229
MsG0680035680.01.T01 MTR_6g086825 52.529 257 85 6 10 233 55 307 4.14e-73 230
MsG0680035680.01.T01 MTR_0054s0090 51.341 261 76 8 17 234 10 262 1.93e-72 227
MsG0680035680.01.T01 MTR_0054s0100 50.575 261 80 9 17 234 10 264 1.53e-71 224
MsG0680035680.01.T01 MTR_0134s0060 51.301 269 76 9 15 234 3 265 1.86e-71 224
MsG0680035680.01.T01 MTR_4g028660 49.804 255 90 8 14 235 5 254 4.02e-70 220
MsG0680035680.01.T01 MTR_4g027450 49.804 255 90 8 14 235 5 254 4.02e-70 220
MsG0680035680.01.T01 MTR_6g090180 49.421 259 90 7 13 232 36 292 3.52e-68 216
MsG0680035680.01.T01 MTR_4g028750 50.394 254 89 8 14 234 5 254 4.40e-66 210
MsG0680035680.01.T01 MTR_4g130330 48.780 246 88 8 21 233 3 243 1.54e-63 203
MsG0680035680.01.T01 MTR_6g478230 49.606 254 100 8 1 234 1 246 3.52e-62 201
MsG0680035680.01.T01 MTR_6g079770 48.106 264 84 7 19 234 12 270 8.36e-62 199
MsG0680035680.01.T01 MTR_6g070880 48.291 234 76 6 22 213 29 259 1.13e-61 194
MsG0680035680.01.T01 MTR_6g071420 48.291 234 76 6 22 213 29 259 1.13e-61 194
MsG0680035680.01.T01 MTR_8g012090 48.661 224 94 7 19 233 11 222 2.58e-57 186
MsG0680035680.01.T01 MTR_6g090250 47.177 248 70 8 43 234 29 271 2.20e-56 186
MsG0680035680.01.T01 MTR_0129s0070 45.714 245 95 8 18 230 11 249 3.88e-54 179
MsG0680035680.01.T01 MTR_6g078010 52.356 191 70 7 62 234 1 188 3.16e-52 173
MsG0680035680.01.T01 MTR_5g097680 42.125 273 97 9 17 231 10 279 1.75e-51 173
MsG0680035680.01.T01 MTR_4g055820 41.406 256 105 8 13 230 3 251 4.86e-51 170
MsG0680035680.01.T01 MTR_5g037680 45.607 239 96 9 21 232 4 235 1.33e-50 171
MsG0680035680.01.T01 MTR_0129s0050 44.151 265 84 10 18 230 8 260 3.09e-50 169
MsG0680035680.01.T01 MTR_3g011120 43.145 248 102 8 12 230 1 238 3.96e-50 168
MsG0680035680.01.T01 MTR_4g117550 42.520 254 104 9 18 236 11 257 1.55e-49 167
MsG0680035680.01.T01 MTR_6g461660 43.651 252 99 8 17 231 12 257 2.66e-49 167
MsG0680035680.01.T01 MTR_0129s0120 43.673 245 100 8 18 230 11 249 7.43e-49 165
MsG0680035680.01.T01 MTR_2g034700 42.562 242 113 5 12 231 1 238 1.97e-48 164
MsG0680035680.01.T01 MTR_7g079640 42.731 227 112 6 18 233 8 227 3.05e-48 163
MsG0680035680.01.T01 MTR_8g039500 42.739 241 103 9 12 230 1 228 3.18e-48 162
MsG0680035680.01.T01 MTR_6g465360 57.962 157 57 5 15 167 53 204 3.71e-48 160
MsG0680035680.01.T01 MTR_2g022000 39.711 277 109 9 1 230 1 266 7.51e-48 164
MsG0680035680.01.T01 MTR_5g097820 41.200 250 105 9 17 232 14 255 8.69e-48 159
MsG0680035680.01.T01 MTR_2g066170 42.213 244 109 10 12 230 1 237 1.09e-47 162
MsG0680035680.01.T01 MTR_8g063440 43.210 243 105 8 15 230 3 239 2.03e-47 161
MsG0680035680.01.T01 MTR_2g038680 40.909 264 97 9 17 230 9 263 2.24e-47 162
MsG0680035680.01.T01 MTR_7g017170 42.449 245 105 8 18 233 12 249 5.27e-47 161
MsG0680035680.01.T01 MTR_7g017130 42.449 245 105 8 18 233 12 249 5.89e-47 160
MsG0680035680.01.T01 MTR_5g024260 41.564 243 116 6 12 230 7 247 6.71e-47 160
MsG0680035680.01.T01 MTR_5g096900 42.857 252 94 11 17 231 5 243 1.53e-46 157
MsG0680035680.01.T01 MTR_5g097220 40.909 264 97 8 19 231 8 263 1.71e-46 159
MsG0680035680.01.T01 MTR_2g066200 41.176 238 111 8 17 230 5 237 2.44e-46 159
MsG0680035680.01.T01 MTR_5g074850 41.392 273 100 13 9 231 17 279 4.96e-46 164
MsG0680035680.01.T01 MTR_5g097350 41.631 233 97 6 34 233 25 251 1.46e-45 156
MsG0680035680.01.T01 MTR_5g092850 40.800 250 101 7 20 231 11 251 2.43e-45 156
MsG0680035680.01.T01 MTR_2g021800 40.927 259 104 8 19 230 11 267 6.89e-45 155
MsG0680035680.01.T01 MTR_8g064890 41.860 258 103 12 12 231 1 249 1.91e-44 154
MsG0680035680.01.T01 MTR_2g021950 41.633 245 112 8 15 230 7 249 5.97e-44 152
MsG0680035680.01.T01 MTR_7g017040 40.984 244 113 6 12 230 4 241 6.07e-44 152
MsG0680035680.01.T01 MTR_5g059430 37.736 265 105 8 19 232 20 275 6.56e-44 153
MsG0680035680.01.T01 MTR_8g467670 37.295 244 124 6 12 230 1 240 8.10e-44 152
MsG0680035680.01.T01 MTR_5g096910 39.098 266 129 7 11 246 2 264 3.13e-43 150
MsG0680035680.01.T01 MTR_8g464770 43.333 240 98 11 19 230 7 236 3.83e-43 150
MsG0680035680.01.T01 MTR_5g094350 39.113 248 93 5 23 230 11 240 6.08e-42 144
MsG0680035680.01.T01 MTR_5g097330 40.996 261 109 10 12 233 4 258 9.15e-42 147
MsG0680035680.01.T01 MTR_5g075370 40.385 260 96 11 22 231 5 255 1.01e-41 151
MsG0680035680.01.T01 MTR_8g013000 39.608 255 103 9 18 231 4 248 1.10e-41 147
MsG0680035680.01.T01 MTR_4g102410 39.326 267 118 11 12 241 49 308 2.94e-41 146
MsG0680035680.01.T01 MTR_1g053510 38.889 270 118 7 15 238 5 273 3.12e-41 145
MsG0680035680.01.T01 MTR_7g069550 38.281 256 108 10 18 233 8 253 3.28e-41 145
MsG0680035680.01.T01 MTR_5g096630 40.833 240 101 8 28 230 21 256 3.75e-41 145
MsG0680035680.01.T01 MTR_2g104340 36.029 272 123 7 12 245 1 259 2.35e-40 143
MsG0680035680.01.T01 MTR_8g046310 39.271 247 116 8 12 233 1 238 2.42e-40 142
MsG0680035680.01.T01 MTR_1g007410 41.176 255 99 11 17 230 15 259 3.73e-40 143
MsG0680035680.01.T01 MTR_2g065860 40.000 255 120 10 17 241 5 256 1.06e-39 141
MsG0680035680.01.T01 MTR_7g023800 46.809 188 70 7 64 238 1 171 1.43e-39 139
MsG0680035680.01.T01 MTR_1g115205 38.889 234 102 6 20 232 24 237 1.44e-39 137
MsG0680035680.01.T01 MTR_2g104280 38.989 277 98 12 19 245 9 264 1.48e-39 141
MsG0680035680.01.T01 MTR_1g076810 40.909 242 115 9 8 225 4 241 2.63e-39 144
MsG0680035680.01.T01 MTR_2g065840 38.017 242 120 8 17 231 5 243 7.83e-39 139
MsG0680035680.01.T01 MTR_5g069390 36.508 252 119 7 19 232 20 268 1.39e-38 140
MsG0680035680.01.T01 MTR_1g050308 41.850 227 101 8 12 215 23 241 1.88e-38 137
MsG0680035680.01.T01 MTR_8g036970 41.204 216 82 8 29 231 2 185 3.76e-38 137
MsG0680035680.01.T01 MTR_7g016930 37.657 239 102 6 17 230 9 225 2.31e-37 134
MsG0680035680.01.T01 MTR_8g033090 37.354 257 114 8 20 231 9 263 3.91e-37 135
MsG0680035680.01.T01 MTR_8g033110 35.472 265 125 6 12 231 1 264 4.02e-37 135
MsG0680035680.01.T01 MTR_8g041270 36.364 275 117 9 15 245 5 265 6.15e-37 134
MsG0680035680.01.T01 MTR_0831s0010 36.437 247 113 8 15 230 39 272 1.99e-36 133
MsG0680035680.01.T01 MTR_5g037190 38.428 229 129 6 14 233 6 231 2.72e-36 129
MsG0680035680.01.T01 MTR_2g064950 37.838 259 102 10 18 233 4 246 3.05e-36 132
MsG0680035680.01.T01 MTR_8g064790 38.938 226 102 8 12 231 1 196 2.27e-35 129
MsG0680035680.01.T01 MTR_2g021770 34.100 261 119 9 17 230 5 259 4.03e-35 129
MsG0680035680.01.T01 MTR_6g087620 51.034 145 60 4 94 234 1 138 6.00e-35 126
MsG0680035680.01.T01 MTR_8g033140 34.191 272 121 7 15 230 8 277 1.33e-34 128
MsG0680035680.01.T01 MTR_4g014370 37.313 268 110 12 17 230 4 267 2.05e-34 127
MsG0680035680.01.T01 MTR_8g018110 35.448 268 122 10 12 231 1 265 2.22e-34 127
MsG0680035680.01.T01 MTR_2g066150 40.611 229 116 12 12 233 1 216 2.25e-33 124
MsG0680035680.01.T01 MTR_6g079790 47.134 157 50 4 106 233 2 154 1.05e-32 121
MsG0680035680.01.T01 MTR_8g063330 35.484 248 117 10 17 230 5 243 4.34e-32 122
MsG0680035680.01.T01 MTR_8g032980 35.424 271 113 12 15 231 5 267 5.26e-32 121
MsG0680035680.01.T01 MTR_8g073570 45.402 174 73 7 15 181 3 161 1.11e-31 114
MsG0680035680.01.T01 MTR_5g091140 38.525 244 123 9 15 240 39 273 2.06e-31 120
MsG0680035680.01.T01 MTR_1g007430 39.423 208 88 8 36 210 7 209 5.20e-31 117
MsG0680035680.01.T01 MTR_5g072060 35.246 244 97 6 24 231 5 223 6.47e-31 120
MsG0680035680.01.T01 MTR_1g007450 34.231 260 132 8 17 242 5 259 7.09e-31 118
MsG0680035680.01.T01 MTR_2g104260 35.662 272 121 8 18 245 7 268 7.69e-29 110
MsG0680035680.01.T01 MTR_5g097650 43.046 151 68 4 20 166 17 153 9.20e-29 107
MsG0680035680.01.T01 MTR_8g046200 33.101 287 113 11 16 233 7 283 1.65e-28 112
MsG0680035680.01.T01 MTR_8g046220 34.201 269 108 10 21 233 13 268 4.08e-28 110
MsG0680035680.01.T01 MTR_8g063370 31.907 257 137 9 11 239 10 256 1.94e-27 108
MsG0680035680.01.T01 MTR_4g014370 37.168 226 85 9 17 230 15 195 3.90e-27 107
MsG0680035680.01.T01 MTR_5g092860 32.500 240 85 8 43 232 20 232 8.72e-27 106
MsG0680035680.01.T01 MTR_5g096070 42.208 154 57 4 12 162 13 137 3.31e-26 100
MsG0680035680.01.T01 MTR_1g098180 32.766 235 102 6 21 233 15 215 3.69e-26 105
MsG0680035680.01.T01 MTR_6g087660 70.833 72 17 1 17 84 10 81 5.56e-26 100
MsG0680035680.01.T01 MTR_5g064700 33.190 232 103 9 64 245 1 230 7.29e-25 101
MsG0680035680.01.T01 MTR_5g043605 31.064 235 95 4 13 231 8 191 2.94e-24 99.8
MsG0680035680.01.T01 MTR_6g090260 79.310 58 12 0 17 74 12 69 1.51e-23 95.9
MsG0680035680.01.T01 MTR_6g090260 84.444 45 7 0 190 234 72 116 9.55e-22 91.3
MsG0680035680.01.T01 MTR_8g063310 31.452 248 139 12 6 231 4 242 2.60e-23 97.8
MsG0680035680.01.T01 MTR_3g047580 39.073 151 65 5 12 159 1 127 8.05e-23 90.5
MsG0680035680.01.T01 MTR_7g111700 38.312 154 70 4 22 163 12 152 3.24e-21 91.3
MsG0680035680.01.T01 MTR_5g022850 31.048 248 81 9 22 230 13 209 4.55e-21 90.9
MsG0680035680.01.T01 MTR_8g063350 30.085 236 100 10 19 231 8 201 1.13e-20 89.7
MsG0680035680.01.T01 MTR_3g019290 34.637 179 71 5 15 187 3 141 1.86e-20 85.9
MsG0680035680.01.T01 MTR_5g074800 33.333 204 92 7 64 231 1 196 1.99e-20 89.0
MsG0680035680.01.T01 MTR_5g091150 39.823 113 54 4 121 233 38 136 6.05e-18 79.7
MsG0680035680.01.T01 MTR_8g041440 62.903 62 21 1 24 83 14 75 8.35e-18 77.0
MsG0680035680.01.T01 MTR_4g007940 31.098 164 78 5 94 230 28 183 1.20e-17 81.3
MsG0680035680.01.T01 MTR_5g076490 34.715 193 96 6 62 232 1 185 4.44e-17 79.3
MsG0680035680.01.T01 MTR_5g068490 35.211 142 68 6 103 233 8 136 3.35e-15 73.6
MsG0680035680.01.T01 MTR_1g050312 35.606 132 64 5 94 210 16 141 3.28e-14 70.9
MsG0680035680.01.T01 MTR_5g086780 75.510 49 11 1 17 65 9 56 1.27e-13 68.6
MsG0680035680.01.T01 MTR_2g426070 29.004 231 128 11 33 234 14 237 4.01e-13 68.6
MsG0680035680.01.T01 MTR_4g016000 33.962 106 41 2 150 230 2 103 6.25e-13 66.2
MsG0680035680.01.T01 MTR_5g086590 38.679 106 42 5 145 231 13 114 7.63e-13 66.2
MsG0680035680.01.T01 MTR_1g009110 30.000 150 97 4 19 164 8 153 8.42e-13 67.4
MsG0680035680.01.T01 MTR_5g023970 61.702 47 18 0 187 233 5 51 9.51e-13 65.5
MsG0680035680.01.T01 MTR_8g013010 27.519 258 136 11 17 245 44 279 3.98e-12 65.1
MsG0680035680.01.T01 MTR_4g021785 26.891 238 140 8 18 241 2 219 1.56e-11 63.5
MsG0680035680.01.T01 MTR_0667s0010 27.197 239 135 10 20 234 1 224 1.59e-11 63.9
MsG0680035680.01.T01 MTR_1g068835 27.074 229 126 9 23 231 2 209 3.66e-11 62.8
MsG0680035680.01.T01 MTR_3g103020 26.016 246 137 9 24 245 19 243 5.28e-11 62.4
MsG0680035680.01.T01 MTR_3g058470 25.571 219 119 10 28 217 40 243 7.61e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTTTATTATTATCTTCA+TGG 0.236829 6:+110633894 MsG0680035680.01.T01:CDS
TATTATTATCTTCATGGATT+TGG 0.263186 6:+110633900 MsG0680035680.01.T01:CDS
ATAATTCTTTAGCTCCCTTA+TGG 0.278946 6:+110634025 MsG0680035680.01.T01:CDS
CCATGAAGATAATAATAAAC+TGG 0.289982 6:-110633894 None:intergenic
GAGGAAGGAGCTTGAATGTT+TGG 0.311474 6:-110633836 None:intergenic
AGCTTGAATGTTTGGGTAGT+TGG 0.330843 6:-110633828 None:intergenic
TAATTCTTTAGCTCCCTTAT+GGG 0.341136 6:+110634026 MsG0680035680.01.T01:CDS
GCTTGAATGTTTGGGTAGTT+GGG 0.384081 6:-110633827 None:intergenic
GGCAATATCATCAGATATAT+AGG 0.385879 6:-110633445 None:intergenic
TTGTCTGATTCTTATTATGA+TGG 0.386890 6:+110633585 MsG0680035680.01.T01:CDS
AGGAAGGAGCTTGAATGTTT+GGG 0.389182 6:-110633835 None:intergenic
TGCTATATCTTCAGACGGGC+TGG 0.390903 6:+110633999 MsG0680035680.01.T01:intron
TATCCCTGTCGGAGAATGTT+TGG 0.402338 6:+110634172 MsG0680035680.01.T01:CDS
AGAGGGAACCCAAGTGTATA+TGG 0.406578 6:+110634119 MsG0680035680.01.T01:CDS
TTGAATGCGTTCATAAATCA+TGG 0.409558 6:+110633511 MsG0680035680.01.T01:CDS
CAGAAATCAAAACCAACGTT+GGG 0.414710 6:+110633381 MsG0680035680.01.T01:CDS
AAGAGGCAGCTTGGATAGAA+TGG 0.415187 6:-110633472 None:intergenic
TAAGCTATATATCTCCCATA+AGG 0.425559 6:-110634040 None:intergenic
AAACGTTTAAAAGATTTAAG+AGG 0.433762 6:-110633489 None:intergenic
GCTATATCTTCAGACGGGCT+GGG 0.465976 6:+110634000 MsG0680035680.01.T01:intron
ATATGGATGGAGTGTGTCAT+TGG 0.473553 6:+110634136 MsG0680035680.01.T01:CDS
AAAAGATTTAAGAGGCAGCT+TGG 0.490753 6:-110633481 None:intergenic
CAAGCTCCTTCCTCCTAGTC+CGG 0.496611 6:+110633845 MsG0680035680.01.T01:CDS
TCTTCACAATCTAAAGAAAA+CGG 0.513721 6:-110634099 None:intergenic
CAGCTTGGATAGAATGGAAA+AGG 0.523266 6:-110633466 None:intergenic
GGAACATGTTCATGAAATGA+TGG 0.532734 6:-110633551 None:intergenic
GATACCAAACATTCTCCGAC+AGG 0.533424 6:-110634176 None:intergenic
CCAACCAACGAGAAATGAAA+AGG 0.536381 6:+110633413 MsG0680035680.01.T01:CDS
AAGCTATATATCTCCCATAA+GGG 0.536778 6:-110634039 None:intergenic
ACAACGGATTGAGCCGGACT+AGG 0.544928 6:-110633858 None:intergenic
ACACTCCATCCATATACACT+TGG 0.551104 6:-110634128 None:intergenic
CATGAAGATAATAATAAACT+GGG 0.554225 6:-110633893 None:intergenic
CAAAATGAAAATAATGATGA+TGG 0.555271 6:+110633786 MsG0680035680.01.T01:CDS
GGAACCCAAGTGTATATGGA+TGG 0.583178 6:+110634123 MsG0680035680.01.T01:CDS
CACTCCATCCATATACACTT+GGG 0.603357 6:-110634127 None:intergenic
GCAGAAATCAAAACCAACGT+TGG 0.605035 6:+110633380 MsG0680035680.01.T01:CDS
ATGATGGTGAAATTGTATTG+TGG 0.605860 6:+110633802 MsG0680035680.01.T01:CDS
GACTCAACAACGGATTGAGC+CGG 0.608433 6:-110633864 None:intergenic
ATTGAGCCGGACTAGGAGGA+AGG 0.617108 6:-110633851 None:intergenic
AATCAGACAATAAATTGTTG+CGG 0.631630 6:-110633572 None:intergenic
ACGGATTGAGCCGGACTAGG+AGG 0.635477 6:-110633855 None:intergenic
ATAGCTTAAGAAGTAACTCG+TGG 0.647029 6:+110634055 MsG0680035680.01.T01:CDS
TGGAGACAAAACCCCAACGT+TGG 0.654621 6:-110633393 None:intergenic
GCTTAAGAAGTAACTCGTGG+AGG 0.659221 6:+110634058 MsG0680035680.01.T01:CDS
TGGGATTAACGACTCAACAA+CGG 0.671633 6:-110633874 None:intergenic
AGAAATCAAAACCAACGTTG+GGG 0.673383 6:+110633382 MsG0680035680.01.T01:CDS
ATACCAAACATTCTCCGACA+GGG 0.697245 6:-110634175 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACGTTTAAAAGATTTAAG+AGG - Chr6:110633492-110633511 None:intergenic 20.0%
!! AACCAAAAATATTATACCAA+AGG - Chr6:110633734-110633753 None:intergenic 20.0%
!! CAAAATGAAAATAATGATGA+TGG + Chr6:110633786-110633805 MsG0680035680.01.T01:CDS 20.0%
!! CATGAAGATAATAATAAACT+GGG - Chr6:110633896-110633915 None:intergenic 20.0%
!! TATTATTATCTTCATGGATT+TGG + Chr6:110633900-110633919 MsG0680035680.01.T01:CDS 20.0%
!!! CATCATTATTTTCATTTTGA+TGG - Chr6:110633785-110633804 None:intergenic 20.0%
!!! TGGTATAATATTTTTGGTTT+TGG + Chr6:110633735-110633754 MsG0680035680.01.T01:CDS 20.0%
!!! TTCCTTTGGTATAATATTTT+TGG + Chr6:110633729-110633748 MsG0680035680.01.T01:CDS 20.0%
! AATCAGACAATAAATTGTTG+CGG - Chr6:110633575-110633594 None:intergenic 25.0%
! CCAGTTTATTATTATCTTCA+TGG + Chr6:110633894-110633913 MsG0680035680.01.T01:CDS 25.0%
! CCATGAAGATAATAATAAAC+TGG - Chr6:110633897-110633916 None:intergenic 25.0%
! TCTTCACAATCTAAAGAAAA+CGG - Chr6:110634102-110634121 None:intergenic 25.0%
! TGACCTTAAAAATGACTATA+AGG + Chr6:110633929-110633948 MsG0680035680.01.T01:intron 25.0%
! TTGTCTGATTCTTATTATGA+TGG + Chr6:110633585-110633604 MsG0680035680.01.T01:CDS 25.0%
!! TTTTCTTTAGATTGTGAAGA+GGG + Chr6:110634102-110634121 MsG0680035680.01.T01:CDS 25.0%
!!! AAACGTTTTTCAAATGAATC+AGG - Chr6:110633711-110633730 None:intergenic 25.0%
!!! AACGTTTTTCAAATGAATCA+GGG - Chr6:110633710-110633729 None:intergenic 25.0%
!!! TGACCTTATAGTCATTTTTA+AGG - Chr6:110633935-110633954 None:intergenic 25.0%
!!! TTTGGTTTTGGTAGTATTAA+TGG + Chr6:110633747-110633766 MsG0680035680.01.T01:CDS 25.0%
AAGCTATATATCTCCCATAA+GGG - Chr6:110634042-110634061 None:intergenic 30.0%
CATTTGAAAAACGTTTCCTT+TGG + Chr6:110633715-110633734 MsG0680035680.01.T01:CDS 30.0%
GGCAATATCATCAGATATAT+AGG - Chr6:110633448-110633467 None:intergenic 30.0%
TAAGCTATATATCTCCCATA+AGG - Chr6:110634043-110634062 None:intergenic 30.0%
TTGAATGCGTTCATAAATCA+TGG + Chr6:110633511-110633530 MsG0680035680.01.T01:CDS 30.0%
! ATAATTCTTTAGCTCCCTTA+TGG + Chr6:110634025-110634044 MsG0680035680.01.T01:CDS 30.0%
! ATGATGGTGAAATTGTATTG+TGG + Chr6:110633802-110633821 MsG0680035680.01.T01:CDS 30.0%
! GTTTTCTTTAGATTGTGAAG+AGG + Chr6:110634101-110634120 MsG0680035680.01.T01:CDS 30.0%
! TAATTCTTTAGCTCCCTTAT+GGG + Chr6:110634026-110634045 MsG0680035680.01.T01:CDS 30.0%
AAAAGATTTAAGAGGCAGCT+TGG - Chr6:110633484-110633503 None:intergenic 35.0%
AGAAATCAAAACCAACGTTG+GGG + Chr6:110633382-110633401 MsG0680035680.01.T01:CDS 35.0%
ATAGCTTAAGAAGTAACTCG+TGG + Chr6:110634055-110634074 MsG0680035680.01.T01:CDS 35.0%
CAGAAATCAAAACCAACGTT+GGG + Chr6:110633381-110633400 MsG0680035680.01.T01:CDS 35.0%
GGAACATGTTCATGAAATGA+TGG - Chr6:110633554-110633573 None:intergenic 35.0%
GTGTGAAAAAATATCCCTGT+CGG + Chr6:110634161-110634180 MsG0680035680.01.T01:CDS 35.0%
!! CGTTTTGCTATATCTTCAGA+CGG + Chr6:110633994-110634013 MsG0680035680.01.T01:intron 35.0%
!! GTTTTGCTATATCTTCAGAC+GGG + Chr6:110633995-110634014 MsG0680035680.01.T01:intron 35.0%
ACACTCCATCCATATACACT+TGG - Chr6:110634131-110634150 None:intergenic 40.0%
AGCTTGAATGTTTGGGTAGT+TGG - Chr6:110633831-110633850 None:intergenic 40.0%
AGGAAGGAGCTTGAATGTTT+GGG - Chr6:110633838-110633857 None:intergenic 40.0%
ATACCAAACATTCTCCGACA+GGG - Chr6:110634178-110634197 None:intergenic 40.0%
ATATGGATGGAGTGTGTCAT+TGG + Chr6:110634136-110634155 MsG0680035680.01.T01:CDS 40.0%
CACTCCATCCATATACACTT+GGG - Chr6:110634130-110634149 None:intergenic 40.0%
CAGCTTGGATAGAATGGAAA+AGG - Chr6:110633469-110633488 None:intergenic 40.0%
CCAACCAACGAGAAATGAAA+AGG + Chr6:110633413-110633432 MsG0680035680.01.T01:CDS 40.0%
GCAGAAATCAAAACCAACGT+TGG + Chr6:110633380-110633399 MsG0680035680.01.T01:CDS 40.0%
GCTTGAATGTTTGGGTAGTT+GGG - Chr6:110633830-110633849 None:intergenic 40.0%
TGGGATTAACGACTCAACAA+CGG - Chr6:110633877-110633896 None:intergenic 40.0%
! CCTTTTCATTTCTCGTTGGT+TGG - Chr6:110633416-110633435 None:intergenic 40.0%
! CTCACCTTTTCATTTCTCGT+TGG - Chr6:110633420-110633439 None:intergenic 40.0%
AAGAGGCAGCTTGGATAGAA+TGG - Chr6:110633475-110633494 None:intergenic 45.0%
AGAGGGAACCCAAGTGTATA+TGG + Chr6:110634119-110634138 MsG0680035680.01.T01:CDS 45.0%
GAGGAAGGAGCTTGAATGTT+TGG - Chr6:110633839-110633858 None:intergenic 45.0%
GATACCAAACATTCTCCGAC+AGG - Chr6:110634179-110634198 None:intergenic 45.0%
GCTTAAGAAGTAACTCGTGG+AGG + Chr6:110634058-110634077 MsG0680035680.01.T01:CDS 45.0%
GGAACCCAAGTGTATATGGA+TGG + Chr6:110634123-110634142 MsG0680035680.01.T01:CDS 45.0%
TATCCCTGTCGGAGAATGTT+TGG + Chr6:110634172-110634191 MsG0680035680.01.T01:CDS 45.0%
TGCTATATCTTCAGACGGGC+TGG + Chr6:110633999-110634018 MsG0680035680.01.T01:intron 50.0%
TGGAGACAAAACCCCAACGT+TGG - Chr6:110633396-110633415 None:intergenic 50.0%
! GCTATATCTTCAGACGGGCT+GGG + Chr6:110634000-110634019 MsG0680035680.01.T01:intron 50.0%
!! GACTCAACAACGGATTGAGC+CGG - Chr6:110633867-110633886 None:intergenic 50.0%
CAAGCTCCTTCCTCCTAGTC+CGG + Chr6:110633845-110633864 MsG0680035680.01.T01:CDS 55.0%
! ATTGAGCCGGACTAGGAGGA+AGG - Chr6:110633854-110633873 None:intergenic 55.0%
!! ACAACGGATTGAGCCGGACT+AGG - Chr6:110633861-110633880 None:intergenic 55.0%
! ACGGATTGAGCCGGACTAGG+AGG - Chr6:110633858-110633877 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110633378 110634209 110633378 ID=MsG0680035680.01;Name=MsG0680035680.01
Chr6 mRNA 110633378 110634209 110633378 ID=MsG0680035680.01.T01;Parent=MsG0680035680.01;Name=MsG0680035680.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0|0|1|1|1|2|0|246
Chr6 exon 110633378 110633921 110633378 ID=MsG0680035680.01.T01:exon:14798;Parent=MsG0680035680.01.T01
Chr6 exon 110634013 110634209 110634013 ID=MsG0680035680.01.T01:exon:14799;Parent=MsG0680035680.01.T01
Chr6 CDS 110633378 110633921 110633378 ID=MsG0680035680.01.T01:cds;Parent=MsG0680035680.01.T01
Chr6 CDS 110634013 110634209 110634013 ID=MsG0680035680.01.T01:cds;Parent=MsG0680035680.01.T01
Gene Sequence

>MsG0680035680.01.T01

ATGCAGAAATCAAAACCAACGTTGGGGTTTTGTCTCCAACCAACGAGAAATGAAAAGGTGAGCAACACCTATATATCTGATGATATTGCCTTTTCCATTCTATCCAAGCTGCCTCTTAAATCTTTTAAACGTTTTGAATGCGTTCATAAATCATGGTCTCTCTTATTCGAAAACCATCATTTCATGAACATGTTCCGCAACAATTTATTGTCTGATTCTTATTATGATGGAGCATCTATCGTCTTTAATGTTTACGACTATTCAATTCATGAATATGTTTTTTATTCTCTTTCTAGTGAGAGTTTTGAGAATAAAGTCAAATTAGTTTTCCCTGATTCATTTGAAAAACGTTTCCTTTGGTATAATATTTTTGGTTTTGGTAGTATTAATGGCACACTTTGTTTCCATCAAAATGAAAATAATGATGATGGTGAAATTGTATTGTGGAACCCAACTACCCAAACATTCAAGCTCCTTCCTCCTAGTCCGGCTCAATCCGTTGTTGAGTCGTTAATCCCAGTTTATTATTATCTTCATGGATTTGACGGGCTGGGAGATAATTCTTTAGCTCCCTTATGGGAGATATATAGCTTAAGAAGTAACTCGTGGAGGAAACTTGATGTTGACATGCCGTTTTCTTTAGATTGTGAAGAGGGAACCCAAGTGTATATGGATGGAGTGTGTCATTGGTTGTGTGAAAAAATATCCCTGTCGGAGAATGTTTGGTATCATTTTACTTGA
Protein sequence

>MsG0680035680.01.T01

MQKSKPTLGFCLQPTRNEKVSNTYISDDIAFSILSKLPLKSFKRFECVHKSWSLLFENHHFMNMFRNNLLSDSYYDGASIVFNVYDYSIHEYVFYSLSSESFENKVKLVFPDSFEKRFLWYNIFGFGSINGTLCFHQNENNDDGEIVLWNPTTQTFKLLPPSPAQSVVESLIPVYYYLHGFDGLGDNSLAPLWEIYSLRSNSWRKLDVDMPFSLDCEEGTQVYMDGVCHWLCEKISLSENVWYHFT*