Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044038.01.T01 | AET02721.1 | 57.203 | 236 | 50 | 7 | 32 | 242 | 88 | 297 | 5.20E-71 | 234 |
MsG0880044038.01.T01 | AET02721.1 | 72.549 | 51 | 13 | 1 | 233 | 282 | 350 | 400 | 4.11E-12 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044038.01.T01 | G7L8J7 | 57.203 | 236 | 50 | 7 | 32 | 242 | 88 | 297 | 2.49e-71 | 234 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880044038.01.T01 | MTR_8g046220 | 57.203 | 236 | 50 | 7 | 32 | 242 | 88 | 297 | 6.30e-75 | 234 |
MsG0880044038.01.T01 | MTR_8g046220 | 72.549 | 51 | 13 | 1 | 233 | 282 | 350 | 400 | 4.98e-16 | 77.8 |
MsG0880044038.01.T01 | MTR_8g046200 | 53.165 | 237 | 76 | 7 | 32 | 240 | 83 | 312 | 1.04e-69 | 222 |
MsG0880044038.01.T01 | MTR_8g046200 | 60.000 | 55 | 21 | 1 | 229 | 282 | 362 | 416 | 1.63e-12 | 67.4 |
MsG0880044038.01.T01 | MTR_8g046310 | 46.847 | 222 | 68 | 11 | 32 | 242 | 87 | 269 | 1.58e-41 | 147 |
MsG0880044038.01.T01 | MTR_8g046310 | 65.455 | 55 | 18 | 1 | 229 | 282 | 318 | 372 | 1.58e-15 | 76.3 |
MsG0880044038.01.T01 | MTR_1g047080 | 39.200 | 250 | 73 | 7 | 82 | 282 | 58 | 277 | 1.08e-39 | 140 |
MsG0880044038.01.T01 | MTR_8g035690 | 50.311 | 161 | 50 | 6 | 103 | 239 | 36 | 190 | 2.32e-39 | 139 |
MsG0880044038.01.T01 | MTR_8g033140 | 35.714 | 280 | 121 | 13 | 5 | 236 | 34 | 302 | 1.27e-30 | 119 |
MsG0880044038.01.T01 | MTR_8g033110 | 41.711 | 187 | 66 | 6 | 82 | 239 | 120 | 292 | 3.82e-30 | 117 |
MsG0880044038.01.T01 | MTR_8g018110 | 32.862 | 283 | 98 | 10 | 82 | 282 | 119 | 391 | 1.71e-29 | 115 |
MsG0880044038.01.T01 | MTR_1g053510 | 41.176 | 187 | 70 | 10 | 74 | 233 | 114 | 287 | 9.81e-29 | 114 |
MsG0880044038.01.T01 | MTR_8g032980 | 37.395 | 238 | 99 | 10 | 65 | 262 | 88 | 315 | 1.17e-28 | 113 |
MsG0880044038.01.T01 | MTR_8g033090 | 40.107 | 187 | 67 | 7 | 82 | 239 | 120 | 290 | 1.53e-26 | 107 |
MsG0880044038.01.T01 | MTR_4g117550 | 30.159 | 252 | 115 | 10 | 83 | 282 | 125 | 367 | 6.84e-20 | 89.0 |
MsG0880044038.01.T01 | MTR_8g033000 | 34.043 | 235 | 103 | 12 | 65 | 261 | 36 | 256 | 1.33e-19 | 87.8 |
MsG0880044038.01.T01 | MTR_4g055820 | 37.356 | 174 | 70 | 9 | 83 | 233 | 122 | 279 | 4.70e-18 | 83.6 |
MsG0880044038.01.T01 | MTR_7g016930 | 33.333 | 174 | 81 | 8 | 82 | 238 | 104 | 259 | 1.03e-17 | 82.0 |
MsG0880044038.01.T01 | MTR_0129s0050 | 35.393 | 178 | 86 | 9 | 83 | 235 | 118 | 291 | 1.15e-15 | 77.0 |
MsG0880044038.01.T01 | MTR_4g102410 | 36.313 | 179 | 79 | 10 | 82 | 238 | 169 | 334 | 3.25e-15 | 75.9 |
MsG0880044038.01.T01 | MTR_2g104280 | 33.939 | 165 | 89 | 7 | 83 | 233 | 123 | 281 | 5.28e-15 | 75.1 |
MsG0880044038.01.T01 | MTR_3g011120 | 35.366 | 164 | 83 | 7 | 81 | 236 | 119 | 267 | 6.73e-15 | 74.3 |
MsG0880044038.01.T01 | MTR_7g069550 | 31.250 | 192 | 98 | 10 | 85 | 252 | 127 | 308 | 1.20e-14 | 73.9 |
MsG0880044038.01.T01 | MTR_8g464770 | 27.843 | 255 | 139 | 12 | 5 | 233 | 27 | 262 | 1.43e-14 | 73.6 |
MsG0880044038.01.T01 | MTR_7g017040 | 31.401 | 207 | 89 | 10 | 65 | 236 | 94 | 282 | 1.44e-14 | 73.6 |
MsG0880044038.01.T01 | MTR_5g074850 | 32.768 | 177 | 89 | 7 | 82 | 234 | 135 | 305 | 1.04e-13 | 71.6 |
MsG0880044038.01.T01 | MTR_2g104340 | 33.929 | 168 | 84 | 8 | 83 | 233 | 115 | 272 | 1.12e-13 | 70.9 |
MsG0880044038.01.T01 | MTR_2g065860 | 34.078 | 179 | 63 | 9 | 82 | 234 | 119 | 268 | 1.76e-13 | 70.5 |
MsG0880044038.01.T01 | MTR_8g467670 | 29.897 | 194 | 110 | 8 | 85 | 268 | 124 | 301 | 1.83e-13 | 70.5 |
MsG0880044038.01.T01 | MTR_5g096900 | 31.875 | 160 | 82 | 6 | 82 | 234 | 130 | 269 | 1.92e-13 | 69.7 |
MsG0880044038.01.T01 | MTR_5g075370 | 32.044 | 181 | 87 | 8 | 82 | 234 | 109 | 281 | 2.23e-13 | 70.5 |
MsG0880044038.01.T01 | MTR_7g017170 | 32.161 | 199 | 80 | 12 | 82 | 255 | 125 | 293 | 2.81e-13 | 69.7 |
MsG0880044038.01.T01 | MTR_7g017130 | 32.161 | 199 | 80 | 12 | 82 | 255 | 125 | 293 | 3.24e-13 | 69.7 |
MsG0880044038.01.T01 | MTR_6g461660 | 33.333 | 147 | 78 | 6 | 96 | 234 | 148 | 282 | 3.36e-13 | 69.7 |
MsG0880044038.01.T01 | MTR_4g007940 | 36.986 | 146 | 72 | 8 | 95 | 233 | 78 | 210 | 6.41e-13 | 68.6 |
MsG0880044038.01.T01 | MTR_2g034700 | 32.386 | 176 | 83 | 7 | 83 | 245 | 123 | 275 | 9.43e-13 | 68.2 |
MsG0880044038.01.T01 | MTR_5g097330 | 33.121 | 157 | 87 | 6 | 85 | 233 | 137 | 283 | 1.10e-12 | 68.2 |
MsG0880044038.01.T01 | MTR_6g086825 | 34.066 | 182 | 75 | 10 | 82 | 234 | 176 | 341 | 1.11e-12 | 68.2 |
MsG0880044038.01.T01 | MTR_2g104260 | 33.537 | 164 | 79 | 8 | 83 | 227 | 123 | 275 | 1.17e-12 | 67.0 |
MsG0880044038.01.T01 | MTR_8g041270 | 34.731 | 167 | 80 | 8 | 85 | 233 | 127 | 282 | 1.71e-12 | 67.4 |
MsG0880044038.01.T01 | MTR_0054s0090 | 30.556 | 180 | 88 | 8 | 82 | 236 | 122 | 289 | 2.55e-12 | 67.0 |
MsG0880044038.01.T01 | MTR_2g066200 | 35.393 | 178 | 59 | 12 | 83 | 233 | 120 | 268 | 4.48e-12 | 66.2 |
MsG0880044038.01.T01 | MTR_5g068490 | 31.646 | 158 | 70 | 6 | 83 | 232 | 33 | 160 | 4.77e-12 | 65.5 |
MsG0880044038.01.T01 | MTR_5g037680 | 32.515 | 163 | 73 | 6 | 82 | 234 | 127 | 262 | 6.09e-12 | 65.9 |
MsG0880044038.01.T01 | MTR_4g028510 | 34.054 | 185 | 68 | 11 | 82 | 234 | 121 | 283 | 7.94e-12 | 65.5 |
MsG0880044038.01.T01 | MTR_2g065840 | 30.093 | 216 | 105 | 11 | 74 | 270 | 112 | 300 | 8.76e-12 | 65.5 |
MsG0880044038.01.T01 | MTR_0831s0010 | 32.000 | 200 | 81 | 12 | 83 | 260 | 152 | 318 | 1.51e-11 | 64.7 |
MsG0880044038.01.T01 | MTR_5g096630 | 32.967 | 182 | 87 | 10 | 82 | 241 | 126 | 294 | 1.74e-11 | 64.3 |
MsG0880044038.01.T01 | MTR_4g130330 | 32.432 | 185 | 75 | 9 | 82 | 235 | 107 | 272 | 1.86e-11 | 64.3 |
MsG0880044038.01.T01 | MTR_6g090180 | 31.792 | 173 | 86 | 7 | 85 | 234 | 156 | 319 | 1.90e-11 | 64.3 |
MsG0880044038.01.T01 | MTR_0054s0100 | 30.270 | 185 | 84 | 10 | 82 | 236 | 122 | 291 | 2.07e-11 | 64.3 |
MsG0880044038.01.T01 | MTR_8g064890 | 28.729 | 181 | 83 | 7 | 76 | 232 | 116 | 274 | 2.25e-11 | 63.9 |
MsG0880044038.01.T01 | MTR_5g097220 | 31.937 | 191 | 89 | 9 | 82 | 238 | 114 | 297 | 3.22e-11 | 63.5 |
MsG0880044038.01.T01 | MTR_2g064950 | 28.947 | 190 | 104 | 9 | 84 | 252 | 118 | 297 | 5.26e-11 | 63.2 |
MsG0880044038.01.T01 | MTR_0129s0120 | 32.927 | 164 | 88 | 8 | 83 | 233 | 122 | 276 | 5.36e-11 | 62.8 |
MsG0880044038.01.T01 | MTR_5g092850 | 31.472 | 197 | 98 | 10 | 82 | 248 | 112 | 301 | 5.74e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 64 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGAAATTATTCATTTCT+TGG | 0.150713 | 8:-34657562 | None:intergenic |
CAATCTCTTCCTATTCAATT+TGG | 0.207618 | 8:+34656452 | MsG0880044038.01.T01:CDS |
TTGGGCTCTGCTAGTGTTCA+TGG | 0.263255 | 8:+34656704 | MsG0880044038.01.T01:intron |
CTTCAAATCTTTCAACCCTT+TGG | 0.289518 | 8:-34657482 | None:intergenic |
TTACCCAGGTATAATGTCTA+TGG | 0.313910 | 8:+34657107 | MsG0880044038.01.T01:CDS |
TGTACATCAGTCTCCCAAAA+AGG | 0.328315 | 8:-34656952 | None:intergenic |
TTCAAATCTTTCAACCCTTT+GGG | 0.338683 | 8:-34657481 | None:intergenic |
TTTAATCTTCCTCATGGGTT+TGG | 0.339150 | 8:+34656830 | MsG0880044038.01.T01:CDS |
TACGCACATGGTAATCTATA+AGG | 0.342703 | 8:+34657524 | MsG0880044038.01.T01:CDS |
GTCAAGTTGTATGAACCATT+TGG | 0.348418 | 8:+34657021 | MsG0880044038.01.T01:CDS |
GAAAAGCAAAGGAAATTGAT+TGG | 0.379855 | 8:-34656308 | None:intergenic |
TCAAGTTGTATGAACCATTT+GGG | 0.381656 | 8:+34657022 | MsG0880044038.01.T01:CDS |
AACAAGAACCGTATATCTTC+AGG | 0.383666 | 8:+34657422 | MsG0880044038.01.T01:CDS |
CAATGTTCTCCTTCGGTTGA+AGG | 0.386520 | 8:-34656805 | None:intergenic |
ATCTTCTCCCTGAAGATATA+CGG | 0.394930 | 8:-34657430 | None:intergenic |
ATAGCCTCAAGCGTGATTCT+TGG | 0.406822 | 8:+34657051 | MsG0880044038.01.T01:CDS |
GTTGAAAGATTTGAAGTTCA+AGG | 0.412712 | 8:+34657489 | MsG0880044038.01.T01:CDS |
ATTATACCTGGGTAAGAAAC+AGG | 0.422510 | 8:-34657099 | None:intergenic |
TTAAACTCAATGTTCTCCTT+CGG | 0.429504 | 8:-34656812 | None:intergenic |
TTGTTGTCGCCAAATTGAAT+AGG | 0.430498 | 8:-34656461 | None:intergenic |
AGGACACTACATCAGGTCCT+TGG | 0.467133 | 8:-34657161 | None:intergenic |
CCACCACCACCCATTTGAAA+AGG | 0.476406 | 8:-34656414 | None:intergenic |
TTCGTTACCACCCACTTGAA+AGG | 0.480945 | 8:-34656510 | None:intergenic |
ATTGAGTTTAATCTTCCTCA+TGG | 0.482319 | 8:+34656824 | MsG0880044038.01.T01:CDS |
TCGTTACCACCCACTTGAAA+GGG | 0.482877 | 8:-34656509 | None:intergenic |
CAAATTGAATAGGAAGAGAT+TGG | 0.485504 | 8:-34656451 | None:intergenic |
TCCTTCGGTTGAAGGCTAGC+AGG | 0.490953 | 8:-34656797 | None:intergenic |
CACTTGAAAGGGAAAGAGAT+TGG | 0.492852 | 8:-34656498 | None:intergenic |
ATGATGCCTGTTTCTTACCC+AGG | 0.493000 | 8:+34657093 | MsG0880044038.01.T01:CDS |
GGACACTACATCAGGTCCTT+GGG | 0.496079 | 8:-34657160 | None:intergenic |
CAGGGAGAAGATTCTGAGCT+AGG | 0.497615 | 8:+34657441 | MsG0880044038.01.T01:CDS |
ATGTCTATGGTGAACTTGAA+TGG | 0.497655 | 8:+34657120 | MsG0880044038.01.T01:CDS |
GCCTCAAGCGTGATTCTTGG+AGG | 0.514158 | 8:+34657054 | MsG0880044038.01.T01:CDS |
AAATTATTCATTTCTTGGAA+AGG | 0.520793 | 8:-34657557 | None:intergenic |
GAATAGGAAGAGATTGGCAT+TGG | 0.520986 | 8:-34656445 | None:intergenic |
AAAGGGAAAGAGATTGGCAT+TGG | 0.524584 | 8:-34656492 | None:intergenic |
TCCTGCTAGCCTTCAACCGA+AGG | 0.531090 | 8:+34656796 | MsG0880044038.01.T01:CDS |
GCTTGATTTAAGTACCCAAA+GGG | 0.538057 | 8:+34657467 | MsG0880044038.01.T01:CDS |
TCTTACATCTGAAGAAGGTA+AGG | 0.539664 | 8:-34657217 | None:intergenic |
CCTTGTTGTTGAAGAGGAAG+TGG | 0.544167 | 8:-34656277 | None:intergenic |
TTCACCATAGACATTATACC+TGG | 0.546273 | 8:-34657111 | None:intergenic |
GAGGCTATACATCTCCCAAA+TGG | 0.548757 | 8:-34657036 | None:intergenic |
GCACTCTTTGTCTCTACCGA+GGG | 0.550943 | 8:+34656726 | MsG0880044038.01.T01:CDS |
ATTGTGGAACCCTGCTACCG+CGG | 0.554065 | 8:+34656760 | MsG0880044038.01.T01:CDS |
TTGAGTTTAATCTTCCTCAT+GGG | 0.555673 | 8:+34656825 | MsG0880044038.01.T01:CDS |
ACAAGAACCGTATATCTTCA+GGG | 0.558154 | 8:+34657423 | MsG0880044038.01.T01:CDS |
CACTACCTTGACATGAATGA+CGG | 0.560785 | 8:+34656973 | MsG0880044038.01.T01:CDS |
AAGTCGAAGGACACTACATC+AGG | 0.568222 | 8:-34657168 | None:intergenic |
CTATGTCTTACATCTGAAGA+AGG | 0.568788 | 8:-34657222 | None:intergenic |
GGCACTCTTTGTCTCTACCG+AGG | 0.575597 | 8:+34656725 | MsG0880044038.01.T01:CDS |
GGCTTGATTTAAGTACCCAA+AGG | 0.584581 | 8:+34657466 | MsG0880044038.01.T01:CDS |
GAGAAGATTCTGAGCTAGGA+TGG | 0.585409 | 8:+34657445 | MsG0880044038.01.T01:CDS |
TCCTCCAAGAATCACGCTTG+AGG | 0.595091 | 8:-34657055 | None:intergenic |
TGTCTCCTTGCTAAAGTCGA+AGG | 0.597182 | 8:-34657181 | None:intergenic |
GAGGGTTAACGACTGTATTG+TGG | 0.599446 | 8:+34656744 | MsG0880044038.01.T01:CDS |
ACCACCCATTTGAAAAGCAA+AGG | 0.601056 | 8:-34656319 | None:intergenic |
TTGTGACCTTGTTGTTGAAG+AGG | 0.606865 | 8:-34656283 | None:intergenic |
CAGGTCCTTGGGTCAACCAG+TGG | 0.622596 | 8:-34657149 | None:intergenic |
GATTCTTGGAGGAAACTCGA+TGG | 0.625713 | 8:+34657065 | MsG0880044038.01.T01:CDS |
CCACTTCCTCTTCAACAACA+AGG | 0.630274 | 8:+34656277 | MsG0880044038.01.T01:CDS |
ACAATACAGTCGTTAACCCT+CGG | 0.633315 | 8:-34656742 | None:intergenic |
AGTGTCCTTCGACTTTAGCA+AGG | 0.641778 | 8:+34657176 | MsG0880044038.01.T01:CDS |
TCACCATAGACATTATACCT+GGG | 0.708403 | 8:-34657110 | None:intergenic |
CAGTCATAACCAAACCCATG+AGG | 0.713816 | 8:-34656839 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAGACAATTGAAATAATATA+AGG | - | Chr8:34657386-34657405 | None:intergenic | 20.0% |
!!! | AATCTTTTTCCTTTTCAAAT+GGG | + | Chr8:34656405-34656424 | MsG0880044038.01.T01:CDS | 20.0% |
! | AAAACCCATATATGAAAATC+AGG | - | Chr8:34657314-34657333 | None:intergenic | 25.0% |
! | CATTTGAAAAGGAAAAAGAT+TGG | - | Chr8:34656406-34656425 | None:intergenic | 25.0% |
!! | CAATCTTTTTCCTTTTCAAA+TGG | + | Chr8:34656404-34656423 | MsG0880044038.01.T01:CDS | 25.0% |
!! | CTGTGTTACAAATGATTTTA+AGG | + | Chr8:34656859-34656878 | MsG0880044038.01.T01:CDS | 25.0% |
!! | GATTTTCATATATGGGTTTT+GGG | + | Chr8:34657314-34657333 | MsG0880044038.01.T01:intron | 25.0% |
!! | TGATTTTCATATATGGGTTT+TGG | + | Chr8:34657313-34657332 | MsG0880044038.01.T01:intron | 25.0% |
!!! | AATTTCCTTTGCTTTTCAAA+TGG | + | Chr8:34656314-34656333 | MsG0880044038.01.T01:CDS | 25.0% |
!!! | ATTTCCTTTGCTTTTCAAAT+GGG | + | Chr8:34656315-34656334 | MsG0880044038.01.T01:CDS | 25.0% |
!!! | CAAATGATTTTAAGGTGATT+CGG | + | Chr8:34656867-34656886 | MsG0880044038.01.T01:CDS | 25.0% |
!!! | CAATCTCTTTCTTTTGAAAT+GGG | + | Chr8:34656589-34656608 | MsG0880044038.01.T01:intron | 25.0% |
AATGAAATAGCAGGAGTAAA+AGG | - | Chr8:34656684-34656703 | None:intergenic | 30.0% | |
AGAATTTGAAGGTGATGATT+GGG | + | Chr8:34656907-34656926 | MsG0880044038.01.T01:intron | 30.0% | |
AGATATCCCTTAGAATTTGA+AGG | + | Chr8:34656896-34656915 | MsG0880044038.01.T01:intron | 30.0% | |
ATCATCACCTTCAAATTCTA+AGG | - | Chr8:34656906-34656925 | None:intergenic | 30.0% | |
ATTGAGTTTAATCTTCCTCA+TGG | + | Chr8:34656824-34656843 | MsG0880044038.01.T01:CDS | 30.0% | |
CAAATTGAATAGGAAGAGAT+TGG | - | Chr8:34656454-34656473 | None:intergenic | 30.0% | |
CAATCTCTTCCTATTCAATT+TGG | + | Chr8:34656452-34656471 | MsG0880044038.01.T01:CDS | 30.0% | |
CCATTTCAAAAGAAAGAGAT+TGG | - | Chr8:34656591-34656610 | None:intergenic | 30.0% | |
CTGTAATCTATAATTACGAC+AGG | + | Chr8:34657285-34657304 | MsG0880044038.01.T01:intron | 30.0% | |
GAAAAGCAAAGGAAATTGAT+TGG | - | Chr8:34656311-34656330 | None:intergenic | 30.0% | |
TAGAATTTGAAGGTGATGAT+TGG | + | Chr8:34656906-34656925 | MsG0880044038.01.T01:intron | 30.0% | |
TCATCACCTTCAAATTCTAA+GGG | - | Chr8:34656905-34656924 | None:intergenic | 30.0% | |
TTAAACTCAATGTTCTCCTT+CGG | - | Chr8:34656815-34656834 | None:intergenic | 30.0% | |
TTCAAATCTTTCAACCCTTT+GGG | - | Chr8:34657484-34657503 | None:intergenic | 30.0% | |
TTGAGTTTAATCTTCCTCAT+GGG | + | Chr8:34656825-34656844 | MsG0880044038.01.T01:CDS | 30.0% | |
! | GTTGAAAGATTTGAAGTTCA+AGG | + | Chr8:34657489-34657508 | MsG0880044038.01.T01:CDS | 30.0% |
! | TCAAGTTGTATGAACCATTT+GGG | + | Chr8:34657022-34657041 | MsG0880044038.01.T01:CDS | 30.0% |
!! | AATGACATTGCTTTTCTAGA+GGG | + | Chr8:34656360-34656379 | MsG0880044038.01.T01:CDS | 30.0% |
!! | CCAATCTCTTTCTTTTGAAA+TGG | + | Chr8:34656588-34656607 | MsG0880044038.01.T01:intron | 30.0% |
!!! | GACTTTGCTTTTTTTGAAGT+GGG | + | Chr8:34656545-34656564 | MsG0880044038.01.T01:intron | 30.0% |
!!! | TACTCCTGCTATTTCATTTT+GGG | + | Chr8:34656686-34656705 | MsG0880044038.01.T01:intron | 30.0% |
!!! | TGACTTTGCTTTTTTTGAAG+TGG | + | Chr8:34656544-34656563 | MsG0880044038.01.T01:intron | 30.0% |
!!! | TTACTCCTGCTATTTCATTT+TGG | + | Chr8:34656685-34656704 | MsG0880044038.01.T01:intron | 30.0% |
AAAAACCGTCATTCATGTCA+AGG | - | Chr8:34656981-34657000 | None:intergenic | 35.0% | |
AAATAGCAGGAGTAAAAGGA+AGG | - | Chr8:34656680-34656699 | None:intergenic | 35.0% | |
AACAAGAACCGTATATCTTC+AGG | + | Chr8:34657422-34657441 | MsG0880044038.01.T01:CDS | 35.0% | |
AATAGCAGGAGTAAAAGGAA+GGG | - | Chr8:34656679-34656698 | None:intergenic | 35.0% | |
AATCCCTTTCCCTTTCAATT+GGG | + | Chr8:34656637-34656656 | MsG0880044038.01.T01:intron | 35.0% | |
ACAAGAACCGTATATCTTCA+GGG | + | Chr8:34657423-34657442 | MsG0880044038.01.T01:CDS | 35.0% | |
ATCTTCTCCCTGAAGATATA+CGG | - | Chr8:34657433-34657452 | None:intergenic | 35.0% | |
ATGTCTATGGTGAACTTGAA+TGG | + | Chr8:34657120-34657139 | MsG0880044038.01.T01:CDS | 35.0% | |
ATTATACCTGGGTAAGAAAC+AGG | - | Chr8:34657102-34657121 | None:intergenic | 35.0% | |
CTATGTCTTACATCTGAAGA+AGG | - | Chr8:34657225-34657244 | None:intergenic | 35.0% | |
CTTCAAATCTTTCAACCCTT+TGG | - | Chr8:34657485-34657504 | None:intergenic | 35.0% | |
GCTTGATTTAAGTACCCAAA+GGG | + | Chr8:34657467-34657486 | MsG0880044038.01.T01:CDS | 35.0% | |
TACGCACATGGTAATCTATA+AGG | + | Chr8:34657524-34657543 | MsG0880044038.01.T01:CDS | 35.0% | |
TCACCATAGACATTATACCT+GGG | - | Chr8:34657113-34657132 | None:intergenic | 35.0% | |
TCTTACATCTGAAGAAGGTA+AGG | - | Chr8:34657220-34657239 | None:intergenic | 35.0% | |
TTACCCAGGTATAATGTCTA+TGG | + | Chr8:34657107-34657126 | MsG0880044038.01.T01:CDS | 35.0% | |
TTCACCATAGACATTATACC+TGG | - | Chr8:34657114-34657133 | None:intergenic | 35.0% | |
TTGTTGTCGCCAAATTGAAT+AGG | - | Chr8:34656464-34656483 | None:intergenic | 35.0% | |
TTTAATCTTCCTCATGGGTT+TGG | + | Chr8:34656830-34656849 | MsG0880044038.01.T01:CDS | 35.0% | |
! | AATCTCTTTCCCTTTCAAGT+GGG | + | Chr8:34656500-34656519 | MsG0880044038.01.T01:intron | 35.0% |
! | CTTTTTCCTTTTCAAATGGG+TGG | + | Chr8:34656408-34656427 | MsG0880044038.01.T01:CDS | 35.0% |
! | GACGCCTGATTTTCATATAT+GGG | + | Chr8:34657307-34657326 | MsG0880044038.01.T01:intron | 35.0% |
! | GTCAAGTTGTATGAACCATT+TGG | + | Chr8:34657021-34657040 | MsG0880044038.01.T01:CDS | 35.0% |
! | TGACATGAATGACGGTTTTT+GGG | + | Chr8:34656981-34657000 | MsG0880044038.01.T01:CDS | 35.0% |
! | TTGACATGAATGACGGTTTT+TGG | + | Chr8:34656980-34656999 | MsG0880044038.01.T01:CDS | 35.0% |
!! | CAATGACATTGCTTTTCTAG+AGG | + | Chr8:34656359-34656378 | MsG0880044038.01.T01:CDS | 35.0% |
!!! | TGATTTTAAGGTGATTCGGA+AGG | + | Chr8:34656871-34656890 | MsG0880044038.01.T01:CDS | 35.0% |
!!! | TTTTTTGAAGTGGGTGATGT+GGG | + | Chr8:34656554-34656573 | MsG0880044038.01.T01:intron | 35.0% |
!!! | TTTTTTTGAAGTGGGTGATG+TGG | + | Chr8:34656553-34656572 | MsG0880044038.01.T01:intron | 35.0% |
AAAGGGAAAGAGATTGGCAT+TGG | - | Chr8:34656495-34656514 | None:intergenic | 40.0% | |
AAGTGGGTGTAAAGGAATCA+TGG | + | Chr8:34657339-34657358 | MsG0880044038.01.T01:intron | 40.0% | |
ACAATACAGTCGTTAACCCT+CGG | - | Chr8:34656745-34656764 | None:intergenic | 40.0% | |
ACCACCCATTTGAAAAGCAA+AGG | - | Chr8:34656322-34656341 | None:intergenic | 40.0% | |
AGAGCCCAAAATGAAATAGC+AGG | - | Chr8:34656693-34656712 | None:intergenic | 40.0% | |
ATCACCCAATTGAAAGGGAA+AGG | - | Chr8:34656644-34656663 | None:intergenic | 40.0% | |
ATTGGCATCACCCAATTGAA+AGG | - | Chr8:34656650-34656669 | None:intergenic | 40.0% | |
ATTGTCTGTCCTATCTCAGT+AGG | + | Chr8:34657398-34657417 | MsG0880044038.01.T01:intron | 40.0% | |
CAATCCCTTTCCCTTTCAAT+TGG | + | Chr8:34656636-34656655 | MsG0880044038.01.T01:intron | 40.0% | |
CAATCTCTTTCCCTTTCAAG+TGG | + | Chr8:34656499-34656518 | MsG0880044038.01.T01:intron | 40.0% | |
CAATTGAAAGGGAAAGGGAT+TGG | - | Chr8:34656638-34656657 | None:intergenic | 40.0% | |
CACTACCTTGACATGAATGA+CGG | + | Chr8:34656973-34656992 | MsG0880044038.01.T01:CDS | 40.0% | |
CACTTGAAAGGGAAAGAGAT+TGG | - | Chr8:34656501-34656520 | None:intergenic | 40.0% | |
GAATAGGAAGAGATTGGCAT+TGG | - | Chr8:34656448-34656467 | None:intergenic | 40.0% | |
GGCTTGATTTAAGTACCCAA+AGG | + | Chr8:34657466-34657485 | MsG0880044038.01.T01:CDS | 40.0% | |
GTACATCAGTCTCCCAAAAA+GGG | - | Chr8:34656954-34656973 | None:intergenic | 40.0% | |
TCACCCAATTGAAAGGGAAA+GGG | - | Chr8:34656643-34656662 | None:intergenic | 40.0% | |
TGTACATCAGTCTCCCAAAA+AGG | - | Chr8:34656955-34656974 | None:intergenic | 40.0% | |
TTCTTGTTCCCTACTGAGAT+AGG | - | Chr8:34657410-34657429 | None:intergenic | 40.0% | |
TTGGCATCACCCAATTGAAA+GGG | - | Chr8:34656649-34656668 | None:intergenic | 40.0% | |
TTGTCTGTCCTATCTCAGTA+GGG | + | Chr8:34657399-34657418 | MsG0880044038.01.T01:intron | 40.0% | |
! | AGGAACGATTTTAAACTCCG+CGG | - | Chr8:34656780-34656799 | None:intergenic | 40.0% |
! | GGACGCCTGATTTTCATATA+TGG | + | Chr8:34657306-34657325 | MsG0880044038.01.T01:intron | 40.0% |
! | TAAAAGGAAGGGATTGGCAT+TGG | - | Chr8:34656668-34656687 | None:intergenic | 40.0% |
! | TTTCCTTTTCAAATGGGTGG+TGG | + | Chr8:34656411-34656430 | MsG0880044038.01.T01:CDS | 40.0% |
!! | ACTTGAATGGATTTTGCCAC+TGG | + | Chr8:34657133-34657152 | MsG0880044038.01.T01:CDS | 40.0% |
!! | TCCTTTGCTTTTCAAATGGG+TGG | + | Chr8:34656318-34656337 | MsG0880044038.01.T01:CDS | 40.0% |
!! | TTGTGACCTTGTTGTTGAAG+AGG | - | Chr8:34656286-34656305 | None:intergenic | 40.0% |
!! | TTTGCTTTTCAAATGGGTGG+TGG | + | Chr8:34656321-34656340 | MsG0880044038.01.T01:CDS | 40.0% |
!!! | ATATGGGTTTTGGGTGAAGT+GGG | + | Chr8:34657323-34657342 | MsG0880044038.01.T01:intron | 40.0% |
!!! | TATATGGGTTTTGGGTGAAG+TGG | + | Chr8:34657322-34657341 | MsG0880044038.01.T01:intron | 40.0% |
AAGTCGAAGGACACTACATC+AGG | - | Chr8:34657171-34657190 | None:intergenic | 45.0% | |
AGTGTCCTTCGACTTTAGCA+AGG | + | Chr8:34657176-34657195 | MsG0880044038.01.T01:CDS | 45.0% | |
ATAGCCTCAAGCGTGATTCT+TGG | + | Chr8:34657051-34657070 | MsG0880044038.01.T01:CDS | 45.0% | |
CAAAAAGGGTCATCCTTGTC+CGG | - | Chr8:34656940-34656959 | None:intergenic | 45.0% | |
CAATGTTCTCCTTCGGTTGA+AGG | - | Chr8:34656808-34656827 | None:intergenic | 45.0% | |
CAGGAGTAAAAGGAAGGGAT+TGG | - | Chr8:34656674-34656693 | None:intergenic | 45.0% | |
CAGTCATAACCAAACCCATG+AGG | - | Chr8:34656842-34656861 | None:intergenic | 45.0% | |
CCACTTCCTCTTCAACAACA+AGG | + | Chr8:34656277-34656296 | MsG0880044038.01.T01:CDS | 45.0% | |
GAGAAGATTCTGAGCTAGGA+TGG | + | Chr8:34657445-34657464 | MsG0880044038.01.T01:CDS | 45.0% | |
GAGGCTATACATCTCCCAAA+TGG | - | Chr8:34657039-34657058 | None:intergenic | 45.0% | |
GAGGGTTAACGACTGTATTG+TGG | + | Chr8:34656744-34656763 | MsG0880044038.01.T01:CDS | 45.0% | |
GATCGTACTCGTTTGCTTTG+TGG | + | Chr8:34657244-34657263 | MsG0880044038.01.T01:intron | 45.0% | |
GATTCTTGGAGGAAACTCGA+TGG | + | Chr8:34657065-34657084 | MsG0880044038.01.T01:CDS | 45.0% | |
TCGTTACCACCCACTTGAAA+GGG | - | Chr8:34656512-34656531 | None:intergenic | 45.0% | |
TGTCTCCTTGCTAAAGTCGA+AGG | - | Chr8:34657184-34657203 | None:intergenic | 45.0% | |
TTCGTTACCACCCACTTGAA+AGG | - | Chr8:34656513-34656532 | None:intergenic | 45.0% | |
TTTGGGTGAAGTGGGTGTAA+AGG | + | Chr8:34657331-34657350 | MsG0880044038.01.T01:intron | 45.0% | |
! | AAAGGGAAAGGGATTGGCAT+TGG | - | Chr8:34656632-34656651 | None:intergenic | 45.0% |
! | ATGATGCCTGTTTCTTACCC+AGG | + | Chr8:34657093-34657112 | MsG0880044038.01.T01:CDS | 45.0% |
! | ATTTTAAACTCCGCGGTAGC+AGG | - | Chr8:34656773-34656792 | None:intergenic | 45.0% |
! | GGACAAGGATGACCCTTTTT+GGG | + | Chr8:34656939-34656958 | MsG0880044038.01.T01:intron | 45.0% |
! | TGGACCAAGCTCTTTGTTGT+CGG | + | Chr8:34657359-34657378 | MsG0880044038.01.T01:intron | 45.0% |
! | TTTTAAACTCCGCGGTAGCA+GGG | - | Chr8:34656772-34656791 | None:intergenic | 45.0% |
!! | CATGAATGACGGTTTTTGGG+AGG | + | Chr8:34656984-34657003 | MsG0880044038.01.T01:CDS | 45.0% |
!! | CCTTGTTGTTGAAGAGGAAG+TGG | - | Chr8:34656280-34656299 | None:intergenic | 45.0% |
!! | CGAGTCATTTTGTACGCACA+TGG | + | Chr8:34657512-34657531 | MsG0880044038.01.T01:CDS | 45.0% |
!! | GCTTTTCTAGAGGGTGATGT+GGG | + | Chr8:34656369-34656388 | MsG0880044038.01.T01:CDS | 45.0% |
!! | GTGATGATTGGGTTTGTTGC+CGG | + | Chr8:34656918-34656937 | MsG0880044038.01.T01:intron | 45.0% |
!! | TGCTTTTCTAGAGGGTGATG+TGG | + | Chr8:34656368-34656387 | MsG0880044038.01.T01:CDS | 45.0% |
AGGACACTACATCAGGTCCT+TGG | - | Chr8:34657164-34657183 | None:intergenic | 50.0% | |
CAGGGAGAAGATTCTGAGCT+AGG | + | Chr8:34657441-34657460 | MsG0880044038.01.T01:CDS | 50.0% | |
CCACCACCACCCATTTGAAA+AGG | - | Chr8:34656417-34656436 | None:intergenic | 50.0% | |
GCACTCTTTGTCTCTACCGA+GGG | + | Chr8:34656726-34656745 | MsG0880044038.01.T01:CDS | 50.0% | |
GGACACTACATCAGGTCCTT+GGG | - | Chr8:34657163-34657182 | None:intergenic | 50.0% | |
TCCTCCAAGAATCACGCTTG+AGG | - | Chr8:34657058-34657077 | None:intergenic | 50.0% | |
TTGGGCTCTGCTAGTGTTCA+TGG | + | Chr8:34656704-34656723 | MsG0880044038.01.T01:intron | 50.0% | |
! | CGGACAAGGATGACCCTTTT+TGG | + | Chr8:34656938-34656957 | MsG0880044038.01.T01:intron | 50.0% |
! | CTCTTTCCCTTTCAAGTGGG+TGG | + | Chr8:34656503-34656522 | MsG0880044038.01.T01:intron | 50.0% |
! | GGACCAAGCTCTTTGTTGTC+GGG | + | Chr8:34657360-34657379 | MsG0880044038.01.T01:intron | 50.0% |
!! | ACGGTTTTTGGGAGGAGAAG+GGG | + | Chr8:34656992-34657011 | MsG0880044038.01.T01:CDS | 50.0% |
!! | ATTGGGTTTGTTGCCGGACA+AGG | + | Chr8:34656924-34656943 | MsG0880044038.01.T01:intron | 50.0% |
!! | CCTTTTCAAATGGGTGGTGG+TGG | + | Chr8:34656414-34656433 | MsG0880044038.01.T01:CDS | 50.0% |
!! | GACGGTTTTTGGGAGGAGAA+GGG | + | Chr8:34656991-34657010 | MsG0880044038.01.T01:CDS | 50.0% |
!! | TGACGGTTTTTGGGAGGAGA+AGG | + | Chr8:34656990-34657009 | MsG0880044038.01.T01:CDS | 50.0% |
!! | TTTTGCCACTGGTTGACCCA+AGG | + | Chr8:34657144-34657163 | MsG0880044038.01.T01:CDS | 50.0% |
AGGCCCGACAACAAAGAGCT+TGG | - | Chr8:34657366-34657385 | None:intergenic | 55.0% | |
ATTGTGGAACCCTGCTACCG+CGG | + | Chr8:34656760-34656779 | MsG0880044038.01.T01:CDS | 55.0% | |
GCCTCAAGCGTGATTCTTGG+AGG | + | Chr8:34657054-34657073 | MsG0880044038.01.T01:CDS | 55.0% | |
GGCACTCTTTGTCTCTACCG+AGG | + | Chr8:34656725-34656744 | MsG0880044038.01.T01:CDS | 55.0% | |
TCCTTCGGTTGAAGGCTAGC+AGG | - | Chr8:34656800-34656819 | None:intergenic | 55.0% | |
!! | TCCTGCTAGCCTTCAACCGA+AGG | + | Chr8:34656796-34656815 | MsG0880044038.01.T01:CDS | 55.0% |
CAGGTCCTTGGGTCAACCAG+TGG | - | Chr8:34657152-34657171 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 34656273 | 34657572 | 34656273 | ID=MsG0880044038.01;Name=MsG0880044038.01 |
Chr8 | mRNA | 34656273 | 34657572 | 34656273 | ID=MsG0880044038.01.T01;Parent=MsG0880044038.01;Name=MsG0880044038.01.T01;_AED=0.47;_eAED=0.59;_QI=0|0|0|1|1|1|4|0|286 |
Chr8 | exon | 34656273 | 34656517 | 34656273 | ID=MsG0880044038.01.T01:exon:3635;Parent=MsG0880044038.01.T01 |
Chr8 | exon | 34656718 | 34656892 | 34656718 | ID=MsG0880044038.01.T01:exon:3634;Parent=MsG0880044038.01.T01 |
Chr8 | exon | 34656946 | 34657233 | 34656946 | ID=MsG0880044038.01.T01:exon:3633;Parent=MsG0880044038.01.T01 |
Chr8 | exon | 34657420 | 34657572 | 34657420 | ID=MsG0880044038.01.T01:exon:3632;Parent=MsG0880044038.01.T01 |
Chr8 | CDS | 34656273 | 34656517 | 34656273 | ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01 |
Chr8 | CDS | 34656718 | 34656892 | 34656718 | ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01 |
Chr8 | CDS | 34656946 | 34657233 | 34656946 | ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01 |
Chr8 | CDS | 34657420 | 34657572 | 34657420 | ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01 |
Gene Sequence |
Protein sequence |