AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044038.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044038.01.T01 MTR_8g046220 57.203 236 50 7 32 242 88 297 6.30e-75 234
MsG0880044038.01.T01 MTR_8g046220 72.549 51 13 1 233 282 350 400 4.98e-16 77.8
MsG0880044038.01.T01 MTR_8g046200 53.165 237 76 7 32 240 83 312 1.04e-69 222
MsG0880044038.01.T01 MTR_8g046200 60.000 55 21 1 229 282 362 416 1.63e-12 67.4
MsG0880044038.01.T01 MTR_8g046310 46.847 222 68 11 32 242 87 269 1.58e-41 147
MsG0880044038.01.T01 MTR_8g046310 65.455 55 18 1 229 282 318 372 1.58e-15 76.3
MsG0880044038.01.T01 MTR_1g047080 39.200 250 73 7 82 282 58 277 1.08e-39 140
MsG0880044038.01.T01 MTR_8g035690 50.311 161 50 6 103 239 36 190 2.32e-39 139
MsG0880044038.01.T01 MTR_8g033140 35.714 280 121 13 5 236 34 302 1.27e-30 119
MsG0880044038.01.T01 MTR_8g033110 41.711 187 66 6 82 239 120 292 3.82e-30 117
MsG0880044038.01.T01 MTR_8g018110 32.862 283 98 10 82 282 119 391 1.71e-29 115
MsG0880044038.01.T01 MTR_1g053510 41.176 187 70 10 74 233 114 287 9.81e-29 114
MsG0880044038.01.T01 MTR_8g032980 37.395 238 99 10 65 262 88 315 1.17e-28 113
MsG0880044038.01.T01 MTR_8g033090 40.107 187 67 7 82 239 120 290 1.53e-26 107
MsG0880044038.01.T01 MTR_4g117550 30.159 252 115 10 83 282 125 367 6.84e-20 89.0
MsG0880044038.01.T01 MTR_8g033000 34.043 235 103 12 65 261 36 256 1.33e-19 87.8
MsG0880044038.01.T01 MTR_4g055820 37.356 174 70 9 83 233 122 279 4.70e-18 83.6
MsG0880044038.01.T01 MTR_7g016930 33.333 174 81 8 82 238 104 259 1.03e-17 82.0
MsG0880044038.01.T01 MTR_0129s0050 35.393 178 86 9 83 235 118 291 1.15e-15 77.0
MsG0880044038.01.T01 MTR_4g102410 36.313 179 79 10 82 238 169 334 3.25e-15 75.9
MsG0880044038.01.T01 MTR_2g104280 33.939 165 89 7 83 233 123 281 5.28e-15 75.1
MsG0880044038.01.T01 MTR_3g011120 35.366 164 83 7 81 236 119 267 6.73e-15 74.3
MsG0880044038.01.T01 MTR_7g069550 31.250 192 98 10 85 252 127 308 1.20e-14 73.9
MsG0880044038.01.T01 MTR_8g464770 27.843 255 139 12 5 233 27 262 1.43e-14 73.6
MsG0880044038.01.T01 MTR_7g017040 31.401 207 89 10 65 236 94 282 1.44e-14 73.6
MsG0880044038.01.T01 MTR_5g074850 32.768 177 89 7 82 234 135 305 1.04e-13 71.6
MsG0880044038.01.T01 MTR_2g104340 33.929 168 84 8 83 233 115 272 1.12e-13 70.9
MsG0880044038.01.T01 MTR_2g065860 34.078 179 63 9 82 234 119 268 1.76e-13 70.5
MsG0880044038.01.T01 MTR_8g467670 29.897 194 110 8 85 268 124 301 1.83e-13 70.5
MsG0880044038.01.T01 MTR_5g096900 31.875 160 82 6 82 234 130 269 1.92e-13 69.7
MsG0880044038.01.T01 MTR_5g075370 32.044 181 87 8 82 234 109 281 2.23e-13 70.5
MsG0880044038.01.T01 MTR_7g017170 32.161 199 80 12 82 255 125 293 2.81e-13 69.7
MsG0880044038.01.T01 MTR_7g017130 32.161 199 80 12 82 255 125 293 3.24e-13 69.7
MsG0880044038.01.T01 MTR_6g461660 33.333 147 78 6 96 234 148 282 3.36e-13 69.7
MsG0880044038.01.T01 MTR_4g007940 36.986 146 72 8 95 233 78 210 6.41e-13 68.6
MsG0880044038.01.T01 MTR_2g034700 32.386 176 83 7 83 245 123 275 9.43e-13 68.2
MsG0880044038.01.T01 MTR_5g097330 33.121 157 87 6 85 233 137 283 1.10e-12 68.2
MsG0880044038.01.T01 MTR_6g086825 34.066 182 75 10 82 234 176 341 1.11e-12 68.2
MsG0880044038.01.T01 MTR_2g104260 33.537 164 79 8 83 227 123 275 1.17e-12 67.0
MsG0880044038.01.T01 MTR_8g041270 34.731 167 80 8 85 233 127 282 1.71e-12 67.4
MsG0880044038.01.T01 MTR_0054s0090 30.556 180 88 8 82 236 122 289 2.55e-12 67.0
MsG0880044038.01.T01 MTR_2g066200 35.393 178 59 12 83 233 120 268 4.48e-12 66.2
MsG0880044038.01.T01 MTR_5g068490 31.646 158 70 6 83 232 33 160 4.77e-12 65.5
MsG0880044038.01.T01 MTR_5g037680 32.515 163 73 6 82 234 127 262 6.09e-12 65.9
MsG0880044038.01.T01 MTR_4g028510 34.054 185 68 11 82 234 121 283 7.94e-12 65.5
MsG0880044038.01.T01 MTR_2g065840 30.093 216 105 11 74 270 112 300 8.76e-12 65.5
MsG0880044038.01.T01 MTR_0831s0010 32.000 200 81 12 83 260 152 318 1.51e-11 64.7
MsG0880044038.01.T01 MTR_5g096630 32.967 182 87 10 82 241 126 294 1.74e-11 64.3
MsG0880044038.01.T01 MTR_4g130330 32.432 185 75 9 82 235 107 272 1.86e-11 64.3
MsG0880044038.01.T01 MTR_6g090180 31.792 173 86 7 85 234 156 319 1.90e-11 64.3
MsG0880044038.01.T01 MTR_0054s0100 30.270 185 84 10 82 236 122 291 2.07e-11 64.3
MsG0880044038.01.T01 MTR_8g064890 28.729 181 83 7 76 232 116 274 2.25e-11 63.9
MsG0880044038.01.T01 MTR_5g097220 31.937 191 89 9 82 238 114 297 3.22e-11 63.5
MsG0880044038.01.T01 MTR_2g064950 28.947 190 104 9 84 252 118 297 5.26e-11 63.2
MsG0880044038.01.T01 MTR_0129s0120 32.927 164 88 8 83 233 122 276 5.36e-11 62.8
MsG0880044038.01.T01 MTR_5g092850 31.472 197 98 10 82 248 112 301 5.74e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGAAATTATTCATTTCT+TGG 0.150713 8:-34657562 None:intergenic
CAATCTCTTCCTATTCAATT+TGG 0.207618 8:+34656452 MsG0880044038.01.T01:CDS
TTGGGCTCTGCTAGTGTTCA+TGG 0.263255 8:+34656704 MsG0880044038.01.T01:intron
CTTCAAATCTTTCAACCCTT+TGG 0.289518 8:-34657482 None:intergenic
TTACCCAGGTATAATGTCTA+TGG 0.313910 8:+34657107 MsG0880044038.01.T01:CDS
TGTACATCAGTCTCCCAAAA+AGG 0.328315 8:-34656952 None:intergenic
TTCAAATCTTTCAACCCTTT+GGG 0.338683 8:-34657481 None:intergenic
TTTAATCTTCCTCATGGGTT+TGG 0.339150 8:+34656830 MsG0880044038.01.T01:CDS
TACGCACATGGTAATCTATA+AGG 0.342703 8:+34657524 MsG0880044038.01.T01:CDS
GTCAAGTTGTATGAACCATT+TGG 0.348418 8:+34657021 MsG0880044038.01.T01:CDS
GAAAAGCAAAGGAAATTGAT+TGG 0.379855 8:-34656308 None:intergenic
TCAAGTTGTATGAACCATTT+GGG 0.381656 8:+34657022 MsG0880044038.01.T01:CDS
AACAAGAACCGTATATCTTC+AGG 0.383666 8:+34657422 MsG0880044038.01.T01:CDS
CAATGTTCTCCTTCGGTTGA+AGG 0.386520 8:-34656805 None:intergenic
ATCTTCTCCCTGAAGATATA+CGG 0.394930 8:-34657430 None:intergenic
ATAGCCTCAAGCGTGATTCT+TGG 0.406822 8:+34657051 MsG0880044038.01.T01:CDS
GTTGAAAGATTTGAAGTTCA+AGG 0.412712 8:+34657489 MsG0880044038.01.T01:CDS
ATTATACCTGGGTAAGAAAC+AGG 0.422510 8:-34657099 None:intergenic
TTAAACTCAATGTTCTCCTT+CGG 0.429504 8:-34656812 None:intergenic
TTGTTGTCGCCAAATTGAAT+AGG 0.430498 8:-34656461 None:intergenic
AGGACACTACATCAGGTCCT+TGG 0.467133 8:-34657161 None:intergenic
CCACCACCACCCATTTGAAA+AGG 0.476406 8:-34656414 None:intergenic
TTCGTTACCACCCACTTGAA+AGG 0.480945 8:-34656510 None:intergenic
ATTGAGTTTAATCTTCCTCA+TGG 0.482319 8:+34656824 MsG0880044038.01.T01:CDS
TCGTTACCACCCACTTGAAA+GGG 0.482877 8:-34656509 None:intergenic
CAAATTGAATAGGAAGAGAT+TGG 0.485504 8:-34656451 None:intergenic
TCCTTCGGTTGAAGGCTAGC+AGG 0.490953 8:-34656797 None:intergenic
CACTTGAAAGGGAAAGAGAT+TGG 0.492852 8:-34656498 None:intergenic
ATGATGCCTGTTTCTTACCC+AGG 0.493000 8:+34657093 MsG0880044038.01.T01:CDS
GGACACTACATCAGGTCCTT+GGG 0.496079 8:-34657160 None:intergenic
CAGGGAGAAGATTCTGAGCT+AGG 0.497615 8:+34657441 MsG0880044038.01.T01:CDS
ATGTCTATGGTGAACTTGAA+TGG 0.497655 8:+34657120 MsG0880044038.01.T01:CDS
GCCTCAAGCGTGATTCTTGG+AGG 0.514158 8:+34657054 MsG0880044038.01.T01:CDS
AAATTATTCATTTCTTGGAA+AGG 0.520793 8:-34657557 None:intergenic
GAATAGGAAGAGATTGGCAT+TGG 0.520986 8:-34656445 None:intergenic
AAAGGGAAAGAGATTGGCAT+TGG 0.524584 8:-34656492 None:intergenic
TCCTGCTAGCCTTCAACCGA+AGG 0.531090 8:+34656796 MsG0880044038.01.T01:CDS
GCTTGATTTAAGTACCCAAA+GGG 0.538057 8:+34657467 MsG0880044038.01.T01:CDS
TCTTACATCTGAAGAAGGTA+AGG 0.539664 8:-34657217 None:intergenic
CCTTGTTGTTGAAGAGGAAG+TGG 0.544167 8:-34656277 None:intergenic
TTCACCATAGACATTATACC+TGG 0.546273 8:-34657111 None:intergenic
GAGGCTATACATCTCCCAAA+TGG 0.548757 8:-34657036 None:intergenic
GCACTCTTTGTCTCTACCGA+GGG 0.550943 8:+34656726 MsG0880044038.01.T01:CDS
ATTGTGGAACCCTGCTACCG+CGG 0.554065 8:+34656760 MsG0880044038.01.T01:CDS
TTGAGTTTAATCTTCCTCAT+GGG 0.555673 8:+34656825 MsG0880044038.01.T01:CDS
ACAAGAACCGTATATCTTCA+GGG 0.558154 8:+34657423 MsG0880044038.01.T01:CDS
CACTACCTTGACATGAATGA+CGG 0.560785 8:+34656973 MsG0880044038.01.T01:CDS
AAGTCGAAGGACACTACATC+AGG 0.568222 8:-34657168 None:intergenic
CTATGTCTTACATCTGAAGA+AGG 0.568788 8:-34657222 None:intergenic
GGCACTCTTTGTCTCTACCG+AGG 0.575597 8:+34656725 MsG0880044038.01.T01:CDS
GGCTTGATTTAAGTACCCAA+AGG 0.584581 8:+34657466 MsG0880044038.01.T01:CDS
GAGAAGATTCTGAGCTAGGA+TGG 0.585409 8:+34657445 MsG0880044038.01.T01:CDS
TCCTCCAAGAATCACGCTTG+AGG 0.595091 8:-34657055 None:intergenic
TGTCTCCTTGCTAAAGTCGA+AGG 0.597182 8:-34657181 None:intergenic
GAGGGTTAACGACTGTATTG+TGG 0.599446 8:+34656744 MsG0880044038.01.T01:CDS
ACCACCCATTTGAAAAGCAA+AGG 0.601056 8:-34656319 None:intergenic
TTGTGACCTTGTTGTTGAAG+AGG 0.606865 8:-34656283 None:intergenic
CAGGTCCTTGGGTCAACCAG+TGG 0.622596 8:-34657149 None:intergenic
GATTCTTGGAGGAAACTCGA+TGG 0.625713 8:+34657065 MsG0880044038.01.T01:CDS
CCACTTCCTCTTCAACAACA+AGG 0.630274 8:+34656277 MsG0880044038.01.T01:CDS
ACAATACAGTCGTTAACCCT+CGG 0.633315 8:-34656742 None:intergenic
AGTGTCCTTCGACTTTAGCA+AGG 0.641778 8:+34657176 MsG0880044038.01.T01:CDS
TCACCATAGACATTATACCT+GGG 0.708403 8:-34657110 None:intergenic
CAGTCATAACCAAACCCATG+AGG 0.713816 8:-34656839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGACAATTGAAATAATATA+AGG - Chr8:34657386-34657405 None:intergenic 20.0%
!!! AATCTTTTTCCTTTTCAAAT+GGG + Chr8:34656405-34656424 MsG0880044038.01.T01:CDS 20.0%
! AAAACCCATATATGAAAATC+AGG - Chr8:34657314-34657333 None:intergenic 25.0%
! CATTTGAAAAGGAAAAAGAT+TGG - Chr8:34656406-34656425 None:intergenic 25.0%
!! CAATCTTTTTCCTTTTCAAA+TGG + Chr8:34656404-34656423 MsG0880044038.01.T01:CDS 25.0%
!! CTGTGTTACAAATGATTTTA+AGG + Chr8:34656859-34656878 MsG0880044038.01.T01:CDS 25.0%
!! GATTTTCATATATGGGTTTT+GGG + Chr8:34657314-34657333 MsG0880044038.01.T01:intron 25.0%
!! TGATTTTCATATATGGGTTT+TGG + Chr8:34657313-34657332 MsG0880044038.01.T01:intron 25.0%
!!! AATTTCCTTTGCTTTTCAAA+TGG + Chr8:34656314-34656333 MsG0880044038.01.T01:CDS 25.0%
!!! ATTTCCTTTGCTTTTCAAAT+GGG + Chr8:34656315-34656334 MsG0880044038.01.T01:CDS 25.0%
!!! CAAATGATTTTAAGGTGATT+CGG + Chr8:34656867-34656886 MsG0880044038.01.T01:CDS 25.0%
!!! CAATCTCTTTCTTTTGAAAT+GGG + Chr8:34656589-34656608 MsG0880044038.01.T01:intron 25.0%
AATGAAATAGCAGGAGTAAA+AGG - Chr8:34656684-34656703 None:intergenic 30.0%
AGAATTTGAAGGTGATGATT+GGG + Chr8:34656907-34656926 MsG0880044038.01.T01:intron 30.0%
AGATATCCCTTAGAATTTGA+AGG + Chr8:34656896-34656915 MsG0880044038.01.T01:intron 30.0%
ATCATCACCTTCAAATTCTA+AGG - Chr8:34656906-34656925 None:intergenic 30.0%
ATTGAGTTTAATCTTCCTCA+TGG + Chr8:34656824-34656843 MsG0880044038.01.T01:CDS 30.0%
CAAATTGAATAGGAAGAGAT+TGG - Chr8:34656454-34656473 None:intergenic 30.0%
CAATCTCTTCCTATTCAATT+TGG + Chr8:34656452-34656471 MsG0880044038.01.T01:CDS 30.0%
CCATTTCAAAAGAAAGAGAT+TGG - Chr8:34656591-34656610 None:intergenic 30.0%
CTGTAATCTATAATTACGAC+AGG + Chr8:34657285-34657304 MsG0880044038.01.T01:intron 30.0%
GAAAAGCAAAGGAAATTGAT+TGG - Chr8:34656311-34656330 None:intergenic 30.0%
TAGAATTTGAAGGTGATGAT+TGG + Chr8:34656906-34656925 MsG0880044038.01.T01:intron 30.0%
TCATCACCTTCAAATTCTAA+GGG - Chr8:34656905-34656924 None:intergenic 30.0%
TTAAACTCAATGTTCTCCTT+CGG - Chr8:34656815-34656834 None:intergenic 30.0%
TTCAAATCTTTCAACCCTTT+GGG - Chr8:34657484-34657503 None:intergenic 30.0%
TTGAGTTTAATCTTCCTCAT+GGG + Chr8:34656825-34656844 MsG0880044038.01.T01:CDS 30.0%
! GTTGAAAGATTTGAAGTTCA+AGG + Chr8:34657489-34657508 MsG0880044038.01.T01:CDS 30.0%
! TCAAGTTGTATGAACCATTT+GGG + Chr8:34657022-34657041 MsG0880044038.01.T01:CDS 30.0%
!! AATGACATTGCTTTTCTAGA+GGG + Chr8:34656360-34656379 MsG0880044038.01.T01:CDS 30.0%
!! CCAATCTCTTTCTTTTGAAA+TGG + Chr8:34656588-34656607 MsG0880044038.01.T01:intron 30.0%
!!! GACTTTGCTTTTTTTGAAGT+GGG + Chr8:34656545-34656564 MsG0880044038.01.T01:intron 30.0%
!!! TACTCCTGCTATTTCATTTT+GGG + Chr8:34656686-34656705 MsG0880044038.01.T01:intron 30.0%
!!! TGACTTTGCTTTTTTTGAAG+TGG + Chr8:34656544-34656563 MsG0880044038.01.T01:intron 30.0%
!!! TTACTCCTGCTATTTCATTT+TGG + Chr8:34656685-34656704 MsG0880044038.01.T01:intron 30.0%
AAAAACCGTCATTCATGTCA+AGG - Chr8:34656981-34657000 None:intergenic 35.0%
AAATAGCAGGAGTAAAAGGA+AGG - Chr8:34656680-34656699 None:intergenic 35.0%
AACAAGAACCGTATATCTTC+AGG + Chr8:34657422-34657441 MsG0880044038.01.T01:CDS 35.0%
AATAGCAGGAGTAAAAGGAA+GGG - Chr8:34656679-34656698 None:intergenic 35.0%
AATCCCTTTCCCTTTCAATT+GGG + Chr8:34656637-34656656 MsG0880044038.01.T01:intron 35.0%
ACAAGAACCGTATATCTTCA+GGG + Chr8:34657423-34657442 MsG0880044038.01.T01:CDS 35.0%
ATCTTCTCCCTGAAGATATA+CGG - Chr8:34657433-34657452 None:intergenic 35.0%
ATGTCTATGGTGAACTTGAA+TGG + Chr8:34657120-34657139 MsG0880044038.01.T01:CDS 35.0%
ATTATACCTGGGTAAGAAAC+AGG - Chr8:34657102-34657121 None:intergenic 35.0%
CTATGTCTTACATCTGAAGA+AGG - Chr8:34657225-34657244 None:intergenic 35.0%
CTTCAAATCTTTCAACCCTT+TGG - Chr8:34657485-34657504 None:intergenic 35.0%
GCTTGATTTAAGTACCCAAA+GGG + Chr8:34657467-34657486 MsG0880044038.01.T01:CDS 35.0%
TACGCACATGGTAATCTATA+AGG + Chr8:34657524-34657543 MsG0880044038.01.T01:CDS 35.0%
TCACCATAGACATTATACCT+GGG - Chr8:34657113-34657132 None:intergenic 35.0%
TCTTACATCTGAAGAAGGTA+AGG - Chr8:34657220-34657239 None:intergenic 35.0%
TTACCCAGGTATAATGTCTA+TGG + Chr8:34657107-34657126 MsG0880044038.01.T01:CDS 35.0%
TTCACCATAGACATTATACC+TGG - Chr8:34657114-34657133 None:intergenic 35.0%
TTGTTGTCGCCAAATTGAAT+AGG - Chr8:34656464-34656483 None:intergenic 35.0%
TTTAATCTTCCTCATGGGTT+TGG + Chr8:34656830-34656849 MsG0880044038.01.T01:CDS 35.0%
! AATCTCTTTCCCTTTCAAGT+GGG + Chr8:34656500-34656519 MsG0880044038.01.T01:intron 35.0%
! CTTTTTCCTTTTCAAATGGG+TGG + Chr8:34656408-34656427 MsG0880044038.01.T01:CDS 35.0%
! GACGCCTGATTTTCATATAT+GGG + Chr8:34657307-34657326 MsG0880044038.01.T01:intron 35.0%
! GTCAAGTTGTATGAACCATT+TGG + Chr8:34657021-34657040 MsG0880044038.01.T01:CDS 35.0%
! TGACATGAATGACGGTTTTT+GGG + Chr8:34656981-34657000 MsG0880044038.01.T01:CDS 35.0%
! TTGACATGAATGACGGTTTT+TGG + Chr8:34656980-34656999 MsG0880044038.01.T01:CDS 35.0%
!! CAATGACATTGCTTTTCTAG+AGG + Chr8:34656359-34656378 MsG0880044038.01.T01:CDS 35.0%
!!! TGATTTTAAGGTGATTCGGA+AGG + Chr8:34656871-34656890 MsG0880044038.01.T01:CDS 35.0%
!!! TTTTTTGAAGTGGGTGATGT+GGG + Chr8:34656554-34656573 MsG0880044038.01.T01:intron 35.0%
!!! TTTTTTTGAAGTGGGTGATG+TGG + Chr8:34656553-34656572 MsG0880044038.01.T01:intron 35.0%
AAAGGGAAAGAGATTGGCAT+TGG - Chr8:34656495-34656514 None:intergenic 40.0%
AAGTGGGTGTAAAGGAATCA+TGG + Chr8:34657339-34657358 MsG0880044038.01.T01:intron 40.0%
ACAATACAGTCGTTAACCCT+CGG - Chr8:34656745-34656764 None:intergenic 40.0%
ACCACCCATTTGAAAAGCAA+AGG - Chr8:34656322-34656341 None:intergenic 40.0%
AGAGCCCAAAATGAAATAGC+AGG - Chr8:34656693-34656712 None:intergenic 40.0%
ATCACCCAATTGAAAGGGAA+AGG - Chr8:34656644-34656663 None:intergenic 40.0%
ATTGGCATCACCCAATTGAA+AGG - Chr8:34656650-34656669 None:intergenic 40.0%
ATTGTCTGTCCTATCTCAGT+AGG + Chr8:34657398-34657417 MsG0880044038.01.T01:intron 40.0%
CAATCCCTTTCCCTTTCAAT+TGG + Chr8:34656636-34656655 MsG0880044038.01.T01:intron 40.0%
CAATCTCTTTCCCTTTCAAG+TGG + Chr8:34656499-34656518 MsG0880044038.01.T01:intron 40.0%
CAATTGAAAGGGAAAGGGAT+TGG - Chr8:34656638-34656657 None:intergenic 40.0%
CACTACCTTGACATGAATGA+CGG + Chr8:34656973-34656992 MsG0880044038.01.T01:CDS 40.0%
CACTTGAAAGGGAAAGAGAT+TGG - Chr8:34656501-34656520 None:intergenic 40.0%
GAATAGGAAGAGATTGGCAT+TGG - Chr8:34656448-34656467 None:intergenic 40.0%
GGCTTGATTTAAGTACCCAA+AGG + Chr8:34657466-34657485 MsG0880044038.01.T01:CDS 40.0%
GTACATCAGTCTCCCAAAAA+GGG - Chr8:34656954-34656973 None:intergenic 40.0%
TCACCCAATTGAAAGGGAAA+GGG - Chr8:34656643-34656662 None:intergenic 40.0%
TGTACATCAGTCTCCCAAAA+AGG - Chr8:34656955-34656974 None:intergenic 40.0%
TTCTTGTTCCCTACTGAGAT+AGG - Chr8:34657410-34657429 None:intergenic 40.0%
TTGGCATCACCCAATTGAAA+GGG - Chr8:34656649-34656668 None:intergenic 40.0%
TTGTCTGTCCTATCTCAGTA+GGG + Chr8:34657399-34657418 MsG0880044038.01.T01:intron 40.0%
! AGGAACGATTTTAAACTCCG+CGG - Chr8:34656780-34656799 None:intergenic 40.0%
! GGACGCCTGATTTTCATATA+TGG + Chr8:34657306-34657325 MsG0880044038.01.T01:intron 40.0%
! TAAAAGGAAGGGATTGGCAT+TGG - Chr8:34656668-34656687 None:intergenic 40.0%
! TTTCCTTTTCAAATGGGTGG+TGG + Chr8:34656411-34656430 MsG0880044038.01.T01:CDS 40.0%
!! ACTTGAATGGATTTTGCCAC+TGG + Chr8:34657133-34657152 MsG0880044038.01.T01:CDS 40.0%
!! TCCTTTGCTTTTCAAATGGG+TGG + Chr8:34656318-34656337 MsG0880044038.01.T01:CDS 40.0%
!! TTGTGACCTTGTTGTTGAAG+AGG - Chr8:34656286-34656305 None:intergenic 40.0%
!! TTTGCTTTTCAAATGGGTGG+TGG + Chr8:34656321-34656340 MsG0880044038.01.T01:CDS 40.0%
!!! ATATGGGTTTTGGGTGAAGT+GGG + Chr8:34657323-34657342 MsG0880044038.01.T01:intron 40.0%
!!! TATATGGGTTTTGGGTGAAG+TGG + Chr8:34657322-34657341 MsG0880044038.01.T01:intron 40.0%
AAGTCGAAGGACACTACATC+AGG - Chr8:34657171-34657190 None:intergenic 45.0%
AGTGTCCTTCGACTTTAGCA+AGG + Chr8:34657176-34657195 MsG0880044038.01.T01:CDS 45.0%
ATAGCCTCAAGCGTGATTCT+TGG + Chr8:34657051-34657070 MsG0880044038.01.T01:CDS 45.0%
CAAAAAGGGTCATCCTTGTC+CGG - Chr8:34656940-34656959 None:intergenic 45.0%
CAATGTTCTCCTTCGGTTGA+AGG - Chr8:34656808-34656827 None:intergenic 45.0%
CAGGAGTAAAAGGAAGGGAT+TGG - Chr8:34656674-34656693 None:intergenic 45.0%
CAGTCATAACCAAACCCATG+AGG - Chr8:34656842-34656861 None:intergenic 45.0%
CCACTTCCTCTTCAACAACA+AGG + Chr8:34656277-34656296 MsG0880044038.01.T01:CDS 45.0%
GAGAAGATTCTGAGCTAGGA+TGG + Chr8:34657445-34657464 MsG0880044038.01.T01:CDS 45.0%
GAGGCTATACATCTCCCAAA+TGG - Chr8:34657039-34657058 None:intergenic 45.0%
GAGGGTTAACGACTGTATTG+TGG + Chr8:34656744-34656763 MsG0880044038.01.T01:CDS 45.0%
GATCGTACTCGTTTGCTTTG+TGG + Chr8:34657244-34657263 MsG0880044038.01.T01:intron 45.0%
GATTCTTGGAGGAAACTCGA+TGG + Chr8:34657065-34657084 MsG0880044038.01.T01:CDS 45.0%
TCGTTACCACCCACTTGAAA+GGG - Chr8:34656512-34656531 None:intergenic 45.0%
TGTCTCCTTGCTAAAGTCGA+AGG - Chr8:34657184-34657203 None:intergenic 45.0%
TTCGTTACCACCCACTTGAA+AGG - Chr8:34656513-34656532 None:intergenic 45.0%
TTTGGGTGAAGTGGGTGTAA+AGG + Chr8:34657331-34657350 MsG0880044038.01.T01:intron 45.0%
! AAAGGGAAAGGGATTGGCAT+TGG - Chr8:34656632-34656651 None:intergenic 45.0%
! ATGATGCCTGTTTCTTACCC+AGG + Chr8:34657093-34657112 MsG0880044038.01.T01:CDS 45.0%
! ATTTTAAACTCCGCGGTAGC+AGG - Chr8:34656773-34656792 None:intergenic 45.0%
! GGACAAGGATGACCCTTTTT+GGG + Chr8:34656939-34656958 MsG0880044038.01.T01:intron 45.0%
! TGGACCAAGCTCTTTGTTGT+CGG + Chr8:34657359-34657378 MsG0880044038.01.T01:intron 45.0%
! TTTTAAACTCCGCGGTAGCA+GGG - Chr8:34656772-34656791 None:intergenic 45.0%
!! CATGAATGACGGTTTTTGGG+AGG + Chr8:34656984-34657003 MsG0880044038.01.T01:CDS 45.0%
!! CCTTGTTGTTGAAGAGGAAG+TGG - Chr8:34656280-34656299 None:intergenic 45.0%
!! CGAGTCATTTTGTACGCACA+TGG + Chr8:34657512-34657531 MsG0880044038.01.T01:CDS 45.0%
!! GCTTTTCTAGAGGGTGATGT+GGG + Chr8:34656369-34656388 MsG0880044038.01.T01:CDS 45.0%
!! GTGATGATTGGGTTTGTTGC+CGG + Chr8:34656918-34656937 MsG0880044038.01.T01:intron 45.0%
!! TGCTTTTCTAGAGGGTGATG+TGG + Chr8:34656368-34656387 MsG0880044038.01.T01:CDS 45.0%
AGGACACTACATCAGGTCCT+TGG - Chr8:34657164-34657183 None:intergenic 50.0%
CAGGGAGAAGATTCTGAGCT+AGG + Chr8:34657441-34657460 MsG0880044038.01.T01:CDS 50.0%
CCACCACCACCCATTTGAAA+AGG - Chr8:34656417-34656436 None:intergenic 50.0%
GCACTCTTTGTCTCTACCGA+GGG + Chr8:34656726-34656745 MsG0880044038.01.T01:CDS 50.0%
GGACACTACATCAGGTCCTT+GGG - Chr8:34657163-34657182 None:intergenic 50.0%
TCCTCCAAGAATCACGCTTG+AGG - Chr8:34657058-34657077 None:intergenic 50.0%
TTGGGCTCTGCTAGTGTTCA+TGG + Chr8:34656704-34656723 MsG0880044038.01.T01:intron 50.0%
! CGGACAAGGATGACCCTTTT+TGG + Chr8:34656938-34656957 MsG0880044038.01.T01:intron 50.0%
! CTCTTTCCCTTTCAAGTGGG+TGG + Chr8:34656503-34656522 MsG0880044038.01.T01:intron 50.0%
! GGACCAAGCTCTTTGTTGTC+GGG + Chr8:34657360-34657379 MsG0880044038.01.T01:intron 50.0%
!! ACGGTTTTTGGGAGGAGAAG+GGG + Chr8:34656992-34657011 MsG0880044038.01.T01:CDS 50.0%
!! ATTGGGTTTGTTGCCGGACA+AGG + Chr8:34656924-34656943 MsG0880044038.01.T01:intron 50.0%
!! CCTTTTCAAATGGGTGGTGG+TGG + Chr8:34656414-34656433 MsG0880044038.01.T01:CDS 50.0%
!! GACGGTTTTTGGGAGGAGAA+GGG + Chr8:34656991-34657010 MsG0880044038.01.T01:CDS 50.0%
!! TGACGGTTTTTGGGAGGAGA+AGG + Chr8:34656990-34657009 MsG0880044038.01.T01:CDS 50.0%
!! TTTTGCCACTGGTTGACCCA+AGG + Chr8:34657144-34657163 MsG0880044038.01.T01:CDS 50.0%
AGGCCCGACAACAAAGAGCT+TGG - Chr8:34657366-34657385 None:intergenic 55.0%
ATTGTGGAACCCTGCTACCG+CGG + Chr8:34656760-34656779 MsG0880044038.01.T01:CDS 55.0%
GCCTCAAGCGTGATTCTTGG+AGG + Chr8:34657054-34657073 MsG0880044038.01.T01:CDS 55.0%
GGCACTCTTTGTCTCTACCG+AGG + Chr8:34656725-34656744 MsG0880044038.01.T01:CDS 55.0%
TCCTTCGGTTGAAGGCTAGC+AGG - Chr8:34656800-34656819 None:intergenic 55.0%
!! TCCTGCTAGCCTTCAACCGA+AGG + Chr8:34656796-34656815 MsG0880044038.01.T01:CDS 55.0%
CAGGTCCTTGGGTCAACCAG+TGG - Chr8:34657152-34657171 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 34656273 34657572 34656273 ID=MsG0880044038.01;Name=MsG0880044038.01
Chr8 mRNA 34656273 34657572 34656273 ID=MsG0880044038.01.T01;Parent=MsG0880044038.01;Name=MsG0880044038.01.T01;_AED=0.47;_eAED=0.59;_QI=0|0|0|1|1|1|4|0|286
Chr8 exon 34656273 34656517 34656273 ID=MsG0880044038.01.T01:exon:3635;Parent=MsG0880044038.01.T01
Chr8 exon 34656718 34656892 34656718 ID=MsG0880044038.01.T01:exon:3634;Parent=MsG0880044038.01.T01
Chr8 exon 34656946 34657233 34656946 ID=MsG0880044038.01.T01:exon:3633;Parent=MsG0880044038.01.T01
Chr8 exon 34657420 34657572 34657420 ID=MsG0880044038.01.T01:exon:3632;Parent=MsG0880044038.01.T01
Chr8 CDS 34656273 34656517 34656273 ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01
Chr8 CDS 34656718 34656892 34656718 ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01
Chr8 CDS 34656946 34657233 34656946 ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01
Chr8 CDS 34657420 34657572 34657420 ID=MsG0880044038.01.T01:cds;Parent=MsG0880044038.01.T01
Gene Sequence

>MsG0880044038.01.T01

ATGGCCACTTCCTCTTCAACAACAAGGTCACAATGCCAATCAATTTCCTTTGCTTTTCAAATGGGTGGTGGTAACGAAATCAATGTCAATGACATTGCTTTTCTAGAGGGTGATGTGGGTCATGAAAATGCCAATCTTTTTCCTTTTCAAATGGGTGGTGGTGGTAACAATGCCAATGCCAATCTCTTCCTATTCAATTTGGCGACAACAATGACAATGCCAATGCCAATCTCTTTCCCTTTCAATGTTCATGGCACTCTTTGTCTCTACCGAGGGTTAACGACTGTATTGTGGAACCCTGCTACCGCGGAGTTTAAAATCGTTCCTGCTAGCCTTCAACCGAAGGAGAACATTGAGTTTAATCTTCCTCATGGGTTTGGTTATGACTGTGTTACAAATGATTTTAAGGTGATTCGGAAGGATGACCCTTTTTGGGAGACTGATGTACACTACCTTGACATGAATGACGGTTTTTGGGAGGAGAAGGGGCTCATTGTCAAGTTGTATGAACCATTTGGGAGATGTATAGCCTCAAGCGTGATTCTTGGAGGAAACTCGATGGATTTGATGATGCCTGTTTCTTACCCAGGTATAATGTCTATGGTGAACTTGAATGGATTTTGCCACTGGTTGACCCAAGGACCTGATGTAGTGTCCTTCGACTTTAGCAAGGAGACATTCTTTGCAACTACCTTACCTTCTTCAGATGGAACAAGAACCGTATATCTTCAGGGAGAAGATTCTGAGCTAGGATGGCTTGATTTAAGTACCCAAAGGGTTGAAAGATTTGAAGTTCAAGGCGAGTCATTTTGTACGCACATGGTAATCTATAAGGAAAATCTTCTCCTTTCCAAGAAATGA

Protein sequence

>MsG0880044038.01.T01

MATSSSTTRSQCQSISFAFQMGGGNEINVNDIAFLEGDVGHENANLFPFQMGGGGNNANANLFLFNLATTMTMPMPISFPFNVHGTLCLYRGLTTVLWNPATAEFKIVPASLQPKENIEFNLPHGFGYDCVTNDFKVIRKDDPFWETDVHYLDMNDGFWEEKGLIVKLYEPFGRCIASSVILGGNSMDLMMPVSYPGIMSMVNLNGFCHWLTQGPDVVSFDFSKETFFATTLPSSDGTRTVYLQGEDSELGWLDLSTQRVERFEVQGESFCTHMVIYKENLLLSKK*