AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043378.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043378.01.T01 MTR_8g033110 64.326 356 44 5 1 280 53 401 8.62e-146 421
MsG0880043378.01.T01 MTR_8g033090 64.553 347 48 4 1 273 53 398 6.77e-141 409
MsG0880043378.01.T01 MTR_8g018110 53.561 351 65 7 1 273 53 383 8.20e-106 319
MsG0880043378.01.T01 MTR_8g033140 40.857 350 114 7 1 267 58 397 9.03e-70 227
MsG0880043378.01.T01 MTR_8g032980 39.394 363 124 6 1 275 55 409 3.32e-65 215
MsG0880043378.01.T01 MTR_1g053510 38.793 348 129 8 1 273 54 392 5.54e-62 206
MsG0880043378.01.T01 MTR_8g046220 34.473 351 138 8 1 275 56 390 3.47e-51 177
MsG0880043378.01.T01 MTR_8g046310 37.304 319 133 10 1 267 55 358 2.99e-47 166
MsG0880043378.01.T01 MTR_8g033000 32.682 358 149 8 1 275 3 351 1.51e-45 162
MsG0880043378.01.T01 MTR_8g046200 31.285 358 138 7 5 265 54 400 4.09e-43 156
MsG0880043378.01.T01 MTR_8g035690 35.127 316 119 11 1 265 1 281 1.34e-42 152
MsG0880043378.01.T01 MTR_8g063440 33.934 333 146 11 1 273 51 369 4.35e-34 131
MsG0880043378.01.T01 MTR_0129s0070 32.523 329 148 12 1 265 56 374 2.01e-30 121
MsG0880043378.01.T01 MTR_6g080680 41.000 200 97 5 82 267 183 375 2.37e-29 118
MsG0880043378.01.T01 MTR_0129s0120 30.699 329 154 10 1 265 56 374 4.73e-29 117
MsG0880043378.01.T01 MTR_5g022850 31.908 304 119 12 36 265 43 332 3.09e-28 114
MsG0880043378.01.T01 MTR_7g111700 32.710 321 137 16 5 265 43 344 7.85e-28 114
MsG0880043378.01.T01 MTR_6g086825 32.386 352 147 15 1 274 109 447 1.06e-27 114
MsG0880043378.01.T01 MTR_6g090180 30.058 346 146 11 1 265 86 416 1.13e-27 114
MsG0880043378.01.T01 MTR_8g012090 32.013 303 136 10 1 256 55 334 1.98e-27 112
MsG0880043378.01.T01 MTR_8g464770 30.183 328 160 13 2 273 52 366 4.21e-27 112
MsG0880043378.01.T01 MTR_5g092860 28.402 338 157 10 1 273 41 358 5.86e-27 111
MsG0880043378.01.T01 MTR_1g047080 31.090 312 115 7 1 265 3 261 6.36e-27 109
MsG0880043378.01.T01 MTR_5g097330 30.946 349 134 18 1 265 55 380 7.34e-27 111
MsG0880043378.01.T01 MTR_6g478230 32.424 330 152 15 1 267 66 387 1.16e-26 111
MsG0880043378.01.T01 MTR_5g097850 48.760 121 61 1 145 264 103 223 1.98e-26 107
MsG0880043378.01.T01 MTR_2g021770 28.488 344 158 11 1 265 51 385 4.93e-26 109
MsG0880043378.01.T01 MTR_2g038680 31.792 346 143 13 1 265 55 388 6.55e-26 108
MsG0880043378.01.T01 MTR_5g059430 35.000 240 127 7 60 273 176 412 1.02e-25 108
MsG0880043378.01.T01 MTR_0129s0050 28.857 350 154 12 1 268 53 389 1.17e-25 108
MsG0880043378.01.T01 MTR_5g086590 37.273 220 107 9 60 259 23 231 1.45e-25 104
MsG0880043378.01.T01 MTR_5g097350 30.581 327 150 14 1 265 55 366 1.54e-24 104
MsG0880043378.01.T01 MTR_5g091140 31.132 318 148 14 1 261 87 390 2.72e-24 104
MsG0880043378.01.T01 MTR_1g007450 28.916 332 161 9 1 265 51 374 2.77e-24 104
MsG0880043378.01.T01 MTR_0054s0100 34.766 256 99 13 62 266 149 387 5.86e-24 103
MsG0880043378.01.T01 MTR_4g007940 29.907 321 148 13 15 265 7 320 1.04e-23 101
MsG0880043378.01.T01 MTR_5g074850 29.703 303 143 12 60 303 158 449 1.13e-23 104
MsG0880043378.01.T01 MTR_6g078010 31.609 348 162 14 1 287 3 335 1.44e-23 101
MsG0880043378.01.T01 MTR_2g021950 34.848 264 124 11 44 273 136 385 1.52e-23 102
MsG0880043378.01.T01 MTR_1g007410 31.792 346 133 17 1 265 61 384 1.53e-23 102
MsG0880043378.01.T01 MTR_0831s0010 29.538 325 159 12 1 267 89 401 1.87e-23 102
MsG0880043378.01.T01 MTR_5g097220 33.462 260 106 10 60 265 138 384 2.30e-23 101
MsG0880043378.01.T01 MTR_0054s0090 34.387 253 104 12 62 266 147 385 3.00e-23 101
MsG0880043378.01.T01 MTR_5g069390 33.740 246 124 10 60 277 170 404 3.91e-23 102
MsG0880043378.01.T01 MTR_6g461660 29.129 333 156 12 1 265 58 378 5.61e-23 100
MsG0880043378.01.T01 MTR_2g066150 37.073 205 100 9 82 273 158 346 5.80e-23 99.8
MsG0880043378.01.T01 MTR_6g004450 34.335 233 104 10 66 265 31 247 1.11e-22 97.4
MsG0880043378.01.T01 MTR_5g076490 33.435 329 147 17 1 270 3 318 1.51e-22 98.2
MsG0880043378.01.T01 MTR_7g079640 30.599 317 154 14 1 265 52 354 3.44e-22 97.8
MsG0880043378.01.T01 MTR_4g102410 30.172 348 145 16 1 267 100 430 5.60e-22 98.2
MsG0880043378.01.T01 MTR_6g079770 41.558 154 72 4 130 273 258 403 5.89e-22 97.8
MsG0880043378.01.T01 MTR_5g037680 33.058 242 116 9 59 273 150 372 6.95e-22 97.8
MsG0880043378.01.T01 MTR_2g064950 29.538 325 156 11 1 261 49 364 7.66e-22 97.1
MsG0880043378.01.T01 MTR_2g021920 34.764 233 104 7 77 268 31 256 8.20e-22 94.7
MsG0880043378.01.T01 MTR_5g096910 30.769 299 123 12 31 262 86 367 8.49e-22 97.1
MsG0880043378.01.T01 MTR_7g069550 30.792 341 160 14 1 273 53 385 1.06e-21 96.7
MsG0880043378.01.T01 MTR_3g011120 35.088 228 112 8 60 265 145 358 1.06e-21 96.3
MsG0880043378.01.T01 MTR_6g079810 30.063 316 128 13 32 265 137 441 1.15e-21 97.4
MsG0880043378.01.T01 MTR_7g017040 28.655 342 166 10 1 274 55 386 1.34e-21 96.7
MsG0880043378.01.T01 MTR_2g022000 33.333 255 116 10 60 270 156 400 1.45e-21 96.7
MsG0880043378.01.T01 MTR_7g017170 28.963 328 159 13 1 264 57 374 3.79e-21 95.1
MsG0880043378.01.T01 MTR_5g064700 29.213 356 153 13 1 265 1 348 3.91e-21 94.7
MsG0880043378.01.T01 MTR_0134s0060 33.716 261 106 11 61 266 143 391 3.97e-21 95.1
MsG0880043378.01.T01 MTR_7g017130 29.141 326 157 13 1 262 57 372 9.36e-21 94.0
MsG0880043378.01.T01 MTR_5g096630 29.330 358 154 15 1 273 57 400 1.17e-20 94.0
MsG0880043378.01.T01 MTR_4g130330 29.900 301 128 11 39 266 79 369 1.73e-20 93.2
MsG0880043378.01.T01 MTR_6g087620 31.915 235 111 11 60 268 58 269 1.98e-20 91.3
MsG0880043378.01.T01 MTR_5g097680 29.526 359 152 14 1 265 56 407 3.14e-20 92.8
MsG0880043378.01.T01 MTR_5g023970 37.500 144 76 4 130 267 40 175 5.18e-20 88.2
MsG0880043378.01.T01 MTR_3g018750 36.129 155 73 3 125 266 77 218 9.05e-20 88.6
MsG0880043378.01.T01 MTR_5g072060 30.599 317 151 12 1 262 45 347 1.01e-19 92.0
MsG0880043378.01.T01 MTR_8g467670 27.124 306 150 10 20 268 71 360 1.23e-19 90.5
MsG0880043378.01.T01 MTR_2g021800 29.050 358 155 15 1 270 55 401 1.58e-19 90.5
MsG0880043378.01.T01 MTR_2g065860 27.761 335 171 12 1 274 51 375 2.16e-19 89.7
MsG0880043378.01.T01 MTR_3g030620 37.589 141 77 4 132 265 23 159 2.61e-19 85.5
MsG0880043378.01.T01 MTR_6g079790 32.301 226 113 7 82 273 76 295 2.94e-19 88.2
MsG0880043378.01.T01 MTR_2g104340 29.586 338 152 15 2 265 50 375 5.54e-19 88.6
MsG0880043378.01.T01 MTR_4g014370 32.520 246 117 9 62 277 170 396 6.41e-19 88.6
MsG0880043378.01.T01 MTR_2g066200 33.486 218 109 7 82 273 167 374 6.58e-19 88.6
MsG0880043378.01.T01 MTR_5g075370 29.344 259 122 10 60 267 132 380 6.60e-19 89.7
MsG0880043378.01.T01 MTR_2g066170 34.071 226 107 8 68 267 157 366 6.78e-19 88.2
MsG0880043378.01.T01 MTR_8g064790 27.358 318 143 11 1 277 54 324 7.04e-19 87.8
MsG0880043378.01.T01 MTR_5g074800 29.248 359 165 17 1 290 1 339 1.51e-18 86.7
MsG0880043378.01.T01 MTR_4g028750 32.381 210 105 8 82 265 178 376 1.57e-18 87.4
MsG0880043378.01.T01 MTR_4g028510 29.530 298 129 10 39 265 93 380 1.64e-18 87.8
MsG0880043378.01.T01 MTR_8g041270 29.830 352 142 15 2 265 51 385 1.69e-18 87.4
MsG0880043378.01.T01 MTR_5g092850 31.111 225 99 6 82 265 169 378 1.80e-18 87.4
MsG0880043378.01.T01 MTR_2g065840 28.267 329 160 11 1 266 51 366 2.86e-18 86.7
MsG0880043378.01.T01 MTR_6g079730 41.270 126 62 4 139 262 10 125 5.03e-18 80.9
MsG0880043378.01.T01 MTR_4g055820 29.467 319 135 12 2 243 54 359 5.73e-18 85.1
MsG0880043378.01.T01 MTR_5g066420 38.931 131 71 3 145 273 23 146 7.20e-18 80.5
MsG0880043378.01.T01 MTR_4g028660 34.884 215 95 8 82 265 177 377 9.32e-18 85.1
MsG0880043378.01.T01 MTR_4g027450 34.884 215 95 8 82 265 177 377 9.32e-18 85.1
MsG0880043378.01.T01 MTR_6g090260 38.732 142 66 5 130 260 104 235 1.31e-17 82.8
MsG0880043378.01.T01 MTR_8g064890 32.800 250 115 11 60 277 147 375 1.53e-17 84.3
MsG0880043378.01.T01 MTR_6g009350 33.005 203 86 8 82 250 9 195 4.18e-17 79.7
MsG0880043378.01.T01 MTR_4g014370 29.252 294 161 12 1 277 61 324 5.42e-17 82.0
MsG0880043378.01.T01 MTR_1g091043 47.887 71 37 0 357 427 1 71 6.17e-17 75.5
MsG0880043378.01.T01 MTR_6g090250 30.769 247 116 10 73 273 173 410 1.60e-16 81.6
MsG0880043378.01.T01 MTR_2g034700 31.604 212 109 8 82 276 170 362 1.72e-16 80.9
MsG0880043378.01.T01 MTR_5g043605 34.361 227 120 9 60 267 104 320 1.74e-16 80.9
MsG0880043378.01.T01 MTR_8g036970 35.294 153 79 5 130 277 176 313 1.93e-16 80.9
MsG0880043378.01.T01 MTR_5g097540 28.028 289 174 11 1 278 3 268 2.08e-16 79.7
MsG0880043378.01.T01 MTR_5g096920 34.228 149 84 4 132 275 1 140 3.93e-16 75.9
MsG0880043378.01.T01 MTR_8g063350 30.131 229 122 10 82 289 131 342 4.75e-16 79.3
MsG0880043378.01.T01 MTR_5g024260 32.422 256 125 14 60 277 156 401 9.70e-16 79.0
MsG0880043378.01.T01 MTR_5g068490 33.182 220 120 9 60 267 54 258 1.64e-15 77.0
MsG0880043378.01.T01 MTR_7g019250 30.942 223 117 9 64 264 206 413 2.13e-15 78.2
MsG0880043378.01.T01 MTR_8g063330 25.061 407 230 14 1 340 53 451 2.58e-15 78.2
MsG0880043378.01.T01 MTR_1g050312 30.797 276 131 13 34 266 16 274 3.95e-15 75.9
MsG0880043378.01.T01 MTR_4g028680 37.162 148 70 6 130 265 242 378 7.66e-15 76.3
MsG0880043378.01.T01 MTR_5g036250 56.522 69 29 1 200 267 24 92 9.31e-15 72.8
MsG0880043378.01.T01 MTR_8g039500 26.667 300 145 10 18 256 61 346 1.17e-14 75.1
MsG0880043378.01.T01 MTR_5g097660 47.619 84 42 2 183 264 14 97 2.77e-14 69.7
MsG0880043378.01.T01 MTR_2g104280 26.361 349 158 15 2 265 50 384 5.03e-14 73.9
MsG0880043378.01.T01 MTR_8g013000 27.476 313 149 13 1 244 49 352 8.09e-14 73.2
MsG0880043378.01.T01 MTR_7g016930 28.159 277 114 10 1 219 55 304 9.76e-14 72.4
MsG0880043378.01.T01 MTR_2g090260 43.243 74 42 0 267 340 73 146 1.24e-13 70.5
MsG0880043378.01.T01 MTR_8g063310 28.959 221 124 7 82 273 167 383 2.58e-13 71.6
MsG0880043378.01.T01 MTR_5g096050 34.483 116 53 2 108 223 9 101 5.69e-13 65.9
MsG0880043378.01.T01 MTR_7g023800 34.228 149 83 5 132 273 157 297 8.58e-13 69.3
MsG0880043378.01.T01 MTR_5g086780 28.226 248 114 9 20 262 39 227 1.18e-12 67.8
MsG0880043378.01.T01 MTR_1g007430 27.458 295 139 11 1 235 35 314 1.96e-12 68.2
MsG0880043378.01.T01 MTR_6g023250 47.541 61 28 1 354 414 42 98 4.41e-12 62.8
MsG0880043378.01.T01 MTR_2g022020 39.080 87 52 1 180 265 14 100 9.55e-12 62.0
MsG0880043378.01.T01 MTR_8g090195 55.738 61 26 1 202 261 53 113 1.00e-11 62.0
MsG0880043378.01.T01 MTR_8g090195 52.459 61 21 2 59 117 14 68 2.58e-11 60.8
MsG0880043378.01.T01 MTR_8g479410 41.333 75 42 1 352 426 10 82 4.28e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 100 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAGACTTTGAAGGTAAT+TGG 0.114472 8:+23886338 MsG0880043378.01.T01:CDS
TCCTGCTACCACAGAATTTA+AGG 0.143924 8:+23886201 MsG0880043378.01.T01:intron
ATTCCATCTCTTCTTCTATT+TGG 0.160573 8:+23887747 MsG0880043378.01.T01:CDS
CCTTGCAGAATGCATCCTTT+TGG 0.248736 8:+23886823 MsG0880043378.01.T01:CDS
CCTTGATCTCCTCGATCCTT+TGG 0.267650 8:-23886915 None:intergenic
GCAGCTATTATTACCATTAG+AGG 0.281266 8:-23887629 None:intergenic
CTGCTCTCCTTCACCTTTGT+TGG 0.283537 8:+23887648 MsG0880043378.01.T01:CDS
AAGTTTGAAATTCTCATATA+AGG 0.288277 8:-23888913 None:intergenic
AAAACTTGAATCATCAATAT+TGG 0.317015 8:-23886731 None:intergenic
CACAAATAGCTATCCTTATC+AGG 0.335758 8:-23886370 None:intergenic
GAAGAGATGGAATAAGAAAC+AGG 0.348315 8:-23887737 None:intergenic
ATCGAGGAGATCAAGGTTAA+AGG 0.372133 8:+23886922 MsG0880043378.01.T01:CDS
AAGATACCTCCTCTGGCATT+TGG 0.376753 8:+23886265 MsG0880043378.01.T01:CDS
CACGCAAAGGCCAAGGAAAC+AGG 0.377875 8:-23888699 None:intergenic
ATAATTCAAATTTACAACTA+AGG 0.383656 8:-23888743 None:intergenic
CCTAGACTTTGAAGGTAATT+GGG 0.383859 8:+23886339 MsG0880043378.01.T01:CDS
TAATTGGCAACATAGCTATC+TGG 0.384119 8:+23886513 MsG0880043378.01.T01:intron
CTTGATCTCCTCGATCCTTT+GGG 0.390004 8:-23886914 None:intergenic
TTCACTATCCTCGTTGTGTT+CGG 0.394380 8:-23885958 None:intergenic
TTCCCTGCACCTTCTATAAG+AGG 0.395382 8:-23886629 None:intergenic
AAATCACATTCCTGTTTCCT+TGG 0.395792 8:+23888689 MsG0880043378.01.T01:CDS
GTTGTGTTCGGATATGAAAT+TGG 0.414655 8:-23885946 None:intergenic
CTCTTTATTCCTACCCCAAA+AGG 0.415491 8:-23886838 None:intergenic
TTTGCCGGTTACCTAGATTC+AGG 0.416826 8:+23886662 MsG0880043378.01.T01:CDS
TGCTAACTAGTGATGATCAA+TGG 0.421574 8:+23887675 MsG0880043378.01.T01:CDS
CTGGTGAGAAGTTGGAGGAT+GGG 0.433719 8:+23886048 MsG0880043378.01.T01:CDS
ATCTCTTCTTCTATTTGGCA+TGG 0.436440 8:+23887752 MsG0880043378.01.T01:CDS
CCAATTACCTTCAAAGTCTA+GGG 0.443734 8:-23886338 None:intergenic
TTATTACCCCTAGACTTTGA+AGG 0.444838 8:+23886331 MsG0880043378.01.T01:CDS
TGGTGAGAAGTTGGAGGATG+GGG 0.453715 8:+23886049 MsG0880043378.01.T01:CDS
CTTGGCCTTTGCGTGTCAGA+TGG 0.459217 8:+23888707 MsG0880043378.01.T01:CDS
CCAGCCTGAATCTAGGTAAC+CGG 0.459469 8:-23886666 None:intergenic
AGGTACTTAGCAGGGATACA+TGG 0.459484 8:+23886691 MsG0880043378.01.T01:CDS
CAACCTTACCCTCTTATAGA+AGG 0.461138 8:+23886620 MsG0880043378.01.T01:CDS
TGCTGTTAGAAATCCTCTAA+TGG 0.462759 8:+23887616 MsG0880043378.01.T01:CDS
TCTGGTGAGAAGTTGGAGGA+TGG 0.462780 8:+23886047 MsG0880043378.01.T01:CDS
TTGTCATACGGTTGAAAGCT+AGG 0.467899 8:-23886232 None:intergenic
TTGGGTTGAAGTACCTGATA+AGG 0.468784 8:+23886357 MsG0880043378.01.T01:CDS
GACATGACTATAAATTGATC+CGG 0.470072 8:+23886302 MsG0880043378.01.T01:CDS
TTATAGAAGGTGCAGGGAAA+GGG 0.472198 8:+23886633 MsG0880043378.01.T01:CDS
GTGCATAAGGTGTAGGGAAA+GGG 0.483666 8:-23886020 None:intergenic
CCCAATTACCTTCAAAGTCT+AGG 0.485934 8:-23886339 None:intergenic
CCGGTTACCTAGATTCAGGC+TGG 0.487574 8:+23886666 MsG0880043378.01.T01:CDS
CTCACCAGAAAATGTGCATA+AGG 0.490855 8:-23886033 None:intergenic
TGAGTTTAAGATACCTCCTC+TGG 0.495295 8:+23886258 MsG0880043378.01.T01:CDS
GCTAACTAGTGATGATCAAT+GGG 0.496172 8:+23887676 MsG0880043378.01.T01:CDS
CACCATTGTGAGTGTAAACT+AGG 0.499900 8:-23888835 None:intergenic
CTGATAAGGATAGCTATTTG+TGG 0.503172 8:+23886371 MsG0880043378.01.T01:CDS
CTTATAGAAGGTGCAGGGAA+AGG 0.504096 8:+23886632 MsG0880043378.01.T01:CDS
GGATAGCTATTTGTGGGATG+AGG 0.504174 8:+23886378 MsG0880043378.01.T01:CDS
CCAAAGGATCGAGGAGATCA+AGG 0.505875 8:+23886915 MsG0880043378.01.T01:CDS
TACCTCTCCAGCCTGAATCT+AGG 0.510167 8:-23886673 None:intergenic
TCCGTTTCACGAAGATGACT+TGG 0.511027 8:+23886091 MsG0880043378.01.T01:CDS
TACCCTCTTATAGAAGGTGC+AGG 0.516218 8:+23886626 MsG0880043378.01.T01:CDS
TTGTTGCAGAGAGATGAGAT+AGG 0.520698 8:+23888886 MsG0880043378.01.T01:CDS
TGATAAGGATAGCTATTTGT+GGG 0.522502 8:+23886372 MsG0880043378.01.T01:CDS
GCGGATGCTTTAGCTAAGAA+TGG 0.525909 8:+23888802 MsG0880043378.01.T01:CDS
AGGCTGGAGAGGTACTTAGC+AGG 0.531015 8:+23886682 MsG0880043378.01.T01:CDS
TTTATCATATTCATAGGGAA+GGG 0.532968 8:+23888770 MsG0880043378.01.T01:CDS
CCCAAGTCATCTTCGTGAAA+CGG 0.533780 8:-23886092 None:intergenic
GCACCTTCTATAAGAGGGTA+AGG 0.535418 8:-23886623 None:intergenic
TCATCTTCGTGAAACGGACG+TGG 0.537184 8:-23886086 None:intergenic
AGAAAATGTGCATAAGGTGT+AGG 0.539188 8:-23886027 None:intergenic
TTAAACTCAATGTTGTCATA+CGG 0.540658 8:-23886244 None:intergenic
TCTATAAGAGGGTAAGGTTG+TGG 0.542185 8:-23886617 None:intergenic
ATCTCATCTCTCTGCAACAA+AGG 0.546446 8:-23888883 None:intergenic
TGTGCATAAGGTGTAGGGAA+AGG 0.550054 8:-23886021 None:intergenic
ATGCCAAATAGAAGAAGAGA+TGG 0.550125 8:-23887750 None:intergenic
GAAAATGTGCATAAGGTGTA+GGG 0.551003 8:-23886026 None:intergenic
GCAATTTCCAACAAAGGTGA+AGG 0.552796 8:-23887655 None:intergenic
GGCTGGAGAGGTACTTAGCA+GGG 0.553603 8:+23886683 MsG0880043378.01.T01:CDS
AAGATGATGAGGAAATAGCT+TGG 0.566056 8:+23886878 MsG0880043378.01.T01:CDS
ATTCTTCATAAAAGATGATG+AGG 0.566259 8:+23886867 MsG0880043378.01.T01:CDS
AATGACACAATCTCATCAGA+TGG 0.566448 8:-23886568 None:intergenic
CATCTGACACGCAAAGGCCA+AGG 0.569861 8:-23888706 None:intergenic
AAACACACATCTCATCCTAA+AGG 0.570536 8:+23885980 MsG0880043378.01.T01:CDS
TTCTTCCATCTGACACGCAA+AGG 0.574444 8:-23888712 None:intergenic
CTAGTTTACACTCACAATGG+TGG 0.580904 8:+23888836 MsG0880043378.01.T01:CDS
CTAGGGGTAATAACGCAATC+CGG 0.580988 8:-23886321 None:intergenic
TCCCTGCACCTTCTATAAGA+GGG 0.582847 8:-23886628 None:intergenic
TAGTTTACACTCACAATGGT+GGG 0.605561 8:+23888837 MsG0880043378.01.T01:CDS
AACTCGGTGTTAAAGAATCG+TGG 0.610378 8:+23886776 MsG0880043378.01.T01:CDS
CCGTTTCACGAAGATGACTT+GGG 0.611985 8:+23886092 MsG0880043378.01.T01:CDS
TACCTAGATTCAGGCTGGAG+AGG 0.613993 8:+23886671 MsG0880043378.01.T01:CDS
GGTACTTAGCAGGGATACAT+GGG 0.620018 8:+23886692 MsG0880043378.01.T01:CDS
TAGTTAGCAATTTCCAACAA+AGG 0.623883 8:-23887661 None:intergenic
CATCAGATGGACCTAACCAA+TGG 0.640150 8:-23886555 None:intergenic
ACCCTCTTATAGAAGGTGCA+GGG 0.642003 8:+23886627 MsG0880043378.01.T01:CDS
CCAAAAGGATGCATTCTGCA+AGG 0.644974 8:-23886823 None:intergenic
TGCCTAGTTTACACTCACAA+TGG 0.658472 8:+23888833 MsG0880043378.01.T01:CDS
GGTATGATTTAAGCACCCAA+AGG 0.662233 8:+23886899 MsG0880043378.01.T01:CDS
TGCAAATCAAGAAAGGAGGG+AGG 0.673664 8:+23887590 MsG0880043378.01.T01:CDS
TCATAACCAAATGCCAGAGG+AGG 0.677597 8:-23886271 None:intergenic
TTTAAGCACCCAAAGGATCG+AGG 0.679897 8:+23886906 MsG0880043378.01.T01:CDS
TAGGGAAGGGAATTCTGTAG+CGG 0.685227 8:+23888783 MsG0880043378.01.T01:CDS
CAATTACCTTCAAAGTCTAG+GGG 0.685323 8:-23886337 None:intergenic
CGATCATAACCAAATGCCAG+AGG 0.703313 8:-23886274 None:intergenic
TTTCATATCCGAACACAACG+AGG 0.743440 8:+23885950 MsG0880043378.01.T01:CDS
GTTCGGATATGAAATTGGTG+CGG 0.753288 8:-23885941 None:intergenic
TCATACGGTTGAAAGCTAGG+CGG 0.813880 8:-23886229 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTATAAAATTATTGC+TGG - Chr8:23887054-23887073 None:intergenic 10.0%
!! TTATTTATAAAATTATTGCT+GGG - Chr8:23887053-23887072 None:intergenic 10.0%
!!! ATAATTTTTATCATATTCAT+AGG + Chr8:23888764-23888783 MsG0880043378.01.T01:CDS 10.0%
!!! TAAGAATAATTTTTTTTTTG+TGG + Chr8:23887169-23887188 MsG0880043378.01.T01:intron 10.0%
!!! TAATTTTTATCATATTCATA+GGG + Chr8:23888765-23888784 MsG0880043378.01.T01:CDS 10.0%
!! AATATTTACATATTCTACAA+TGG - Chr8:23887875-23887894 None:intergenic 15.0%
!! ATAATTCAAATTTACAACTA+AGG - Chr8:23888746-23888765 None:intergenic 15.0%
!! ATATTTACATATTCTACAAT+GGG - Chr8:23887874-23887893 None:intergenic 15.0%
!! CGAATTAATATTTAATGTAT+TGG + Chr8:23887003-23887022 MsG0880043378.01.T01:intron 15.0%
!! AAAACTTGAATCATCAATAT+TGG - Chr8:23886734-23886753 None:intergenic 20.0%
!! AGAATATGTAAATATTCCTA+GGG + Chr8:23887879-23887898 MsG0880043378.01.T01:intron 20.0%
!! CAATTCAAAAACAAACTTAA+TGG + Chr8:23887337-23887356 MsG0880043378.01.T01:intron 20.0%
!! TAGAATATGTAAATATTCCT+AGG + Chr8:23887878-23887897 MsG0880043378.01.T01:intron 20.0%
!!! AAGTTTGAAATTCTCATATA+AGG - Chr8:23888916-23888935 None:intergenic 20.0%
!!! AATTATTTTAAGAGCTAGTA+AGG + Chr8:23887360-23887379 MsG0880043378.01.T01:intron 20.0%
!!! AATTGTCTTATGATTTTTTC+AGG + Chr8:23888087-23888106 MsG0880043378.01.T01:intron 20.0%
!!! ATTCAAGTTTTTATGACATA+TGG + Chr8:23886743-23886762 MsG0880043378.01.T01:CDS 20.0%
!!! ATTGTCTTATGATTTTTTCA+GGG + Chr8:23888088-23888107 MsG0880043378.01.T01:intron 20.0%
!!! GAATAATTTTTTTTTTGTGG+TGG + Chr8:23887172-23887191 MsG0880043378.01.T01:intron 20.0%
!!! TTTTATGACATATGGATTTT+GGG + Chr8:23886751-23886770 MsG0880043378.01.T01:CDS 20.0%
!!! TTTTTATGACATATGGATTT+TGG + Chr8:23886750-23886769 MsG0880043378.01.T01:CDS 20.0%
! AACAAAGGTAAGATAAAAAG+AGG - Chr8:23888871-23888890 None:intergenic 25.0%
! ACATTAGAACAATATGTACA+TGG - Chr8:23888505-23888524 None:intergenic 25.0%
! ATATATTCTTTAATCGTCCT+CGG - Chr8:23887259-23887278 None:intergenic 25.0%
! ATTCTTCATAAAAGATGATG+AGG + Chr8:23886867-23886886 MsG0880043378.01.T01:CDS 25.0%
! CATTAGAACAATATGTACAT+GGG - Chr8:23888504-23888523 None:intergenic 25.0%
! CCAAATATATATTATCGAAG+GGG + Chr8:23887137-23887156 MsG0880043378.01.T01:intron 25.0%
! CTGTTCTGTAATTACTAAAA+TGG + Chr8:23888304-23888323 MsG0880043378.01.T01:intron 25.0%
! GCCAAATATATATTATCGAA+GGG + Chr8:23887136-23887155 MsG0880043378.01.T01:intron 25.0%
! TAATTCGTTCAAAAGAATGA+AGG - Chr8:23886990-23887009 None:intergenic 25.0%
! TGCCAAATATATATTATCGA+AGG + Chr8:23887135-23887154 MsG0880043378.01.T01:intron 25.0%
! TGTAATTACTAAAATGGCAA+TGG + Chr8:23888310-23888329 MsG0880043378.01.T01:intron 25.0%
! TTAAACTCAATGTTGTCATA+CGG - Chr8:23886247-23886266 None:intergenic 25.0%
! TTCGATAATATATATTTGGC+AGG - Chr8:23887136-23887155 None:intergenic 25.0%
! TTTATCATATTCATAGGGAA+GGG + Chr8:23888770-23888789 MsG0880043378.01.T01:CDS 25.0%
!! ATTATTTAGTGTTGAAGTGA+TGG + Chr8:23887418-23887437 MsG0880043378.01.T01:intron 25.0%
!! TATGTTTTGCAAATCAAGAA+AGG + Chr8:23887583-23887602 MsG0880043378.01.T01:CDS 25.0%
!! TCTAATTGATAATATGAAGC+TGG + Chr8:23887307-23887326 MsG0880043378.01.T01:intron 25.0%
!! TTTTATCATATTCATAGGGA+AGG + Chr8:23888769-23888788 MsG0880043378.01.T01:CDS 25.0%
!!! CATTTTAGTAATTACAGAAC+AGG - Chr8:23888306-23888325 None:intergenic 25.0%
!!! TTGTCTTATGATTTTTTCAG+GGG + Chr8:23888089-23888108 MsG0880043378.01.T01:intron 25.0%
!!! TTTTGAGAAACCAAGTATTT+AGG - Chr8:23887967-23887986 None:intergenic 25.0%
AAAGGTAAGATAAAAAGAGG+TGG - Chr8:23888868-23888887 None:intergenic 30.0%
AATTACTCAACTTGGACTAT+TGG + Chr8:23887802-23887821 MsG0880043378.01.T01:intron 30.0%
AGAAACCAAGTATTTAGGAA+GGG - Chr8:23887962-23887981 None:intergenic 30.0%
AGTTAGTCAACCACTTTATT+TGG + Chr8:23887518-23887537 MsG0880043378.01.T01:intron 30.0%
ATATGTAAATATTCCTAGGG+AGG + Chr8:23887882-23887901 MsG0880043378.01.T01:intron 30.0%
ATTCCATCTCTTCTTCTATT+TGG + Chr8:23887747-23887766 MsG0880043378.01.T01:CDS 30.0%
CATGACACAAAAATTGTTTG+TGG + Chr8:23886176-23886195 MsG0880043378.01.T01:intron 30.0%
CCCCTTCGATAATATATATT+TGG - Chr8:23887140-23887159 None:intergenic 30.0%
CTTAGTGCAACATTAATGAA+TGG + Chr8:23888545-23888564 MsG0880043378.01.T01:intron 30.0%
CTTAGTGCAACATTAATGAA+TGG - Chr8:23888564-23888545 None:intergenic 30.0%
GACATGACTATAAATTGATC+CGG + Chr8:23886302-23886321 MsG0880043378.01.T01:CDS 30.0%
GATATAAGCTAAAACAGTCA+TGG - Chr8:23887923-23887942 None:intergenic 30.0%
TACAATGCATAACATATGCA+AGG - Chr8:23887217-23887236 None:intergenic 30.0%
TAGTTAGCAATTTCCAACAA+AGG - Chr8:23887664-23887683 None:intergenic 30.0%
TATAGCCTCAAAAGTAACTT+TGG + Chr8:23886461-23886480 MsG0880043378.01.T01:intron 30.0%
TATATTCTTTAATCGTCCTC+GGG - Chr8:23887258-23887277 None:intergenic 30.0%
TATTGTTCTAATGTCATGCA+TGG + Chr8:23888511-23888530 MsG0880043378.01.T01:intron 30.0%
TGATAAGGATAGCTATTTGT+GGG + Chr8:23886372-23886391 MsG0880043378.01.T01:CDS 30.0%
! AAAGTAACTTTGGAGGAAAA+TGG + Chr8:23886471-23886490 MsG0880043378.01.T01:intron 30.0%
! ACTTGAATGAATTTTGCCAT+TGG + Chr8:23886539-23886558 MsG0880043378.01.T01:CDS 30.0%
! CACAAACAATTTTTGTGTCA+TGG - Chr8:23886178-23886197 None:intergenic 30.0%
! CCAAGTTGAGTAATTTCTAA+CGG - Chr8:23887797-23887816 None:intergenic 30.0%
! TCATTTGTGTCTTTTCCTTT+AGG - Chr8:23885998-23886017 None:intergenic 30.0%
! TTTTGCAAATCAAGAAAGGA+GGG + Chr8:23887587-23887606 MsG0880043378.01.T01:CDS 30.0%
!! AATGAATTTTGCCATTGGTT+AGG + Chr8:23886544-23886563 MsG0880043378.01.T01:CDS 30.0%
!!! AATTTTTTTTTTGTGGTGGC+CGG + Chr8:23887176-23887195 MsG0880043378.01.T01:intron 30.0%
!!! CTCTTCTTCTATTTTTGACA+AGG + Chr8:23888574-23888593 MsG0880043378.01.T01:intron 30.0%
!!! CTCTTCTTCTATTTTTGACA+AGG - Chr8:23888593-23888574 None:intergenic 30.0%
!!! CTGTTTTTGTAAGTCAAAGA+CGG + Chr8:23888256-23888275 MsG0880043378.01.T01:intron 30.0%
!!! GTACTAGAGCTTTTGTTTTA+TGG + Chr8:23888164-23888183 MsG0880043378.01.T01:intron 30.0%
!!! GTTTTAGCTTATATCTCTGA+TGG + Chr8:23887928-23887947 MsG0880043378.01.T01:intron 30.0%
!!! TGTCTTATGATTTTTTCAGG+GGG + Chr8:23888090-23888109 MsG0880043378.01.T01:intron 30.0%
!!! TTCTATTTTTGACAAGGCTT+GGG - Chr8:23888624-23888643 None:intergenic 30.0%
AAACACACATCTCATCCTAA+AGG + Chr8:23885980-23885999 MsG0880043378.01.T01:CDS 35.0%
AAATCACATTCCTGTTTCCT+TGG + Chr8:23888689-23888708 MsG0880043378.01.T01:CDS 35.0%
AAGATGATGAGGAAATAGCT+TGG + Chr8:23886878-23886897 MsG0880043378.01.T01:CDS 35.0%
AATGACACAATCTCATCAGA+TGG - Chr8:23886571-23886590 None:intergenic 35.0%
ACAGGAAAAAACTAAGTGTG+AGG - Chr8:23888288-23888307 None:intergenic 35.0%
AGAAAATGTGCATAAGGTGT+AGG - Chr8:23886030-23886049 None:intergenic 35.0%
ATCTCTTCTTCTATTTGGCA+TGG + Chr8:23887752-23887771 MsG0880043378.01.T01:CDS 35.0%
ATGCCAAATAGAAGAAGAGA+TGG - Chr8:23887753-23887772 None:intergenic 35.0%
CAAATCTGCCAAATAATGAG+AGG - Chr8:23888442-23888461 None:intergenic 35.0%
CAATTACCTTCAAAGTCTAG+GGG - Chr8:23886340-23886359 None:intergenic 35.0%
CACAAATAGCTATCCTTATC+AGG - Chr8:23886373-23886392 None:intergenic 35.0%
CATAACATATGCAAGGTTTG+GGG - Chr8:23887210-23887229 None:intergenic 35.0%
CATATCCACTCCAAATAAAG+TGG - Chr8:23887531-23887550 None:intergenic 35.0%
CCAATTACCTTCAAAGTCTA+GGG - Chr8:23886341-23886360 None:intergenic 35.0%
CCGTTAGAAATTACTCAACT+TGG + Chr8:23887794-23887813 MsG0880043378.01.T01:intron 35.0%
CTCTCATTATTTGGCAGATT+TGG + Chr8:23888440-23888459 MsG0880043378.01.T01:intron 35.0%
CTGATAAGGATAGCTATTTG+TGG + Chr8:23886371-23886390 MsG0880043378.01.T01:CDS 35.0%
GAAAATGTGCATAAGGTGTA+GGG - Chr8:23886029-23886048 None:intergenic 35.0%
GAAGAGATGGAATAAGAAAC+AGG - Chr8:23887740-23887759 None:intergenic 35.0%
GAGAAACCAAGTATTTAGGA+AGG - Chr8:23887963-23887982 None:intergenic 35.0%
GCAGCTATTATTACCATTAG+AGG - Chr8:23887632-23887651 None:intergenic 35.0%
GCATAACATATGCAAGGTTT+GGG - Chr8:23887211-23887230 None:intergenic 35.0%
GCTAACTAGTGATGATCAAT+GGG + Chr8:23887676-23887695 MsG0880043378.01.T01:CDS 35.0%
GTTGTGTTCGGATATGAAAT+TGG - Chr8:23885949-23885968 None:intergenic 35.0%
TAATTGGCAACATAGCTATC+TGG + Chr8:23886513-23886532 MsG0880043378.01.T01:intron 35.0%
TACTTGGTTTCTCAAAATGC+TGG + Chr8:23887970-23887989 MsG0880043378.01.T01:intron 35.0%
TAGTTTACACTCACAATGGT+GGG + Chr8:23888837-23888856 MsG0880043378.01.T01:CDS 35.0%
TCATTATTTGGCAGATTTGG+TGG + Chr8:23888443-23888462 MsG0880043378.01.T01:intron 35.0%
TGCATAACATATGCAAGGTT+TGG - Chr8:23887212-23887231 None:intergenic 35.0%
TGCTAACTAGTGATGATCAA+TGG + Chr8:23887675-23887694 MsG0880043378.01.T01:CDS 35.0%
TGCTGTTAGAAATCCTCTAA+TGG + Chr8:23887616-23887635 MsG0880043378.01.T01:CDS 35.0%
TTACGCAAGTTATCATCTGT+AGG - Chr8:23888210-23888229 None:intergenic 35.0%
TTATTACCCCTAGACTTTGA+AGG + Chr8:23886331-23886350 MsG0880043378.01.T01:CDS 35.0%
TTATTAGTCAGAATACCCTC+AGG - Chr8:23888069-23888088 None:intergenic 35.0%
TTCTGTGACCTCTCATTATT+TGG + Chr8:23888431-23888450 MsG0880043378.01.T01:intron 35.0%
! AAAACAAAAGCTCTAGTACG+TGG - Chr8:23888163-23888182 None:intergenic 35.0%
! AAACAAAAGCTCTAGTACGT+GGG - Chr8:23888162-23888181 None:intergenic 35.0%
! CATTATTTGGCAGATTTGGT+GGG + Chr8:23888444-23888463 MsG0880043378.01.T01:intron 35.0%
! CCTAGACTTTGAAGGTAATT+GGG + Chr8:23886339-23886358 MsG0880043378.01.T01:CDS 35.0%
! GGAAACAGGAATGTGATTTT+TGG - Chr8:23888688-23888707 None:intergenic 35.0%
! GTTTTGCAAATCAAGAAAGG+AGG + Chr8:23887586-23887605 MsG0880043378.01.T01:CDS 35.0%
! TAACTTTGGAGGAAAATGGT+TGG + Chr8:23886475-23886494 MsG0880043378.01.T01:intron 35.0%
! TACACCTTATGCACATTTTC+TGG + Chr8:23886029-23886048 MsG0880043378.01.T01:CDS 35.0%
! TTCTCATTCGTTGATTGCAT+AGG + Chr8:23887110-23887129 MsG0880043378.01.T01:intron 35.0%
!! ATATGGATTTTGGGTGAACT+CGG + Chr8:23886760-23886779 MsG0880043378.01.T01:CDS 35.0%
!! ATTATTTGGCAGATTTGGTG+GGG + Chr8:23888445-23888464 MsG0880043378.01.T01:intron 35.0%
!! GCATTGACATGCGTTTTAAT+TGG + Chr8:23886497-23886516 MsG0880043378.01.T01:intron 35.0%
!!! ATTTTTTTTTTGTGGTGGCC+GGG + Chr8:23887177-23887196 MsG0880043378.01.T01:intron 35.0%
!!! CTAGAGCTTTTGTTTTATGG+AGG + Chr8:23888167-23888186 MsG0880043378.01.T01:intron 35.0%
!!! CTTCTATTTTTGACAAGGCT+TGG - Chr8:23888625-23888644 None:intergenic 35.0%
!!! GACTTGGGTATTGAGATTTT+GGG + Chr8:23886107-23886126 MsG0880043378.01.T01:intron 35.0%
!!! TGACTTGGGTATTGAGATTT+TGG + Chr8:23886106-23886125 MsG0880043378.01.T01:intron 35.0%
!!! TTCCTCCAAAGTTACTTTTG+AGG - Chr8:23886469-23886488 None:intergenic 35.0%
AAAATGGCAATGGCTTCAAG+AGG + Chr8:23888320-23888339 MsG0880043378.01.T01:intron 40.0%
AAGCTAAAACAGTCATGGTG+AGG - Chr8:23887918-23887937 None:intergenic 40.0%
ACCTTAAATTCTGTGGTAGC+AGG - Chr8:23886205-23886224 None:intergenic 40.0%
AGAAACCGCAGGTATTTCAA+CGG + Chr8:23888468-23888487 MsG0880043378.01.T01:intron 40.0%
AGCCTCAAAAGTAACTTTGG+AGG + Chr8:23886464-23886483 MsG0880043378.01.T01:intron 40.0%
AGCTAAAACAGTCATGGTGA+GGG - Chr8:23887917-23887936 None:intergenic 40.0%
AGGATTATGATCACACTGTG+TGG + Chr8:23886398-23886417 MsG0880043378.01.T01:intron 40.0%
ATCGAGGAGATCAAGGTTAA+AGG + Chr8:23886922-23886941 MsG0880043378.01.T01:CDS 40.0%
ATCTCATCTCTCTGCAACAA+AGG - Chr8:23888886-23888905 None:intergenic 40.0%
ATGGCACCAAAATTCTGTTC+TGG + Chr8:23887827-23887846 MsG0880043378.01.T01:intron 40.0%
CAACCTTACCCTCTTATAGA+AGG + Chr8:23886620-23886639 MsG0880043378.01.T01:CDS 40.0%
CACCATTGTGAGTGTAAACT+AGG - Chr8:23888838-23888857 None:intergenic 40.0%
CCATTTGTGAGATCTAAGTG+AGG - Chr8:23888351-23888370 None:intergenic 40.0%
CCCAATTACCTTCAAAGTCT+AGG - Chr8:23886342-23886361 None:intergenic 40.0%
CCTCACTTAGATCTCACAAA+TGG + Chr8:23888348-23888367 MsG0880043378.01.T01:intron 40.0%
CGGAACAACCTTAAATTCTG+TGG - Chr8:23886212-23886231 None:intergenic 40.0%
CTAGTTTACACTCACAATGG+TGG + Chr8:23888836-23888855 MsG0880043378.01.T01:CDS 40.0%
CTCACCAGAAAATGTGCATA+AGG - Chr8:23886036-23886055 None:intergenic 40.0%
CTCTTTATTCCTACCCCAAA+AGG - Chr8:23886841-23886860 None:intergenic 40.0%
CTTATATCTCTGATGGCAAC+TGG + Chr8:23887935-23887954 MsG0880043378.01.T01:intron 40.0%
GACTCGCAAAAAAATCTGCA+CGG + Chr8:23887550-23887569 MsG0880043378.01.T01:CDS 40.0%
GCAATTTCCAACAAAGGTGA+AGG - Chr8:23887658-23887677 None:intergenic 40.0%
GGAAAAAACTAAGTGTGAGG+AGG - Chr8:23888285-23888304 None:intergenic 40.0%
GGATTATGATCACACTGTGT+GGG + Chr8:23886399-23886418 MsG0880043378.01.T01:intron 40.0%
GGTATGATTTAAGCACCCAA+AGG + Chr8:23886899-23886918 MsG0880043378.01.T01:CDS 40.0%
GTGAGAGAACTTATTTCCCT+GGG - Chr8:23888400-23888419 None:intergenic 40.0%
GTTCGGATATGAAATTGGTG+CGG - Chr8:23885944-23885963 None:intergenic 40.0%
TCAACTTGGACTATTGGTGA+TGG + Chr8:23887808-23887827 MsG0880043378.01.T01:intron 40.0%
TCCTGCTACCACAGAATTTA+AGG + Chr8:23886201-23886220 MsG0880043378.01.T01:intron 40.0%
TCTATAAGAGGGTAAGGTTG+TGG - Chr8:23886620-23886639 None:intergenic 40.0%
TGCCTAGTTTACACTCACAA+TGG + Chr8:23888833-23888852 MsG0880043378.01.T01:CDS 40.0%
TTCACTATCCTCGTTGTGTT+CGG - Chr8:23885961-23885980 None:intergenic 40.0%
TTGTCATACGGTTGAAAGCT+AGG - Chr8:23886235-23886254 None:intergenic 40.0%
TTGTGTCATGGTAAATGCCT+TGG - Chr8:23886166-23886185 None:intergenic 40.0%
TTGTTGCAGAGAGATGAGAT+AGG + Chr8:23888886-23888905 MsG0880043378.01.T01:CDS 40.0%
TTTCATATCCGAACACAACG+AGG + Chr8:23885950-23885969 MsG0880043378.01.T01:CDS 40.0%
! ATCCGTCCAGAACAGAATTT+TGG - Chr8:23887836-23887855 None:intergenic 40.0%
! CACCAAAATTCTGTTCTGGA+CGG + Chr8:23887831-23887850 MsG0880043378.01.T01:intron 40.0%
! CCCTAGACTTTGAAGGTAAT+TGG + Chr8:23886338-23886357 MsG0880043378.01.T01:CDS 40.0%
! CTTGCAGAATGCATCCTTTT+GGG + Chr8:23886824-23886843 MsG0880043378.01.T01:CDS 40.0%
! GATGATAACTTGCGTAAACG+TGG + Chr8:23888213-23888232 MsG0880043378.01.T01:intron 40.0%
! GTCAACCACTTTATTTGGAG+TGG + Chr8:23887523-23887542 MsG0880043378.01.T01:intron 40.0%
! GTGCCGTACTAGATTTTTGA+GGG + Chr8:23887706-23887725 MsG0880043378.01.T01:CDS 40.0%
! TGAGTTTAAGATACCTCCTC+TGG + Chr8:23886258-23886277 MsG0880043378.01.T01:CDS 40.0%
! TGTGCCGTACTAGATTTTTG+AGG + Chr8:23887705-23887724 MsG0880043378.01.T01:CDS 40.0%
! TTATAGAAGGTGCAGGGAAA+GGG + Chr8:23886633-23886652 MsG0880043378.01.T01:CDS 40.0%
! TTGCAGAATGCATCCTTTTG+GGG + Chr8:23886825-23886844 MsG0880043378.01.T01:CDS 40.0%
! TTGGGTTTTGCTAGTGCTAA+TGG + Chr8:23886125-23886144 MsG0880043378.01.T01:intron 40.0%
!! AACTCGGTGTTAAAGAATCG+TGG + Chr8:23886776-23886795 MsG0880043378.01.T01:CDS 40.0%
!! ACATATTCTACAATGGGCTG+TGG - Chr8:23887868-23887887 None:intergenic 40.0%
!! ATTTTCTGGTGAGAAGTTGG+AGG + Chr8:23886043-23886062 MsG0880043378.01.T01:CDS 40.0%
!! CACATTTTCTGGTGAGAAGT+TGG + Chr8:23886040-23886059 MsG0880043378.01.T01:CDS 40.0%
!! TTGGGTTGAAGTACCTGATA+AGG + Chr8:23886357-23886376 MsG0880043378.01.T01:CDS 40.0%
!!! TATGATTTTTTCAGGGGGCA+GGG + Chr8:23888095-23888114 MsG0880043378.01.T01:intron 40.0%
!!! TTATGATTTTTTCAGGGGGC+AGG + Chr8:23888094-23888113 MsG0880043378.01.T01:intron 40.0%
AAAAAATCTGCACGGTCGCT+TGG + Chr8:23887558-23887577 MsG0880043378.01.T01:CDS 45.0%
AAAAATCTGCACGGTCGCTT+GGG + Chr8:23887559-23887578 MsG0880043378.01.T01:CDS 45.0%
AAATGCCTTGGCAGAGACAA+AGG - Chr8:23886154-23886173 None:intergenic 45.0%
AAGATACCTCCTCTGGCATT+TGG + Chr8:23886265-23886284 MsG0880043378.01.T01:CDS 45.0%
AATGCCTTGGCAGAGACAAA+GGG - Chr8:23886153-23886172 None:intergenic 45.0%
AGGTACTTAGCAGGGATACA+TGG + Chr8:23886691-23886710 MsG0880043378.01.T01:CDS 45.0%
AGGTCACAGAAAGAAGAACC+TGG - Chr8:23888422-23888441 None:intergenic 45.0%
CATCAGATGGACCTAACCAA+TGG - Chr8:23886558-23886577 None:intergenic 45.0%
CCAAAAGGATGCATTCTGCA+AGG - Chr8:23886826-23886845 None:intergenic 45.0%
CCCAAGTCATCTTCGTGAAA+CGG - Chr8:23886095-23886114 None:intergenic 45.0%
CCGCCCTCAAAAATCTAGTA+CGG - Chr8:23887712-23887731 None:intergenic 45.0%
CCGTTTCACGAAGATGACTT+GGG + Chr8:23886092-23886111 MsG0880043378.01.T01:CDS 45.0%
CGAGATGAATGACCCTTTCT+GGG + Chr8:23886435-23886454 MsG0880043378.01.T01:intron 45.0%
CGATCATAACCAAATGCCAG+AGG - Chr8:23886277-23886296 None:intergenic 45.0%
CTAGGGGTAATAACGCAATC+CGG - Chr8:23886324-23886343 None:intergenic 45.0%
CTGGACCCTTCCTAAATACT+TGG + Chr8:23887954-23887973 MsG0880043378.01.T01:intron 45.0%
CTTGATCTCCTCGATCCTTT+GGG - Chr8:23886917-23886936 None:intergenic 45.0%
GAGGCTATATCTCCCAGAAA+GGG - Chr8:23886450-23886469 None:intergenic 45.0%
GCACCTTCTATAAGAGGGTA+AGG - Chr8:23886626-23886645 None:intergenic 45.0%
GCGGATGCTTTAGCTAAGAA+TGG + Chr8:23888802-23888821 MsG0880043378.01.T01:CDS 45.0%
GGATAGCTATTTGTGGGATG+AGG + Chr8:23886378-23886397 MsG0880043378.01.T01:CDS 45.0%
GGGAAATAAGTTCTCTCACC+AGG + Chr8:23888401-23888420 MsG0880043378.01.T01:intron 45.0%
GGTACTTAGCAGGGATACAT+GGG + Chr8:23886692-23886711 MsG0880043378.01.T01:CDS 45.0%
GGTGAGAGAACTTATTTCCC+TGG - Chr8:23888401-23888420 None:intergenic 45.0%
GTGCATAAGGTGTAGGGAAA+GGG - Chr8:23886023-23886042 None:intergenic 45.0%
TAGGGAAGGGAATTCTGTAG+CGG + Chr8:23888783-23888802 MsG0880043378.01.T01:CDS 45.0%
TCATAACCAAATGCCAGAGG+AGG - Chr8:23886274-23886293 None:intergenic 45.0%
TCATACGGTTGAAAGCTAGG+CGG - Chr8:23886232-23886251 None:intergenic 45.0%
TCCCTGCACCTTCTATAAGA+GGG - Chr8:23886631-23886650 None:intergenic 45.0%
TCCGTTTCACGAAGATGACT+TGG + Chr8:23886091-23886110 MsG0880043378.01.T01:CDS 45.0%
TCGAGATGAATGACCCTTTC+TGG + Chr8:23886434-23886453 MsG0880043378.01.T01:intron 45.0%
TGAGGCTATATCTCCCAGAA+AGG - Chr8:23886451-23886470 None:intergenic 45.0%
TGCAAATCAAGAAAGGAGGG+AGG + Chr8:23887590-23887609 MsG0880043378.01.T01:CDS 45.0%
TGTGCATAAGGTGTAGGGAA+AGG - Chr8:23886024-23886043 None:intergenic 45.0%
TTAAAGGTCAGTCAGCTGCT+GGG + Chr8:23886938-23886957 MsG0880043378.01.T01:intron 45.0%
TTCCCTGCACCTTCTATAAG+AGG - Chr8:23886632-23886651 None:intergenic 45.0%
TTCTTCCATCTGACACGCAA+AGG - Chr8:23888715-23888734 None:intergenic 45.0%
TTTAAGCACCCAAAGGATCG+AGG + Chr8:23886906-23886925 MsG0880043378.01.T01:CDS 45.0%
! ACCCTCTTATAGAAGGTGCA+GGG + Chr8:23886627-23886646 MsG0880043378.01.T01:CDS 45.0%
! CCTTGCAGAATGCATCCTTT+TGG + Chr8:23886823-23886842 MsG0880043378.01.T01:CDS 45.0%
! CTTATAGAAGGTGCAGGGAA+AGG + Chr8:23886632-23886651 MsG0880043378.01.T01:CDS 45.0%
! GGGAAAGGGAATCATTTTGC+CGG + Chr8:23886647-23886666 MsG0880043378.01.T01:CDS 45.0%
! TACCCTCTTATAGAAGGTGC+AGG + Chr8:23886626-23886645 MsG0880043378.01.T01:CDS 45.0%
! TTTGCCGGTTACCTAGATTC+AGG + Chr8:23886662-23886681 MsG0880043378.01.T01:CDS 45.0%
!! CCGTACTAGATTTTTGAGGG+CGG + Chr8:23887709-23887728 MsG0880043378.01.T01:CDS 45.0%
!! CGTACTAGATTTTTGAGGGC+GGG + Chr8:23887710-23887729 MsG0880043378.01.T01:CDS 45.0%
!!! AGAATGCATCCTTTTGGGGT+AGG + Chr8:23886829-23886848 MsG0880043378.01.T01:CDS 45.0%
AGTTCAGCTGGTCGATGCAA+GGG - Chr8:23888035-23888054 None:intergenic 50.0%
CCAAAGGATCGAGGAGATCA+AGG + Chr8:23886915-23886934 MsG0880043378.01.T01:CDS 50.0%
CCAGCCTGAATCTAGGTAAC+CGG - Chr8:23886669-23886688 None:intergenic 50.0%
CCATGCCGTTGAAATACCTG+CGG - Chr8:23888476-23888495 None:intergenic 50.0%
CCTTGATCTCCTCGATCCTT+TGG - Chr8:23886918-23886937 None:intergenic 50.0%
CTGCGTAGTTGTGTATCCCA+GGG + Chr8:23888381-23888400 MsG0880043378.01.T01:intron 50.0%
CTGCTCTCCTTCACCTTTGT+TGG + Chr8:23887648-23887667 MsG0880043378.01.T01:CDS 50.0%
CTGGTGAGAAGTTGGAGGAT+GGG + Chr8:23886048-23886067 MsG0880043378.01.T01:CDS 50.0%
GTTAAAGGTCAGTCAGCTGC+TGG + Chr8:23886937-23886956 MsG0880043378.01.T01:intron 50.0%
TACCAACTGAACTAAGCCCG+AGG + Chr8:23887239-23887258 MsG0880043378.01.T01:intron 50.0%
TACCTAGATTCAGGCTGGAG+AGG + Chr8:23886671-23886690 MsG0880043378.01.T01:CDS 50.0%
TACCTCTCCAGCCTGAATCT+AGG - Chr8:23886676-23886695 None:intergenic 50.0%
TCATCTTCGTGAAACGGACG+TGG - Chr8:23886089-23886108 None:intergenic 50.0%
TCTGCGTAGTTGTGTATCCC+AGG + Chr8:23888380-23888399 MsG0880043378.01.T01:intron 50.0%
TCTGGTGAGAAGTTGGAGGA+TGG + Chr8:23886047-23886066 MsG0880043378.01.T01:CDS 50.0%
TGGTCGATGCAAGGGGATAT+AGG - Chr8:23888027-23888046 None:intergenic 50.0%
TGGTGAGAAGTTGGAGGATG+GGG + Chr8:23886049-23886068 MsG0880043378.01.T01:CDS 50.0%
TTCCAAAGCAGCGAACACCA+AGG - Chr8:23888130-23888149 None:intergenic 50.0%
! AAGGTTTGGGGTTCGAATCC+CGG - Chr8:23887198-23887217 None:intergenic 50.0%
! TTCTGTTCTGGACGGATCGT+TGG + Chr8:23887839-23887858 MsG0880043378.01.T01:intron 50.0%
AACTGGACCAGTGCTCCTGA+GGG + Chr8:23888051-23888070 MsG0880043378.01.T01:intron 55.0%
CACGCAAAGGCCAAGGAAAC+AGG - Chr8:23888702-23888721 None:intergenic 55.0%
CAGTTCAGCTGGTCGATGCA+AGG - Chr8:23888036-23888055 None:intergenic 55.0%
CATCTGACACGCAAAGGCCA+AGG - Chr8:23888709-23888728 None:intergenic 55.0%
CCGCAGGTATTTCAACGGCA+TGG + Chr8:23888473-23888492 MsG0880043378.01.T01:intron 55.0%
CCGGTTACCTAGATTCAGGC+TGG + Chr8:23886666-23886685 MsG0880043378.01.T01:CDS 55.0%
GGGCAGGGATTAAGATGCCT+TGG + Chr8:23888110-23888129 MsG0880043378.01.T01:intron 55.0%
GTCCTCGGGCTTAGTTCAGT+TGG - Chr8:23887244-23887263 None:intergenic 55.0%
GTTCAGCTGGTCGATGCAAG+GGG - Chr8:23888034-23888053 None:intergenic 55.0%
! ATTTGGTGGGGAGAAACCGC+AGG + Chr8:23888457-23888476 MsG0880043378.01.T01:intron 55.0%
! CAGAATACCCTCAGGAGCAC+TGG - Chr8:23888061-23888080 None:intergenic 55.0%
! CTTGCATCGACCAGCTGAAC+TGG + Chr8:23888034-23888053 MsG0880043378.01.T01:intron 55.0%
! CTTGGCCTTTGCGTGTCAGA+TGG + Chr8:23888707-23888726 MsG0880043378.01.T01:CDS 55.0%
!! AGGCTGGAGAGGTACTTAGC+AGG + Chr8:23886682-23886701 MsG0880043378.01.T01:CDS 55.0%
!! GGCTGGAGAGGTACTTAGCA+GGG + Chr8:23886683-23886702 MsG0880043378.01.T01:CDS 55.0%
!! TGCCTTGGTGTTCGCTGCTT+TGG + Chr8:23888125-23888144 MsG0880043378.01.T01:intron 55.0%
AGGTCAGTCAGCTGCTGGGT+TGG + Chr8:23886942-23886961 MsG0880043378.01.T01:intron 60.0%
GAACTGGACCAGTGCTCCTG+AGG + Chr8:23888050-23888069 MsG0880043378.01.T01:intron 60.0%
GGCACCCTTTGTCTCTGCCA+AGG + Chr8:23886146-23886165 MsG0880043378.01.T01:intron 60.0%
! AGGGTGTCTCAGACCTCCCT+AGG - Chr8:23887898-23887917 None:intergenic 60.0%
!! GAGCACTGGTCCAGTTCAGC+TGG - Chr8:23888047-23888066 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 23885936 23888939 23885936 ID=MsG0880043378.01;Name=MsG0880043378.01
Chr8 mRNA 23885936 23888939 23885936 ID=MsG0880043378.01.T01;Parent=MsG0880043378.01;Name=MsG0880043378.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|0.25|0.2|5|0|430
Chr8 exon 23885936 23886113 23885936 ID=MsG0880043378.01.T01:exon:8729;Parent=MsG0880043378.01.T01
Chr8 exon 23886215 23886416 23886215 ID=MsG0880043378.01.T01:exon:8730;Parent=MsG0880043378.01.T01
Chr8 exon 23886528 23886943 23886528 ID=MsG0880043378.01.T01:exon:8731;Parent=MsG0880043378.01.T01
Chr8 exon 23887543 23887773 23887543 ID=MsG0880043378.01.T01:exon:8732;Parent=MsG0880043378.01.T01
Chr8 exon 23888674 23888939 23888674 ID=MsG0880043378.01.T01:exon:8733;Parent=MsG0880043378.01.T01
Chr8 CDS 23885936 23886113 23885936 ID=MsG0880043378.01.T01:cds;Parent=MsG0880043378.01.T01
Chr8 CDS 23886215 23886416 23886215 ID=MsG0880043378.01.T01:cds;Parent=MsG0880043378.01.T01
Chr8 CDS 23886528 23886943 23886528 ID=MsG0880043378.01.T01:cds;Parent=MsG0880043378.01.T01
Chr8 CDS 23887543 23887773 23887543 ID=MsG0880043378.01.T01:cds;Parent=MsG0880043378.01.T01
Chr8 CDS 23888674 23888939 23888674 ID=MsG0880043378.01.T01:cds;Parent=MsG0880043378.01.T01
Gene Sequence

>MsG0880043378.01.T01

ATGTTCCGCACCAATTTCATATCCGAACACAACGAGGATAGTGAAAACACACATCTCATCCTAAAGGAAAAGACACAAATGATTCCCTTTCCCTACACCTTATGCACATTTTCTGGTGAGAAGTTGGAGGATGGGGAGAGATTAGATTGTCCACGTCCGTTTCACGAAGATGACTTGGAATTTAAGGTTGTTCCGCCTAGCTTTCAACCGTATGACAACATTGAGTTTAAGATACCTCCTCTGGCATTTGGTTATGATCGTGTTAGACATGACTATAAATTGATCCGGATTGCGTTATTACCCCTAGACTTTGAAGGTAATTGGGTTGAAGTACCTGATAAGGATAGCTATTTGTGGGATGAGGATTATGATCACACTGTCTATCTGGTGAACTTGAATGAATTTTGCCATTGGTTAGGTCCATCTGATGAGATTGTGTCATTTGACTTTATCAATGAGATATTTATTGCCACAACCTTACCCTCTTATAGAAGGTGCAGGGAAAGGGAATCATTTTGCCGGTTACCTAGATTCAGGCTGGAGAGGTACTTAGCAGGGATACATGGGTCTATTGCTTTCATCTCCAATATTGATGATTCAAGTTTTTATGACATATGGATTTTGGGTGAACTCGGTGTTAAAGAATCGTGGATTAAACTCTTTGTTGTTGATGCACCTTGCAGAATGCATCCTTTTGGGGTAGGAATAAAGAGCTTTATATTCTTCATAAAAGATGATGAGGAAATAGCTTGGTATGATTTAAGCACCCAAAGGATCGAGGAGATCAAGGTTAAAGTGGATATGACTCGCAAAAAAATCTGCACGGTCGCTTGGGATATGTTTTGCAAATCAAGAAAGGAGGGAGGTCTTGCTGTTAGAAATCCTCTAATGGTAATAATAGCTGCTCTCCTTCACCTTTGTTGGAAATTGCTAACTAGTGATGATCAATGGGCTGTTATGTGCCGTACTAGATTTTTGAGGGCGGGCAAACCTGTTTCTTATTCCATCTCTTCTTCTATTTGGCATGCTTCACTTCTGCCAAAAATCACATTCCTGTTTCCTTGGCCTTTGCGTGTCAGATGGAAGAACTGTTTAGCCTTAGTTGTAAATTTGAATTATAATTTTTATCATATTCATAGGGAAGGGAATTCTGTAGCGGATGCTTTAGCTAAGAATGGACACAGCTTGCCTAGTTTACACTCACAATGGTGGGAAGAGCCACCTCTTTTTATCTTACCTTTGTTGCAGAGAGATGAGATAGGTTTACCTTATATGAGAATTTCAAACTTGTAA
Protein sequence

>MsG0880043378.01.T01

MFRTNFISEHNEDSENTHLILKEKTQMIPFPYTLCTFSGEKLEDGERLDCPRPFHEDDLEFKVVPPSFQPYDNIEFKIPPLAFGYDRVRHDYKLIRIALLPLDFEGNWVEVPDKDSYLWDEDYDHTVYLVNLNEFCHWLGPSDEIVSFDFINEIFIATTLPSYRRCRERESFCRLPRFRLERYLAGIHGSIAFISNIDDSSFYDIWILGELGVKESWIKLFVVDAPCRMHPFGVGIKSFIFFIKDDEEIAWYDLSTQRIEEIKVKVDMTRKKICTVAWDMFCKSRKEGGLAVRNPLMVIIAALLHLCWKLLTSDDQWAVMCRTRFLRAGKPVSYSISSSIWHASLLPKITFLFPWPLRVRWKNCLALVVNLNYNFYHIHREGNSVADALAKNGHSLPSLHSQWWEEPPLFILPLLQRDEIGLPYMRISNL*