AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043385.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043385.01.T01 MTR_8g033090 84.681 235 36 0 1 235 1 235 3.20e-145 412
MsG0880043385.01.T01 MTR_8g033110 80.426 235 46 0 1 235 1 235 1.32e-134 385
MsG0880043385.01.T01 MTR_8g018110 75.527 237 55 2 1 235 1 236 1.07e-122 354
MsG0880043385.01.T01 MTR_1g053510 55.745 235 103 1 2 235 3 237 4.61e-83 253
MsG0880043385.01.T01 MTR_8g033140 48.606 251 113 4 1 235 1 251 1.64e-67 214
MsG0880043385.01.T01 MTR_8g032980 47.755 245 110 5 1 235 1 237 5.17e-59 192
MsG0880043385.01.T01 MTR_8g046200 42.692 260 115 7 1 235 1 251 8.96e-55 181
MsG0880043385.01.T01 MTR_8g046310 45.041 242 91 6 1 235 1 207 3.60e-54 178
MsG0880043385.01.T01 MTR_8g046220 41.224 245 122 7 2 235 3 236 3.38e-50 169
MsG0880043385.01.T01 MTR_0129s0070 42.982 228 107 8 11 235 14 221 2.18e-45 156
MsG0880043385.01.T01 MTR_1g007410 41.057 246 111 8 1 235 11 233 1.01e-43 152
MsG0880043385.01.T01 MTR_0129s0120 41.667 228 110 8 11 235 14 221 2.39e-42 148
MsG0880043385.01.T01 MTR_5g096630 41.379 232 103 6 14 235 18 226 8.47e-42 147
MsG0880043385.01.T01 MTR_0129s0050 41.633 245 116 11 2 235 4 232 5.02e-41 145
MsG0880043385.01.T01 MTR_4g117550 42.424 231 106 10 11 235 14 223 1.16e-40 143
MsG0880043385.01.T01 MTR_4g055820 38.017 242 124 6 1 235 1 223 2.14e-40 142
MsG0880043385.01.T01 MTR_8g464770 41.393 244 100 10 1 235 1 210 1.15e-39 140
MsG0880043385.01.T01 MTR_8g063440 45.596 193 86 9 1 186 1 181 5.55e-39 139
MsG0880043385.01.T01 MTR_2g038680 40.408 245 125 9 1 235 5 238 9.74e-39 139
MsG0880043385.01.T01 MTR_5g072060 41.485 229 103 7 13 232 5 211 1.79e-37 138
MsG0880043385.01.T01 MTR_7g017130 37.395 238 123 7 1 235 7 221 2.00e-37 135
MsG0880043385.01.T01 MTR_7g017170 37.395 238 123 7 1 235 7 221 2.23e-37 135
MsG0880043385.01.T01 MTR_4g102410 40.408 245 111 12 1 235 50 269 3.38e-37 135
MsG0880043385.01.T01 MTR_2g021770 37.288 236 115 7 14 235 12 228 9.69e-37 133
MsG0880043385.01.T01 MTR_7g069550 36.066 244 128 7 1 235 1 225 1.68e-36 132
MsG0880043385.01.T01 MTR_6g090180 37.449 243 125 6 3 235 37 262 1.99e-36 133
MsG0880043385.01.T01 MTR_7g016930 38.596 228 97 6 11 235 13 200 1.15e-35 129
MsG0880043385.01.T01 MTR_3g011120 38.235 238 117 7 1 235 1 211 1.22e-35 130
MsG0880043385.01.T01 MTR_7g017040 38.053 226 113 5 13 235 15 216 2.44e-35 129
MsG0880043385.01.T01 MTR_8g467670 37.826 230 113 7 9 234 9 212 2.54e-35 129
MsG0880043385.01.T01 MTR_2g021950 35.950 242 120 7 2 235 4 218 9.70e-35 128
MsG0880043385.01.T01 MTR_4g028680 35.857 251 111 9 2 235 4 221 1.97e-34 127
MsG0880043385.01.T01 MTR_2g104340 35.833 240 125 8 1 235 1 216 3.83e-34 126
MsG0880043385.01.T01 MTR_2g021800 38.618 246 120 9 4 235 8 236 5.13e-34 126
MsG0880043385.01.T01 MTR_2g022000 38.750 240 115 8 11 235 13 235 7.65e-34 126
MsG0880043385.01.T01 MTR_1g047080 43.017 179 76 5 51 228 1 154 1.05e-33 123
MsG0880043385.01.T01 MTR_8g064790 41.026 195 107 6 9 199 10 200 1.84e-33 123
MsG0880043385.01.T01 MTR_5g024260 37.131 237 110 7 7 235 15 220 1.89e-33 125
MsG0880043385.01.T01 MTR_5g074850 37.652 247 118 9 1 235 22 244 2.61e-33 127
MsG0880043385.01.T01 MTR_0134s0060 38.189 254 117 11 1 235 1 233 3.55e-33 124
MsG0880043385.01.T01 MTR_6g079810 35.409 257 112 9 3 235 59 285 7.11e-33 124
MsG0880043385.01.T01 MTR_6g086825 35.628 247 118 7 2 235 58 276 8.69e-33 124
MsG0880043385.01.T01 MTR_6g070880 37.083 240 116 9 11 235 29 248 1.74e-32 119
MsG0880043385.01.T01 MTR_6g071420 37.083 240 116 9 11 235 29 248 1.74e-32 119
MsG0880043385.01.T01 MTR_5g097220 38.655 238 111 11 14 235 13 231 2.61e-32 122
MsG0880043385.01.T01 MTR_8g013000 35.865 237 114 9 13 235 9 221 3.27e-32 121
MsG0880043385.01.T01 MTR_1g007450 36.555 238 127 8 1 235 1 217 3.97e-32 121
MsG0880043385.01.T01 MTR_4g028750 34.146 246 122 9 2 235 4 221 5.30e-32 120
MsG0880043385.01.T01 MTR_6g465360 41.089 202 87 9 1 182 51 240 7.49e-32 118
MsG0880043385.01.T01 MTR_8g073570 41.916 167 91 5 13 178 9 170 9.71e-32 114
MsG0880043385.01.T01 MTR_5g097820 35.270 241 115 8 7 235 16 227 1.31e-31 117
MsG0880043385.01.T01 MTR_5g097330 37.849 251 113 10 1 235 5 228 2.37e-31 119
MsG0880043385.01.T01 MTR_5g096900 36.885 244 98 8 11 235 9 215 2.44e-31 117
MsG0880043385.01.T01 MTR_4g028660 33.871 248 119 9 2 235 4 220 9.28e-31 117
MsG0880043385.01.T01 MTR_4g027450 33.871 248 119 9 2 235 4 220 9.28e-31 117
MsG0880043385.01.T01 MTR_5g096910 35.802 243 120 4 3 235 6 222 9.57e-31 117
MsG0880043385.01.T01 MTR_8g012090 41.579 190 89 6 2 180 6 184 9.59e-31 116
MsG0880043385.01.T01 MTR_2g065860 35.656 244 115 9 1 234 1 212 1.46e-30 117
MsG0880043385.01.T01 MTR_0831s0010 37.037 243 111 9 2 235 38 247 1.92e-30 117
MsG0880043385.01.T01 MTR_4g130330 34.855 241 113 8 8 235 1 210 2.28e-30 116
MsG0880043385.01.T01 MTR_0054s0100 35.714 252 118 10 2 235 7 232 2.53e-30 116
MsG0880043385.01.T01 MTR_2g104280 33.858 254 120 10 1 235 1 225 4.64e-30 115
MsG0880043385.01.T01 MTR_0054s0090 36.364 253 114 11 2 235 6 230 6.33e-30 115
MsG0880043385.01.T01 MTR_5g037190 35.470 234 127 7 1 230 5 218 6.39e-30 112
MsG0880043385.01.T01 MTR_1g007430 38.028 213 110 8 25 234 7 200 8.94e-30 113
MsG0880043385.01.T01 MTR_8g064890 36.864 236 118 9 7 235 9 220 9.71e-30 114
MsG0880043385.01.T01 MTR_2g034700 35.417 240 119 7 1 235 1 209 1.15e-29 114
MsG0880043385.01.T01 MTR_4g028510 33.466 251 119 9 2 235 4 223 1.91e-29 114
MsG0880043385.01.T01 MTR_6g080680 34.375 256 102 9 1 234 7 218 2.02e-29 114
MsG0880043385.01.T01 MTR_6g461660 33.761 234 122 7 13 235 18 229 2.53e-29 113
MsG0880043385.01.T01 MTR_6g079770 36.515 241 115 9 13 234 16 237 2.93e-29 114
MsG0880043385.01.T01 MTR_2g065840 34.016 244 120 7 1 234 1 213 3.20e-29 113
MsG0880043385.01.T01 MTR_4g014370 35.714 266 106 11 3 235 2 235 8.02e-29 112
MsG0880043385.01.T01 MTR_5g075370 36.364 242 115 8 9 235 3 220 1.40e-28 113
MsG0880043385.01.T01 MTR_8g039500 33.617 235 119 6 1 234 1 199 1.47e-28 110
MsG0880043385.01.T01 MTR_7g079640 38.251 183 104 4 13 191 12 189 1.71e-28 111
MsG0880043385.01.T01 MTR_5g092850 33.333 243 127 7 3 235 5 222 3.06e-28 110
MsG0880043385.01.T01 MTR_5g037680 35.124 242 103 8 10 235 4 207 9.92e-28 110
MsG0880043385.01.T01 MTR_5g022850 34.783 230 80 8 12 235 14 179 1.74e-27 107
MsG0880043385.01.T01 MTR_2g066170 34.568 243 117 8 1 235 1 209 1.85e-27 108
MsG0880043385.01.T01 MTR_8g041270 34.137 249 127 11 1 235 1 226 6.13e-27 107
MsG0880043385.01.T01 MTR_2g064950 34.348 230 116 6 13 235 9 210 2.54e-26 105
MsG0880043385.01.T01 MTR_8g033000 38.384 198 96 8 51 235 1 185 8.44e-26 103
MsG0880043385.01.T01 MTR_5g097680 32.342 269 122 10 1 235 6 248 9.01e-26 104
MsG0880043385.01.T01 MTR_1g076810 33.766 231 113 7 13 234 17 216 1.18e-25 105
MsG0880043385.01.T01 MTR_6g478230 37.245 196 103 8 3 186 16 203 1.28e-25 103
MsG0880043385.01.T01 MTR_5g097650 40.000 155 79 4 5 159 13 153 1.37e-25 98.6
MsG0880043385.01.T01 MTR_5g059430 32.400 250 117 9 10 234 22 244 3.38e-25 102
MsG0880043385.01.T01 MTR_2g066200 32.500 240 124 8 1 234 1 208 6.63e-25 101
MsG0880043385.01.T01 MTR_8g063330 34.016 244 126 10 1 235 1 218 8.72e-25 102
MsG0880043385.01.T01 MTR_2g066150 35.829 187 108 5 1 186 1 176 1.16e-24 100
MsG0880043385.01.T01 MTR_5g097350 35.345 232 95 11 23 235 25 220 1.16e-24 100
MsG0880043385.01.T01 MTR_1g050308 35.204 196 112 7 1 190 23 209 2.62e-24 99.4
MsG0880043385.01.T01 MTR_5g069390 34.711 242 115 11 10 234 22 237 1.28e-23 99.0
MsG0880043385.01.T01 MTR_2g104260 34.274 248 127 10 1 235 1 225 2.39e-23 95.5
MsG0880043385.01.T01 MTR_7g104710 42.484 153 78 6 2 151 6 151 6.79e-23 95.1
MsG0880043385.01.T01 MTR_3g047580 34.211 152 73 3 1 150 1 127 8.79e-23 90.1
MsG0880043385.01.T01 MTR_8g063370 29.864 221 120 7 18 234 28 217 8.85e-22 92.8
MsG0880043385.01.T01 MTR_8g036970 39.583 144 80 5 18 156 2 143 9.82e-22 92.4
MsG0880043385.01.T01 MTR_5g094350 31.746 252 113 10 1 234 1 211 3.99e-21 89.4
MsG0880043385.01.T01 MTR_3g019290 34.574 188 81 5 1 185 1 149 6.05e-21 87.0
MsG0880043385.01.T01 MTR_5g091140 32.203 236 119 7 2 234 36 233 7.83e-21 90.5
MsG0880043385.01.T01 MTR_7g111700 33.761 234 111 10 13 234 14 215 3.16e-20 88.2
MsG0880043385.01.T01 MTR_1g098180 31.535 241 111 9 1 233 1 195 1.72e-19 86.3
MsG0880043385.01.T01 MTR_5g074800 34.375 192 93 7 54 235 2 170 3.85e-19 85.1
MsG0880043385.01.T01 MTR_4g014370 41.912 136 63 6 3 130 13 140 2.83e-18 82.4
MsG0880043385.01.T01 MTR_8g063310 31.977 172 108 6 11 182 19 181 3.49e-18 82.8
MsG0880043385.01.T01 MTR_5g096070 35.152 165 79 3 11 175 23 159 1.29e-17 77.4
MsG0880043385.01.T01 MTR_1g115205 32.766 235 89 11 14 235 29 207 2.18e-17 79.0
MsG0880043385.01.T01 MTR_5g049560 37.162 148 78 4 51 183 1 148 3.21e-16 75.9
MsG0880043385.01.T01 MTR_8g035690 44.330 97 46 3 147 235 38 134 1.45e-15 74.7
MsG0880043385.01.T01 MTR_5g064700 30.244 205 99 8 55 235 3 187 5.45e-14 70.9
MsG0880043385.01.T01 MTR_6g090260 56.667 60 26 0 1 60 7 66 7.41e-14 69.3
MsG0880043385.01.T01 MTR_5g092860 29.665 209 113 7 32 235 20 199 1.45e-12 66.6
MsG0880043385.01.T01 MTR_6g078010 36.424 151 76 7 51 187 1 145 1.50e-12 66.2
MsG0880043385.01.T01 MTR_2g021860 38.824 85 51 1 99 182 16 100 1.90e-12 63.2
MsG0880043385.01.T01 MTR_8g041440 40.541 74 44 0 11 84 12 85 1.50e-11 60.1
MsG0880043385.01.T01 MTR_1g068835 31.492 181 86 8 14 183 4 157 1.84e-11 63.2
MsG0880043385.01.T01 MTR_2g031720 26.519 181 100 5 14 186 6 161 2.11e-11 63.2
MsG0880043385.01.T01 MTR_8g090195 52.727 55 20 1 141 195 10 58 2.14e-11 59.7
MsG0880043385.01.T01 MTR_5g091150 37.864 103 39 4 99 180 3 101 2.97e-11 61.2
MsG0880043385.01.T01 MTR_6g079790 33.333 144 66 5 99 235 3 123 6.62e-11 61.2
MsG0880043385.01.T01 MTR_2g028160 27.094 203 98 7 11 185 2 182 7.50e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAGACTTTGAATGTAAT+TGG 0.097570 8:+24019871 MsG0880043385.01.T01:CDS
TGACTTACGTATTGAGATTT+TGG 0.132248 8:+24019638 MsG0880043385.01.T01:CDS
TCCTACTACCACAGAATTTA+AGG 0.152280 8:+24019734 MsG0880043385.01.T01:CDS
TCTGATAAGGATATCGATTT+TGG 0.195044 8:+24019903 MsG0880043385.01.T01:CDS
TAACACTTGTGAATCGTTTC+AGG 0.206408 8:-24019401 None:intergenic
TGGAGATGAACGACCCTTTA+TGG 0.222183 8:+24019967 MsG0880043385.01.T01:CDS
AATCACGGGTTTGAAATAAA+AGG 0.224280 8:-24019437 None:intergenic
CCAATTACATTCAAAGTCTA+AGG 0.242102 8:-24019871 None:intergenic
CAGGGATTGAAGAGGCAATT+TGG 0.275037 8:-24019382 None:intergenic
GCCTCAAAAGTAACTCTTAG+AGG 0.312558 8:+24020000 MsG0880043385.01.T01:CDS
TCCACTGTCCTCGTTGTGTT+TGG 0.347464 8:-24019490 None:intergenic
AAGACACCTCCTTTGGCATT+TGG 0.350220 8:+24019798 MsG0880043385.01.T01:CDS
CGTAAGTCATCTTCATGAAA+TGG 0.372795 8:-24019624 None:intergenic
AGGCTATATATCTCCCATAA+AGG 0.373541 8:-24019981 None:intergenic
TTGGGTTGATGTTTCTGATA+AGG 0.386369 8:+24019890 MsG0880043385.01.T01:CDS
CTTAGACTTTGAATGTAATT+GGG 0.394327 8:+24019872 MsG0880043385.01.T01:CDS
GTTGTGTTTGGATAAGAAAT+TGG 0.397953 8:-24019478 None:intergenic
TTGTCATACGGTTGAAAGAT+AGG 0.402248 8:-24019765 None:intergenic
TGAGGTTAAGACACCTCCTT+TGG 0.411942 8:+24019791 MsG0880043385.01.T01:CDS
CTGGTGAGAAGTTGGAGGAT+GGG 0.433719 8:+24019580 MsG0880043385.01.T01:CDS
ACCTTAAATTCTGTGGTAGT+AGG 0.448222 8:-24019735 None:intergenic
GGAGATGAACGACCCTTTAT+GGG 0.448311 8:+24019968 MsG0880043385.01.T01:CDS
TGGTGAGAAGTTGGAGGATG+GGG 0.453715 8:+24019581 MsG0880043385.01.T01:CDS
GGCTATATATCTCCCATAAA+GGG 0.459401 8:-24019980 None:intergenic
TCTGGTGAGAAGTTGGAGGA+TGG 0.462780 8:+24019579 MsG0880043385.01.T01:CDS
ATATAGAAAGCAAGGTCGTT+AGG 0.469521 8:-24019354 None:intergenic
AACACTTGTGAATCGTTTCA+GGG 0.470068 8:-24019400 None:intergenic
GGCTGCTGCAACACATAAGC+TGG 0.477325 8:+24019314 MsG0880043385.01.T01:CDS
GTGCAGAAGGTGTAGGGAAA+GGG 0.483021 8:-24019552 None:intergenic
CTAAGGGATAATACGCAATC+CGG 0.486339 8:-24019854 None:intergenic
ATCACGGGTTTGAAATAAAA+GGG 0.487031 8:-24019436 None:intergenic
GATATGACTATAAGTTGATC+CGG 0.487394 8:+24019835 MsG0880043385.01.T01:CDS
GAACTTGTTCATAAAATCAC+GGG 0.515614 8:-24019451 None:intergenic
GAAAATGTGCAGAAGGTGTA+GGG 0.535721 8:-24019558 None:intergenic
TGTGCAGAAGGTGTAGGGAA+AGG 0.550054 8:-24019553 None:intergenic
TTAACCTCAATGTTGTCATA+CGG 0.554316 8:-24019777 None:intergenic
AGAAAATGTGCAGAAGGTGT+AGG 0.561114 8:-24019559 None:intergenic
ACAACACAATTATTGTGTCA+TGG 0.562293 8:-24019707 None:intergenic
TCATCTTCATGAAATGGAGG+TGG 0.567538 8:-24019618 None:intergenic
GGAACTTGTTCATAAAATCA+CGG 0.569391 8:-24019452 None:intergenic
TGGAAAGAATATAGAAAGCA+AGG 0.576013 8:-24019362 None:intergenic
AAGCACACGTCTCATCCTAA+AGG 0.578789 8:+24019512 MsG0880043385.01.T01:CDS
AAATGCCTTTGTAGAGACAA+AGG 0.580461 8:-24019683 None:intergenic
AATGCCTTTGTAGAGACAAA+GGG 0.586152 8:-24019682 None:intergenic
CTCACCAGAAAATGTGCAGA+AGG 0.606828 8:-24019565 None:intergenic
CAATTACATTCAAAGTCTAA+GGG 0.610611 8:-24019870 None:intergenic
TCAACCGTATGACAACATTG+AGG 0.617658 8:+24019773 MsG0880043385.01.T01:CDS
AGGAACAACCTTAAATTCTG+TGG 0.623204 8:-24019742 None:intergenic
ATGACACAATAATTGTGTTG+TGG 0.625393 8:+24019709 MsG0880043385.01.T01:CDS
TGATCATAACCAAATGCCAA+AGG 0.636677 8:-24019807 None:intergenic
AATCGTTTCAGGGATTGAAG+AGG 0.637132 8:-24019390 None:intergenic
TCCAAACACAACGAGGACAG+TGG 0.649237 8:+24019489 MsG0880043385.01.T01:CDS
GGCACCCTTTGTCTCTACAA+AGG 0.655676 8:+24019678 MsG0880043385.01.T01:CDS
AAGTCATCTTCATGAAATGG+AGG 0.661997 8:-24019621 None:intergenic
TCATAACCAAATGCCAAAGG+AGG 0.671524 8:-24019804 None:intergenic
TCATACGGTTGAAAGATAGG+AGG 0.681538 8:-24019762 None:intergenic
TTTCTTATCCAAACACAACG+AGG 0.709545 8:+24019482 MsG0880043385.01.T01:CDS
GTTTGGATAAGAAATTGGTG+CGG 0.791151 8:-24019473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CAATTACATTCAAAGTCTAA+GGG - Chr8:24019873-24019892 None:intergenic 25.0%
! CTTAGACTTTGAATGTAATT+GGG + Chr8:24019872-24019891 MsG0880043385.01.T01:CDS 25.0%
!!! TCATTTGTTTCTTTTCCTTT+AGG - Chr8:24019530-24019549 None:intergenic 25.0%
ACAACACAATTATTGTGTCA+TGG - Chr8:24019710-24019729 None:intergenic 30.0%
ATGACACAATAATTGTGTTG+TGG + Chr8:24019709-24019728 MsG0880043385.01.T01:CDS 30.0%
CCAATTACATTCAAAGTCTA+AGG - Chr8:24019874-24019893 None:intergenic 30.0%
CCTTAGACTTTGAATGTAAT+TGG + Chr8:24019871-24019890 MsG0880043385.01.T01:CDS 30.0%
GTTGTGTTTGGATAAGAAAT+TGG - Chr8:24019481-24019500 None:intergenic 30.0%
TGGAAAGAATATAGAAAGCA+AGG - Chr8:24019365-24019384 None:intergenic 30.0%
TTAACCTCAATGTTGTCATA+CGG - Chr8:24019780-24019799 None:intergenic 30.0%
! AATCACGGGTTTGAAATAAA+AGG - Chr8:24019440-24019459 None:intergenic 30.0%
! ATCACGGGTTTGAAATAAAA+GGG - Chr8:24019439-24019458 None:intergenic 30.0%
! GAACTTGTTCATAAAATCAC+GGG - Chr8:24019454-24019473 None:intergenic 30.0%
! GACTTACGTATTGAGATTTT+GGG + Chr8:24019639-24019658 MsG0880043385.01.T01:CDS 30.0%
! GGAACTTGTTCATAAAATCA+CGG - Chr8:24019455-24019474 None:intergenic 30.0%
! TGACTTACGTATTGAGATTT+TGG + Chr8:24019638-24019657 MsG0880043385.01.T01:CDS 30.0%
! TGGATTACGATCATACTTTT+TGG + Chr8:24019931-24019950 MsG0880043385.01.T01:CDS 30.0%
!! GATATGACTATAAGTTGATC+CGG + Chr8:24019835-24019854 MsG0880043385.01.T01:CDS 30.0%
!! GGATTACGATCATACTTTTT+GGG + Chr8:24019932-24019951 MsG0880043385.01.T01:CDS 30.0%
!!! TCTGATAAGGATATCGATTT+TGG + Chr8:24019903-24019922 MsG0880043385.01.T01:CDS 30.0%
AAATGCCTTTGTAGAGACAA+AGG - Chr8:24019686-24019705 None:intergenic 35.0%
AACACTTGTGAATCGTTTCA+GGG - Chr8:24019403-24019422 None:intergenic 35.0%
AAGTCATCTTCATGAAATGG+AGG - Chr8:24019624-24019643 None:intergenic 35.0%
AATGCCTTTGTAGAGACAAA+GGG - Chr8:24019685-24019704 None:intergenic 35.0%
ACCTTAAATTCTGTGGTAGT+AGG - Chr8:24019738-24019757 None:intergenic 35.0%
AGGAACAACCTTAAATTCTG+TGG - Chr8:24019745-24019764 None:intergenic 35.0%
AGGCTATATATCTCCCATAA+AGG - Chr8:24019984-24020003 None:intergenic 35.0%
ATATAGAAAGCAAGGTCGTT+AGG - Chr8:24019357-24019376 None:intergenic 35.0%
CGTAAGTCATCTTCATGAAA+TGG - Chr8:24019627-24019646 None:intergenic 35.0%
GGCTATATATCTCCCATAAA+GGG - Chr8:24019983-24020002 None:intergenic 35.0%
GTTTGGATAAGAAATTGGTG+CGG - Chr8:24019476-24019495 None:intergenic 35.0%
TAACACTTGTGAATCGTTTC+AGG - Chr8:24019404-24019423 None:intergenic 35.0%
TCCTACTACCACAGAATTTA+AGG + Chr8:24019734-24019753 MsG0880043385.01.T01:CDS 35.0%
TGATCATAACCAAATGCCAA+AGG - Chr8:24019810-24019829 None:intergenic 35.0%
TTGTCATACGGTTGAAAGAT+AGG - Chr8:24019768-24019787 None:intergenic 35.0%
TTTCTTATCCAAACACAACG+AGG + Chr8:24019482-24019501 MsG0880043385.01.T01:CDS 35.0%
! TTGGGTTTTGCAAGTGTTAA+TGG + Chr8:24019657-24019676 MsG0880043385.01.T01:CDS 35.0%
!! TTGGGTTGATGTTTCTGATA+AGG + Chr8:24019890-24019909 MsG0880043385.01.T01:CDS 35.0%
!!! ACGATCATACTTTTTGGGAT+AGG + Chr8:24019937-24019956 MsG0880043385.01.T01:CDS 35.0%
AATCGTTTCAGGGATTGAAG+AGG - Chr8:24019393-24019412 None:intergenic 40.0%
CTAAGGGATAATACGCAATC+CGG - Chr8:24019857-24019876 None:intergenic 40.0%
TCAACCGTATGACAACATTG+AGG + Chr8:24019773-24019792 MsG0880043385.01.T01:CDS 40.0%
TCATAACCAAATGCCAAAGG+AGG - Chr8:24019807-24019826 None:intergenic 40.0%
TCATACGGTTGAAAGATAGG+AGG - Chr8:24019765-24019784 None:intergenic 40.0%
TCATCTTCATGAAATGGAGG+TGG - Chr8:24019621-24019640 None:intergenic 40.0%
! AGAAAATGTGCAGAAGGTGT+AGG - Chr8:24019562-24019581 None:intergenic 40.0%
! GAAAATGTGCAGAAGGTGTA+GGG - Chr8:24019561-24019580 None:intergenic 40.0%
! TACACCTTCTGCACATTTTC+TGG + Chr8:24019561-24019580 MsG0880043385.01.T01:CDS 40.0%
!! ATTTTCTGGTGAGAAGTTGG+AGG + Chr8:24019575-24019594 MsG0880043385.01.T01:CDS 40.0%
!! CACATTTTCTGGTGAGAAGT+TGG + Chr8:24019572-24019591 MsG0880043385.01.T01:CDS 40.0%
!!! GGATATCGATTTTGGTGATG+TGG + Chr8:24019911-24019930 MsG0880043385.01.T01:CDS 40.0%
AAGACACCTCCTTTGGCATT+TGG + Chr8:24019798-24019817 MsG0880043385.01.T01:CDS 45.0%
AAGCACACGTCTCATCCTAA+AGG + Chr8:24019512-24019531 MsG0880043385.01.T01:CDS 45.0%
CAGGGATTGAAGAGGCAATT+TGG - Chr8:24019385-24019404 None:intergenic 45.0%
CTCACCAGAAAATGTGCAGA+AGG - Chr8:24019568-24019587 None:intergenic 45.0%
GGAGATGAACGACCCTTTAT+GGG + Chr8:24019968-24019987 MsG0880043385.01.T01:CDS 45.0%
TGAGGTTAAGACACCTCCTT+TGG + Chr8:24019791-24019810 MsG0880043385.01.T01:CDS 45.0%
TGGAGATGAACGACCCTTTA+TGG + Chr8:24019967-24019986 MsG0880043385.01.T01:CDS 45.0%
!!! TACTTTTTGGGATAGGCGAG+TGG + Chr8:24019944-24019963 MsG0880043385.01.T01:CDS 45.0%
CTGGTGAGAAGTTGGAGGAT+GGG + Chr8:24019580-24019599 MsG0880043385.01.T01:CDS 50.0%
GGCACCCTTTGTCTCTACAA+AGG + Chr8:24019678-24019697 MsG0880043385.01.T01:CDS 50.0%
TCCAAACACAACGAGGACAG+TGG + Chr8:24019489-24019508 MsG0880043385.01.T01:CDS 50.0%
TCCACTGTCCTCGTTGTGTT+TGG - Chr8:24019493-24019512 None:intergenic 50.0%
TCTGGTGAGAAGTTGGAGGA+TGG + Chr8:24019579-24019598 MsG0880043385.01.T01:CDS 50.0%
TGGTGAGAAGTTGGAGGATG+GGG + Chr8:24019581-24019600 MsG0880043385.01.T01:CDS 50.0%
! GTGCAGAAGGTGTAGGGAAA+GGG - Chr8:24019555-24019574 None:intergenic 50.0%
! TGTGCAGAAGGTGTAGGGAA+AGG - Chr8:24019556-24019575 None:intergenic 50.0%
!!! TTTTTGGGATAGGCGAGTGG+TGG + Chr8:24019947-24019966 MsG0880043385.01.T01:CDS 50.0%
GGCTGCTGCAACACATAAGC+TGG + Chr8:24019314-24019333 MsG0880043385.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 24019312 24020019 24019312 ID=MsG0880043385.01;Name=MsG0880043385.01
Chr8 mRNA 24019312 24020019 24019312 ID=MsG0880043385.01.T01;Parent=MsG0880043385.01;Name=MsG0880043385.01.T01;_AED=0.43;_eAED=0.43;_QI=0|-1|0|1|-1|1|1|0|235
Chr8 exon 24019312 24020019 24019312 ID=MsG0880043385.01.T01:exon:8799;Parent=MsG0880043385.01.T01
Chr8 CDS 24019312 24020019 24019312 ID=MsG0880043385.01.T01:cds;Parent=MsG0880043385.01.T01
Gene Sequence

>MsG0880043385.01.T01

ATGGCTGCTGCAACACATAAGCTGGCAAGTACTGCTTACATTCCTAACGACCTTGCTTTCTATATTCTTTCCAAATTGCCTCTTCAATCCCTGAAACGATTCACAAGTGTTAAAAAATCATTTTCCCTTTTATTTCAAACCCGTGATTTTATGAACAAGTTCCGCACCAATTTCTTATCCAAACACAACGAGGACAGTGGAAGCACACGTCTCATCCTAAAGGAAAAGAAACAAATGATTCCCTTTCCCTACACCTTCTGCACATTTTCTGGTGAGAAGTTGGAGGATGGGGAGAGATTAGATTGTCCACCTCCATTTCATGAAGATGACTTACGTATTGAGATTTTGGGTTTTGCAAGTGTTAATGGCACCCTTTGTCTCTACAAAGGCATTTACCATGACACAATAATTGTGTTGTGGAATCCTACTACCACAGAATTTAAGGTTGTTCCTCCTATCTTTCAACCGTATGACAACATTGAGGTTAAGACACCTCCTTTGGCATTTGGTTATGATCATGTTAGATATGACTATAAGTTGATCCGGATTGCGTATTATCCCTTAGACTTTGAATGTAATTGGGTTGATGTTTCTGATAAGGATATCGATTTTGGTGATGTGGATTACGATCATACTTTTTGGGATAGGCGAGTGGTGGAGATGAACGACCCTTTATGGGAGATATATAGCCTCAAAAGTAACTCTTAG
Protein sequence

>MsG0880043385.01.T01

MAAATHKLASTAYIPNDLAFYILSKLPLQSLKRFTSVKKSFSLLFQTRDFMNKFRTNFLSKHNEDSGSTRLILKEKKQMIPFPYTFCTFSGEKLEDGERLDCPPPFHEDDLRIEILGFASVNGTLCLYKGIYHDTIIVLWNPTTTEFKVVPPIFQPYDNIEVKTPPLAFGYDHVRYDYKLIRIAYYPLDFECNWVDVSDKDIDFGDVDYDHTFWDRRVVEMNDPLWEIYSLKSNS*