AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031349.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031349.01.T01 MTR_6g018680 89.051 685 62 3 1 674 1 683 0.0 1247
MsG0680031349.01.T01 MTR_2g066110 29.455 404 266 9 83 469 78 479 3.81e-44 165
MsG0680031349.01.T01 MTR_8g009680 40.609 197 106 3 470 657 120 314 1.26e-40 151
MsG0680031349.01.T01 MTR_2g066120 29.750 400 259 9 82 464 7 401 2.92e-40 152
MsG0680031349.01.T01 MTR_2g066130 29.250 400 261 9 82 464 7 401 9.07e-40 151
MsG0680031349.01.T01 MTR_8g009700 38.579 197 110 3 470 657 83 277 1.11e-37 142
MsG0680031349.01.T01 MTR_1242s0010 27.230 213 140 5 265 464 16 226 2.00e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031349.01.T01 AT3G12780 30.296 406 260 10 83 469 80 481 3.91e-45 168
MsG0680031349.01.T01 AT1G56190 30.127 395 257 9 92 469 13 405 6.90e-44 163
MsG0680031349.01.T01 AT1G56190 30.127 395 257 9 92 469 86 478 2.43e-43 163
MsG0680031349.01.T01 AT1G79550 29.000 400 262 9 82 464 7 401 1.84e-42 159
MsG0680031349.01.T01 AT1G79550 29.000 400 262 9 82 464 7 401 1.84e-42 159
MsG0680031349.01.T01 AT5G17660 40.102 197 115 2 471 664 116 312 2.57e-39 147

Find 115 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATACAGAAAATAATT+TGG 0.158783 6:-18707519 MsG0680031349.01.T01:intron
TTCTGAAATTTGACAACTTT+TGG 0.162141 6:+18710545 None:intergenic
AAGAGATGTACCTTAGAATT+TGG 0.190349 6:+18711805 None:intergenic
TGCTACATATGGTTTCTTAT+TGG 0.205027 6:+18708541 None:intergenic
CAATCTCTTGTGGTTGATAT+TGG 0.219246 6:-18706780 MsG0680031349.01.T01:CDS
TACCTTACAAATTTATTTAC+AGG 0.229245 6:+18707983 None:intergenic
AGGAAAGATTTGAACTTTCT+TGG 0.253177 6:-18706582 MsG0680031349.01.T01:CDS
TTTCCTAGGGAGGAGCTATT+TGG 0.263940 6:-18709147 MsG0680031349.01.T01:CDS
CACAAATGGAGCATCTAAAT+TGG 0.270273 6:-18707461 MsG0680031349.01.T01:CDS
CGGAGAATGGCCAAAGTAAT+TGG 0.279690 6:-18705286 MsG0680031349.01.T01:CDS
AAGAAAGCTCCCTGGTGTTT+TGG 0.283155 6:-18707290 MsG0680031349.01.T01:CDS
ATGAAAACCCATTTGGAGTT+AGG 0.283264 6:-18705259 MsG0680031349.01.T01:CDS
GTCAAATTTCAGAAATATAA+TGG 0.303499 6:-18710536 MsG0680031349.01.T01:CDS
TGTTAGATTTACATTGATAA+TGG 0.311231 6:-18709213 MsG0680031349.01.T01:intron
TTAATTCATCAACCCTTTGA+TGG 0.319115 6:-18705120 MsG0680031349.01.T01:exon
TATGCATGATTCAACTTGTT+TGG 0.319307 6:+18705074 None:intergenic
TGAAATCTGATTGATTCTTC+TGG 0.327378 6:+18709070 None:intergenic
GAAATATAATGGTGCTCTAT+TGG 0.327541 6:-18710525 MsG0680031349.01.T01:CDS
GCAGTTTCAATCTAGTGAAT+TGG 0.334346 6:-18710670 MsG0680031349.01.T01:intron
CAAATGTGTTCCAAATTCTA+AGG 0.334475 6:-18711815 MsG0680031349.01.T01:intron
AGATTTGAACTTTCTTGGTT+TGG 0.339411 6:-18706577 MsG0680031349.01.T01:CDS
GACAAGCTATCAGAGATTAA+AGG 0.350979 6:-18708803 MsG0680031349.01.T01:CDS
TTCTGCTATGCTTGTCTAGC+TGG 0.352678 6:-18708611 MsG0680031349.01.T01:CDS
ACAAAATCGGTTGCAGTTGC+AGG 0.358296 6:-18708961 MsG0680031349.01.T01:intron
ATACAAGTTATTCCACTTCA+AGG 0.362776 6:-18708836 MsG0680031349.01.T01:CDS
TTCGGAACTTTGCACAAAAT+CGG 0.372292 6:-18708974 MsG0680031349.01.T01:CDS
TGGCTTGATGAAAACCCATT+TGG 0.372419 6:-18705266 MsG0680031349.01.T01:CDS
TGTTTAAGAAGACTTGTTCA+TGG 0.377504 6:+18710624 None:intergenic
GGTAAGCTTGTTTCGGAGAA+TGG 0.382011 6:-18705299 MsG0680031349.01.T01:CDS
TTTCAAATAATGCATGCATT+AGG 0.383644 6:-18708308 MsG0680031349.01.T01:CDS
TCTCTAAGAGTTTGTATATG+AGG 0.387618 6:+18709171 None:intergenic
ATTGGAGATAACTGAAGTTT+CGG 0.387837 6:-18705171 MsG0680031349.01.T01:CDS
CAGAGAAAGCAGCTTCCTTT+CGG 0.391800 6:-18708379 MsG0680031349.01.T01:CDS
CAATCTGACCTAACTCCAAA+TGG 0.392554 6:+18705251 None:intergenic
CAACAGTTTGACATAAAGAA+TGG 0.396181 6:-18706413 MsG0680031349.01.T01:CDS
TTGCAAGGGTAAGCTTGTTT+CGG 0.396704 6:-18705306 MsG0680031349.01.T01:CDS
CATATCCTTTCGAAATCAAC+TGG 0.403303 6:-18706827 MsG0680031349.01.T01:CDS
TCAATAAACCTGAAAATAGA+TGG 0.404433 6:-18705901 MsG0680031349.01.T01:CDS
GTGGAATAACTTGTATTTGA+AGG 0.405723 6:+18708843 None:intergenic
GTTGGTTCTTGTATCAATAC+AGG 0.411516 6:-18706183 MsG0680031349.01.T01:intron
TTTACAGGTCCAAGGTCAAC+AGG 0.414423 6:+18707998 None:intergenic
AAACTCTTAGAGAATTTCCT+AGG 0.415158 6:-18709161 MsG0680031349.01.T01:CDS
AGTACCGGTTCCTATTGATT+TGG 0.416766 6:-18708285 MsG0680031349.01.T01:CDS
TTGAGAATGCTTCGGTTGTA+TGG 0.416857 6:-18707327 MsG0680031349.01.T01:CDS
AGGCATACAATTGCTACATA+TGG 0.421000 6:+18708530 None:intergenic
GGTTTATTGAAATCAGGGTT+TGG 0.423467 6:+18705914 None:intergenic
TTTCATCAAGCCAATTACTT+TGG 0.437930 6:+18705276 None:intergenic
CATTTGGAGTTAGGTCAGAT+TGG 0.439570 6:-18705250 MsG0680031349.01.T01:CDS
GTTCATGGATAATCTTCATA+AGG 0.442607 6:+18710639 None:intergenic
ATTTGGAGTTAGGTCAGATT+GGG 0.448877 6:-18705249 MsG0680031349.01.T01:CDS
TTACGGTCCACCAAATCAAT+AGG 0.453766 6:+18708275 None:intergenic
GGTTGGGTGCCTGTTGACCT+TGG 0.455828 6:-18708007 MsG0680031349.01.T01:CDS
GTGGTGGATCTTCTAGCATC+TGG 0.456954 6:-18705848 MsG0680031349.01.T01:CDS
GAAAACATCATTCGGTACAT+AGG 0.457434 6:+18705200 None:intergenic
ACCGGTTCCTATTGATTTGG+TGG 0.460226 6:-18708282 MsG0680031349.01.T01:CDS
AAATATGCTTGAGAATGCTT+CGG 0.467472 6:-18707335 MsG0680031349.01.T01:CDS
ATTAAATATTTACATGAAGC+CGG 0.468498 6:-18709033 MsG0680031349.01.T01:CDS
ATGATTTAGAAAACATCATT+CGG 0.474187 6:+18705192 None:intergenic
TTCTTCTTGAAATGGCGAAA+AGG 0.475726 6:-18706605 MsG0680031349.01.T01:CDS
AGGTCATCCTGGTCAGTGAT+TGG 0.478276 6:-18709005 MsG0680031349.01.T01:CDS
TTTCAGGTTTATTGAAATCA+GGG 0.480490 6:+18705909 None:intergenic
ACAGGAAATGGAGAGTTAGC+AGG 0.481065 6:-18710282 MsG0680031349.01.T01:intron
GATCAAAGTGAACACACAAA+TGG 0.482234 6:-18707475 MsG0680031349.01.T01:CDS
AACAGTTTGACATAAAGAAT+GGG 0.487062 6:-18706412 MsG0680031349.01.T01:intron
TTCTTCTTACCCTGGAGAGT+TGG 0.490193 6:-18706201 MsG0680031349.01.T01:CDS
TCTCATACAATTCAGATTGG+AGG 0.499200 6:-18708413 MsG0680031349.01.T01:intron
ATACAGAAAATAATTTGGAT+TGG 0.500099 6:-18707514 MsG0680031349.01.T01:intron
TCCACCAAATCAATAGGAAC+CGG 0.505581 6:+18708281 None:intergenic
GATAATGGAGGAAAGTTGAA+TGG 0.508396 6:-18709198 MsG0680031349.01.T01:CDS
AGCTCAAAGTAATCCATCAA+AGG 0.511725 6:+18705107 None:intergenic
GAGCTTCACTAAATGCCTTA+CGG 0.512317 6:+18708258 None:intergenic
TATTGATTTGGTGGACCGTA+AGG 0.513262 6:-18708273 MsG0680031349.01.T01:CDS
TGGTTTGGAGATGAATGAAA+AGG 0.513271 6:-18706562 MsG0680031349.01.T01:intron
TGTCAACTCATTCAACCATA+AGG 0.520513 6:-18710253 MsG0680031349.01.T01:intron
AACTGTGAAATAACTGTTGT+TGG 0.523014 6:-18707409 MsG0680031349.01.T01:CDS
GCTCAAAGTAATCCATCAAA+GGG 0.523544 6:+18705108 None:intergenic
GATACAAGAACCAACTCTCC+AGG 0.523598 6:+18706191 None:intergenic
ATCTTTAATTGAAGCAGTGG+TGG 0.525354 6:-18705864 MsG0680031349.01.T01:CDS
CAAATTTATTTACAGGTCCA+AGG 0.525894 6:+18707990 None:intergenic
CAGTGATTGGACAAACCCTT+CGG 0.529460 6:-18708992 MsG0680031349.01.T01:CDS
TTTCCAAATAGCTCCTCCCT+AGG 0.531477 6:+18709144 None:intergenic
TAAAACTACGTGTATTATGT+AGG 0.547214 6:+18711886 None:intergenic
CTATCAAGAGCCAAAACACC+AGG 0.549378 6:+18707280 None:intergenic
TTATTCCAGTTGATTTCGAA+AGG 0.549578 6:+18706822 None:intergenic
AACAAAACCCTGACATCTGA+AGG 0.553762 6:+18708349 None:intergenic
GACCAGGATGACCTTTGCTC+CGG 0.554244 6:+18709014 None:intergenic
AATGCATGCATTAGGAGTAC+CGG 0.555270 6:-18708300 MsG0680031349.01.T01:CDS
AACTTTATGAGAGTTTGAGA+AGG 0.556596 6:+18708661 None:intergenic
TCTTCTTAAACATTTCATGT+TGG 0.556890 6:-18710613 MsG0680031349.01.T01:CDS
TAGATTTACATTGATAATGG+AGG 0.558111 6:-18709210 MsG0680031349.01.T01:CDS
AACTCTTAGAGAATTTCCTA+GGG 0.558416 6:-18709160 MsG0680031349.01.T01:CDS
TGAGAATGCTTCGGTTGTAT+GGG 0.559606 6:-18707326 MsG0680031349.01.T01:CDS
CTTGTGGTTGATATTGGAAG+TGG 0.560186 6:-18706774 MsG0680031349.01.T01:intron
AATCTGACCTAACTCCAAAT+GGG 0.561481 6:+18705252 None:intergenic
TCAATCGTTTCTTCTTACCC+TGG 0.565462 6:-18706209 MsG0680031349.01.T01:CDS
CTCAAAGGAAGAAAGCTCCC+TGG 0.567863 6:-18707298 MsG0680031349.01.T01:CDS
GAGATCTTTAATTGAAGCAG+TGG 0.570067 6:-18705867 MsG0680031349.01.T01:CDS
AGCCGGAGCAAAGGTCATCC+TGG 0.571711 6:-18709016 MsG0680031349.01.T01:CDS
CATACAATTCAGATTGGAGG+CGG 0.578134 6:-18708410 MsG0680031349.01.T01:intron
TCTTCTAGCATCTGGTGGAA+AGG 0.588936 6:-18705840 MsG0680031349.01.T01:intron
TTCTTGAAATGGCGAAAAGG+AGG 0.590119 6:-18706602 MsG0680031349.01.T01:CDS
GTGGATCTTCTAGCATCTGG+TGG 0.592765 6:-18705845 MsG0680031349.01.T01:CDS
GTTGTATGGGAATTTCTCAA+AGG 0.594111 6:-18707313 MsG0680031349.01.T01:CDS
TTTCAATCTAGTGAATTGGA+TGG 0.594154 6:-18710666 MsG0680031349.01.T01:exon
TTTACATGAAGCCGGAGCAA+AGG 0.603305 6:-18709025 MsG0680031349.01.T01:CDS
TGACGCAACTCAATCTCTTG+TGG 0.604729 6:-18706790 MsG0680031349.01.T01:CDS
GGTTTGTCCAATCACTGACC+AGG 0.610231 6:+18708998 None:intergenic
TCTTAGAGAATTTCCTAGGG+AGG 0.612761 6:-18709157 MsG0680031349.01.T01:CDS
ATACAAGAACCAACTCTCCA+GGG 0.618263 6:+18706192 None:intergenic
CCATCCAAAAGTCCTTGAGA+AGG 0.622630 6:+18708134 None:intergenic
GGTGCTCTATTGGCTATGCA+AGG 0.635323 6:-18710515 MsG0680031349.01.T01:intron
AAAGTTCTAGCATCAACTGT+CGG 0.655580 6:-18708644 MsG0680031349.01.T01:CDS
GCTATTTGGAAAAGTCGTCA+TGG 0.659882 6:-18709133 MsG0680031349.01.T01:CDS
ATTCTTGATGAACTAAGACA+AGG 0.693152 6:-18707433 MsG0680031349.01.T01:CDS
TATCAAGAGCCAAAACACCA+GGG 0.722460 6:+18707281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTATTTTTTAAGTTA+AGG - Chr6:18705216-18705235 MsG0680031349.01.T01:CDS 10.0%
!!! AATCAAAATGTAATAAATTT+TGG + Chr6:18710694-18710713 None:intergenic 10.0%
!!! AGATTTAATTAAATTTTGAA+GGG - Chr6:18707066-18707085 MsG0680031349.01.T01:intron 10.0%
!!! ATCAAAATGTAATAAATTTT+GGG + Chr6:18710693-18710712 None:intergenic 10.0%
!! AAAAAAACACTATATCTTTA+AGG + Chr6:18705193-18705212 None:intergenic 15.0%
!! AAAAATATAGATAAGTAAAG+AGG + Chr6:18710357-18710376 None:intergenic 15.0%
!! AAAATATAGATAAGTAAAGA+GGG + Chr6:18710356-18710375 None:intergenic 15.0%
!! AATAAAAAATTGTAAAATCG+AGG - Chr6:18711870-18711889 MsG0680031349.01.T01:five_prime_UTR 15.0%
!! ATAAATGAAGTTATTCTATT+TGG - Chr6:18708753-18708772 MsG0680031349.01.T01:CDS 15.0%
!! ATATAAACTATATTACCTTA+TGG + Chr6:18706610-18706629 None:intergenic 15.0%
!! ATCAAATACAGAAAATAATT+TGG - Chr6:18709326-18709345 MsG0680031349.01.T01:intron 15.0%
!! TGAAATAATTGTATACTATA+AGG + Chr6:18706884-18706903 None:intergenic 15.0%
!! TTATAGTATACAATTATTTC+AGG - Chr6:18706883-18706902 MsG0680031349.01.T01:intron 15.0%
!!! ATATTTTCATTTTAAGATCA+TGG - Chr6:18709250-18709269 MsG0680031349.01.T01:intron 15.0%
!!! GAGATTTAATTAAATTTTGA+AGG - Chr6:18707065-18707084 MsG0680031349.01.T01:intron 15.0%
!!! TAATTGATGTTATTTTTTAC+AGG - Chr6:18706545-18706564 MsG0680031349.01.T01:intron 15.0%
!!! TTTATGATATTTTACCTTTA+AGG - Chr6:18706963-18706982 MsG0680031349.01.T01:intron 15.0%
!!! TTTCTTGATTTATCTATTTT+AGG - Chr6:18710577-18710596 MsG0680031349.01.T01:CDS 15.0%
!! AAGGTAAAATATCATAAACA+AGG + Chr6:18706961-18706980 None:intergenic 20.0%
!! AATATCATAACATAAGATTG+TGG + Chr6:18706645-18706664 None:intergenic 20.0%
!! AATGATTTAGAAGATTAATC+GGG + Chr6:18711098-18711117 None:intergenic 20.0%
!! AGATAATCACTTGTTTAATA+TGG + Chr6:18707955-18707974 None:intergenic 20.0%
!! ATAATAAATGCGATAATACT+TGG - Chr6:18706690-18706709 MsG0680031349.01.T01:intron 20.0%
!! ATACAGAAAATAATTTGGAT+TGG - Chr6:18709331-18709350 MsG0680031349.01.T01:intron 20.0%
!! ATGATTTAGAAAACATCATT+CGG + Chr6:18711656-18711675 None:intergenic 20.0%
!! ATTAAATATTTACATGAAGC+CGG - Chr6:18707812-18707831 MsG0680031349.01.T01:intron 20.0%
!! ATTCAAAGAATAAAGTTAGA+TGG + Chr6:18709308-18709327 None:intergenic 20.0%
!! CAATGATTTAGAAGATTAAT+CGG + Chr6:18711099-18711118 None:intergenic 20.0%
!! GAACAGAAAGAATAAAAAAA+AGG + Chr6:18706511-18706530 None:intergenic 20.0%
!! GTCAAATTTCAGAAATATAA+TGG - Chr6:18706309-18706328 MsG0680031349.01.T01:intron 20.0%
!! GTTAATCACAATATTCAATT+TGG + Chr6:18705927-18705946 None:intergenic 20.0%
!! GTTTATCACAATTAATAAGT+AGG + Chr6:18710805-18710824 None:intergenic 20.0%
!! TACCTTACAAATTTATTTAC+AGG + Chr6:18708865-18708884 None:intergenic 20.0%
!! TATCAGTTATAGTTCAAATT+CGG - Chr6:18706018-18706037 MsG0680031349.01.T01:intron 20.0%
!! TATTATTTGAGCATCAATTT+AGG + Chr6:18707471-18707490 None:intergenic 20.0%
!! TATTTGTCAAATAGGTTATT+AGG + Chr6:18706074-18706093 None:intergenic 20.0%
!! TGAATTGTATGAGAAATAAA+CGG + Chr6:18708426-18708445 None:intergenic 20.0%
!! TGTTAGATTTACATTGATAA+TGG - Chr6:18707632-18707651 MsG0680031349.01.T01:intron 20.0%
!! TTTAATTAAATCTCAACACA+AGG + Chr6:18707059-18707078 None:intergenic 20.0%
!! TTTATTAGAATGAAAATGAG+AGG - Chr6:18706772-18706791 MsG0680031349.01.T01:intron 20.0%
!!! AATGATGTTTTCTAAATCAT+TGG - Chr6:18711656-18711675 MsG0680031349.01.T01:intron 20.0%
!!! AATTAAATTTTGAAGGGTTA+GGG - Chr6:18707072-18707091 MsG0680031349.01.T01:intron 20.0%
!!! ATGTTATTTTTTACAGGAAA+TGG - Chr6:18706551-18706570 MsG0680031349.01.T01:intron 20.0%
!!! ATTTTATGTTTAAGCAACTT+GGG + Chr6:18706267-18706286 None:intergenic 20.0%
!!! GTTAATGATGTTTAAAATCT+GGG + Chr6:18709047-18709066 None:intergenic 20.0%
!!! TAATTAAATTTTGAAGGGTT+AGG - Chr6:18707071-18707090 MsG0680031349.01.T01:intron 20.0%
!!! TATTGTATCCAAAAGATTTT+TGG - Chr6:18708649-18708668 MsG0680031349.01.T01:CDS 20.0%
!!! TATTTTATGTTTAAGCAACT+TGG + Chr6:18706268-18706287 None:intergenic 20.0%
!!! TTTTGGTTTAATAGTCATTT+TGG - Chr6:18706377-18706396 MsG0680031349.01.T01:intron 20.0%
! AAATATCAGTGTTCAAATTC+TGG + Chr6:18709213-18709232 None:intergenic 25.0%
! AACAGTTTGACATAAAGAAT+GGG - Chr6:18710433-18710452 MsG0680031349.01.T01:intron 25.0%
! ACAAGCTAAAAATAAACCAA+CGG + Chr6:18710390-18710409 None:intergenic 25.0%
! ATATTTCTTCCTATCCTTAA+AGG + Chr6:18706980-18706999 None:intergenic 25.0%
! ATCAATCAATCATGACAATT+TGG + Chr6:18705736-18705755 None:intergenic 25.0%
! ATCAGCAATATTTGTCAAAT+AGG + Chr6:18706082-18706101 None:intergenic 25.0%
! ATCTAGCATCTTAATATTTC+AGG + Chr6:18707300-18707319 None:intergenic 25.0%
! ATTTCTCATACAATTCAGAT+TGG - Chr6:18708429-18708448 MsG0680031349.01.T01:intron 25.0%
! ATTTCTGATAAGAATCCTAT+AGG + Chr6:18707982-18708001 None:intergenic 25.0%
! GACCTGTAAATAAATTTGTA+AGG - Chr6:18708860-18708879 MsG0680031349.01.T01:CDS 25.0%
! GATAGTTTATGCAAAATTCA+AGG + Chr6:18709853-18709872 None:intergenic 25.0%
! GATTAGACTTTAGTAATTGA+TGG + Chr6:18710883-18710902 None:intergenic 25.0%
! TAAAACTACGTGTATTATGT+AGG + Chr6:18704962-18704981 None:intergenic 25.0%
! TAGTATACAATTATTTCAGG+AGG - Chr6:18706886-18706905 MsG0680031349.01.T01:intron 25.0%
! TCAATAAACCTGAAAATAGA+TGG - Chr6:18710944-18710963 MsG0680031349.01.T01:intron 25.0%
! TCACAATATTCAATTTGGTT+CGG + Chr6:18705922-18705941 None:intergenic 25.0%
! TCTTCTTAAACATTTCATGT+TGG - Chr6:18706232-18706251 MsG0680031349.01.T01:CDS 25.0%
! TGAAACATTATTAACCATGT+GGG - Chr6:18707405-18707424 MsG0680031349.01.T01:CDS 25.0%
! TGAATCATTATCCAGAAATA+TGG + Chr6:18709616-18709635 None:intergenic 25.0%
! TTTAAAAAGTCGTCGAATTT+AGG - Chr6:18707442-18707461 MsG0680031349.01.T01:CDS 25.0%
! TTTCAAATAATGCATGCATT+AGG - Chr6:18708537-18708556 MsG0680031349.01.T01:intron 25.0%
!! AAATTCGACGACTTTTTAAA+TGG + Chr6:18707442-18707461 None:intergenic 25.0%
!! GGTTAATGATGTTTAAAATC+TGG + Chr6:18709048-18709067 None:intergenic 25.0%
!! GTCATGATTGATTGATAATT+CGG - Chr6:18705740-18705759 MsG0680031349.01.T01:intron 25.0%
!! TAAATTTTGCTGCAATGTAA+CGG - Chr6:18705458-18705477 MsG0680031349.01.T01:intron 25.0%
!! TATGAACAAACCGATATTTT+CGG - Chr6:18707241-18707260 MsG0680031349.01.T01:intron 25.0%
!! TTATTTTCTACGATCTCAAT+TGG - Chr6:18711299-18711318 MsG0680031349.01.T01:intron 25.0%
!! TTTTATGTTTAAGCAACTTG+GGG + Chr6:18706266-18706285 None:intergenic 25.0%
!!! AATCCTCTTAGAATTTTGAT+TGG + Chr6:18705883-18705902 None:intergenic 25.0%
!!! ACAATTTTTGAGATATTGCA+AGG - Chr6:18711524-18711543 MsG0680031349.01.T01:intron 25.0%
!!! ACTTTACTTATGTTGCTTTT+TGG - Chr6:18706360-18706379 MsG0680031349.01.T01:intron 25.0%
!!! CAATTTTTGAGATATTGCAA+GGG - Chr6:18711525-18711544 MsG0680031349.01.T01:intron 25.0%
!!! GATATTTTACCTTTAAGGAT+AGG - Chr6:18706968-18706987 MsG0680031349.01.T01:intron 25.0%
!!! TAATGTTGTTGCTTTCATAT+AGG - Chr6:18710456-18710475 MsG0680031349.01.T01:intron 25.0%
!!! TAGATTTACATTGATAATGG+AGG - Chr6:18707635-18707654 MsG0680031349.01.T01:intron 25.0%
!!! TTCTGAAATTTGACAACTTT+TGG + Chr6:18706303-18706322 None:intergenic 25.0%
!!! TTGCAAGAGTTTTAATCTTA+TGG - Chr6:18709978-18709997 MsG0680031349.01.T01:intron 25.0%
!!! TTTCAGGTTTATTGAAATCA+GGG + Chr6:18710939-18710958 None:intergenic 25.0%
!!! TTTCTTTTAAAACAGTCCTT+AGG - Chr6:18710167-18710186 MsG0680031349.01.T01:intron 25.0%
!!! TTTGCTGTATATTTTTGTTC+TGG - Chr6:18707588-18707607 MsG0680031349.01.T01:intron 25.0%
!!! TTTTAGTCTTTGTATCAAAG+CGG + Chr6:18707273-18707292 None:intergenic 25.0%
!!! TTTTCAGGTTTATTGAAATC+AGG + Chr6:18710940-18710959 None:intergenic 25.0%
AAACTCTTAGAGAATTTCCT+AGG - Chr6:18707684-18707703 MsG0680031349.01.T01:intron 30.0%
AAATACGTGGTTAATTAGGT+TGG - Chr6:18708958-18708977 MsG0680031349.01.T01:intron 30.0%
AAATATGCTTGAGAATGCTT+CGG - Chr6:18709510-18709529 MsG0680031349.01.T01:intron 30.0%
AACTCTTAGAGAATTTCCTA+GGG - Chr6:18707685-18707704 MsG0680031349.01.T01:intron 30.0%
AACTGCTTCAACCATTTAAA+TGG - Chr6:18709077-18709096 MsG0680031349.01.T01:CDS 30.0%
AACTGTGAAATAACTGTTGT+TGG - Chr6:18709436-18709455 MsG0680031349.01.T01:intron 30.0%
AACTTTATGAGAGTTTGAGA+AGG + Chr6:18708187-18708206 None:intergenic 30.0%
AAGAGATGTACCTTAGAATT+TGG + Chr6:18705043-18705062 None:intergenic 30.0%
AATACGTGGTTAATTAGGTT+GGG - Chr6:18708959-18708978 MsG0680031349.01.T01:intron 30.0%
AATACTATGAACATAGACAC+CGG + Chr6:18705271-18705290 None:intergenic 30.0%
ACTATTCTACTCCATATTTC+TGG - Chr6:18709602-18709621 MsG0680031349.01.T01:intron 30.0%
AGATTTGAACTTTCTTGGTT+TGG - Chr6:18710268-18710287 MsG0680031349.01.T01:CDS 30.0%
AGGAAAGATTTGAACTTTCT+TGG - Chr6:18710263-18710282 MsG0680031349.01.T01:CDS 30.0%
AGTAGGTTTGAATAAGTGAT+TGG + Chr6:18710788-18710807 None:intergenic 30.0%
AGTGATTATCTCTATCCTAT+AGG - Chr6:18707964-18707983 MsG0680031349.01.T01:intron 30.0%
ATAAGATTGTGGCACAAAAA+AGG + Chr6:18706634-18706653 None:intergenic 30.0%
ATACAAGTTATTCCACTTCA+AGG - Chr6:18708009-18708028 MsG0680031349.01.T01:CDS 30.0%
ATACCATATCTCATCTAATC+TGG + Chr6:18705780-18705799 None:intergenic 30.0%
ATGCATCATGTAAGGATATT+AGG - Chr6:18706820-18706839 MsG0680031349.01.T01:CDS 30.0%
ATTCAACCATTACAACCATT+TGG - Chr6:18705553-18705572 MsG0680031349.01.T01:intron 30.0%
ATTCTTGATGAACTAAGACA+AGG - Chr6:18709412-18709431 MsG0680031349.01.T01:intron 30.0%
ATTGGAGATAACTGAAGTTT+CGG - Chr6:18711674-18711693 MsG0680031349.01.T01:intron 30.0%
ATTTCGATGGCCAATTATTT+CGG - Chr6:18709918-18709937 MsG0680031349.01.T01:intron 30.0%
CAAATGTGTTCCAAATTCTA+AGG - Chr6:18705030-18705049 MsG0680031349.01.T01:three_prime_UTR 30.0%
CAAATTTATTTACAGGTCCA+AGG + Chr6:18708858-18708877 None:intergenic 30.0%
CAACAGTTTGACATAAAGAA+TGG - Chr6:18710432-18710451 MsG0680031349.01.T01:intron 30.0%
CTGAAACATTATTAACCATG+TGG - Chr6:18707404-18707423 MsG0680031349.01.T01:CDS 30.0%
CTTCATGTAACTAACTATCT+AGG - Chr6:18705067-18705086 MsG0680031349.01.T01:three_prime_UTR 30.0%
CTTTAGTAATTGATGGAGAA+AGG + Chr6:18710876-18710895 None:intergenic 30.0%
GAAACATTATTAACCATGTG+GGG - Chr6:18707406-18707425 MsG0680031349.01.T01:CDS 30.0%
GAAATATAATGGTGCTCTAT+TGG - Chr6:18706320-18706339 MsG0680031349.01.T01:intron 30.0%
GACTTTGACAACCATTTAAA+TGG + Chr6:18709091-18709110 None:intergenic 30.0%
GATCCAATCAAAATTCTAAG+AGG - Chr6:18705877-18705896 MsG0680031349.01.T01:CDS 30.0%
GCACAATTTACCGAAATAAT+TGG + Chr6:18709931-18709950 None:intergenic 30.0%
GTTAATAATGTTTCAGCACA+AGG + Chr6:18707400-18707419 None:intergenic 30.0%
GTTATAGCACTATAATGTAG+AGG - Chr6:18711260-18711279 MsG0680031349.01.T01:intron 30.0%
GTTCAAATACGTGGTTAATT+AGG - Chr6:18708954-18708973 MsG0680031349.01.T01:intron 30.0%
GTTCATGGATAATCTTCATA+AGG + Chr6:18706209-18706228 None:intergenic 30.0%
TACTCACATAACAGATACAT+TGG + Chr6:18705311-18705330 None:intergenic 30.0%
TCAATCATGACAATTTGGTA+TGG + Chr6:18705731-18705750 None:intergenic 30.0%
TCGCAGATATCGAAAAATAA+TGG + Chr6:18709813-18709832 None:intergenic 30.0%
TGAAAATGTCTTTATGAGTG+CGG - Chr6:18705799-18705818 MsG0680031349.01.T01:intron 30.0%
TGCTACATATGGTTTCTTAT+TGG + Chr6:18708307-18708326 None:intergenic 30.0%
TTAATTCATCAACCCTTTGA+TGG - Chr6:18711725-18711744 MsG0680031349.01.T01:intron 30.0%
TTAGATTCTCAACATTGATC+AGG - Chr6:18711455-18711474 MsG0680031349.01.T01:intron 30.0%
TTATCTAAATGCTTGTCTCA+TGG - Chr6:18706105-18706124 MsG0680031349.01.T01:intron 30.0%
TTGTACTAAACAACGTATCA+TGG + Chr6:18711212-18711231 None:intergenic 30.0%
TTTCAATCTAGTGAATTGGA+TGG - Chr6:18706179-18706198 MsG0680031349.01.T01:intron 30.0%
TTTCATCAAGCCAATTACTT+TGG + Chr6:18711572-18711591 None:intergenic 30.0%
! ACACTTTCTTTTCGTAAACA+AGG - Chr6:18707025-18707044 MsG0680031349.01.T01:intron 30.0%
! ATATTGTTGTTACTCTCACT+TGG - Chr6:18706996-18707015 MsG0680031349.01.T01:intron 30.0%
! ATTTTTCTTACGTTAACCGT+TGG - Chr6:18710371-18710390 MsG0680031349.01.T01:intron 30.0%
! CAAAATTCTAAGAGGATTGT+TGG - Chr6:18705885-18705904 MsG0680031349.01.T01:CDS 30.0%
! CTTCTTAGCTCAATTTTCAT+TGG - Chr6:18706153-18706172 MsG0680031349.01.T01:intron 30.0%
! CTTTGATCAACGAATTTTAC+TGG + Chr6:18709358-18709377 None:intergenic 30.0%
! GGAAAAACATGCAATTGTTT+TGG + Chr6:18708693-18708712 None:intergenic 30.0%
! GTACATGTTTTCGTTTATGT+TGG + Chr6:18706734-18706753 None:intergenic 30.0%
! GTGGAATAACTTGTATTTGA+AGG + Chr6:18708005-18708024 None:intergenic 30.0%
! TATGCATGATTCAACTTGTT+TGG + Chr6:18711774-18711793 None:intergenic 30.0%
! TCGATTTTTAACGTTGATCT+AGG - Chr6:18708817-18708836 MsG0680031349.01.T01:CDS 30.0%
! TCTCTAAGAGTTTGTATATG+AGG + Chr6:18707677-18707696 None:intergenic 30.0%
! TGAAATCTGATTGATTCTTC+TGG + Chr6:18707778-18707797 None:intergenic 30.0%
! TGTTTAAGAAGACTTGTTCA+TGG + Chr6:18706224-18706243 None:intergenic 30.0%
! TTATTCCAGTTGATTTCGAA+AGG + Chr6:18710026-18710045 None:intergenic 30.0%
! TTCCTTTTCACAAAGTCAAA+AGG - Chr6:18709280-18709299 MsG0680031349.01.T01:intron 30.0%
! TTGATTTTTGTCGTTCTCTT+CGG - Chr6:18710708-18710727 MsG0680031349.01.T01:intron 30.0%
! TTTTAACGTTGATCTAGGTT+GGG - Chr6:18708822-18708841 MsG0680031349.01.T01:CDS 30.0%
! TTTTTAACGTTGATCTAGGT+TGG - Chr6:18708821-18708840 MsG0680031349.01.T01:CDS 30.0%
!! CTATGTTTTCAAGATGAGTA+AGG + Chr6:18711066-18711085 None:intergenic 30.0%
!! TATTTTTCGATATCTGCGAT+TGG - Chr6:18709814-18709833 MsG0680031349.01.T01:intron 30.0%
!! TGGACTTTTTCTTCTTGAAA+TGG - Chr6:18710232-18710251 MsG0680031349.01.T01:intron 30.0%
!!! TATGTGGTTTTGAACTGAAT+AGG - Chr6:18705643-18705662 MsG0680031349.01.T01:intron 30.0%
!!! TTCCTTTTGACTTTGTGAAA+AGG + Chr6:18709285-18709304 None:intergenic 30.0%
!!! TTTTGACTTTGTGAAAAGGA+AGG + Chr6:18709281-18709300 None:intergenic 30.0%
AAACTTAACCGAACTGTTGA+TGG - Chr6:18705578-18705597 MsG0680031349.01.T01:intron 35.0%
AAAGTGTATCGCAGAAAGTA+TGG + Chr6:18709719-18709738 None:intergenic 35.0%
AAATCATTGCTCGTAGCATT+TGG - Chr6:18711110-18711129 MsG0680031349.01.T01:intron 35.0%
AACAATACAGTTCAAGCACA+AGG + Chr6:18709885-18709904 None:intergenic 35.0%
AACATCAACGTTGTCAATAG+CGG - Chr6:18709648-18709667 MsG0680031349.01.T01:intron 35.0%
AATCATTGCTCGTAGCATTT+GGG - Chr6:18711111-18711130 MsG0680031349.01.T01:intron 35.0%
AATCTGACCTAACTCCAAAT+GGG + Chr6:18711596-18711615 None:intergenic 35.0%
ACAATACAGTTCAAGCACAA+GGG + Chr6:18709884-18709903 None:intergenic 35.0%
ACATACTCTATCTGTCATCA+TGG - Chr6:18706844-18706863 MsG0680031349.01.T01:intron 35.0%
AGCTCAAAGTAATCCATCAA+AGG + Chr6:18711741-18711760 None:intergenic 35.0%
AGGATAAACCATCAACAGTT+CGG + Chr6:18705589-18705608 None:intergenic 35.0%
AGGCATACAATTGCTACATA+TGG + Chr6:18708318-18708337 None:intergenic 35.0%
AGTGTCTTACACATTCATTC+AGG - Chr6:18706466-18706485 MsG0680031349.01.T01:intron 35.0%
ATCTTTAATTGAAGCAGTGG+TGG - Chr6:18710981-18711000 MsG0680031349.01.T01:intron 35.0%
CATATCCTTTCGAAATCAAC+TGG - Chr6:18710018-18710037 MsG0680031349.01.T01:intron 35.0%
GAAAACATCATTCGGTACAT+AGG + Chr6:18711648-18711667 None:intergenic 35.0%
GAAAATGTCTTTATGAGTGC+GGG - Chr6:18705800-18705819 MsG0680031349.01.T01:intron 35.0%
GAACGAAAATGCATCATGTA+AGG - Chr6:18706812-18706831 MsG0680031349.01.T01:CDS 35.0%
GAATGAATGTGTAAGACACT+TGG + Chr6:18706466-18706485 None:intergenic 35.0%
GACAAGCTATCAGAGATTAA+AGG - Chr6:18708042-18708061 MsG0680031349.01.T01:intron 35.0%
GAGATCTTTAATTGAAGCAG+TGG - Chr6:18710978-18710997 MsG0680031349.01.T01:intron 35.0%
GATCAAAGTGAACACACAAA+TGG - Chr6:18709370-18709389 MsG0680031349.01.T01:intron 35.0%
GCAGTTTCAATCTAGTGAAT+TGG - Chr6:18706175-18706194 MsG0680031349.01.T01:intron 35.0%
GCTCAAAGTAATCCATCAAA+GGG + Chr6:18711740-18711759 None:intergenic 35.0%
GGTTTATTGAAATCAGGGTT+TGG + Chr6:18710934-18710953 None:intergenic 35.0%
GTCACATTTCTTAGCAACTT+AGG - Chr6:18706933-18706952 MsG0680031349.01.T01:intron 35.0%
GTGTCTTACACATTCATTCA+GGG - Chr6:18706467-18706486 MsG0680031349.01.T01:intron 35.0%
GTTATAGCACTATAACGTAG+CGG - Chr6:18707216-18707235 MsG0680031349.01.T01:intron 35.0%
GTTCCAGATTAGATGAGATA+TGG - Chr6:18705774-18705793 MsG0680031349.01.T01:intron 35.0%
GTTGAAGCAGTTCAAATTTG+TGG + Chr6:18709069-18709088 None:intergenic 35.0%
GTTGTATGGGAATTTCTCAA+AGG - Chr6:18709532-18709551 MsG0680031349.01.T01:intron 35.0%
GTTTCACCAAATGGTTGTAA+TGG + Chr6:18705562-18705581 None:intergenic 35.0%
TAAAACCCGTTTGTAAGATG+AGG + Chr6:18705843-18705862 None:intergenic 35.0%
TAATGCTATAACAGCAGAAG+AGG + Chr6:18708338-18708357 None:intergenic 35.0%
TAATTGGCCATCGAAATTTC+TGG + Chr6:18709915-18709934 None:intergenic 35.0%
TCAGTTCAAAACCACATAAC+CGG + Chr6:18705641-18705660 None:intergenic 35.0%
TCATACAAAAAGCCTTGAAG+TGG + Chr6:18708024-18708043 None:intergenic 35.0%
TCTATCGATATGAGAACTTG+AGG + Chr6:18708395-18708414 None:intergenic 35.0%
TCTCATACAATTCAGATTGG+AGG - Chr6:18708432-18708451 MsG0680031349.01.T01:intron 35.0%
TGAAAAGCTCAAATGTCAAG+AGG + Chr6:18710202-18710221 None:intergenic 35.0%
TGAATAAGTGATTGGTGCAA+TGG + Chr6:18710780-18710799 None:intergenic 35.0%
TGTCAACTCATTCAACCATA+AGG - Chr6:18706592-18706611 MsG0680031349.01.T01:CDS 35.0%
TTCGGAACTTTGCACAAAAT+CGG - Chr6:18707871-18707890 MsG0680031349.01.T01:intron 35.0%
TTCGGTTAAGTTTCACCAAA+TGG + Chr6:18705571-18705590 None:intergenic 35.0%
TTCTTCTTGAAATGGCGAAA+AGG - Chr6:18710240-18710259 MsG0680031349.01.T01:intron 35.0%
TTGTCAAATAGCAGCTATAG+TGG - Chr6:18711161-18711180 MsG0680031349.01.T01:intron 35.0%
! AAAGTTCTAGCATCAACTGT+CGG - Chr6:18708201-18708220 MsG0680031349.01.T01:CDS 35.0%
! ACATTTGAGCTTTTCATGAC+AGG - Chr6:18710206-18710225 MsG0680031349.01.T01:intron 35.0%
! AGCATTCTCCATCTATTTTC+AGG + Chr6:18710955-18710974 None:intergenic 35.0%
! ATGAAAACCCATTTGGAGTT+AGG - Chr6:18711586-18711605 MsG0680031349.01.T01:intron 35.0%
! ATTTGGAGTTAGGTCAGATT+GGG - Chr6:18711596-18711615 MsG0680031349.01.T01:intron 35.0%
! ATTTTGTGCAAAGTTCCGAA+GGG + Chr6:18707871-18707890 None:intergenic 35.0%
! CAATCTCTTGTGGTTGATAT+TGG - Chr6:18710065-18710084 MsG0680031349.01.T01:intron 35.0%
! CACAAATGGAGCATCTAAAT+TGG - Chr6:18709384-18709403 MsG0680031349.01.T01:intron 35.0%
! GTTGGTTCTTGTATCAATAC+AGG - Chr6:18710662-18710681 MsG0680031349.01.T01:exon 35.0%
! TATATAGTTCTGTAGCGTAG+CGG + Chr6:18705382-18705401 None:intergenic 35.0%
! TGGTTTGGAGATGAATGAAA+AGG - Chr6:18710283-18710302 MsG0680031349.01.T01:intron 35.0%
! TGTGATCGCAATCTTTTCTT+TGG - Chr6:18705113-18705132 MsG0680031349.01.T01:three_prime_UTR 35.0%
! TTATGGTAGTCGAATTTTGC+AGG - Chr6:18709995-18710014 MsG0680031349.01.T01:intron 35.0%
! TTCCTGCACCAAAAATCTTT+TGG + Chr6:18708660-18708679 None:intergenic 35.0%
! TTGCATGTTTTTCCTTCTCA+AGG - Chr6:18708699-18708718 MsG0680031349.01.T01:CDS 35.0%
! TTTTCCTTCTCAAGGACTTT+TGG - Chr6:18708707-18708726 MsG0680031349.01.T01:CDS 35.0%
!! CTTACAAACGGGTTTTATGA+GGG - Chr6:18705846-18705865 MsG0680031349.01.T01:CDS 35.0%
!! GATAATGGAGGAAAGTTGAA+TGG - Chr6:18707647-18707666 MsG0680031349.01.T01:intron 35.0%
!! TCTTACAAACGGGTTTTATG+AGG - Chr6:18705845-18705864 MsG0680031349.01.T01:CDS 35.0%
!! TGTTCTGGCTCTAAGTATTA+TGG - Chr6:18707603-18707622 MsG0680031349.01.T01:intron 35.0%
!! TTTTTAGCCTTCAGATGTCA+GGG - Chr6:18708489-18708508 MsG0680031349.01.T01:intron 35.0%
!!! AAAAACATGTTTTAGAGCGC+GGG - Chr6:18711619-18711638 MsG0680031349.01.T01:intron 35.0%
!!! ATCCAAAAGATTTTTGGTGC+AGG - Chr6:18708655-18708674 MsG0680031349.01.T01:CDS 35.0%
!!! CAATTGGCAATACTGGTTTT+CGG - Chr6:18711315-18711334 MsG0680031349.01.T01:intron 35.0%
!!! GAAAAACATGTTTTAGAGCG+CGG - Chr6:18711618-18711637 MsG0680031349.01.T01:intron 35.0%
!!! TGTCAGGGTTTTGTTTTTGT+TGG - Chr6:18708504-18708523 MsG0680031349.01.T01:intron 35.0%
AACAAAACCCTGACATCTGA+AGG + Chr6:18708499-18708518 None:intergenic 40.0%
AATACTGTTATGCGATAGCG+CGG + Chr6:18707138-18707157 None:intergenic 40.0%
ACCGAATTGGTATAAAGGCT+CGG - Chr6:18705611-18705630 MsG0680031349.01.T01:intron 40.0%
ACCGAGCCTTTATACCAATT+CGG + Chr6:18705615-18705634 None:intergenic 40.0%
ACGATCTCAATTGGCAATAC+TGG - Chr6:18711308-18711327 MsG0680031349.01.T01:intron 40.0%
AGCAAAAAAGGCTAGGAACA+AGG + Chr6:18710332-18710351 None:intergenic 40.0%
AGTAAAGAGGGCAGCAAAAA+AGG + Chr6:18710344-18710363 None:intergenic 40.0%
AGTTGCAGGTACATTCGTAA+GGG - Chr6:18707898-18707917 MsG0680031349.01.T01:intron 40.0%
ATAACGGCAAAATAGCCGTT+AGG - Chr6:18705482-18705501 MsG0680031349.01.T01:intron 40.0%
ATAAGTGATTGGTGCAATGG+TGG + Chr6:18710777-18710796 None:intergenic 40.0%
ATACAAGAACCAACTCTCCA+GGG + Chr6:18710656-18710675 None:intergenic 40.0%
ATAGCCGTTAGGATTGTTCA+TGG - Chr6:18705493-18705512 MsG0680031349.01.T01:intron 40.0%
ATCATTGCTCGTAGCATTTG+GGG - Chr6:18711112-18711131 MsG0680031349.01.T01:intron 40.0%
ATCGCAATGATCGTCGTTAT+CGG - Chr6:18707525-18707544 MsG0680031349.01.T01:intron 40.0%
CAAGAGGAACATGTAACCTA+AGG + Chr6:18710186-18710205 None:intergenic 40.0%
CAATACAGTTCAAGCACAAG+GGG + Chr6:18709883-18709902 None:intergenic 40.0%
CAATCTGACCTAACTCCAAA+TGG + Chr6:18711597-18711616 None:intergenic 40.0%
CATACAATTCAGATTGGAGG+CGG - Chr6:18708435-18708454 MsG0680031349.01.T01:intron 40.0%
CCTGAACCGAATTGGTATAA+AGG - Chr6:18705606-18705625 MsG0680031349.01.T01:intron 40.0%
CCTTTATACCAATTCGGTTC+AGG + Chr6:18705609-18705628 None:intergenic 40.0%
CGAACCATGAACAATCCTAA+CGG + Chr6:18705500-18705519 None:intergenic 40.0%
CGATATAAAATGCAGCGTAG+CGG - Chr6:18709775-18709794 MsG0680031349.01.T01:intron 40.0%
CGTTAGGATTGTTCATGGTT+CGG - Chr6:18705498-18705517 MsG0680031349.01.T01:intron 40.0%
CTATGTGTCTATATCGTGTC+CGG - Chr6:18705249-18705268 MsG0680031349.01.T01:CDS 40.0%
CTTGTGTCGCAGAATAATAG+TGG + Chr6:18707168-18707187 None:intergenic 40.0%
GAGCTTCACTAAATGCCTTA+CGG + Chr6:18708590-18708609 None:intergenic 40.0%
GCGGATATGACCGAAAATAT+CGG + Chr6:18707254-18707273 None:intergenic 40.0%
GCTATTTGGAAAAGTCGTCA+TGG - Chr6:18707712-18707731 MsG0680031349.01.T01:intron 40.0%
GCTGCAATGTAACGGTATAA+CGG - Chr6:18705466-18705485 MsG0680031349.01.T01:intron 40.0%
GTCGATGTGTTGTCAAATAG+TGG - Chr6:18709162-18709181 MsG0680031349.01.T01:CDS 40.0%
TAAACTGAACCAGACCAGTT+TGG + Chr6:18705992-18706011 None:intergenic 40.0%
TAAGCCACCAGAAATTTCGA+TGG - Chr6:18709905-18709924 MsG0680031349.01.T01:intron 40.0%
TATCAAGAGCCAAAACACCA+GGG + Chr6:18709567-18709586 None:intergenic 40.0%
TCAATCGTTTCTTCTTACCC+TGG - Chr6:18710636-18710655 MsG0680031349.01.T01:CDS 40.0%
TCCACCAAATCAATAGGAAC+CGG + Chr6:18708567-18708586 None:intergenic 40.0%
TCTGAAGGCTAAAAACCGAA+AGG + Chr6:18708484-18708503 None:intergenic 40.0%
TCTTAGAGAATTTCCTAGGG+AGG - Chr6:18707688-18707707 MsG0680031349.01.T01:intron 40.0%
TGAGAATGCTTCGGTTGTAT+GGG - Chr6:18709519-18709538 MsG0680031349.01.T01:intron 40.0%
TGGCTTGATGAAAACCCATT+TGG - Chr6:18711579-18711598 MsG0680031349.01.T01:intron 40.0%
TGGTTTATCCTGAACCGAAT+TGG - Chr6:18705598-18705617 MsG0680031349.01.T01:intron 40.0%
TTACGGTCCACCAAATCAAT+AGG + Chr6:18708573-18708592 None:intergenic 40.0%
TTCTTGAAATGGCGAAAAGG+AGG - Chr6:18710243-18710262 MsG0680031349.01.T01:intron 40.0%
TTGAGAATGCTTCGGTTGTA+TGG - Chr6:18709518-18709537 MsG0680031349.01.T01:intron 40.0%
TTTGAAGGGTTAGGGTGATA+AGG - Chr6:18707080-18707099 MsG0680031349.01.T01:intron 40.0%
! AACTGGTCTGGTTCAGTTTA+TGG - Chr6:18705992-18706011 MsG0680031349.01.T01:intron 40.0%
! AATGCATGCATTAGGAGTAC+CGG - Chr6:18708545-18708564 MsG0680031349.01.T01:CDS 40.0%
! ATGATGTGCGGAAAAAGCAT+AGG - Chr6:18707366-18707385 MsG0680031349.01.T01:CDS 40.0%
! CATTTGGAGTTAGGTCAGAT+TGG - Chr6:18711595-18711614 MsG0680031349.01.T01:intron 40.0%
! CTTGTGGTTGATATTGGAAG+TGG - Chr6:18710071-18710090 MsG0680031349.01.T01:intron 40.0%
! GATTTTGTGCAAAGTTCCGA+AGG + Chr6:18707872-18707891 None:intergenic 40.0%
! GGTCTTTTTGCAATCTGATG+TGG - Chr6:18711476-18711495 MsG0680031349.01.T01:intron 40.0%
! TTGCAAGGGTAAGCTTGTTT+CGG - Chr6:18711539-18711558 MsG0680031349.01.T01:intron 40.0%
!! AGTACCGGTTCCTATTGATT+TGG - Chr6:18708560-18708579 MsG0680031349.01.T01:CDS 40.0%
!! TATTGATTTGGTGGACCGTA+AGG - Chr6:18708572-18708591 MsG0680031349.01.T01:CDS 40.0%
!!! AAAACATGTTTTAGAGCGCG+GGG - Chr6:18711620-18711639 MsG0680031349.01.T01:intron 40.0%
!!! GTTTTTAGCCTTCAGATGTC+AGG - Chr6:18708488-18708507 MsG0680031349.01.T01:intron 40.0%
AAAAAGGCTAGGAACAAGGC+AGG + Chr6:18710328-18710347 None:intergenic 45.0%
AATGGTGGCAGTGACATCAA+CGG + Chr6:18710762-18710781 None:intergenic 45.0%
ACAAAATCGGTTGCAGTTGC+AGG - Chr6:18707884-18707903 MsG0680031349.01.T01:intron 45.0%
ACAGGAAATGGAGAGTTAGC+AGG - Chr6:18706563-18706582 MsG0680031349.01.T01:CDS 45.0%
ATATCTGCGATTGGCAATGC+TGG - Chr6:18709823-18709842 MsG0680031349.01.T01:intron 45.0%
ATCGTTAGACCGAATCACAC+CGG - Chr6:18705965-18705984 MsG0680031349.01.T01:intron 45.0%
CACATCATGCCTAAGTCCAA+AGG + Chr6:18707354-18707373 None:intergenic 45.0%
CAGAGAAAGCAGCTTCCTTT+CGG - Chr6:18708466-18708485 MsG0680031349.01.T01:intron 45.0%
CAGTGATTGGACAAACCCTT+CGG - Chr6:18707853-18707872 MsG0680031349.01.T01:intron 45.0%
CAGTTGCAGGTACATTCGTA+AGG - Chr6:18707897-18707916 MsG0680031349.01.T01:intron 45.0%
CATCAACGGAGACGTATACA+TGG + Chr6:18710748-18710767 None:intergenic 45.0%
CCATCCAAAAGTCCTTGAGA+AGG + Chr6:18708714-18708733 None:intergenic 45.0%
CCTCGTCCTCATCTTACAAA+CGG - Chr6:18705834-18705853 MsG0680031349.01.T01:intron 45.0%
CGGAGAATGGCCAAAGTAAT+TGG - Chr6:18711559-18711578 MsG0680031349.01.T01:intron 45.0%
CGTATACATGGCAGCACTAA+TGG + Chr6:18710736-18710755 None:intergenic 45.0%
CTATCAAGAGCCAAAACACC+AGG + Chr6:18709568-18709587 None:intergenic 45.0%
CTCGTCCTCATCTTACAAAC+GGG - Chr6:18705835-18705854 MsG0680031349.01.T01:intron 45.0%
GACTGCGCAATACACATTCA+AGG + Chr6:18706404-18706423 None:intergenic 45.0%
GATACAAGAACCAACTCTCC+AGG + Chr6:18710657-18710676 None:intergenic 45.0%
GGCAGGTGATGTAACAAGTA+TGG + Chr6:18710311-18710330 None:intergenic 45.0%
GGTGATAAGGATGTAACTCC+TGG - Chr6:18707093-18707112 MsG0680031349.01.T01:intron 45.0%
TATTTGACAACACTGAGGCC+AGG + Chr6:18707114-18707133 None:intergenic 45.0%
TCTTCTAGCATCTGGTGGAA+AGG - Chr6:18711005-18711024 MsG0680031349.01.T01:intron 45.0%
TGACGCAACTCAATCTCTTG+TGG - Chr6:18710055-18710074 MsG0680031349.01.T01:intron 45.0%
TGCTTGTCTCATGGAGTGAA+TGG - Chr6:18706114-18706133 MsG0680031349.01.T01:intron 45.0%
TTCTGCTATGCTTGTCTAGC+TGG - Chr6:18708234-18708253 MsG0680031349.01.T01:CDS 45.0%
TTCTTCTTACCCTGGAGAGT+TGG - Chr6:18710644-18710663 MsG0680031349.01.T01:CDS 45.0%
TTGGACTTAGGCATGATGTG+CGG - Chr6:18707354-18707373 MsG0680031349.01.T01:CDS 45.0%
TTTACAGGTCCAAGGTCAAC+AGG + Chr6:18708850-18708869 None:intergenic 45.0%
TTTACATGAAGCCGGAGCAA+AGG - Chr6:18707820-18707839 MsG0680031349.01.T01:intron 45.0%
TTTCCAAATAGCTCCTCCCT+AGG + Chr6:18707704-18707723 None:intergenic 45.0%
TTTCCTAGGGAGGAGCTATT+TGG - Chr6:18707698-18707717 MsG0680031349.01.T01:intron 45.0%
! AAGAAAGCTCCCTGGTGTTT+TGG - Chr6:18709555-18709574 MsG0680031349.01.T01:intron 45.0%
! CCTTCTCAAGGACTTTTGGA+TGG - Chr6:18708711-18708730 MsG0680031349.01.T01:CDS 45.0%
! GAGCTTTTCATGACAGGCAA+TGG - Chr6:18710212-18710231 MsG0680031349.01.T01:intron 45.0%
! GGTAAGCTTGTTTCGGAGAA+TGG - Chr6:18711546-18711565 MsG0680031349.01.T01:intron 45.0%
! TTGGCCATCGAAATTTCTGG+TGG + Chr6:18709912-18709931 None:intergenic 45.0%
!! ACCGGTTCCTATTGATTTGG+TGG - Chr6:18708563-18708582 MsG0680031349.01.T01:CDS 45.0%
!! GATTGTTCATGGTTCGGTTC+AGG - Chr6:18705504-18705523 MsG0680031349.01.T01:intron 45.0%
!!! TTAGCTTGTTTTGCGCTGTC+TGG - Chr6:18710401-18710420 MsG0680031349.01.T01:intron 45.0%
AACACACACCCTTGTCTGCA+AGG - Chr6:18707328-18707347 MsG0680031349.01.T01:CDS 50.0%
AGAGGGCAGCAAAAAAGGCT+AGG + Chr6:18710339-18710358 None:intergenic 50.0%
AGGTCATCCTGGTCAGTGAT+TGG - Chr6:18707840-18707859 MsG0680031349.01.T01:intron 50.0%
CAGTTTGGTCCGGTGTGATT+CGG + Chr6:18705977-18705996 None:intergenic 50.0%
CCGTTTGTAAGATGAGGACG+AGG + Chr6:18705837-18705856 None:intergenic 50.0%
CTCAAAGGAAGAAAGCTCCC+TGG - Chr6:18709547-18709566 MsG0680031349.01.T01:intron 50.0%
GCGGCTATTTGACAACACTG+AGG + Chr6:18707119-18707138 None:intergenic 50.0%
GGTTTGTCCAATCACTGACC+AGG + Chr6:18707850-18707869 None:intergenic 50.0%
GTGGATCTTCTAGCATCTGG+TGG - Chr6:18711000-18711019 MsG0680031349.01.T01:intron 50.0%
TCCAAAGGCCTTGCAGACAA+GGG + Chr6:18707339-18707358 None:intergenic 50.0%
TCTGCAAGGCCTTTGGACTT+AGG - Chr6:18707342-18707361 MsG0680031349.01.T01:CDS 50.0%
TGAACCAGACCAGTTTGGTC+CGG + Chr6:18705987-18706006 None:intergenic 50.0%
TGGATAACGCAATCCCCACA+TGG + Chr6:18707422-18707441 None:intergenic 50.0%
! GGTGCTCTATTGGCTATGCA+AGG - Chr6:18706330-18706349 MsG0680031349.01.T01:intron 50.0%
! TGCAGACAAGGGTGTGTGTT+AGG + Chr6:18707328-18707347 None:intergenic 50.0%
!! GTGGTGGATCTTCTAGCATC+TGG - Chr6:18710997-18711016 MsG0680031349.01.T01:intron 50.0%
!! GTTCATGGTTCGGTTCAGGA+AGG - Chr6:18705508-18705527 MsG0680031349.01.T01:intron 50.0%
ACCCTTGTCTGCAAGGCCTT+TGG - Chr6:18707335-18707354 MsG0680031349.01.T01:CDS 55.0%
CGAATCACACCGGACCAAAC+TGG - Chr6:18705975-18705994 MsG0680031349.01.T01:intron 55.0%
GACCAGGATGACCTTTGCTC+CGG + Chr6:18707834-18707853 None:intergenic 55.0%
GTCCAAAGGCCTTGCAGACA+AGG + Chr6:18707340-18707359 None:intergenic 55.0%
!! GGTATAAAGGCTCGGTGCAC+CGG - Chr6:18705619-18705638 MsG0680031349.01.T01:intron 55.0%
AGCCGGAGCAAAGGTCATCC+TGG - Chr6:18707829-18707848 MsG0680031349.01.T01:intron 60.0%
CACACCGGACCAAACTGGTC+TGG - Chr6:18705980-18705999 MsG0680031349.01.T01:intron 60.0%
GGTTGGGTGCCTGTTGACCT+TGG - Chr6:18708838-18708857 MsG0680031349.01.T01:CDS 60.0%
!! GGCTCGGTGCACCGGTTATG+TGG - Chr6:18705627-18705646 MsG0680031349.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 18704948 18711919 18704948 ID=MsG0680031349.01;Name=MsG0680031349.01
Chr6 mRNA 18704948 18711919 18704948 ID=MsG0680031349.01.T01;Parent=MsG0680031349.01;Name=MsG0680031349.01.T01;_AED=0.48;_eAED=0.48;_QI=123|0.92|0.92|1|0.84|0.78|14|191|675
Chr6 exon 18704948 18705390 18704948 ID=MsG0680031349.01.T01:exon:12512;Parent=MsG0680031349.01.T01
Chr6 exon 18705841 18705939 18705841 ID=MsG0680031349.01.T01:exon:12511;Parent=MsG0680031349.01.T01
Chr6 exon 18706184 18706268 18706184 ID=MsG0680031349.01.T01:exon:12510;Parent=MsG0680031349.01.T01
Chr6 exon 18706413 18706462 18706413 ID=MsG0680031349.01.T01:exon:12509;Parent=MsG0680031349.01.T01
Chr6 exon 18706563 18706639 18706563 ID=MsG0680031349.01.T01:exon:12508;Parent=MsG0680031349.01.T01
Chr6 exon 18706775 18706850 18706775 ID=MsG0680031349.01.T01:exon:12507;Parent=MsG0680031349.01.T01
Chr6 exon 18707279 18707530 18707279 ID=MsG0680031349.01.T01:exon:12506;Parent=MsG0680031349.01.T01
Chr6 exon 18707991 18708028 18707991 ID=MsG0680031349.01.T01:exon:12505;Parent=MsG0680031349.01.T01
Chr6 exon 18708135 18708420 18708135 ID=MsG0680031349.01.T01:exon:12504;Parent=MsG0680031349.01.T01
Chr6 exon 18708538 18708881 18708538 ID=MsG0680031349.01.T01:exon:12503;Parent=MsG0680031349.01.T01
Chr6 exon 18708962 18709229 18708962 ID=MsG0680031349.01.T01:exon:12502;Parent=MsG0680031349.01.T01
Chr6 exon 18710254 18710300 18710254 ID=MsG0680031349.01.T01:exon:12501;Parent=MsG0680031349.01.T01
Chr6 exon 18710516 18710688 18710516 ID=MsG0680031349.01.T01:exon:12500;Parent=MsG0680031349.01.T01
Chr6 exon 18711816 18711919 18711816 ID=MsG0680031349.01.T01:exon:12499;Parent=MsG0680031349.01.T01
Chr6 five_prime_UTR 18711816 18711919 18711816 ID=MsG0680031349.01.T01:five_prime_utr;Parent=MsG0680031349.01.T01
Chr6 five_prime_UTR 18710670 18710688 18710670 ID=MsG0680031349.01.T01:five_prime_utr;Parent=MsG0680031349.01.T01
Chr6 CDS 18710516 18710669 18710516 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18710254 18710300 18710254 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18708962 18709229 18708962 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18708538 18708881 18708538 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18708135 18708420 18708135 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18707991 18708028 18707991 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18707279 18707530 18707279 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18706775 18706850 18706775 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18706563 18706639 18706563 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18706413 18706462 18706413 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18706184 18706268 18706184 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18705841 18705939 18705841 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 CDS 18705139 18705390 18705139 ID=MsG0680031349.01.T01:cds;Parent=MsG0680031349.01.T01
Chr6 three_prime_UTR 18704948 18705138 18704948 ID=MsG0680031349.01.T01:three_prime_utr;Parent=MsG0680031349.01.T01
Gene Sequence

>MsG0680031349.01.T01

ATGGCTCACCTTATGAAGATTATCCATGAACAAGTCTTCTTAAACATTTCATGTTGGTATGACAGCCCCAAGTTGCTTAAACATAAAATATGTTCTTATGTTCCAAAAGTTGTCAAATTTCAGAAATATAATGGTGCTCTATTGGCTATGCAAGGAAATGGAGAGTTAGCAGGTCATGTTGTCAACTCATTCAACCATAAGATTTACATTGATAATGGAGGAAAGTTGAATGGTATTCCTCATATACAAACTCTTAGAGAATTTCCTAGGGAGGAGCTATTTGGAAAAGTCGTCATGGTTCGATTTGATTCTAACATATTGCTCAAGCAAGAGTGTAACCAGAAGAATCAATCAGATTTCAATGCACTGTTAACAATTAAATATTTACATGAAGCCGGAGCAAAGGTCATCCTGGTCAGTGATTGGACAAACCCTTCGGAACTTTGCACAAAATCGGTTGCAGTTGCAGGATTCTTATCAGAAATCCTTCAAATACAAGTTATTCCACTTCAAGGCTTTTTGTATGACAAGCTATCAGAGATTAAAGGCTTCGAGAAAGAGAATATCTATCTTCTTGAGAATCTTTATAATATCAAAGACGAAGTTGCTAACTGTTTGAAGTATGCTAGAGAATTATCTTCAGAAGTTGATATCTTTGTCAACGACTCCTTCTCAAACTCTCATAAAGTTCTAGCATCAACTGTCGGCGTTACTCGTTTCTGCTATGCTTGTCTAGCTGGTTTTCATTTCGAAGAGAAGCTTCATCTCGTGAAGAATTTAGCAGAAGCCAATAAGAAACCATATGTAGCAATTATTGGAGGCGGTAATCTCGCAGAGAAAGCAGCTTCCTTTCGGTTTTTAGCCTTCAGATGTCAGGGTTTTGTTTTTGTTGGAATGATGTCATTTCAAATAATGCATGCATTAGGAGTACCGGTTCCTATTGATTTGGTGGACCGTAAGGCATTTAGTGAAGCTCAAGATATTGTGAAACTTGCTCGTGATAACAACGTTACAATATTGTATCCAAAAGATTTTTGGTGCAGGAATCAAATTGATCCAAAACAATTGCATGTTTTTCCTTCTCAAGGACTTTTGGATGGTTGGGTGCCTGTTGACCTTGGACCTGTAAATAAATTTAAAATAATTTGGATTGGTCCAGTAAAATTCGTTGATCAAAGTGAACACACAAATGGAGCATCTAAATTGGCAAAAATTCTTGATGAACTAAGACAAGGAAACTGTGAAATAACTGTTGTTGGTACTACAGCATGCAAGCTTGTGAGACAAGAAACAAGTTCATTGTCTTCTATAAATATGCTTGAGAATGCTTCGGTTGTATGGGAATTTCTCAAAGGAAGAAAGCTCCCTGGTGTTTTGGCTCTTGATAGAGCATATCCTTTCGAAATCAACTGGAATAATGTTTACTCTGACGCAACTCAATCTCTTGTGGTTGATATTGGAAGTGGCAATGGACTTTTTCTTCTTGAAATGGCGAAAAGGAGGAAAGATTTGAACTTTCTTGGTTTGGAGATGAATGAAAAGCTTGTTTTGCGCTGTCTGGATTCTGTTCAACAGTTTGACATAAAGAATGGGCACTTCATTGCTACTAATGCAACATCAACATTTCGTTCAATCGTTTCTTCTTACCCTGGAGAGTTGGTTCTTGTATCAATACAGTGTCCAAACCCTGATTTCAATAAACCTGAAAATAGATGGAGAATGCTGCAGAGATCTTTAATTGAAGCAGTGGTGGATCTTCTAGCATCTGGTGGAAAGGTCTTTTTGCAATCTGATGTGGAAGAAGTAGCAATAAGAATGAAAGAACAATTTTTGAGATATTGCAAGGGTAAGCTTGTTTCGGAGAATGGCCAAAGTAATTGGCTTGATGAAAACCCATTTGGAGTTAGGTCAGATTGGGAAAAACATGTTTTAGAGCGCGGGGCGCCTATGTACCGAATGATGTTTTCTAAATCATTGGAGATAACTGAAGTTTCGGTTTCAAATGATGTAATTCAAAAAGTTTGTTAA

Protein sequence

>MsG0680031349.01.T01

MAHLMKIIHEQVFLNISCWYDSPKLLKHKICSYVPKVVKFQKYNGALLAMQGNGELAGHVVNSFNHKIYIDNGGKLNGIPHIQTLREFPREELFGKVVMVRFDSNILLKQECNQKNQSDFNALLTIKYLHEAGAKVILVSDWTNPSELCTKSVAVAGFLSEILQIQVIPLQGFLYDKLSEIKGFEKENIYLLENLYNIKDEVANCLKYARELSSEVDIFVNDSFSNSHKVLASTVGVTRFCYACLAGFHFEEKLHLVKNLAEANKKPYVAIIGGGNLAEKAASFRFLAFRCQGFVFVGMMSFQIMHALGVPVPIDLVDRKAFSEAQDIVKLARDNNVTILYPKDFWCRNQIDPKQLHVFPSQGLLDGWVPVDLGPVNKFKIIWIGPVKFVDQSEHTNGASKLAKILDELRQGNCEITVVGTTACKLVRQETSSLSSINMLENASVVWEFLKGRKLPGVLALDRAYPFEINWNNVYSDATQSLVVDIGSGNGLFLLEMAKRRKDLNFLGLEMNEKLVLRCLDSVQQFDIKNGHFIATNATSTFRSIVSSYPGELVLVSIQCPNPDFNKPENRWRMLQRSLIEAVVDLLASGGKVFLQSDVEEVAIRMKEQFLRYCKGKLVSENGQSNWLDENPFGVRSDWEKHVLERGAPMYRMMFSKSLEITEVSVSNDVIQKVC*