Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017420 | Msa0986560 | 0.800411 | 1.459311e-48 | -8.615850e-47 |
| Msa0020320 | Msa0986560 | 0.802173 | 6.360870e-49 | -8.615850e-47 |
| Msa0026930 | Msa0986560 | 0.802710 | 4.930553e-49 | -8.615850e-47 |
| Msa0032450 | Msa0986560 | 0.812954 | 3.268942e-51 | -8.615850e-47 |
| Msa0034100 | Msa0986560 | 0.801605 | 8.322913e-49 | -8.615850e-47 |
| Msa0041780 | Msa0986560 | 0.800023 | 1.750532e-48 | -8.615850e-47 |
| Msa0043120 | Msa0986560 | -0.808142 | 3.581237e-50 | -8.615850e-47 |
| Msa0043150 | Msa0986560 | -0.814546 | 1.458364e-51 | -8.615850e-47 |
| Msa0050320 | Msa0986560 | 0.818535 | 1.863110e-52 | -8.615850e-47 |
| Msa0054760 | Msa0986560 | 0.808788 | 2.606848e-50 | -8.615850e-47 |
| Msa0059880 | Msa0986560 | -0.807657 | 4.541899e-50 | -8.615850e-47 |
| Msa0104390 | Msa0986560 | 0.800384 | 1.478092e-48 | -8.615850e-47 |
| Msa0114700 | Msa0986560 | 0.809303 | 2.023111e-50 | -8.615850e-47 |
| Msa0117300 | Msa0986560 | 0.808912 | 2.452472e-50 | -8.615850e-47 |
| Msa0623360 | Msa0986560 | 0.813665 | 2.281122e-51 | -8.615850e-47 |
| Msa0633720 | Msa0986560 | 0.806252 | 9.003715e-50 | -8.615850e-47 |
| Msa0634290 | Msa0986560 | -0.800039 | 1.737289e-48 | -8.615850e-47 |
| Msa0638040 | Msa0986560 | 0.806222 | 9.133123e-50 | -8.615850e-47 |
| Msa0643840 | Msa0986560 | -0.802199 | 6.282391e-49 | -8.615850e-47 |
| Msa0665040 | Msa0986560 | 0.812094 | 5.038856e-51 | -8.615850e-47 |
| Msa0670360 | Msa0986560 | -0.821639 | 3.627345e-53 | -8.615850e-47 |
| Msa0679780 | Msa0986560 | 0.815832 | 7.553941e-52 | -8.615850e-47 |
| Msa0701460 | Msa0986560 | 0.801793 | 7.615252e-49 | -8.615850e-47 |
| Msa0701530 | Msa0986560 | 0.802638 | 5.100815e-49 | -8.615850e-47 |
| Msa0702200 | Msa0986560 | 0.802189 | 6.313750e-49 | -8.615850e-47 |
| Msa0702310 | Msa0986560 | 0.809295 | 2.031053e-50 | -8.615850e-47 |
| Msa0702620 | Msa0986560 | 0.814664 | 1.373249e-51 | -8.615850e-47 |
| Msa0705050 | Msa0986560 | 0.834707 | 2.564953e-56 | -8.615850e-47 |
| Msa0705130 | Msa0986560 | 0.801293 | 9.641779e-49 | -8.615850e-47 |
| Msa0705810 | Msa0986560 | 0.806465 | 8.119846e-50 | -8.615850e-47 |
| Msa0734760 | Msa0986560 | 0.801688 | 8.000830e-49 | -8.615850e-47 |
| Msa0748050 | Msa0986560 | 0.804299 | 2.309611e-49 | -8.615850e-47 |
| Msa0751960 | Msa0986560 | -0.812366 | 4.396737e-51 | -8.615850e-47 |
| Msa0756440 | Msa0986560 | 0.807760 | 4.319221e-50 | -8.615850e-47 |
| Msa0768670 | Msa0986560 | -0.805017 | 1.635282e-49 | -8.615850e-47 |
| Msa0775420 | Msa0986560 | 0.812745 | 3.632712e-51 | -8.615850e-47 |
| Msa0778580 | Msa0986560 | 0.803987 | 2.681124e-49 | -8.615850e-47 |
| Msa0787860 | Msa0986560 | -0.802176 | 6.351754e-49 | -8.615850e-47 |
| Msa0791430 | Msa0986560 | 0.801991 | 6.933880e-49 | -8.615850e-47 |
| Msa0812800 | Msa0986560 | 0.808763 | 2.640070e-50 | -8.615850e-47 |
| Msa0813630 | Msa0986560 | 0.834176 | 3.487110e-56 | -8.615850e-47 |
| Msa0815950 | Msa0986560 | 0.814069 | 1.858449e-51 | -8.615850e-47 |
| Msa0824850 | Msa0986560 | -0.805427 | 1.342050e-49 | -8.615850e-47 |
| Msa0824860 | Msa0986560 | -0.804028 | 2.629383e-49 | -8.615850e-47 |
| Msa0831890 | Msa0986560 | -0.801437 | 9.009107e-49 | -8.615850e-47 |
| Msa0833910 | Msa0986560 | 0.816295 | 5.951295e-52 | -8.615850e-47 |
| Msa0834160 | Msa0986560 | 0.801021 | 1.096003e-48 | -8.615850e-47 |
| Msa0835550 | Msa0986560 | 0.825831 | 3.783136e-54 | -8.615850e-47 |
| Msa0121460 | Msa0986560 | 0.813266 | 2.792602e-51 | -8.615850e-47 |
| Msa0132080 | Msa0986560 | 0.812332 | 4.472440e-51 | -8.615850e-47 |
| Msa0132920 | Msa0986560 | 0.825143 | 5.505393e-54 | -8.615850e-47 |
| Msa0136580 | Msa0986560 | 0.800591 | 1.341346e-48 | -8.615850e-47 |
| Msa0150910 | Msa0986560 | -0.800592 | 1.340546e-48 | -8.615850e-47 |
| Msa0151210 | Msa0986560 | 0.803960 | 2.715835e-49 | -8.615850e-47 |
| Msa0154720 | Msa0986560 | 0.817363 | 3.427573e-52 | -8.615850e-47 |
| Msa0160650 | Msa0986560 | 0.803489 | 3.402025e-49 | -8.615850e-47 |
| Msa0163960 | Msa0986560 | 0.813534 | 2.438737e-51 | -8.615850e-47 |
| Msa0183200 | Msa0986560 | 0.802780 | 4.769393e-49 | -8.615850e-47 |
| Msa0188500 | Msa0986560 | 0.812146 | 4.909520e-51 | -8.615850e-47 |
| Msa0190670 | Msa0986560 | -0.819039 | 1.431565e-52 | -8.615850e-47 |
| Msa0196260 | Msa0986560 | -0.802921 | 4.459743e-49 | -8.615850e-47 |
| Msa0212550 | Msa0986560 | -0.802549 | 5.322266e-49 | -8.615850e-47 |
| Msa0223190 | Msa0986560 | 0.820948 | 5.236551e-53 | -8.615850e-47 |
| Msa0374040 | Msa0986560 | -0.805898 | 1.068733e-49 | -8.615850e-47 |
| Msa0378670 | Msa0986560 | 0.800231 | 1.587874e-48 | -8.615850e-47 |
| Msa0379500 | Msa0986560 | 0.811297 | 7.512838e-51 | -8.615850e-47 |
| Msa0384150 | Msa0986560 | 0.800153 | 1.647501e-48 | -8.615850e-47 |
| Msa0393140 | Msa0986560 | 0.804386 | 2.215188e-49 | -8.615850e-47 |
| Msa0403720 | Msa0986560 | 0.800578 | 1.349327e-48 | -8.615850e-47 |
| Msa0404180 | Msa0986560 | 0.824453 | 8.004413e-54 | -8.615850e-47 |
| Msa0408160 | Msa0986560 | 0.817398 | 3.366737e-52 | -8.615850e-47 |
| Msa0414480 | Msa0986560 | -0.811705 | 6.125675e-51 | -8.615850e-47 |
| Msa0421390 | Msa0986560 | 0.812277 | 4.596350e-51 | -8.615850e-47 |
| Msa0428330 | Msa0986560 | 0.833864 | 4.174306e-56 | -8.615850e-47 |
| Msa0431940 | Msa0986560 | 0.803088 | 4.119249e-49 | -8.615850e-47 |
| Msa0434820 | Msa0986560 | 0.814002 | 1.923478e-51 | -8.615850e-47 |
| Msa0478730 | Msa0986560 | 0.821178 | 4.635827e-53 | -8.615850e-47 |
| Msa0481050 | Msa0986560 | 0.803698 | 3.079632e-49 | -8.615850e-47 |
| Msa0984820 | Msa0986560 | 0.800730 | 1.256342e-48 | -8.615850e-47 |
| Msa0986560 | Msa0986620 | 0.816587 | 5.121026e-52 | -8.615850e-47 |
| Msa0986560 | Msa0993450 | -0.800068 | 1.714318e-48 | -8.615850e-47 |
| Msa0986560 | Msa0996980 | -0.804189 | 2.434052e-49 | -8.615850e-47 |
| Msa0986560 | Msa0999590 | 0.802756 | 4.824079e-49 | -8.615850e-47 |
| Msa0986560 | Msa1006170 | -0.829062 | 6.352098e-55 | -8.615850e-47 |
| Msa0986560 | Msa1014120 | 0.814150 | 1.783721e-51 | -8.615850e-47 |
| Msa0986560 | Msa1024350 | -0.802409 | 5.689115e-49 | -8.615850e-47 |
| Msa0986560 | Msa1031530 | 0.812590 | 3.927607e-51 | -8.615850e-47 |
| Msa0986560 | Msa1036020 | -0.806102 | 9.680994e-50 | -8.615850e-47 |
| Msa0986560 | Msa1043020 | 0.817655 | 2.946637e-52 | -8.615850e-47 |
| Msa0986560 | Msa1052030 | 0.824355 | 8.443585e-54 | -8.615850e-47 |
| Msa0986560 | Msa1061670 | -0.815806 | 7.653865e-52 | -8.615850e-47 |
| Msa0986560 | Msa1064940 | -0.811300 | 7.502209e-51 | -8.615850e-47 |
| Msa0986560 | Msa1076280 | -0.804060 | 2.589265e-49 | -8.615850e-47 |
| Msa0986560 | Msa1076520 | 0.807694 | 4.460027e-50 | -8.615850e-47 |
| Msa0986560 | Msa1076830 | -0.818488 | 1.909577e-52 | -8.615850e-47 |
| Msa0986560 | Msa1087380 | -0.822164 | 2.742382e-53 | -8.615850e-47 |
| Msa0986560 | Msa1096510 | 0.825795 | 3.857007e-54 | -8.615850e-47 |
| Msa0986560 | Msa1096520 | 0.819102 | 1.385175e-52 | -8.615850e-47 |
| Msa0986560 | Msa1096570 | 0.813172 | 2.927930e-51 | -8.615850e-47 |
| Msa0986560 | Msa1104430 | 0.807829 | 4.175722e-50 | -8.615850e-47 |
| Msa0986560 | Msa1106680 | -0.803487 | 3.406006e-49 | -8.615850e-47 |
| Msa0986560 | Msa1106960 | -0.809163 | 2.167656e-50 | -8.615850e-47 |
| Msa0986560 | Msa1109880 | -0.820005 | 8.617049e-53 | -8.615850e-47 |
| Msa0986560 | Msa1116850 | 0.805885 | 1.075657e-49 | -8.615850e-47 |
| Msa0986560 | Msa1121740 | 0.811864 | 5.657006e-51 | -8.615850e-47 |
| Msa0986560 | Msa1145930 | 0.803262 | 3.791769e-49 | -8.615850e-47 |
| Msa0986560 | Msa1163340 | -0.803093 | 4.109356e-49 | -8.615850e-47 |
| Msa0986560 | Msa1170340 | -0.806691 | 7.273083e-50 | -8.615850e-47 |
| Msa0986560 | Msa1181730 | 0.814416 | 1.557935e-51 | -8.615850e-47 |
| Msa0986560 | Msa1215220 | 0.818051 | 2.398006e-52 | -8.615850e-47 |
| Msa0986560 | Msa1228280 | 0.803260 | 3.794686e-49 | -8.615850e-47 |
| Msa0986560 | Msa1228330 | 0.808256 | 3.386784e-50 | -8.615850e-47 |
| Msa0986560 | Msa1238250 | -0.800031 | 1.744331e-48 | -8.615850e-47 |
| Msa0986560 | Msa1243630 | 0.814932 | 1.197547e-51 | -8.615850e-47 |
| Msa0986560 | Msa1243730 | 0.801856 | 7.391569e-49 | -8.615850e-47 |
| Msa0986560 | Msa1244220 | 0.811934 | 5.460889e-51 | -8.615850e-47 |
| Msa0986560 | Msa1263610 | 0.812688 | 3.737410e-51 | -8.615850e-47 |
| Msa0986560 | Msa1278420 | 0.809001 | 2.347166e-50 | -8.615850e-47 |
| Msa0986560 | Msa1279310 | 0.800953 | 1.131598e-48 | -8.615850e-47 |
| Msa0986560 | Msa1281370 | -0.804786 | 1.827901e-49 | -8.615850e-47 |
| Msa0986560 | Msa1286860 | 0.801337 | 9.443050e-49 | -8.615850e-47 |
| Msa0986560 | Msa1319030 | -0.812868 | 3.414422e-51 | -8.615850e-47 |
| Msa0986560 | Msa1320530 | -0.800821 | 1.204118e-48 | -8.615850e-47 |
| Msa0986560 | Msa1323920 | 0.808317 | 3.287254e-50 | -8.615850e-47 |
| Msa0986560 | Msa1342400 | 0.807586 | 4.702406e-50 | -8.615850e-47 |
| Msa0986560 | Msa1355340 | -0.808684 | 2.744100e-50 | -8.615850e-47 |
| Msa0986560 | Msa1356730 | 0.818741 | 1.673672e-52 | -8.615850e-47 |
| Msa0986560 | Msa1376070 | -0.826579 | 2.510147e-54 | -8.615850e-47 |
| Msa0986560 | Msa1377520 | -0.803242 | 3.828463e-49 | -8.615850e-47 |
| Msa0986560 | Msa1388070 | 0.814059 | 1.867779e-51 | -8.615850e-47 |
| Msa0986560 | Msa1403950 | 0.801360 | 9.341849e-49 | -8.615850e-47 |
| Msa0986560 | Msa1411550 | -0.805316 | 1.416018e-49 | -8.615850e-47 |
| Msa0986560 | Msa1413900 | 0.801009 | 1.102253e-48 | -8.615850e-47 |
| Msa0986560 | Msa1427180 | 0.824541 | 7.635025e-54 | -8.615850e-47 |
| Msa0986560 | Msa1428440 | 0.818906 | 1.535243e-52 | -8.615850e-47 |
| Msa0986560 | Msa1431870 | 0.816918 | 4.315585e-52 | -8.615850e-47 |
| Msa0986560 | Msa1443550 | 0.804961 | 1.679623e-49 | -8.615850e-47 |
| Msa0986560 | Msa1450630 | 0.823215 | 1.561472e-53 | -8.615850e-47 |
| Msa0986560 | Msa1451660 | -0.804489 | 2.107926e-49 | -8.615850e-47 |
| Msa0986560 | Msa1459610 | -0.818906 | 1.535099e-52 | -8.615850e-47 |
| Msa0986560 | Msa1463500 | 0.803255 | 3.804652e-49 | -8.615850e-47 |
| Msa0239980 | Msa0986560 | 0.811329 | 7.391570e-51 | -8.615850e-47 |
| Msa0264240 | Msa0986560 | 0.834180 | 3.478380e-56 | -8.615850e-47 |
| Msa0264420 | Msa0986560 | 0.833037 | 6.711559e-56 | -8.615850e-47 |
| Msa0274260 | Msa0986560 | -0.806428 | 8.264225e-50 | -8.615850e-47 |
| Msa0302310 | Msa0986560 | 0.825956 | 3.533275e-54 | -8.615850e-47 |
| Msa0314980 | Msa0986560 | 0.806403 | 8.366984e-50 | -8.615850e-47 |
| Msa0330770 | Msa0986560 | 0.802824 | 4.671315e-49 | -8.615850e-47 |
| Msa0339560 | Msa0986560 | 0.829263 | 5.677761e-55 | -8.615850e-47 |
| Msa0339670 | Msa0986560 | 0.830404 | 2.993521e-55 | -8.615850e-47 |
| Msa0343370 | Msa0986560 | 0.814472 | 1.514209e-51 | -8.615850e-47 |
| Msa0349910 | Msa0986560 | -0.810411 | 1.168386e-50 | -8.615850e-47 |
| Msa0361700 | Msa0986560 | -0.810771 | 9.764150e-51 | -8.615850e-47 |
| Msa0364010 | Msa0986560 | 0.814411 | 1.561839e-51 | -8.615850e-47 |
| Msa0500490 | Msa0986560 | 0.826380 | 2.800832e-54 | -8.615850e-47 |
| Msa0502940 | Msa0986560 | -0.812605 | 3.897296e-51 | -8.615850e-47 |
| Msa0521940 | Msa0986560 | -0.805275 | 1.443823e-49 | -8.615850e-47 |
| Msa0525800 | Msa0986560 | 0.805176 | 1.514938e-49 | -8.615850e-47 |
| Msa0535570 | Msa0986560 | -0.800712 | 1.267295e-48 | -8.615850e-47 |
| Msa0538450 | Msa0986560 | -0.801874 | 7.328448e-49 | -8.615850e-47 |
| Msa0538520 | Msa0986560 | -0.806561 | 7.749787e-50 | -8.615850e-47 |
| Msa0545230 | Msa0986560 | 0.824341 | 8.505512e-54 | -8.615850e-47 |
| Msa0560370 | Msa0986560 | 0.803543 | 3.315579e-49 | -8.615850e-47 |
| Msa0580540 | Msa0986560 | 0.807413 | 5.115994e-50 | -8.615850e-47 |
| Msa0591490 | Msa0986560 | -0.822522 | 2.265173e-53 | -8.615850e-47 |
| Msa0600820 | Msa0986560 | 0.814379 | 1.587404e-51 | -8.615850e-47 |
| Msa0601920 | Msa0986560 | -0.810659 | 1.032594e-50 | -8.615850e-47 |
| Msa0863840 | Msa0986560 | -0.807198 | 5.682530e-50 | -8.615850e-47 |
| Msa0863860 | Msa0986560 | -0.806937 | 6.454669e-50 | -8.615850e-47 |
| Msa0864160 | Msa0986560 | -0.804500 | 2.096848e-49 | -8.615850e-47 |
| Msa0867080 | Msa0986560 | -0.816319 | 5.880451e-52 | -8.615850e-47 |
| Msa0868040 | Msa0986560 | 0.809091 | 2.245360e-50 | -8.615850e-47 |
| Msa0884840 | Msa0986560 | 0.834869 | 2.335550e-56 | -8.615850e-47 |
| Msa0896920 | Msa0986560 | -0.818431 | 1.967163e-52 | -8.615850e-47 |
| Msa0898830 | Msa0986560 | 0.809993 | 1.437904e-50 | -8.615850e-47 |
| Msa0912110 | Msa0986560 | 0.856067 | 4.133179e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTGATTGCAAAACATTTC+AGG | 0.237640 | 6_4:-35230950 | Msa0986560:five_prime_UTR |
| CCGAGTACAGTATTTGATTC+TGG | 0.326284 | 6_4:+35231332 | None:intergenic |
| GTACCTTCCGTCAATGTCAT+AGG | 0.369451 | 6_4:-35231377 | Msa0986560:five_prime_UTR |
| AATAATTGCTGCTGGGATTC+CGG | 0.377025 | 6_4:+35231097 | None:intergenic |
| ATTTCAATTGCCAGCTAACT+TGG | 0.391080 | 6_4:-35231077 | Msa0986560:five_prime_UTR |
| ATATGTCACAATGATAGATT+TGG | 0.405859 | 6_4:-35230903 | Msa0986560:exon |
| TATATTAACTTAAGAAAAGA+TGG | 0.415964 | 6_4:+35230859 | None:intergenic |
| GTCTCTCCCTATGACATTGA+CGG | 0.434125 | 6_4:+35231370 | None:intergenic |
| CTGCTGCGAGAACTATCAAA+AGG | 0.443736 | 6_4:-35231033 | Msa0986560:five_prime_UTR |
| AACTGTTGAACCAAGTTAGC+TGG | 0.464113 | 6_4:+35231067 | None:intergenic |
| GCAATTGAAATAATTGCTGC+TGG | 0.469883 | 6_4:+35231089 | None:intergenic |
| TACAGTATTTGATTCTGGTC+GGG | 0.473562 | 6_4:+35231337 | None:intergenic |
| AACAGGAAGAATGTCTTGAA+TGG | 0.494577 | 6_4:+35231276 | None:intergenic |
| TCAGGAATGACGGAAAGAAC+AGG | 0.508934 | 6_4:+35231259 | None:intergenic |
| GATAGTTCTCGCAGCAGCGC+GGG | 0.517491 | 6_4:+35231039 | None:intergenic |
| CCAGAATCAAATACTGTACT+CGG | 0.551398 | 6_4:-35231332 | Msa0986560:five_prime_UTR |
| TACCTTCCGTCAATGTCATA+GGG | 0.560231 | 6_4:-35231376 | Msa0986560:five_prime_UTR |
| TAGATTTACCTCAGGAATGA+CGG | 0.561552 | 6_4:+35231249 | None:intergenic |
| GTACAGTATTTGATTCTGGT+CGG | 0.577930 | 6_4:+35231336 | None:intergenic |
| TGTTCTTTCCGTCATTCCTG+AGG | 0.588868 | 6_4:-35231257 | Msa0986560:intron |
| CAATTGAAATAATTGCTGCT+GGG | 0.591793 | 6_4:+35231090 | None:intergenic |
| TGCTGCGAGAACTATCAAAA+GGG | 0.593150 | 6_4:-35231032 | Msa0986560:five_prime_UTR |
| AATTGCTGCTGGGATTCCGG+TGG | 0.620635 | 6_4:+35231100 | None:intergenic |
| ATGTAAATTTCAGCTCCCAC+CGG | 0.623839 | 6_4:-35231116 | Msa0986560:intron |
| CTCCCTATGACATTGACGGA+AGG | 0.631184 | 6_4:+35231374 | None:intergenic |
| ATTGCTGCTGGGATTCCGGT+GGG | 0.640904 | 6_4:+35231101 | None:intergenic |
| AATGTCATAGGGAGAGACAA+AGG | 0.665794 | 6_4:-35231365 | Msa0986560:five_prime_UTR |
| TGATAGTTCTCGCAGCAGCG+CGG | 0.673188 | 6_4:+35231038 | None:intergenic |
| GAATCAAATACTGTACTCGG+AGG | 0.741867 | 6_4:-35231329 | Msa0986560:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTAACTTAAGAAAAGA+TGG | + | chr6_4:35231292-35231311 | None:intergenic | 15.0% |
| !! | TACCAAAAAGTAATAAAGAA+TGG | - | chr6_4:35231389-35231408 | Msa0986560:five_prime_UTR | 20.0% |
| !!! | TTCCATTCTTTATTACTTTT+TGG | + | chr6_4:35231394-35231413 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCTTCTCACTA+AGG | - | chr6_4:35231178-35231197 | Msa0986560:intron | 25.0% |
| ! | ATATGTCACAATGATAGATT+TGG | - | chr6_4:35231245-35231264 | Msa0986560:intron | 25.0% |
| CAATTGAAATAATTGCTGCT+GGG | + | chr6_4:35231061-35231080 | None:intergenic | 30.0% | |
| !!! | AAAAGGGTGTTTTTGTGATA+TGG | - | chr6_4:35231132-35231151 | Msa0986560:intron | 30.0% |
| ! | TTTTTGTGATATGGATGTAC+TGG | - | chr6_4:35231141-35231160 | Msa0986560:intron | 30.0% |
| AAAACCAACAGAAAAAGCAA+AGG | + | chr6_4:35231331-35231350 | None:intergenic | 30.0% | |
| !! | TTGGTTTTCATGTGATGATT+AGG | - | chr6_4:35231343-35231362 | Msa0986560:five_prime_UTR | 30.0% |
| TACAGTATTTGATTCTGGTC+GGG | + | chr6_4:35230814-35230833 | None:intergenic | 35.0% | |
| GTACAGTATTTGATTCTGGT+CGG | + | chr6_4:35230815-35230834 | None:intergenic | 35.0% | |
| CCAGAATCAAATACTGTACT+CGG | - | chr6_4:35230816-35230835 | Msa0986560:three_prime_UTR | 35.0% | |
| AACAGGAAGAATGTCTTGAA+TGG | + | chr6_4:35230875-35230894 | None:intergenic | 35.0% | |
| TAGATTTACCTCAGGAATGA+CGG | + | chr6_4:35230902-35230921 | None:intergenic | 35.0% | |
| CAAATGCTTAGATTTACCTC+AGG | + | chr6_4:35230910-35230929 | None:intergenic | 35.0% | |
| !! | AGTTGTTTTGTCAGTGTTAG+TGG | + | chr6_4:35230954-35230973 | None:intergenic | 35.0% |
| GTCATAAGCAATTTCACATC+TGG | - | chr6_4:35230976-35230995 | Msa0986560:five_prime_UTR | 35.0% | |
| GCAATTGAAATAATTGCTGC+TGG | + | chr6_4:35231062-35231081 | None:intergenic | 35.0% | |
| ATTTCAATTGCCAGCTAACT+TGG | - | chr6_4:35231071-35231090 | Msa0986560:five_prime_UTR | 35.0% | |
| AGGTGATTGCAAAACATTTC+AGG | - | chr6_4:35231198-35231217 | Msa0986560:intron | 35.0% | |
| !!! | TGTACCTTTGCTTTTTCTGT+TGG | - | chr6_4:35231324-35231343 | Msa0986560:five_prime_UTR | 35.0% |
| TACCTTCCGTCAATGTCATA+GGG | - | chr6_4:35230772-35230791 | Msa0986560:three_prime_UTR | 40.0% | |
| AATGTCATAGGGAGAGACAA+AGG | - | chr6_4:35230783-35230802 | Msa0986560:three_prime_UTR | 40.0% | |
| CCGAGTACAGTATTTGATTC+TGG | + | chr6_4:35230819-35230838 | None:intergenic | 40.0% | |
| GAATCAAATACTGTACTCGG+AGG | - | chr6_4:35230819-35230838 | Msa0986560:three_prime_UTR | 40.0% | |
| ATGTAAATTTCAGCTCCCAC+CGG | - | chr6_4:35231032-35231051 | Msa0986560:five_prime_UTR | 40.0% | |
| AATAATTGCTGCTGGGATTC+CGG | + | chr6_4:35231054-35231073 | None:intergenic | 40.0% | |
| AACTGTTGAACCAAGTTAGC+TGG | + | chr6_4:35231084-35231103 | None:intergenic | 40.0% | |
| TGCTGCGAGAACTATCAAAA+GGG | - | chr6_4:35231116-35231135 | Msa0986560:intron | 40.0% | |
| GTACCTTCCGTCAATGTCAT+AGG | - | chr6_4:35230771-35230790 | Msa0986560:three_prime_UTR | 45.0% | |
| GTCTCTCCCTATGACATTGA+CGG | + | chr6_4:35230781-35230800 | None:intergenic | 45.0% | |
| ! | TCAGGAATGACGGAAAGAAC+AGG | + | chr6_4:35230892-35230911 | None:intergenic | 45.0% |
| TGTTCTTTCCGTCATTCCTG+AGG | - | chr6_4:35230891-35230910 | Msa0986560:CDS | 45.0% | |
| CTGCTGCGAGAACTATCAAA+AGG | - | chr6_4:35231115-35231134 | Msa0986560:intron | 45.0% | |
| CTCCCTATGACATTGACGGA+AGG | + | chr6_4:35230777-35230796 | None:intergenic | 50.0% | |
| ATTGCTGCTGGGATTCCGGT+GGG | + | chr6_4:35231050-35231069 | None:intergenic | 55.0% | |
| AATTGCTGCTGGGATTCCGG+TGG | + | chr6_4:35231051-35231070 | None:intergenic | 55.0% | |
| TGATAGTTCTCGCAGCAGCG+CGG | + | chr6_4:35231113-35231132 | None:intergenic | 55.0% | |
| GATAGTTCTCGCAGCAGCGC+GGG | + | chr6_4:35231112-35231131 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 35230750 | 35231420 | 35230750 | ID=Msa0986560;Name=Msa0986560 |
| chr6_4 | mRNA | 35230750 | 35231420 | 35230750 | ID=Msa0986560-mRNA-1;Parent=Msa0986560;Name=Msa0986560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=373|1|1|1|1|1|2|118|15 |
| chr6_4 | exon | 35230750 | 35231125 | 35230750 | ID=Msa0986560-mRNA-1:exon:9021;Parent=Msa0986560-mRNA-1 |
| chr6_4 | exon | 35231258 | 35231420 | 35231258 | ID=Msa0986560-mRNA-1:exon:9020;Parent=Msa0986560-mRNA-1 |
| chr6_4 | five_prime_UTR | 35231258 | 35231420 | 35231258 | ID=Msa0986560-mRNA-1:five_prime_utr;Parent=Msa0986560-mRNA-1 |
| chr6_4 | five_prime_UTR | 35230916 | 35231125 | 35230916 | ID=Msa0986560-mRNA-1:five_prime_utr;Parent=Msa0986560-mRNA-1 |
| chr6_4 | CDS | 35230868 | 35230915 | 35230868 | ID=Msa0986560-mRNA-1:cds;Parent=Msa0986560-mRNA-1 |
| chr6_4 | three_prime_UTR | 35230750 | 35230867 | 35230750 | ID=Msa0986560-mRNA-1:three_prime_utr;Parent=Msa0986560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
