AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640780 MtrunA17_Chr4g0025201 91.667 552 26 1 1 532 192 743 0.0 1054
Msa0640780 MtrunA17_Chr2g0322361 54.545 550 226 4 1 527 197 745 0.0 610
Msa0640780 MtrunA17_Chr2g0322371 53.442 552 230 5 1 529 190 737 0.0 597
Msa0640780 MtrunA17_Chr2g0322351 53.249 554 225 9 1 531 194 736 0.0 554
Msa0640780 MtrunA17_Chr2g0322331 49.740 384 158 5 179 531 1 380 1.16e-123 367
Msa0640780 MtrunA17_Chr4g0073711 31.404 570 310 13 1 499 431 990 7.69e-78 264
Msa0640780 MtrunA17_Chr8g0379241 30.869 541 286 11 34 499 414 941 7.74e-75 255
Msa0640780 MtrunA17_Chr2g0284211 30.515 544 287 12 34 499 399 929 1.68e-72 249
Msa0640780 MtrunA17_Chr8g0364641 31.429 560 312 13 1 499 385 933 4.85e-72 247
Msa0640780 MtrunA17_Chr3g0102541 30.298 571 319 13 1 525 193 730 1.57e-71 242
Msa0640780 MtrunA17_Chr1g0183381 30.351 570 312 14 1 500 303 857 1.21e-69 240
Msa0640780 MtrunA17_Chr3g0102531 30.561 553 327 14 1 519 192 721 3.63e-69 236
Msa0640780 MtrunA17_Chr3g0102551 28.496 565 330 11 1 523 201 733 3.03e-68 233
Msa0640780 MtrunA17_Chr2g0322341 71.053 152 42 2 1 151 197 347 7.14e-68 223
Msa0640780 MtrunA17_Chr7g0267731 28.305 590 318 12 1 499 363 938 8.29e-68 236
Msa0640780 MtrunA17_Chr3g0137951 28.065 620 340 11 1 528 461 1066 1.26e-67 236
Msa0640780 MtrunA17_Chr1g0201731 29.604 581 313 13 33 528 508 1077 2.85e-66 232
Msa0640780 MtrunA17_Chr3g0088821 28.417 556 298 12 33 500 488 1031 2.53e-65 229
Msa0640780 MtrunA17_Chr8g0383701 28.391 553 294 12 37 500 510 1049 6.52e-65 228
Msa0640780 MtrunA17_Chr5g0410641 29.945 541 288 14 56 523 567 1089 1.30e-64 228
Msa0640780 MtrunA17_Chr4g0046401 28.544 522 328 12 6 499 202 706 1.37e-64 223
Msa0640780 MtrunA17_Chr8g0352231 27.878 556 301 12 33 500 488 1031 6.30e-64 225
Msa0640780 MtrunA17_Chr2g0296991 28.405 602 321 14 1 499 402 996 7.38e-63 222
Msa0640780 MtrunA17_Chr1g0165411 30.451 532 288 13 56 523 558 1071 7.68e-62 219
Msa0640780 MtrunA17_Chr1g0186381 29.760 541 317 16 24 524 214 731 1.54e-61 215
Msa0640780 MtrunA17_Chr7g0269741 28.843 527 282 12 56 500 611 1126 6.46e-61 217
Msa0640780 MtrunA17_Chr3g0078671 28.785 601 317 18 1 504 418 1004 1.02e-60 216
Msa0640780 MtrunA17_Chr1g0165421 29.637 523 283 11 56 500 572 1087 1.98e-59 213
Msa0640780 MtrunA17_Chr2g0307191 28.138 494 311 14 36 504 215 689 5.33e-59 207
Msa0640780 MtrunA17_Chr4g0039801 28.752 553 292 14 56 525 588 1121 1.13e-58 210
Msa0640780 MtrunA17_Chr2g0297351 29.038 520 278 11 56 499 475 979 2.74e-58 209
Msa0640780 MtrunA17_Chr2g0298581 28.776 490 303 14 36 499 215 684 1.68e-56 201
Msa0640780 MtrunA17_Chr3g0077511 28.266 467 298 12 58 499 232 686 5.07e-56 199
Msa0640780 MtrunA17_Chr3g0095791 26.376 527 328 16 1 499 189 683 7.51e-53 190
Msa0640780 MtrunA17_Chr7g0274751 28.404 426 196 11 56 429 376 744 2.45e-43 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640780 AT2G32540.1 41.125 569 281 10 2 526 194 752 2.53e-141 426
Msa0640780 AT2G32530.1 39.649 570 288 11 2 526 194 752 2.14e-134 408
Msa0640780 AT4G15320.3 39.410 576 287 13 1 526 193 756 2.87e-129 395
Msa0640780 AT4G15320.4 39.410 576 287 13 1 526 208 771 4.84e-129 395
Msa0640780 AT4G15320.5 39.442 573 285 13 1 523 193 753 6.99e-129 394
Msa0640780 AT4G15290.1 39.789 568 288 13 1 523 193 751 4.18e-128 392
Msa0640780 AT2G32620.4 39.229 571 291 12 2 526 98 658 4.30e-125 381
Msa0640780 AT2G32620.1 39.229 571 291 12 2 526 194 754 8.17e-124 380
Msa0640780 AT2G32610.1 39.229 571 292 12 2 526 195 756 7.64e-121 373
Msa0640780 AT2G32620.3 40.964 415 200 10 2 381 194 598 2.93e-95 302
Msa0640780 AT4G15320.2 35.992 514 222 13 1 433 193 680 2.68e-94 304
Msa0640780 AT4G15320.1 34.133 542 222 14 1 433 208 723 2.75e-88 289
Msa0640780 AT2G32620.2 45.152 330 159 8 2 317 194 515 9.19e-88 281
Msa0640780 AT5G17420.1 30.944 572 311 12 1 499 418 978 1.25e-76 261
Msa0640780 AT5G05170.1 29.949 591 310 13 1 499 439 1017 8.51e-75 256
Msa0640780 AT5G09870.1 29.711 589 315 12 1 500 444 1022 2.17e-73 253
Msa0640780 AT5G64740.1 29.223 592 317 12 1 500 456 1037 3.05e-73 252
Msa0640780 AT4G18780.1 30.713 547 285 11 34 499 402 935 1.46e-72 249
Msa0640780 AT1G55850.1 32.685 514 286 10 31 519 241 719 3.22e-69 236
Msa0640780 AT4G24000.2 32.166 457 256 10 34 465 41 468 3.35e-69 231
Msa0640780 AT1G32180.1 30.258 542 292 12 56 521 428 959 1.05e-68 238
Msa0640780 AT1G32180.2 30.258 542 292 12 56 521 428 959 1.05e-68 238
Msa0640780 AT4G24010.1 31.648 534 287 19 1 491 194 692 1.12e-68 235
Msa0640780 AT4G24000.1 32.321 461 250 12 34 465 233 660 6.99e-68 233
Msa0640780 AT2G21770.1 27.872 592 322 12 1 500 462 1040 3.08e-67 235
Msa0640780 AT2G25540.1 28.341 621 337 13 1 528 435 1040 4.33e-67 234
Msa0640780 AT4G32410.1 28.956 594 313 13 1 500 455 1033 3.33e-66 232
Msa0640780 AT4G23990.2 30.938 501 282 16 4 466 2 476 1.02e-64 220
Msa0640780 AT4G23990.1 30.754 504 285 15 1 466 213 690 2.30e-63 221
Msa0640780 AT1G02730.1 29.189 555 296 14 56 525 619 1161 6.00e-62 220
Msa0640780 AT4G39350.1 27.656 593 323 14 1 500 457 1036 1.15e-61 219
Msa0640780 AT4G38190.1 28.517 526 311 11 56 525 569 1085 1.67e-58 210
Msa0640780 AT5G16910.1 29.174 545 297 14 56 525 594 1124 4.59e-58 209
Msa0640780 AT3G03050.1 28.755 546 301 13 56 525 591 1124 1.05e-57 208
Msa0640780 AT2G33100.2 28.108 555 307 11 56 531 482 1023 4.73e-57 206
Msa0640780 AT2G33100.1 28.108 555 307 11 56 531 482 1023 4.73e-57 206
Msa0640780 AT5G44030.3 30.678 339 201 6 185 499 394 722 8.09e-40 154
Msa0640780 AT5G44030.3 40.361 166 94 2 33 194 153 317 1.50e-33 135
Msa0640780 AT5G44030.2 30.678 339 201 6 185 499 702 1030 1.72e-39 154
Msa0640780 AT5G44030.2 40.361 166 94 2 33 194 461 625 2.23e-33 135
Msa0640780 AT5G44030.1 30.678 339 201 6 185 499 673 1001 2.28e-39 154
Msa0640780 AT5G44030.1 40.361 166 94 2 33 194 432 596 2.40e-33 135

Find 162 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAAGCTTGGGATAGATTT+TGG 0.112878 4_3:-40086864 None:intergenic
AAAAGTACAATGTGCAAATT+AGG 0.126668 4_3:+40086570 Msa0640780:five_prime_UTR
GCTATTCATGTTGCTTCTTA+TGG 0.159248 4_3:+40088739 Msa0640780:CDS
CTATTTGAAACGGGTAAATT+TGG 0.159647 4_3:+40090355 Msa0640780:CDS
CATGAATTTATAAGGTTATA+TGG 0.169345 4_3:+40087819 Msa0640780:intron
AAGGCATGCATAACAATATT+TGG 0.170240 4_3:-40088115 None:intergenic
CATAGAAGAAAAGTTATTTA+TGG 0.192304 4_3:+40088463 Msa0640780:CDS
TTTCAGCCACAAAGTTTAAA+TGG 0.208113 4_3:+40090256 Msa0640780:CDS
ACCATTCTTGTCTGAATTCT+TGG 0.215541 4_3:-40086640 None:intergenic
ATATACTCTATATGAATATT+TGG 0.217471 4_3:+40089955 Msa0640780:CDS
TGCACTTGTGGATTCTTGTT+TGG 0.222239 4_3:+40090612 Msa0640780:three_prime_UTR
GCACTTGTGGATTCTTGTTT+GGG 0.290163 4_3:+40090613 Msa0640780:three_prime_UTR
TGAAGAGCATAGAAGATTAG+AGG 0.303612 4_3:-40086506 None:intergenic
TGTATTTGATCATATGTTAT+TGG 0.310371 4_3:+40090317 Msa0640780:CDS
GCAATATTTATCAAGTTGTT+TGG 0.318110 4_3:+40090232 Msa0640780:CDS
CACAAACAGTACCTTGATTA+TGG 0.319801 4_3:-40086937 None:intergenic
ATGACAGAAGATATACTAAC+TGG 0.326040 4_3:+40088977 Msa0640780:CDS
ACTGTTCTACTCAAATTGTT+AGG 0.328449 4_3:+40090064 Msa0640780:CDS
TAATTTCCATTTAAACTTTG+TGG 0.330588 4_3:-40090262 None:intergenic
ACACTCAAAGACGATCCTTT+TGG 0.332746 4_3:+40088208 Msa0640780:CDS
TTGAAATGATGTGGTTGCTT+TGG 0.334476 4_3:-40087905 None:intergenic
ACAGGTTGTGCTCCAATTGA+TGG 0.341818 4_3:+40089061 Msa0640780:CDS
TCATCACAAAAGTATCTAAA+TGG 0.346788 4_3:-40086596 None:intergenic
AGAATTTACCAACACATTCA+TGG 0.350129 4_3:-40087936 None:intergenic
CGGCACTGGCTGGGGTAAAC+AGG 0.353921 4_3:+40088771 Msa0640780:CDS
CTTATATGTGGATCATGAAC+TGG 0.357355 4_3:+40089203 Msa0640780:CDS
TTCAAAATTTGCAAAACATT+GGG 0.361048 4_3:+40086535 Msa0640780:five_prime_UTR
TTGTCTGAATTCTTGGTCAT+TGG 0.361801 4_3:-40086633 None:intergenic
GAAATAATTTACAATTTGTA+AGG 0.370384 4_3:-40090522 None:intergenic
TGGATCATGAACTGGGGATT+TGG 0.370780 4_3:+40089211 Msa0640780:CDS
AAACATGGTTCACCTTATCT+TGG 0.371514 4_3:+40084124 Msa0640780:five_prime_UTR
TATTTGAAACGGGTAAATTT+GGG 0.371926 4_3:+40090356 Msa0640780:CDS
GCTTGTTACGTTTCTGATGA+TGG 0.375639 4_3:+40086476 Msa0640780:five_prime_UTR
GAGTGTAGCATAGAATTGTT+GGG 0.378771 4_3:-40088191 None:intergenic
ATCAATATCACTAGCTGAAT+AGG 0.385336 4_3:-40088695 None:intergenic
GTTATTCAGACAAAAGTCTC+TGG 0.388439 4_3:+40088034 Msa0640780:intron
GAAATCAGTTGGTCATGCTT+TGG 0.397044 4_3:+40088663 Msa0640780:CDS
TATATTCCTACTGCAATAGT+TGG 0.400122 4_3:+40089920 Msa0640780:CDS
CCTGTGAAGGCTATTGGTTC+TGG 0.400123 4_3:-40089043 None:intergenic
AAGTGCAGTGCTTGCAGTCT+TGG 0.402322 4_3:-40090596 None:intergenic
ATGAATTTATAAGGTTATAT+GGG 0.402985 4_3:+40087820 Msa0640780:intron
ATACAGGTGGGGCCATCAAT+TGG 0.406422 4_3:-40089073 None:intergenic
AAAGTACAATGTGCAAATTA+GGG 0.407961 4_3:+40086571 Msa0640780:five_prime_UTR
TACCTTTGGAGGAGACGGTC+AGG 0.411734 4_3:-40084195 None:intergenic
GCACAACCTGTGAAGGCTAT+TGG 0.414383 4_3:-40089049 None:intergenic
TGAGTGTAGCATAGAATTGT+TGG 0.415415 4_3:-40088192 None:intergenic
CTTCAAAATTTGCAAAACAT+TGG 0.416834 4_3:+40086534 Msa0640780:five_prime_UTR
GCATAACATACTTGAGCAAC+TGG 0.416847 4_3:-40089235 None:intergenic
TTGTGGATTCTTGTTTGGGA+TGG 0.418454 4_3:+40090617 Msa0640780:three_prime_UTR
TTGGTCATGCTTTGGAAGAT+AGG 0.419012 4_3:+40088671 Msa0640780:CDS
AACTCTCCTTCAAGTAAGCT+TGG 0.422451 4_3:-40086876 None:intergenic
GCTTCTTATGGATATGAATA+CGG 0.422542 4_3:+40088751 Msa0640780:CDS
TTCCTCCGTAGAACATTCCT+TGG 0.423092 4_3:-40088429 None:intergenic
AACGATAAGATGGTAGTTCC+TGG 0.429194 4_3:-40090199 None:intergenic
GGTACAAACACAATTACAAA+AGG 0.432125 4_3:+40083997 Msa0640780:five_prime_UTR
ACAGTGTTTATTGTGATGAT+TGG 0.432496 4_3:-40086413 None:intergenic
GAACAACTACTCTATCCCTT+TGG 0.439701 4_3:+40084082 Msa0640780:five_prime_UTR
GATATGAATACGGCACTGGC+TGG 0.441391 4_3:+40088761 Msa0640780:CDS
TCTCTTATGTTGAGCCATAC+AGG 0.444479 4_3:-40089089 None:intergenic
GACTGCAAGCACTGCACTTG+TGG 0.447725 4_3:+40090600 Msa0640780:three_prime_UTR
TCTATCCCAAGCTTACTTGA+AGG 0.451031 4_3:+40086870 Msa0640780:CDS
TGTGGATTCTTGTTTGGGAT+GGG 0.452073 4_3:+40090618 Msa0640780:three_prime_UTR
TTGAGAGGACTATTTGAAAC+GGG 0.456847 4_3:+40090346 Msa0640780:CDS
AATTGATGGCCCCACCTGTA+TGG 0.457674 4_3:+40089075 Msa0640780:CDS
CTCTCCGGATGACGTAGAAA+AGG 0.462366 4_3:+40088489 Msa0640780:CDS
TACCTTGGAGCAGGATTAGC+AGG 0.473026 4_3:+40088403 Msa0640780:CDS
AACAGTACCTTGATTATGGC+TGG 0.473416 4_3:-40086933 None:intergenic
AACAAAGAAATGGCTGAAGA+TGG 0.473942 4_3:+40087845 Msa0640780:CDS
GGTAACCAAGCAACAACAAA+AGG 0.481449 4_3:-40084046 None:intergenic
AGAATAACATCTATGAATGC+TGG 0.482111 4_3:+40090025 Msa0640780:CDS
ATATGAATACGGCACTGGCT+GGG 0.484690 4_3:+40088762 Msa0640780:CDS
TATATGGGAGAACAAAGAAA+TGG 0.486548 4_3:+40087835 Msa0640780:CDS
CTATATGAATATTTGGCCTC+AGG 0.488511 4_3:+40089962 Msa0640780:CDS
ATTGCCATTTGATTTCCAAA+AGG 0.492263 4_3:-40088223 None:intergenic
TATGAATACGGCACTGGCTG+GGG 0.500144 4_3:+40088763 Msa0640780:CDS
AGAAAGATCTTCCTCCCTCT+AGG 0.503118 4_3:+40090116 Msa0640780:CDS
CAATAGTCAAATACCTTTGG+AGG 0.504802 4_3:-40084206 None:intergenic
ATATTCCTACTGCAATAGTT+GGG 0.507014 4_3:+40089921 Msa0640780:CDS
ACTCTCCTTCAAGTAAGCTT+GGG 0.509268 4_3:-40086875 None:intergenic
GTCACAAATATATCCACTGC+TGG 0.509996 4_3:-40086365 None:intergenic
TGGAAATTATGAGTGTGGTT+TGG 0.513593 4_3:+40090276 Msa0640780:CDS
AAGGAACTTATGAAATCAGT+TGG 0.513957 4_3:+40088652 Msa0640780:CDS
TTAAATGGAAATTATGAGTG+TGG 0.516644 4_3:+40090271 Msa0640780:CDS
GTGTTTATTGTGATGATTGG+TGG 0.517309 4_3:-40086410 None:intergenic
TTTGAGAGGACTATTTGAAA+CGG 0.519798 4_3:+40090345 Msa0640780:CDS
CTTGGACAAGTGCTACACTT+TGG 0.522574 4_3:-40090578 None:intergenic
AATCAAAGCAATAAACCAAA+GGG 0.523838 4_3:-40084097 None:intergenic
ACAAGAATGGTTACAGATGA+AGG 0.525648 4_3:+40086652 Msa0640780:exon
TTGCTTTGATTTGCGAAACA+TGG 0.529029 4_3:+40084109 Msa0640780:five_prime_UTR
GATCAACATGATAAGAATGT+TGG 0.532049 4_3:+40090142 Msa0640780:CDS
AGGAAACAACTTATCTAAAG+TGG 0.533622 4_3:+40088603 Msa0640780:intron
ACAATCCACGTTCAACATGA+AGG 0.535399 4_3:-40088074 None:intergenic
TGATGTTAACAAAGCTGTTG+AGG 0.535514 4_3:+40088714 Msa0640780:CDS
TACCAACACATTCATGGCAC+CGG 0.536261 4_3:-40087930 None:intergenic
GACGGTGAAAATCCAAGATA+AGG 0.536524 4_3:-40084136 None:intergenic
ATCACCTTAGCTAAGATCAA+TGG 0.537668 4_3:+40083938 Msa0640780:five_prime_UTR
GAAAGATCTTCCTCCCTCTA+GGG 0.544091 4_3:+40090117 Msa0640780:CDS
GTTCAACATGAAGGGTGCAT+TGG 0.545978 4_3:-40088065 None:intergenic
TAAATCCCAACTATTGCAGT+AGG 0.548363 4_3:-40089926 None:intergenic
AAGCATGGTGGAACAATCAA+AGG 0.548964 4_3:+40089996 Msa0640780:CDS
AGTTATTTATGGTCTCTCTC+CGG 0.549554 4_3:+40088474 Msa0640780:CDS
TTATGGCTGGATGATTTGTC+CGG 0.551612 4_3:-40086920 None:intergenic
GTATGGCTCAACATAAGAGA+TGG 0.552428 4_3:+40089092 Msa0640780:CDS
CAACATAAGAGATGGGCCAC+AGG 0.555868 4_3:+40089100 Msa0640780:CDS
TCTATGAATGCTGGATTCTG+TGG 0.557758 4_3:+40090034 Msa0640780:CDS
TATGGATATGAATACGGCAC+TGG 0.557824 4_3:+40088757 Msa0640780:CDS
TTATTCAGACAAAAGTCTCT+GGG 0.558475 4_3:+40088035 Msa0640780:intron
TCTCCGGATGACGTAGAAAA+GGG 0.558666 4_3:+40088490 Msa0640780:CDS
TTATGTTGAGCCATACAGGT+GGG 0.559671 4_3:-40089085 None:intergenic
ACCAAGAATTCAGACAAGAA+TGG 0.561970 4_3:+40086639 Msa0640780:five_prime_UTR
TGTCAATTGCAACGATAAGA+TGG 0.562630 4_3:-40090209 None:intergenic
CAACCACATCATTTCAAAGC+CGG 0.562761 4_3:+40087911 Msa0640780:CDS
TTGGCCATTGATCTTAGCTA+AGG 0.567296 4_3:-40083942 None:intergenic
AAATCATCCAGCCATAATCA+AGG 0.569735 4_3:+40086926 Msa0640780:CDS
TAATGTAAACTACAGTACCT+TGG 0.570475 4_3:+40088388 Msa0640780:intron
TTATATGTGGATCATGAACT+GGG 0.572236 4_3:+40089204 Msa0640780:CDS
GTACAAACACAATTACAAAA+GGG 0.574146 4_3:+40083998 Msa0640780:five_prime_UTR
CCAGAACCAATAGCCTTCAC+AGG 0.576406 4_3:+40089043 Msa0640780:CDS
AAACTACAGTACCTTGGAGC+AGG 0.577144 4_3:+40088394 Msa0640780:intron
GCAGGATTAGCAGGACTCCA+AGG 0.577239 4_3:+40088412 Msa0640780:CDS
ACCTTTGGAGGAGACGGTCA+GGG 0.577615 4_3:-40084194 None:intergenic
TCAAATACCTTTGGAGGAGA+CGG 0.578586 4_3:-40084200 None:intergenic
TCTACATATCCAGAGAAAAG+AGG 0.579233 4_3:+40087882 Msa0640780:CDS
AATTGGAGCACAACCTGTGA+AGG 0.582766 4_3:-40089056 None:intergenic
GGACTCCAAGGAATGTTCTA+CGG 0.586185 4_3:+40088424 Msa0640780:CDS
AAATCAAAGCAATAAACCAA+AGG 0.590573 4_3:-40084098 None:intergenic
TTGGAGGAGACGGTCAGGGT+TGG 0.591314 4_3:-40084190 None:intergenic
ACCCTGACCGTCTCCTCCAA+AGG 0.592049 4_3:+40084193 Msa0640780:five_prime_UTR
TAACAAGCTAGCTTGTGAGA+TGG 0.592884 4_3:-40086461 None:intergenic
ATTTGTTCAATACAGGATTG+GGG 0.593445 4_3:+40089893 Msa0640780:intron
TATGGCTCAACATAAGAGAT+GGG 0.599447 4_3:+40089093 Msa0640780:CDS
CCTTTGCATATTGTAGACAA+AGG 0.599656 4_3:-40090382 None:intergenic
TCTTAGCCGTAAAATAGATG+TGG 0.602585 4_3:+40086839 Msa0640780:CDS
TGGACTCCATTGAGTGGAGA+CGG 0.603007 4_3:-40084154 None:intergenic
CTGGATATGTAGATCAAATG+TGG 0.604731 4_3:-40087872 None:intergenic
CAATCCACGTTCAACATGAA+GGG 0.616695 4_3:-40088073 None:intergenic
TATGTTGAGCCATACAGGTG+GGG 0.616917 4_3:-40089084 None:intergenic
CCTTTGTCTACAATATGCAA+AGG 0.617973 4_3:+40090382 Msa0640780:CDS
AGTGTAGCATAGAATTGTTG+GGG 0.620173 4_3:-40088190 None:intergenic
GTCCTGCTAATCCTGCTCCA+AGG 0.623330 4_3:-40088405 None:intergenic
TGCACCCTTCATGTTGAACG+TGG 0.627495 4_3:+40088069 Msa0640780:CDS
CAGGACTGTCAATTAAAGCA+TGG 0.631923 4_3:+40089981 Msa0640780:CDS
TGTGCAAGAACTTCCAGCAG+TGG 0.635221 4_3:+40086352 Msa0640780:five_prime_UTR
TCATGTTGATCATCCCTAGA+GGG 0.637021 4_3:-40090130 None:intergenic
GAGTGGAAGAGAGTTTGAGT+TGG 0.638045 4_3:-40083961 None:intergenic
GCACCGGCTTTGAAATGATG+TGG 0.643336 4_3:-40087914 None:intergenic
AAAGGCTGGACTCCATTGAG+TGG 0.643881 4_3:-40084160 None:intergenic
AACCAAGCAACAACAAAAGG+AGG 0.647360 4_3:-40084043 None:intergenic
GGAGTCAAGCAAAATGCACA+AGG 0.647589 4_3:-40088134 None:intergenic
CTTATGTTGAGCCATACAGG+TGG 0.652213 4_3:-40089086 None:intergenic
TGCTTTAATTGACAGTCCTG+AGG 0.658217 4_3:-40089978 None:intergenic
TGACAGAAGATATACTAACT+GGG 0.667224 4_3:+40088978 Msa0640780:CDS
AGCCGGTGCCATGAATGTGT+TGG 0.669526 4_3:+40087928 Msa0640780:CDS
GACTGTCAATTAAAGCATGG+TGG 0.673791 4_3:+40089984 Msa0640780:CDS
GAAGATCTCAAGCATTCCTG+TGG 0.685486 4_3:-40089116 None:intergenic
TGTTGATCATCCCTAGAGGG+AGG 0.686634 4_3:-40090127 None:intergenic
AGTTGTTCACATACATAACA+CGG 0.687770 4_3:-40084067 None:intergenic
ATCATGTTGATCATCCCTAG+AGG 0.692053 4_3:-40090131 None:intergenic
TGCACGTGTATACGGTGGTG+AGG 0.709674 4_3:-40083900 None:intergenic
CTCCAAGGAATGTTCTACGG+AGG 0.709897 4_3:+40088427 Msa0640780:CDS
TTGTATGCACGTGTATACGG+TGG 0.729465 4_3:-40083905 None:intergenic
TATATGTGGATCATGAACTG+GGG 0.731139 4_3:+40089205 Msa0640780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTATTTTTTATTTTT+AGG - chr4_3:40086209-40086228 None:intergenic 0.0%
!!! TTTTTTGTTATAATTGTTAT+CGG - chr4_3:40084333-40084352 None:intergenic 10.0%
!!! AAATACTTTTTTTTAACAAA+TGG - chr4_3:40084719-40084738 None:intergenic 10.0%
!! TAAAAAATAAGTAGAAAATA+AGG + chr4_3:40085324-40085343 Msa0640780:intron 10.0%
!!! GATAAAAAATAATTACTTTT+TGG - chr4_3:40085775-40085794 None:intergenic 10.0%
!!! TTTAAAAATCACAATTTTTT+GGG + chr4_3:40085884-40085903 Msa0640780:intron 10.0%
!!! TTTTTTTTTTTAGGAAAAAT+TGG - chr4_3:40087168-40087187 None:intergenic 10.0%
!!! CTCTTTTTTTTTTTTTTTTT+AGG - chr4_3:40087177-40087196 None:intergenic 10.0%
!! TATATGTTACTAATTTAATT+AGG + chr4_3:40088521-40088540 Msa0640780:intron 10.0%
!! ATATGTTACTAATTTAATTA+GGG + chr4_3:40088522-40088541 Msa0640780:intron 10.0%
!! ACAAATTCAATAATAATAAA+AGG - chr4_3:40089733-40089752 None:intergenic 10.0%
!!! TTTTATTATTATTGAATTTG+TGG + chr4_3:40089732-40089751 Msa0640780:intron 10.0%
!! TGATAAATTAATTGTTATGA+AGG - chr4_3:40084258-40084277 None:intergenic 15.0%
!!! TTTTTATGTTTATTGAAAAG+CGG + chr4_3:40084360-40084379 Msa0640780:intron 15.0%
!! TAAAATAAATAAAAGGAATC+TGG + chr4_3:40085076-40085095 Msa0640780:intron 15.0%
!!! TAAACTAAAAGTTACTTTTT+AGG - chr4_3:40085408-40085427 None:intergenic 15.0%
!!! TTTTAGTTTATAATAGTGAT+CGG + chr4_3:40085418-40085437 Msa0640780:intron 15.0%
!!! TTTTCAAATATTTACTCAAA+TGG + chr4_3:40085505-40085524 Msa0640780:intron 15.0%
!!! TATTTTTAAATTCGAGTTTA+TGG + chr4_3:40085695-40085714 Msa0640780:intron 15.0%
!!! GTTTAAAAATCACAATTTTT+TGG + chr4_3:40085883-40085902 Msa0640780:intron 15.0%
!!! GTTTATTTTTTTTATTTGTG+TGG + chr4_3:40086080-40086099 Msa0640780:intron 15.0%
!!! TTTTAATAGTGATAGAAATA+TGG + chr4_3:40086297-40086316 Msa0640780:intron 15.0%
!!! AAAAGATATTTTAAAACGAA+GGG - chr4_3:40087234-40087253 None:intergenic 15.0%
!!! TAAAAGATATTTTAAAACGA+AGG - chr4_3:40087235-40087254 None:intergenic 15.0%
!! ATGAATTTATAAGGTTATAT+GGG + chr4_3:40087820-40087839 Msa0640780:intron 15.0%
!! TACAAATTGAAAATATGTTA+GGG - chr4_3:40087989-40088008 None:intergenic 15.0%
!! ATACAAATTGAAAATATGTT+AGG - chr4_3:40087990-40088009 None:intergenic 15.0%
!!! ATTGCATTTATTATTTTCAT+AGG - chr4_3:40089663-40089682 None:intergenic 15.0%
!! TATGAAAATAATAAATGCAA+TGG + chr4_3:40089662-40089681 Msa0640780:intron 15.0%
!! ATGAAAATAATAAATGCAAT+GGG + chr4_3:40089663-40089682 Msa0640780:intron 15.0%
!! ATATACTCTATATGAATATT+TGG + chr4_3:40089955-40089974 Msa0640780:CDS 15.0%
!! GAAATAATTTACAATTTGTA+AGG - chr4_3:40090525-40090544 None:intergenic 15.0%
!!! TTTTATGTTTATTGAAAAGC+GGG + chr4_3:40084361-40084380 Msa0640780:intron 20.0%
!!! CTTTTAAGTTAAAAACTGTT+TGG + chr4_3:40084516-40084535 Msa0640780:intron 20.0%
!! AGAGATAAAATATCAATGAT+AGG - chr4_3:40084911-40084930 None:intergenic 20.0%
!!! AGCTTTTTTAAAATTGTGTT+TGG + chr4_3:40085282-40085301 Msa0640780:intron 20.0%
!!! CTACTTATTTTTTACTTCTA+AGG - chr4_3:40085318-40085337 None:intergenic 20.0%
!! AAAATAAGTAGAAAATAAGG+AGG + chr4_3:40085327-40085346 Msa0640780:intron 20.0%
!! AAATAAGTAGAAAATAAGGA+GGG + chr4_3:40085328-40085347 Msa0640780:intron 20.0%
!! ATAATATTGACCAAATACAT+CGG + chr4_3:40085370-40085389 Msa0640780:intron 20.0%
!!! AATTATGTTTCGTCTAAAAT+AGG - chr4_3:40085667-40085686 None:intergenic 20.0%
!!! ATTATTTTTTATCCCAAAAG+TGG + chr4_3:40085782-40085801 Msa0640780:intron 20.0%
!!! TTTGGTTCTTAATAGTTTTT+AGG - chr4_3:40085966-40085985 None:intergenic 20.0%
!! TATTAAGAACCAAACTATTA+TGG + chr4_3:40085972-40085991 Msa0640780:intron 20.0%
!! ATTCAAATTCCATAATAGTT+TGG - chr4_3:40085984-40086003 None:intergenic 20.0%
!!! GTATGTGTTTATTTTTTTGA+GGG + chr4_3:40086108-40086127 Msa0640780:intron 20.0%
!! TTCAAAATTTGCAAAACATT+GGG + chr4_3:40086535-40086554 Msa0640780:five_prime_UTR 20.0%
!! GAATCAAATATTCATGAATT+CGG - chr4_3:40087128-40087147 None:intergenic 20.0%
!! ACATTGTATAATATATGCAA+AGG + chr4_3:40087518-40087537 Msa0640780:intron 20.0%
!!! TTCATGATGAATGTTTTTTT+TGG - chr4_3:40087616-40087635 None:intergenic 20.0%
!! CATGAATTTATAAGGTTATA+TGG + chr4_3:40087819-40087838 Msa0640780:intron 20.0%
!! CATAGAAGAAAAGTTATTTA+TGG + chr4_3:40088463-40088482 Msa0640780:CDS 20.0%
!! AAAAAAAACAAAACTATCAC+AGG + chr4_3:40088904-40088923 Msa0640780:intron 20.0%
!! AAAAGAAAGTTTACCAAAAA+CGG - chr4_3:40089170-40089189 None:intergenic 20.0%
!!! TTTTTGGTAAACTTTCTTTT+AGG + chr4_3:40089170-40089189 Msa0640780:CDS 20.0%
!!! TTTTGTAATTTGTTCAATAC+AGG + chr4_3:40089886-40089905 Msa0640780:intron 20.0%
!! TAATTTCCATTTAAACTTTG+TGG - chr4_3:40090265-40090284 None:intergenic 20.0%
!! TGTATTTGATCATATGTTAT+TGG + chr4_3:40090317-40090336 Msa0640780:CDS 20.0%
! TTCCACTCTATGAAAAATAT+TGG + chr4_3:40083976-40083995 Msa0640780:five_prime_UTR 25.0%
!! TACCAATATTTTTCATAGAG+TGG - chr4_3:40083981-40084000 None:intergenic 25.0%
! GTACAAACACAATTACAAAA+GGG + chr4_3:40083998-40084017 Msa0640780:five_prime_UTR 25.0%
! AATCAAAGCAATAAACCAAA+GGG - chr4_3:40084100-40084119 None:intergenic 25.0%
! AAATCAAAGCAATAAACCAA+AGG - chr4_3:40084101-40084120 None:intergenic 25.0%
! AATCAATAGTCAAATACCTT+TGG - chr4_3:40084212-40084231 None:intergenic 25.0%
! TTGTTATAATTGTTATCGGA+GGG - chr4_3:40084329-40084348 None:intergenic 25.0%
!! TTTGTTATAATTGTTATCGG+AGG - chr4_3:40084330-40084349 None:intergenic 25.0%
! TCACTATTGATCAAATGAAT+TGG - chr4_3:40084745-40084764 None:intergenic 25.0%
!!! TCATTTGTTTTTCTACTCTT+AGG + chr4_3:40084766-40084785 Msa0640780:intron 25.0%
! GTGTTCTCAACAAAAAAAAA+AGG - chr4_3:40084878-40084897 None:intergenic 25.0%
!! TTATAGACTAAGAGTATGTT+TGG - chr4_3:40085354-40085373 None:intergenic 25.0%
! GGAAAAATATGAGAAATTGA+GGG - chr4_3:40085722-40085741 None:intergenic 25.0%
! AGGAAAAATATGAGAAATTG+AGG - chr4_3:40085723-40085742 None:intergenic 25.0%
!! TGATTTTTAAACCCTAAAGT+GGG - chr4_3:40085875-40085894 None:intergenic 25.0%
!!! CGTATGTGTTTATTTTTTTG+AGG + chr4_3:40086107-40086126 Msa0640780:intron 25.0%
! CTTCAAAATTTGCAAAACAT+TGG + chr4_3:40086534-40086553 Msa0640780:five_prime_UTR 25.0%
!! AAAAGTACAATGTGCAAATT+AGG + chr4_3:40086570-40086589 Msa0640780:five_prime_UTR 25.0%
! AAAGTACAATGTGCAAATTA+GGG + chr4_3:40086571-40086590 Msa0640780:five_prime_UTR 25.0%
!!! TCATCACAAAAGTATCTAAA+TGG - chr4_3:40086599-40086618 None:intergenic 25.0%
! TGCATTATTATTAGTATCAC+TGG - chr4_3:40086727-40086746 None:intergenic 25.0%
! TCAATATTGGTGAACAAAAT+TGG - chr4_3:40087205-40087224 None:intergenic 25.0%
! CTTACATGATGCTAATTAAA+TGG + chr4_3:40087366-40087385 Msa0640780:intron 25.0%
!!! GTTATTTTCACTTTTCAATG+TGG - chr4_3:40087416-40087435 None:intergenic 25.0%
!!! CATTTTAAGGAGAATAAGTT+GGG - chr4_3:40087565-40087584 None:intergenic 25.0%
!! TTTCTTTTGACAGGTAATTA+AGG - chr4_3:40087769-40087788 None:intergenic 25.0%
!! TGAAAATATGTTAGGGTTTT+TGG - chr4_3:40087982-40088001 None:intergenic 25.0%
!! TCAAATGGCAATTTTGTATA+AGG + chr4_3:40088234-40088253 Msa0640780:CDS 25.0%
!!! ATCATAACATGACTCTTTTT+TGG + chr4_3:40088552-40088571 Msa0640780:intron 25.0%
! GTGGAGTTAAAACAAAAATT+TGG + chr4_3:40088622-40088641 Msa0640780:CDS 25.0%
! AACAAAACAAAACAAAACAC+AGG - chr4_3:40088831-40088850 None:intergenic 25.0%
!! ATGTAGCGGTTAATAAATTT+TGG + chr4_3:40088874-40088893 Msa0640780:intron 25.0%
!! ATTGATCTTGTTGGAATTTT+AGG + chr4_3:40088934-40088953 Msa0640780:intron 25.0%
!! AATAATATTGCTGTTAGCAA+AGG - chr4_3:40089343-40089362 None:intergenic 25.0%
! ACTATGTTTGATTCTTCAAT+AGG - chr4_3:40089600-40089619 None:intergenic 25.0%
! ATTGAATTTGTGGAAAATGT+AGG + chr4_3:40089742-40089761 Msa0640780:intron 25.0%
! TTGAATTTGTGGAAAATGTA+GGG + chr4_3:40089743-40089762 Msa0640780:intron 25.0%
!!! TAATTTGTTCAATACAGGAT+TGG + chr4_3:40089891-40089910 Msa0640780:intron 25.0%
!! AATTTGTTCAATACAGGATT+GGG + chr4_3:40089892-40089911 Msa0640780:intron 25.0%
!! GCAATATTTATCAAGTTGTT+TGG + chr4_3:40090232-40090251 Msa0640780:CDS 25.0%
! TTAAATGGAAATTATGAGTG+TGG + chr4_3:40090271-40090290 Msa0640780:CDS 25.0%
!! TATTTGAAACGGGTAAATTT+GGG + chr4_3:40090356-40090375 Msa0640780:CDS 25.0%
!! TTTTTGTATGTCTAAGTAGA+AGG + chr4_3:40090422-40090441 Msa0640780:CDS 25.0%
! TTTTTGTATGCACGTGTATA+CGG - chr4_3:40083911-40083930 None:intergenic 30.0%
GGTACAAACACAATTACAAA+AGG + chr4_3:40083997-40084016 Msa0640780:five_prime_UTR 30.0%
AGTTGTTCACATACATAACA+CGG - chr4_3:40084070-40084089 None:intergenic 30.0%
! TTTTAGACCTCGAAAAAGTA+GGG - chr4_3:40084407-40084426 None:intergenic 30.0%
AAATAAAAGGAATCTGGTGT+CGG + chr4_3:40085082-40085101 Msa0640780:intron 30.0%
GAACTTTACAACAACTTACA+CGG - chr4_3:40085188-40085207 None:intergenic 30.0%
! TTTACTTCTAAGGAGAAGTA+GGG - chr4_3:40085308-40085327 None:intergenic 30.0%
!! TTTTACTTCTAAGGAGAAGT+AGG - chr4_3:40085309-40085328 None:intergenic 30.0%
TACAATGCATAACATATGCA+AGG + chr4_3:40085566-40085585 Msa0640780:intron 30.0%
! TATGTTTCGTCTAAAATAGG+AGG - chr4_3:40085664-40085683 None:intergenic 30.0%
CCAAATAGGGAACAAAATAT+AGG - chr4_3:40085743-40085762 None:intergenic 30.0%
! CCTATATTTTGTTCCCTATT+TGG + chr4_3:40085740-40085759 Msa0640780:intron 30.0%
!! AGAGCAAAAATACCACTTTT+GGG - chr4_3:40085797-40085816 None:intergenic 30.0%
! TAGAGCAAAAATACCACTTT+TGG - chr4_3:40085798-40085817 None:intergenic 30.0%
! GTGATTTTTAAACCCTAAAG+TGG - chr4_3:40085876-40085895 None:intergenic 30.0%
!!! AATTTTTTGGGTCAAAACAC+AGG + chr4_3:40085896-40085915 Msa0640780:intron 30.0%
TTGCAAGAAATTGAAGTCAT+TGG + chr4_3:40086016-40086035 Msa0640780:intron 30.0%
TGCAAGAAATTGAAGTCATT+GGG + chr4_3:40086017-40086036 Msa0640780:intron 30.0%
ACAAACATAATTGATGAGTG+TGG + chr4_3:40086046-40086065 Msa0640780:intron 30.0%
ACAGTGTTTATTGTGATGAT+TGG - chr4_3:40086416-40086435 None:intergenic 30.0%
! AAAAACCGTTTGACATTTTG+TGG - chr4_3:40086786-40086805 None:intergenic 30.0%
! CAGTTTTCTCAAATACTAAC+CGG + chr4_3:40086901-40086920 Msa0640780:CDS 30.0%
!! CCATTTTAAGGAGAATAAGT+TGG - chr4_3:40087566-40087585 None:intergenic 30.0%
CCAACTTATTCTCCTTAAAA+TGG + chr4_3:40087563-40087582 Msa0640780:intron 30.0%
! GCTCAAAATTCTCCATTTTA+AGG - chr4_3:40087578-40087597 None:intergenic 30.0%
GATTACTTGCAAAAATAACC+TGG + chr4_3:40087685-40087704 Msa0640780:intron 30.0%
! TAGACATGTTTTCTTTTGAC+AGG - chr4_3:40087778-40087797 None:intergenic 30.0%
GCTCACTTCATGAATTTATA+AGG + chr4_3:40087811-40087830 Msa0640780:intron 30.0%
TATATGGGAGAACAAAGAAA+TGG + chr4_3:40087835-40087854 Msa0640780:CDS 30.0%
AGAATTTACCAACACATTCA+TGG - chr4_3:40087939-40087958 None:intergenic 30.0%
TTATTCAGACAAAAGTCTCT+GGG + chr4_3:40088035-40088054 Msa0640780:intron 30.0%
AAGGCATGCATAACAATATT+TGG - chr4_3:40088118-40088137 None:intergenic 30.0%
! ATTGCCATTTGATTTCCAAA+AGG - chr4_3:40088226-40088245 None:intergenic 30.0%
TAATGTAAACTACAGTACCT+TGG + chr4_3:40088388-40088407 Msa0640780:intron 30.0%
!! AACATTGGTTTGAGAGTTTA+GGG - chr4_3:40088581-40088600 None:intergenic 30.0%
AGGAAACAACTTATCTAAAG+TGG + chr4_3:40088603-40088622 Msa0640780:intron 30.0%
! ACAAAAATTTGGAGCTTCAA+AGG + chr4_3:40088633-40088652 Msa0640780:CDS 30.0%
AAGGAACTTATGAAATCAGT+TGG + chr4_3:40088652-40088671 Msa0640780:CDS 30.0%
ATCAATATCACTAGCTGAAT+AGG - chr4_3:40088698-40088717 None:intergenic 30.0%
GCTTCTTATGGATATGAATA+CGG + chr4_3:40088751-40088770 Msa0640780:CDS 30.0%
!!! TTTTGTTTTGTTTGCTTGCT+CGG + chr4_3:40088839-40088858 Msa0640780:intron 30.0%
GGAAATTGAATTGATCTTGT+TGG + chr4_3:40088925-40088944 Msa0640780:intron 30.0%
!! ATCTTGTTGGAATTTTAGGT+GGG + chr4_3:40088938-40088957 Msa0640780:intron 30.0%
ATGACAGAAGATATACTAAC+TGG + chr4_3:40088977-40088996 Msa0640780:CDS 30.0%
TGACAGAAGATATACTAACT+GGG + chr4_3:40088978-40088997 Msa0640780:CDS 30.0%
!!! GGCAATTTTTAGCTTATATG+TGG + chr4_3:40089191-40089210 Msa0640780:CDS 30.0%
TTATATGTGGATCATGAACT+GGG + chr4_3:40089204-40089223 Msa0640780:CDS 30.0%
! ACACTTTTAATATGAGGTGT+CGG - chr4_3:40089400-40089419 None:intergenic 30.0%
! TCGAACACACTTTTAATATG+AGG - chr4_3:40089406-40089425 None:intergenic 30.0%
TAGTGTTCATGTATGTATGT+CGG + chr4_3:40089531-40089550 Msa0640780:intron 30.0%
ATTTGTTCAATACAGGATTG+GGG + chr4_3:40089893-40089912 Msa0640780:intron 30.0%
TATATTCCTACTGCAATAGT+TGG + chr4_3:40089920-40089939 Msa0640780:CDS 30.0%
ATATTCCTACTGCAATAGTT+GGG + chr4_3:40089921-40089940 Msa0640780:CDS 30.0%
AGAATAACATCTATGAATGC+TGG + chr4_3:40090025-40090044 Msa0640780:CDS 30.0%
ACTGTTCTACTCAAATTGTT+AGG + chr4_3:40090064-40090083 Msa0640780:CDS 30.0%
GATCAACATGATAAGAATGT+TGG + chr4_3:40090142-40090161 Msa0640780:CDS 30.0%
TTTCAGCCACAAAGTTTAAA+TGG + chr4_3:40090256-40090275 Msa0640780:CDS 30.0%
TCAAATAGTCCTCTCAAAAA+TGG - chr4_3:40090343-40090362 None:intergenic 30.0%
TTTGAGAGGACTATTTGAAA+CGG + chr4_3:40090345-40090364 Msa0640780:CDS 30.0%
! CTATTTGAAACGGGTAAATT+TGG + chr4_3:40090355-40090374 Msa0640780:CDS 30.0%
ATCACCTTAGCTAAGATCAA+TGG + chr4_3:40083938-40083957 Msa0640780:five_prime_UTR 35.0%
!! TTGCTTTGATTTGCGAAACA+TGG + chr4_3:40084109-40084128 Msa0640780:five_prime_UTR 35.0%
AAACATGGTTCACCTTATCT+TGG + chr4_3:40084124-40084143 Msa0640780:five_prime_UTR 35.0%
CAATAGTCAAATACCTTTGG+AGG - chr4_3:40084209-40084228 None:intergenic 35.0%
ATTGAAAAGCGGGTGTATTT+AGG + chr4_3:40084371-40084390 Msa0640780:intron 35.0%
TTGAAAAGCGGGTGTATTTA+GGG + chr4_3:40084372-40084391 Msa0640780:intron 35.0%
! CTTTTAGACCTCGAAAAAGT+AGG - chr4_3:40084408-40084427 None:intergenic 35.0%
!! AAAAGAAAAAGTGTCCCATG+TGG + chr4_3:40085130-40085149 Msa0640780:intron 35.0%
!! AAAGAAAAAGTGTCCCATGT+GGG + chr4_3:40085131-40085150 Msa0640780:intron 35.0%
CGTTGAATAACCGATGTATT+TGG - chr4_3:40085383-40085402 None:intergenic 35.0%
TGCATAACATATGCAAGGTT+CGG + chr4_3:40085571-40085590 Msa0640780:intron 35.0%
TTGGGTGAAAAGACCAAATA+GGG - chr4_3:40085756-40085775 None:intergenic 35.0%
TTTGGGTGAAAAGACCAAAT+AGG - chr4_3:40085757-40085776 None:intergenic 35.0%
ACACACAGAATTATAACCGT+TGG + chr4_3:40085838-40085857 Msa0640780:intron 35.0%
CACACAGAATTATAACCGTT+GGG + chr4_3:40085839-40085858 Msa0640780:intron 35.0%
GACCAAAAATTCCCACTTTA+GGG + chr4_3:40085861-40085880 Msa0640780:intron 35.0%
! AACCCTAAAGTGGGAATTTT+TGG - chr4_3:40085866-40085885 None:intergenic 35.0%
GTGTTTATTGTGATGATTGG+TGG - chr4_3:40086413-40086432 None:intergenic 35.0%
! TGAAGAGCATAGAAGATTAG+AGG - chr4_3:40086509-40086528 None:intergenic 35.0%
TTGTCTGAATTCTTGGTCAT+TGG - chr4_3:40086636-40086655 None:intergenic 35.0%
ACCAAGAATTCAGACAAGAA+TGG + chr4_3:40086639-40086658 Msa0640780:five_prime_UTR 35.0%
ACCATTCTTGTCTGAATTCT+TGG - chr4_3:40086643-40086662 None:intergenic 35.0%
ACAAGAATGGTTACAGATGA+AGG + chr4_3:40086652-40086671 Msa0640780:exon 35.0%
TCTGACCACAAAATGTCAAA+CGG + chr4_3:40086778-40086797 Msa0640780:intron 35.0%
CATACATATCCTGTCAACAA+GGG - chr4_3:40086815-40086834 None:intergenic 35.0%
TCATACATATCCTGTCAACA+AGG - chr4_3:40086816-40086835 None:intergenic 35.0%
TCTTAGCCGTAAAATAGATG+TGG + chr4_3:40086839-40086858 Msa0640780:CDS 35.0%
! TTGGGTCCACATCTATTTTA+CGG - chr4_3:40086848-40086867 None:intergenic 35.0%
! GTAAGCTTGGGATAGATTTT+GGG - chr4_3:40086866-40086885 None:intergenic 35.0%
! AGTAAGCTTGGGATAGATTT+TGG - chr4_3:40086867-40086886 None:intergenic 35.0%
AAATCATCCAGCCATAATCA+AGG + chr4_3:40086926-40086945 Msa0640780:CDS 35.0%
CACAAACAGTACCTTGATTA+TGG - chr4_3:40086940-40086959 None:intergenic 35.0%
!! CATAATCAAGGTACTGTTTG+TGG + chr4_3:40086938-40086957 Msa0640780:intron 35.0%
TATTCATGAATTCGGAACGT+TGG - chr4_3:40087120-40087139 None:intergenic 35.0%
! CGAAGGGTTTGTTTCAATAT+TGG - chr4_3:40087218-40087237 None:intergenic 35.0%
TGTCAATTGAGCTAAACTCA+CGG - chr4_3:40087495-40087514 None:intergenic 35.0%
! TGAGTTTAGCTCAATTGACA+AGG + chr4_3:40087495-40087514 Msa0640780:intron 35.0%
TACTTGCAAAAACTTTGCAC+AGG + chr4_3:40087711-40087730 Msa0640780:intron 35.0%
AACAAAGAAATGGCTGAAGA+TGG + chr4_3:40087845-40087864 Msa0640780:CDS 35.0%
CTGGATATGTAGATCAAATG+TGG - chr4_3:40087875-40087894 None:intergenic 35.0%
TTGAAATGATGTGGTTGCTT+TGG - chr4_3:40087908-40087927 None:intergenic 35.0%
GTTATTCAGACAAAAGTCTC+TGG + chr4_3:40088034-40088053 Msa0640780:intron 35.0%
AGTGTAGCATAGAATTGTTG+GGG - chr4_3:40088193-40088212 None:intergenic 35.0%
GAGTGTAGCATAGAATTGTT+GGG - chr4_3:40088194-40088213 None:intergenic 35.0%
TGAGTGTAGCATAGAATTGT+TGG - chr4_3:40088195-40088214 None:intergenic 35.0%
!! CGATCCTTTTGGAAATCAAA+TGG + chr4_3:40088219-40088238 Msa0640780:CDS 35.0%
AGTTATTTATGGTCTCTCTC+CGG + chr4_3:40088474-40088493 Msa0640780:CDS 35.0%
!! CAACATTGGTTTGAGAGTTT+AGG - chr4_3:40088582-40088601 None:intergenic 35.0%
! TAAGTTGTTTCCTGCAACAT+TGG - chr4_3:40088596-40088615 None:intergenic 35.0%
TGATGTTAACAAAGCTGTTG+AGG + chr4_3:40088714-40088733 Msa0640780:CDS 35.0%
! GCTATTCATGTTGCTTCTTA+TGG + chr4_3:40088739-40088758 Msa0640780:CDS 35.0%
! GATCTTGTTGGAATTTTAGG+TGG + chr4_3:40088937-40088956 Msa0640780:intron 35.0%
TGACGATACACAAAAAAGGT+TGG + chr4_3:40089002-40089021 Msa0640780:CDS 35.0%
TATGGCTCAACATAAGAGAT+GGG + chr4_3:40089093-40089112 Msa0640780:CDS 35.0%
CTTATATGTGGATCATGAAC+TGG + chr4_3:40089203-40089222 Msa0640780:CDS 35.0%
TATATGTGGATCATGAACTG+GGG + chr4_3:40089205-40089224 Msa0640780:CDS 35.0%
! TGGTAATGATGCAATATGCA+AGG - chr4_3:40089267-40089286 None:intergenic 35.0%
TGCTGTTAGCAAAGGAAAAA+TGG - chr4_3:40089335-40089354 None:intergenic 35.0%
CACATGTTTAAGTGTGATGT+TGG - chr4_3:40089440-40089459 None:intergenic 35.0%
GTAAAATTGATCTGCAGAGT+TGG - chr4_3:40089830-40089849 None:intergenic 35.0%
TAAATCCCAACTATTGCAGT+AGG - chr4_3:40089929-40089948 None:intergenic 35.0%
CTATATGAATATTTGGCCTC+AGG + chr4_3:40089962-40089981 Msa0640780:CDS 35.0%
TGTCAATTGCAACGATAAGA+TGG - chr4_3:40090212-40090231 None:intergenic 35.0%
TGGAAATTATGAGTGTGGTT+TGG + chr4_3:40090276-40090295 Msa0640780:CDS 35.0%
!!! TGTTATTGGCCATTTTTGAG+AGG + chr4_3:40090331-40090350 Msa0640780:CDS 35.0%
! TTGAGAGGACTATTTGAAAC+GGG + chr4_3:40090346-40090365 Msa0640780:CDS 35.0%
CCTTTGCATATTGTAGACAA+AGG - chr4_3:40090385-40090404 None:intergenic 35.0%
CCTTTGTCTACAATATGCAA+AGG + chr4_3:40090382-40090401 Msa0640780:CDS 35.0%
TTGGCCATTGATCTTAGCTA+AGG - chr4_3:40083945-40083964 None:intergenic 40.0%
!!! ATCCTCCTTTTGTTGTTGCT+TGG + chr4_3:40084041-40084060 Msa0640780:five_prime_UTR 40.0%
AACCAAGCAACAACAAAAGG+AGG - chr4_3:40084046-40084065 None:intergenic 40.0%
GGTAACCAAGCAACAACAAA+AGG - chr4_3:40084049-40084068 None:intergenic 40.0%
GAACAACTACTCTATCCCTT+TGG + chr4_3:40084082-40084101 Msa0640780:five_prime_UTR 40.0%
GACGGTGAAAATCCAAGATA+AGG - chr4_3:40084139-40084158 None:intergenic 40.0%
!!! GTCAGGGTTGGTTTTGATAA+AGG - chr4_3:40084181-40084200 None:intergenic 40.0%
! TCAAATACCTTTGGAGGAGA+CGG - chr4_3:40084203-40084222 None:intergenic 40.0%
CTTTACAACAACTTACACGG+AGG - chr4_3:40085185-40085204 None:intergenic 40.0%
GCATAACATATGCAAGGTTC+GGG + chr4_3:40085572-40085591 Msa0640780:intron 40.0%
AACACTTAAAGCCCGTGTTT+GGG - chr4_3:40085606-40085625 None:intergenic 40.0%
TAACACTTAAAGCCCGTGTT+TGG - chr4_3:40085607-40085626 None:intergenic 40.0%
GGACCAAAAATTCCCACTTT+AGG + chr4_3:40085860-40085879 Msa0640780:intron 40.0%
TTTGGGTCAAAACACAGGTT+AGG + chr4_3:40085901-40085920 Msa0640780:intron 40.0%
GTCACAAATATATCCACTGC+TGG - chr4_3:40086368-40086387 None:intergenic 40.0%
! TAACAAGCTAGCTTGTGAGA+TGG - chr4_3:40086464-40086483 None:intergenic 40.0%
! GCTTGTTACGTTTCTGATGA+TGG + chr4_3:40086476-40086495 Msa0640780:five_prime_UTR 40.0%
! TTTGTTTCTCCCTTGTTGAC+AGG + chr4_3:40086803-40086822 Msa0640780:intron 40.0%
TCTATCCCAAGCTTACTTGA+AGG + chr4_3:40086870-40086889 Msa0640780:CDS 40.0%
ACTCTCCTTCAAGTAAGCTT+GGG - chr4_3:40086878-40086897 None:intergenic 40.0%
AACTCTCCTTCAAGTAAGCT+TGG - chr4_3:40086879-40086898 None:intergenic 40.0%
! TTATGGCTGGATGATTTGTC+CGG - chr4_3:40086923-40086942 None:intergenic 40.0%
AACAGTACCTTGATTATGGC+TGG - chr4_3:40086936-40086955 None:intergenic 40.0%
! ATGGAGAATTTTGAGCAGCT+TGG + chr4_3:40087582-40087601 Msa0640780:intron 40.0%
CAACCACATCATTTCAAAGC+CGG + chr4_3:40087911-40087930 Msa0640780:CDS 40.0%
CAATCCACGTTCAACATGAA+GGG - chr4_3:40088076-40088095 None:intergenic 40.0%
ACAATCCACGTTCAACATGA+AGG - chr4_3:40088077-40088096 None:intergenic 40.0%
! TGCATTTTGCTTGACTCCAA+GGG + chr4_3:40088139-40088158 Msa0640780:CDS 40.0%
! ACACTCAAAGACGATCCTTT+TGG + chr4_3:40088208-40088227 Msa0640780:CDS 40.0%
AACTCTCAAACCAATGTTGC+AGG + chr4_3:40088583-40088602 Msa0640780:intron 40.0%
GAAATCAGTTGGTCATGCTT+TGG + chr4_3:40088663-40088682 Msa0640780:CDS 40.0%
!! TTGGTCATGCTTTGGAAGAT+AGG + chr4_3:40088671-40088690 Msa0640780:CDS 40.0%
TATGGATATGAATACGGCAC+TGG + chr4_3:40088757-40088776 Msa0640780:CDS 40.0%
!! TGTTGGAATTTTAGGTGGGT+TGG + chr4_3:40088942-40088961 Msa0640780:intron 40.0%
!!! TTTTAGGTGGGTTGGATGTA+TGG + chr4_3:40088950-40088969 Msa0640780:intron 40.0%
TTATGTTGAGCCATACAGGT+GGG - chr4_3:40089088-40089107 None:intergenic 40.0%
TCTCTTATGTTGAGCCATAC+AGG - chr4_3:40089092-40089111 None:intergenic 40.0%
GTATGGCTCAACATAAGAGA+TGG + chr4_3:40089092-40089111 Msa0640780:CDS 40.0%
CCAAAAACGGCAGCAAAAAT+AGG - chr4_3:40089157-40089176 None:intergenic 40.0%
!!! CCTATTTTTGCTGCCGTTTT+TGG + chr4_3:40089154-40089173 Msa0640780:CDS 40.0%
GCATAACATACTTGAGCAAC+TGG - chr4_3:40089238-40089257 None:intergenic 40.0%
!! TGTTTTTCAATGCTCACCTC+TGG - chr4_3:40089304-40089323 None:intergenic 40.0%
TGCTTTAATTGACAGTCCTG+AGG - chr4_3:40089981-40090000 None:intergenic 40.0%
CAGGACTGTCAATTAAAGCA+TGG + chr4_3:40089981-40090000 Msa0640780:CDS 40.0%
GACTGTCAATTAAAGCATGG+TGG + chr4_3:40089984-40090003 Msa0640780:CDS 40.0%
! AAGCATGGTGGAACAATCAA+AGG + chr4_3:40089996-40090015 Msa0640780:CDS 40.0%
TCTATGAATGCTGGATTCTG+TGG + chr4_3:40090034-40090053 Msa0640780:CDS 40.0%
TCATGTTGATCATCCCTAGA+GGG - chr4_3:40090133-40090152 None:intergenic 40.0%
ATCATGTTGATCATCCCTAG+AGG - chr4_3:40090134-40090153 None:intergenic 40.0%
AACGATAAGATGGTAGTTCC+TGG - chr4_3:40090202-40090221 None:intergenic 40.0%
TGCACTTGTGGATTCTTGTT+TGG + chr4_3:40090612-40090631 Msa0640780:three_prime_UTR 40.0%
! GCACTTGTGGATTCTTGTTT+GGG + chr4_3:40090613-40090632 Msa0640780:three_prime_UTR 40.0%
! TTGTGGATTCTTGTTTGGGA+TGG + chr4_3:40090617-40090636 Msa0640780:three_prime_UTR 40.0%
! TGTGGATTCTTGTTTGGGAT+GGG + chr4_3:40090618-40090637 Msa0640780:three_prime_UTR 40.0%
TTGTATGCACGTGTATACGG+TGG - chr4_3:40083908-40083927 None:intergenic 45.0%
GAGTGGAAGAGAGTTTGAGT+TGG - chr4_3:40083964-40083983 None:intergenic 45.0%
! TTTTCACCGTCTCCACTCAA+TGG + chr4_3:40084148-40084167 Msa0640780:five_prime_UTR 45.0%
!!! GGGTTGGTTTTGATAAAGGC+TGG - chr4_3:40084177-40084196 None:intergenic 45.0%
! GGGTGTATTTAGGGTGTGTT+TGG + chr4_3:40084381-40084400 Msa0640780:intron 45.0%
!!! TGTTTGGCCCTACTTTTTCG+AGG + chr4_3:40084397-40084416 Msa0640780:intron 45.0%
CAACAACTTACACGGAGGTT+AGG - chr4_3:40085180-40085199 None:intergenic 45.0%
ACACTTAAAGCCCGTGTTTG+GGG - chr4_3:40085605-40085624 None:intergenic 45.0%
!!! GTGGGAATTTTTGGTCCCAA+CGG - chr4_3:40085857-40085876 None:intergenic 45.0%
!! TCAAGGTACTGTTTGTGGTC+CGG + chr4_3:40086943-40086962 Msa0640780:intron 45.0%
TTCAAATGCGCGAATGTGTG+TGG - chr4_3:40086979-40086998 None:intergenic 45.0%
AAAGGTTGTGATTCGACCCT+CGG + chr4_3:40087536-40087555 Msa0640780:intron 45.0%
! AGAATAAGTTGGGTGTCCGA+GGG - chr4_3:40087555-40087574 None:intergenic 45.0%
! AAGTTTTTGCAAGTAGCGCC+AGG - chr4_3:40087706-40087725 None:intergenic 45.0%
TACCAACACATTCATGGCAC+CGG - chr4_3:40087933-40087952 None:intergenic 45.0%
! GTTCAACATGAAGGGTGCAT+TGG - chr4_3:40088068-40088087 None:intergenic 45.0%
GGAGTCAAGCAAAATGCACA+AGG - chr4_3:40088137-40088156 None:intergenic 45.0%
! GTGCATTTTGCTTGACTCCA+AGG + chr4_3:40088138-40088157 Msa0640780:CDS 45.0%
! GCATTTTGCTTGACTCCAAG+GGG + chr4_3:40088140-40088159 Msa0640780:CDS 45.0%
! AGCTACTTCTTTTTGCCCCT+TGG - chr4_3:40088158-40088177 None:intergenic 45.0%
AAACTACAGTACCTTGGAGC+AGG + chr4_3:40088394-40088413 Msa0640780:intron 45.0%
GGACTCCAAGGAATGTTCTA+CGG + chr4_3:40088424-40088443 Msa0640780:CDS 45.0%
TTCCTCCGTAGAACATTCCT+TGG - chr4_3:40088432-40088451 None:intergenic 45.0%
TCTCCGGATGACGTAGAAAA+GGG + chr4_3:40088490-40088509 Msa0640780:CDS 45.0%
! GTACCCTTTTCTACGTCATC+CGG - chr4_3:40088496-40088515 None:intergenic 45.0%
!! ATATGAATACGGCACTGGCT+GGG + chr4_3:40088762-40088781 Msa0640780:CDS 45.0%
GGGCTGACGATACACAAAAA+AGG + chr4_3:40088998-40089017 Msa0640780:CDS 45.0%
AATTGGAGCACAACCTGTGA+AGG - chr4_3:40089059-40089078 None:intergenic 45.0%
ACAGGTTGTGCTCCAATTGA+TGG + chr4_3:40089061-40089080 Msa0640780:CDS 45.0%
TATGTTGAGCCATACAGGTG+GGG - chr4_3:40089087-40089106 None:intergenic 45.0%
CTTATGTTGAGCCATACAGG+TGG - chr4_3:40089089-40089108 None:intergenic 45.0%
GAAGATCTCAAGCATTCCTG+TGG - chr4_3:40089119-40089138 None:intergenic 45.0%
TGGATCATGAACTGGGGATT+TGG + chr4_3:40089211-40089230 Msa0640780:CDS 45.0%
AGAAAGATCTTCCTCCCTCT+AGG + chr4_3:40090116-40090135 Msa0640780:CDS 45.0%
GAAAGATCTTCCTCCCTCTA+GGG + chr4_3:40090117-40090136 Msa0640780:CDS 45.0%
!!! GAGTCGTTAGTTTTCTTGCC+AGG + chr4_3:40090181-40090200 Msa0640780:CDS 45.0%
CTTGGACAAGTGCTACACTT+TGG - chr4_3:40090581-40090600 None:intergenic 45.0%
!! TAAGAAAATAAATATTAATT+AGG - chr4_3:40084288-40084307 None:intergenic 5.0%
!! ATATTTATCATAAAAATATA+CGG + chr4_3:40084844-40084863 Msa0640780:intron 5.0%
!!! TTTTTTTTTTTTTAACATTT+TGG - chr4_3:40084996-40085015 None:intergenic 5.0%
!! AACAAAATAAAATAAATAAA+AGG + chr4_3:40085069-40085088 Msa0640780:intron 5.0%
!!! ATAAAAAATAATTACTTTTT+GGG - chr4_3:40085774-40085793 None:intergenic 5.0%
!!! TTTATTTTTTAATATAAGAA+AGG + chr4_3:40086687-40086706 Msa0640780:intron 5.0%
TGGACTCCATTGAGTGGAGA+CGG - chr4_3:40084157-40084176 None:intergenic 50.0%
AAAGGCTGGACTCCATTGAG+TGG - chr4_3:40084163-40084182 None:intergenic 50.0%
TGTCCCATGTGGGAATCGAT+GGG + chr4_3:40085141-40085160 Msa0640780:intron 50.0%
!! TCACCCATCGATTCCCACAT+GGG - chr4_3:40085147-40085166 None:intergenic 50.0%
!! TTCACCCATCGATTCCCACA+TGG - chr4_3:40085148-40085167 None:intergenic 50.0%
CTTCGTGAGCTTAGCTCAGT+TGG + chr4_3:40085539-40085558 Msa0640780:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+AGG + chr4_3:40085543-40085562 Msa0640780:intron 50.0%
TGTGCAAGAACTTCCAGCAG+TGG + chr4_3:40086352-40086371 Msa0640780:five_prime_UTR 50.0%
TGTGTGTGGATGCTAACAGC+CGG - chr4_3:40086965-40086984 None:intergenic 50.0%
! GAGAATAAGTTGGGTGTCCG+AGG - chr4_3:40087556-40087575 None:intergenic 50.0%
!! GCACCGGCTTTGAAATGATG+TGG - chr4_3:40087917-40087936 None:intergenic 50.0%
TGCACCCTTCATGTTGAACG+TGG + chr4_3:40088069-40088088 Msa0640780:CDS 50.0%
! TACCTTGGAGCAGGATTAGC+AGG + chr4_3:40088403-40088422 Msa0640780:CDS 50.0%
CTCCAAGGAATGTTCTACGG+AGG + chr4_3:40088427-40088446 Msa0640780:CDS 50.0%
CTCTCCGGATGACGTAGAAA+AGG + chr4_3:40088489-40088508 Msa0640780:CDS 50.0%
!! GATATGAATACGGCACTGGC+TGG + chr4_3:40088761-40088780 Msa0640780:CDS 50.0%
!! TATGAATACGGCACTGGCTG+GGG + chr4_3:40088763-40088782 Msa0640780:CDS 50.0%
!! CCTGTGAAGGCTATTGGTTC+TGG - chr4_3:40089046-40089065 None:intergenic 50.0%
CCAGAACCAATAGCCTTCAC+AGG + chr4_3:40089043-40089062 Msa0640780:CDS 50.0%
GCACAACCTGTGAAGGCTAT+TGG - chr4_3:40089052-40089071 None:intergenic 50.0%
ATACAGGTGGGGCCATCAAT+TGG - chr4_3:40089076-40089095 None:intergenic 50.0%
! AATTGATGGCCCCACCTGTA+TGG + chr4_3:40089075-40089094 Msa0640780:CDS 50.0%
CAACATAAGAGATGGGCCAC+AGG + chr4_3:40089100-40089119 Msa0640780:CDS 50.0%
CTCTGGCAGGAAATAGGAGT+TGG - chr4_3:40089287-40089306 None:intergenic 50.0%
CAACTCCTATTTCCTGCCAG+AGG + chr4_3:40089285-40089304 Msa0640780:intron 50.0%
TTTCAATGCTCACCTCTGGC+AGG - chr4_3:40089300-40089319 None:intergenic 50.0%
TGTTGATCATCCCTAGAGGG+AGG - chr4_3:40090130-40090149 None:intergenic 50.0%
AAGTGCAGTGCTTGCAGTCT+TGG - chr4_3:40090599-40090618 None:intergenic 50.0%
TGCACGTGTATACGGTGGTG+AGG - chr4_3:40083903-40083922 None:intergenic 55.0%
! ACCTTTGGAGGAGACGGTCA+GGG - chr4_3:40084197-40084216 None:intergenic 55.0%
! TACCTTTGGAGGAGACGGTC+AGG - chr4_3:40084198-40084217 None:intergenic 55.0%
GTGTCCCATGTGGGAATCGA+TGG + chr4_3:40085140-40085159 Msa0640780:intron 55.0%
GGGAATCGATGGGTGAACCA+CGG + chr4_3:40085151-40085170 Msa0640780:intron 55.0%
CGGGATTCGAACCCCAAACA+CGG + chr4_3:40085591-40085610 Msa0640780:intron 55.0%
GGGATTCGAACCCCAAACAC+GGG + chr4_3:40085592-40085611 Msa0640780:intron 55.0%
!! AGCCGGTGCCATGAATGTGT+TGG + chr4_3:40087928-40087947 Msa0640780:CDS 55.0%
GTCCTGCTAATCCTGCTCCA+AGG - chr4_3:40088408-40088427 None:intergenic 55.0%
! GCAGGATTAGCAGGACTCCA+AGG + chr4_3:40088412-40088431 Msa0640780:CDS 55.0%
GGTGCGACTTGCAGATGTAG+CGG + chr4_3:40088860-40088879 Msa0640780:intron 55.0%
GCTCACCTCTGGCAGGAAAT+AGG - chr4_3:40089293-40089312 None:intergenic 55.0%
! GACTGCAAGCACTGCACTTG+TGG + chr4_3:40090600-40090619 Msa0640780:three_prime_UTR 55.0%
TTGGAGGAGACGGTCAGGGT+TGG - chr4_3:40084193-40084212 None:intergenic 60.0%
ACCCTGACCGTCTCCTCCAA+AGG + chr4_3:40084193-40084212 Msa0640780:five_prime_UTR 60.0%
ACACGGAGGTTAGGCAACCG+TGG - chr4_3:40085171-40085190 None:intergenic 60.0%
!! CGGCACTGGCTGGGGTAAAC+AGG + chr4_3:40088771-40088790 Msa0640780:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40083898 40090656 40083898 ID=Msa0640780;Name=Msa0640780
chr4_3 mRNA 40083898 40090656 40083898 ID=Msa0640780-mRNA-1;Parent=Msa0640780;Name=Msa0640780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=679|0.87|0.88|1|0.87|0.77|9|197|532
chr4_3 exon 40083898 40084214 40083898 ID=Msa0640780-mRNA-1:exon:9003;Parent=Msa0640780-mRNA-1
chr4_3 exon 40086306 40086673 40086306 ID=Msa0640780-mRNA-1:exon:9004;Parent=Msa0640780-mRNA-1
chr4_3 exon 40086825 40086947 40086825 ID=Msa0640780-mRNA-1:exon:9005;Parent=Msa0640780-mRNA-1
chr4_3 exon 40087833 40087949 40087833 ID=Msa0640780-mRNA-1:exon:9006;Parent=Msa0640780-mRNA-1
chr4_3 exon 40088043 40088255 40088043 ID=Msa0640780-mRNA-1:exon:9007;Parent=Msa0640780-mRNA-1
chr4_3 exon 40088403 40088511 40088403 ID=Msa0640780-mRNA-1:exon:9008;Parent=Msa0640780-mRNA-1
chr4_3 exon 40088605 40088792 40088605 ID=Msa0640780-mRNA-1:exon:9009;Parent=Msa0640780-mRNA-1
chr4_3 exon 40088956 40089246 40088956 ID=Msa0640780-mRNA-1:exon:9010;Parent=Msa0640780-mRNA-1
chr4_3 exon 40089908 40090656 40089908 ID=Msa0640780-mRNA-1:exon:9011;Parent=Msa0640780-mRNA-1
chr4_3 five_prime_UTR 40083898 40084214 40083898 ID=Msa0640780-mRNA-1:five_prime_utr;Parent=Msa0640780-mRNA-1
chr4_3 five_prime_UTR 40086306 40086667 40086306 ID=Msa0640780-mRNA-1:five_prime_utr;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40086668 40086673 40086668 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40086825 40086947 40086825 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40087833 40087949 40087833 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40088043 40088255 40088043 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40088403 40088511 40088403 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40088605 40088792 40088605 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40088956 40089246 40088956 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 CDS 40089908 40090459 40089908 ID=Msa0640780-mRNA-1:cds;Parent=Msa0640780-mRNA-1
chr4_3 three_prime_UTR 40090460 40090656 40090460 ID=Msa0640780-mRNA-1:three_prime_utr;Parent=Msa0640780-mRNA-1
Gene Sequence

>Msa0640780

ATGAAGGATATGTATGAAAATCTTAGCCGTAAAATAGATGTGGACCCAAAATCTATCCCAAGCTTACTTGAAGGAGAGTTTGCAGTTTTCTCAAATACTAACCGGACAAATCATCCAGCCATAATCAAGGTTATATGGGAGAACAAAGAAATGGCTGAAGATGGATTGCCACATTTGATCTACATATCCAGAGAAAAGAGGCCAAAGCAACCACATCATTTCAAAGCCGGTGCCATGAATGTGTTGACAAAAGTCTCTGGGTTGATTACCAATGCACCCTTCATGTTGAACGTGGATTGTGACATGTTTGTAAATAATCCAAATATTGTTATGCATGCCTTGTGCATTTTGCTTGACTCCAAGGGGCAAAAAGAAGTAGCTTTTGCTCAATGTCCCCAACAATTCTATGCTACACTCAAAGACGATCCTTTTGGAAATCAAATGGCAATTTTGTATAAGTACCTTGGAGCAGGATTAGCAGGACTCCAAGGAATGTTCTACGGAGGAACAAACTGCTTTCATAGAAGAAAAGTTATTTATGGTCTCTCTCCGGATGACGTAGAAAAGGGAAACAACTTATCTAAAGTGGAGTTAAAACAAAAATTTGGAGCTTCAAAGGAACTTATGAAATCAGTTGGTCATGCTTTGGAAGATAGGACCTATTCAGCTAGTGATATTGATGTTAACAAAGCTGTTGAGGAAGCTATTCATGTTGCTTCTTATGGATATGAATACGGCACTGGCTGGGGTAAACAGGTGGGTTGGATGTATGGAACAATGACAGAAGATATACTAACTGGGCTGACGATACACAAAAAAGGTTGGAGATCAGAATTATGTACACCAGAACCAATAGCCTTCACAGGTTGTGCTCCAATTGATGGCCCCACCTGTATGGCTCAACATAAGAGATGGGCCACAGGAATGCTTGAGATCTTCTTTAGCAAACATTGTCCTATTTTTGCTGCCGTTTTTGGTAAACTTTCTTTTAGGCAATTTTTAGCTTATATGTGGATCATGAACTGGGGATTTGGTCCAGTTGCTCAAGATTGGGGCATATATATTCCTACTGCAATAGTTGGGATTTACAAAGTATATACTCTATATGAATATTTGGCCTCAGGACTGTCAATTAAAGCATGGTGGAACAATCAAAGGATGTCGAGAATAACATCTATGAATGCTGGATTCTGTGGATTTATTACTGTTCTACTCAAATTGTTAGGAATATCTAACACTGTTTTTGACATAACAAAGAAAGATCTTCCTCCCTCTAGGGATGATCAACATGATAAGAATGTTGGTAGATACACTTTCAACGAGTCGTTAGTTTTCTTGCCAGGAACTACCATCTTATCGTTGCAATTGACAGCAATATTTATCAAGTTGTTTGGATTTCAGCCACAAAGTTTAAATGGAAATTATGAGTGTGGTTTGGCTGAAATGTTGATTAGTGTGTATTTGATCATATGTTATTGGCCATTTTTGAGAGGACTATTTGAAACGGGTAAATTTGGGATTCCTTTGTCTACAATATGCAAAGGAGCAACTTTGACATGTATTTTTGTATGTCTAAGTAGAAGGACAATTTCTGCTTGA
Protein sequence

>Msa0640780

MKDMYENLSRKIDVDPKSIPSLLEGEFAVFSNTNRTNHPAIIKVIWENKEMAEDGLPHLIYISREKRPKQPHHFKAGAMNVLTKVSGLITNAPFMLNVDCDMFVNNPNIVMHALCILLDSKGQKEVAFAQCPQQFYATLKDDPFGNQMAILYKYLGAGLAGLQGMFYGGTNCFHRRKVIYGLSPDDVEKGNNLSKVELKQKFGASKELMKSVGHALEDRTYSASDIDVNKAVEEAIHVASYGYEYGTGWGKQVGWMYGTMTEDILTGLTIHKKGWRSELCTPEPIAFTGCAPIDGPTCMAQHKRWATGMLEIFFSKHCPIFAAVFGKLSFRQFLAYMWIMNWGFGPVAQDWGIYIPTAIVGIYKVYTLYEYLASGLSIKAWWNNQRMSRITSMNAGFCGFITVLLKLLGISNTVFDITKKDLPPSRDDQHDKNVGRYTFNESLVFLPGTTILSLQLTAIFIKLFGFQPQSLNGNYECGLAEMLISVYLIICYWPFLRGLFETGKFGIPLSTICKGATLTCIFVCLSRRTISA*