AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0016830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016830 MtrunA17_Chr1g0168471 96.850 127 4 0 1 127 1 127 3.12e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016830 AT2G05620.2 75.940 133 23 4 2 127 3 133 9.08e-66 196
Msa0016830 AT2G05620.1 75.940 133 23 4 2 127 3 133 9.08e-66 196

Find 51 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAATGTTATAAAATTTA+AGG 0.124190 1_1:-27961775 Msa0016830:three_prime_UTR
TCATCAATGGTTCACATAAA+AGG 0.199695 1_1:+27961684 None:intergenic
ATCTTTCCTTGATTCCTCTT+TGG 0.239274 1_1:-27961639 Msa0016830:three_prime_UTR
AGAAATTGAAGTGGCCATTT+TGG 0.249155 1_1:+27963108 None:intergenic
TTTGTGAATGTAAAAGAATA+AGG 0.314488 1_1:+27963166 None:intergenic
AAACGTTTCAATCAGCTTAG+AGG 0.319386 1_1:-27962872 Msa0016830:CDS
TCATTAACATTCTTCATCAT+AGG 0.355579 1_1:+27962950 None:intergenic
GCCACTTCAATTTCTGCAAC+AGG 0.355663 1_1:-27963100 Msa0016830:CDS
ACCAATGGTTTAGATGTATT+AGG 0.364864 1_1:+27963293 None:intergenic
AAACATCATAGTAACCAAAA+TGG 0.374163 1_1:-27963122 Msa0016830:exon
ACTGAATTCTGCAAATCAAT+AGG 0.397917 1_1:-27962045 Msa0016830:CDS
AACAGAGACAAGGGTTGATC+AGG 0.409880 1_1:-27962011 Msa0016830:CDS
TGTGTTGGTTCATCATTCTA+TGG 0.416628 1_1:-27963076 Msa0016830:CDS
GCTTCAATGCATGGTTGTAA+TGG 0.427377 1_1:+27963219 None:intergenic
TTACGAGTAACCACAACAAT+TGG 0.430918 1_1:+27962908 None:intergenic
AGCCATTGCTTTACACTCTC+AGG 0.432190 1_1:-27962846 Msa0016830:intron
GTTTCATCACAAGTTCGTAT+TGG 0.445319 1_1:-27963001 Msa0016830:CDS
GTTCATCATTCTATGGAAGC+TGG 0.445752 1_1:-27963069 Msa0016830:CDS
GTGGTTACTCGTAATATTGT+TGG 0.474864 1_1:-27962899 Msa0016830:CDS
TAATATTTGTATGTGAAGGA+AGG 0.478965 1_1:+27963246 None:intergenic
ATTTCTGCAACAGGTTGTGT+TGG 0.484427 1_1:-27963091 Msa0016830:CDS
AGCTGGGGAACTTCTATAGT+TGG 0.486890 1_1:-27963052 Msa0016830:CDS
ATCATAGGTTGCAACCTCAC+TGG 0.491055 1_1:+27962965 None:intergenic
TTCATCATTCTATGGAAGCT+GGG 0.491238 1_1:-27963068 Msa0016830:CDS
ATCAGGTTGGCTAAGAAGAA+TGG 0.492634 1_1:-27961994 Msa0016830:CDS
TCCTAATACATCTAAACCAT+TGG 0.494645 1_1:-27963294 Msa0016830:five_prime_UTR
ATGATGAAGAATGTTAATGA+AGG 0.502442 1_1:-27962947 Msa0016830:CDS
AAAAGATTAGCTTCAATGCA+TGG 0.504944 1_1:+27963210 None:intergenic
ATGGTTCACATAAAAGGCTA+TGG 0.508728 1_1:+27961690 None:intergenic
GGTGTAAATTGGAGAACCAA+TGG 0.516856 1_1:+27963278 None:intergenic
TTAACACCAAAGAGGAATCA+AGG 0.525346 1_1:+27961633 None:intergenic
TATATTTGCTCCAATTGTTG+TGG 0.534523 1_1:-27962918 Msa0016830:CDS
AATATTTGTATGTGAAGGAA+GGG 0.541782 1_1:+27963247 None:intergenic
AAGAAGAATGGAGAATGGCT+TGG 0.545873 1_1:-27961982 Msa0016830:CDS
TTGACAGCAGAATGTAAACT+AGG 0.551181 1_1:-27961870 Msa0016830:three_prime_UTR
TTTATAATATTTGTATGTGA+AGG 0.558690 1_1:+27963242 None:intergenic
AAATGTTATAAAATTTAAGG+AGG 0.565028 1_1:-27961772 Msa0016830:three_prime_UTR
AAGAATGTTAATGAAGGGAA+AGG 0.566696 1_1:-27962941 Msa0016830:CDS
GACATTGTAATTACAAAATG+CGG 0.570979 1_1:+27961929 None:intergenic
GAGACAAGGGTTGATCAGGT+TGG 0.575573 1_1:-27962007 Msa0016830:CDS
ACCTGTTGCAGAAATTGAAG+TGG 0.588366 1_1:+27963099 None:intergenic
TGGCTAAGAAGAATGGAGAA+TGG 0.601122 1_1:-27961987 Msa0016830:CDS
TGATGAAGAATGTTAATGAA+GGG 0.601637 1_1:-27962946 Msa0016830:CDS
CACCTGAGAGTGTAAAGCAA+TGG 0.607087 1_1:+27962844 None:intergenic
GCAGATGCAAAACAGAGACA+AGG 0.627180 1_1:-27962021 Msa0016830:CDS
TCATCATTCTATGGAAGCTG+GGG 0.629743 1_1:-27963067 Msa0016830:CDS
CATGAGGGTTAACACCAAAG+AGG 0.643347 1_1:+27961625 None:intergenic
AACTCTCGATTATCACATGA+GGG 0.643574 1_1:+27961610 None:intergenic
GAAGAGTTAGTAAGCCAGTG+AGG 0.661265 1_1:-27962979 Msa0016830:CDS
CAGATGCAAAACAGAGACAA+GGG 0.674066 1_1:-27962020 Msa0016830:CDS
GAACTCTCGATTATCACATG+AGG 0.690694 1_1:+27961609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTGAATAAAATATGA+TGG - chr1_1:27962797-27962816 Msa0016830:intron 10.0%
!! TTTATTTGAATAAAATATGA+TGG - chr1_1:27962797-27962816 Msa0016830:intron 10.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_1:27961684-27961703 None:intergenic 15.0%
!! AAACTAAAGATAAAAAATGA+AGG - chr1_1:27962427-27962446 Msa0016830:intron 15.0%
!! AAATGTTATAAAATTTAAGG+AGG - chr1_1:27963151-27963170 Msa0016830:five_prime_UTR 15.0%
!!! ATATAAACTTTTTTCATCAA+TGG + chr1_1:27963255-27963274 None:intergenic 15.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_1:27961684-27961703 None:intergenic 15.0%
!! AAACTAAAGATAAAAAATGA+AGG - chr1_1:27962427-27962446 Msa0016830:intron 15.0%
!! AAATGTTATAAAATTTAAGG+AGG - chr1_1:27963151-27963170 Msa0016830:five_prime_UTR 15.0%
!!! ATATAAACTTTTTTCATCAA+TGG + chr1_1:27963255-27963274 None:intergenic 15.0%
!! TTTGTGAATGTAAAAGAATA+AGG + chr1_1:27961760-27961779 None:intergenic 20.0%
!!! ACTTGAATTATGATTTTATG+TGG - chr1_1:27962276-27962295 Msa0016830:intron 20.0%
!! TTCAAGTAGAATTTATCAAA+TGG - chr1_1:27962358-27962377 Msa0016830:intron 20.0%
!! AGAATTTATCAAATGGAAAA+TGG - chr1_1:27962365-27962384 Msa0016830:intron 20.0%
!!! CTTCAATATTTTGAAATGTT+AGG - chr1_1:27962850-27962869 Msa0016830:CDS 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_1:27963023-27963042 Msa0016830:CDS 20.0%
!! TTTGTGAATGTAAAAGAATA+AGG + chr1_1:27961760-27961779 None:intergenic 20.0%
!!! ACTTGAATTATGATTTTATG+TGG - chr1_1:27962276-27962295 Msa0016830:intron 20.0%
!! TTCAAGTAGAATTTATCAAA+TGG - chr1_1:27962358-27962377 Msa0016830:intron 20.0%
!! AGAATTTATCAAATGGAAAA+TGG - chr1_1:27962365-27962384 Msa0016830:intron 20.0%
!!! CTTCAATATTTTGAAATGTT+AGG - chr1_1:27962850-27962869 Msa0016830:CDS 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_1:27963023-27963042 Msa0016830:CDS 20.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_1:27961679-27961698 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_1:27961680-27961699 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_1:27961801-27961820 Msa0016830:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_1:27961976-27961995 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_1:27961976-27961995 Msa0016830:CDS 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_1:27961977-27961996 Msa0016830:CDS 25.0%
!!! GATATTTTAGTGTTACAACT+AGG - chr1_1:27962228-27962247 Msa0016830:intron 25.0%
!! TCAAAAACCTTGATTTTATC+TGG - chr1_1:27962565-27962584 Msa0016830:intron 25.0%
!! AGTTGAATTTCCTTTTTGAA+AGG - chr1_1:27962631-27962650 Msa0016830:intron 25.0%
! CATTTAGTATCCTTTCAAAA+AGG + chr1_1:27962644-27962663 None:intergenic 25.0%
!!! CTTTTTGAAAGGATACTAAA+TGG - chr1_1:27962642-27962661 Msa0016830:intron 25.0%
! AGCAATTGTTTCAAAATCTT+TGG - chr1_1:27962767-27962786 Msa0016830:intron 25.0%
! ATTGTTTCAAAATCTTTGGT+TGG - chr1_1:27962771-27962790 Msa0016830:intron 25.0%
! GACATTGTAATTACAAAATG+CGG + chr1_1:27962997-27963016 None:intergenic 25.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_1:27961679-27961698 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_1:27961680-27961699 None:intergenic 25.0%
! AAACATCATAGTAACCAAAA+TGG - chr1_1:27961801-27961820 Msa0016830:three_prime_UTR 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_1:27961976-27961995 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_1:27961976-27961995 Msa0016830:CDS 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_1:27961977-27961996 Msa0016830:CDS 25.0%
!!! GATATTTTAGTGTTACAACT+AGG - chr1_1:27962228-27962247 Msa0016830:intron 25.0%
!! TCAAAAACCTTGATTTTATC+TGG - chr1_1:27962565-27962584 Msa0016830:intron 25.0%
!! AGTTGAATTTCCTTTTTGAA+AGG - chr1_1:27962631-27962650 Msa0016830:intron 25.0%
! CATTTAGTATCCTTTCAAAA+AGG + chr1_1:27962644-27962663 None:intergenic 25.0%
!!! CTTTTTGAAAGGATACTAAA+TGG - chr1_1:27962642-27962661 Msa0016830:intron 25.0%
! AGCAATTGTTTCAAAATCTT+TGG - chr1_1:27962767-27962786 Msa0016830:intron 25.0%
! ATTGTTTCAAAATCTTTGGT+TGG - chr1_1:27962771-27962790 Msa0016830:intron 25.0%
! GACATTGTAATTACAAAATG+CGG + chr1_1:27962997-27963016 None:intergenic 25.0%
TCCTAATACATCTAAACCAT+TGG - chr1_1:27961629-27961648 Msa0016830:three_prime_UTR 30.0%
ACCAATGGTTTAGATGTATT+AGG + chr1_1:27961633-27961652 None:intergenic 30.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_1:27961659-27961678 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_1:27961716-27961735 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_1:27961982-27962001 Msa0016830:CDS 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_1:27962005-27962024 Msa0016830:CDS 30.0%
! TCTTTCTTGTTCATGTCTTT+TGG - chr1_1:27962184-27962203 Msa0016830:intron 30.0%
!!! CTTTTGGAATTTTGTTTGTG+AGG - chr1_1:27962200-27962219 Msa0016830:intron 30.0%
!! GAATTTTGTTTGTGAGGTAT+TGG - chr1_1:27962206-27962225 Msa0016830:intron 30.0%
GGTTTATCTGTTTCAAAGTT+TGG - chr1_1:27962297-27962316 Msa0016830:intron 30.0%
TCAAAGTTTGGTTAGATTGA+AGG - chr1_1:27962309-27962328 Msa0016830:intron 30.0%
CAAAGTTTGGTTAGATTGAA+GGG - chr1_1:27962310-27962329 Msa0016830:intron 30.0%
TTATATCGCGTAATCAAATG+CGG - chr1_1:27962499-27962518 Msa0016830:intron 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_1:27962878-27962897 Msa0016830:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_1:27963242-27963261 None:intergenic 30.0%
TCCTAATACATCTAAACCAT+TGG - chr1_1:27961629-27961648 Msa0016830:three_prime_UTR 30.0%
ACCAATGGTTTAGATGTATT+AGG + chr1_1:27961633-27961652 None:intergenic 30.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_1:27961659-27961678 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_1:27961716-27961735 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_1:27961982-27962001 Msa0016830:CDS 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_1:27962005-27962024 Msa0016830:CDS 30.0%
! TCTTTCTTGTTCATGTCTTT+TGG - chr1_1:27962184-27962203 Msa0016830:intron 30.0%
!!! CTTTTGGAATTTTGTTTGTG+AGG - chr1_1:27962200-27962219 Msa0016830:intron 30.0%
!! GAATTTTGTTTGTGAGGTAT+TGG - chr1_1:27962206-27962225 Msa0016830:intron 30.0%
GGTTTATCTGTTTCAAAGTT+TGG - chr1_1:27962297-27962316 Msa0016830:intron 30.0%
TCAAAGTTTGGTTAGATTGA+AGG - chr1_1:27962309-27962328 Msa0016830:intron 30.0%
CAAAGTTTGGTTAGATTGAA+GGG - chr1_1:27962310-27962329 Msa0016830:intron 30.0%
TTATATCGCGTAATCAAATG+CGG - chr1_1:27962499-27962518 Msa0016830:intron 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_1:27962878-27962897 Msa0016830:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_1:27963242-27963261 None:intergenic 30.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_1:27961669-27961688 None:intergenic 35.0%
! AGAAATTGAAGTGGCCATTT+TGG + chr1_1:27961818-27961837 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_1:27961847-27961866 Msa0016830:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_1:27961855-27961874 Msa0016830:three_prime_UTR 35.0%
GTTTCATCACAAGTTCGTAT+TGG - chr1_1:27961922-27961941 Msa0016830:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_1:27962018-27962037 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_1:27962024-27962043 Msa0016830:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_1:27962051-27962070 Msa0016830:CDS 35.0%
GTGTAATAGGACTTCGATTA+TGG + chr1_1:27962534-27962553 None:intergenic 35.0%
ACACAGACCAGATAAAATCA+AGG + chr1_1:27962575-27962594 None:intergenic 35.0%
! GATTTTATCTGGTCTGTGTT+TGG - chr1_1:27962576-27962595 Msa0016830:intron 35.0%
ATGAGAGATTGAGAATTGTG+TGG - chr1_1:27962743-27962762 Msa0016830:intron 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_1:27963053-27963072 Msa0016830:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_1:27963236-27963255 None:intergenic 35.0%
ATCTTTCCTTGATTCCTCTT+TGG - chr1_1:27963284-27963303 Msa0016830:five_prime_UTR 35.0%
TTAACACCAAAGAGGAATCA+AGG + chr1_1:27963293-27963312 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_1:27961669-27961688 None:intergenic 35.0%
! AGAAATTGAAGTGGCCATTT+TGG + chr1_1:27961818-27961837 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_1:27961847-27961866 Msa0016830:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_1:27961855-27961874 Msa0016830:three_prime_UTR 35.0%
GTTTCATCACAAGTTCGTAT+TGG - chr1_1:27961922-27961941 Msa0016830:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_1:27962018-27962037 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_1:27962024-27962043 Msa0016830:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_1:27962051-27962070 Msa0016830:CDS 35.0%
GTGTAATAGGACTTCGATTA+TGG + chr1_1:27962534-27962553 None:intergenic 35.0%
ACACAGACCAGATAAAATCA+AGG + chr1_1:27962575-27962594 None:intergenic 35.0%
! GATTTTATCTGGTCTGTGTT+TGG - chr1_1:27962576-27962595 Msa0016830:intron 35.0%
ATGAGAGATTGAGAATTGTG+TGG - chr1_1:27962743-27962762 Msa0016830:intron 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_1:27963053-27963072 Msa0016830:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_1:27963236-27963255 None:intergenic 35.0%
ATCTTTCCTTGATTCCTCTT+TGG - chr1_1:27963284-27963303 Msa0016830:five_prime_UTR 35.0%
TTAACACCAAAGAGGAATCA+AGG + chr1_1:27963293-27963312 None:intergenic 35.0%
GGTGTAAATTGGAGAACCAA+TGG + chr1_1:27961648-27961667 None:intergenic 40.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_1:27961707-27961726 None:intergenic 40.0%
ACCTGTTGCAGAAATTGAAG+TGG + chr1_1:27961827-27961846 None:intergenic 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_1:27961832-27961851 Msa0016830:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_1:27961854-27961873 Msa0016830:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_1:27961856-27961875 Msa0016830:three_prime_UTR 40.0%
TCAAAGTCGTGTAATAGTCG+TGG - chr1_1:27962461-27962480 Msa0016830:intron 40.0%
GATGTCTCTACGAGTGTAAT+AGG + chr1_1:27962547-27962566 None:intergenic 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_1:27962903-27962922 Msa0016830:CDS 40.0%
!! ATCAGGTTGGCTAAGAAGAA+TGG - chr1_1:27962929-27962948 Msa0016830:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_1:27962936-27962955 Msa0016830:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_1:27962941-27962960 Msa0016830:CDS 40.0%
GGTGTAAATTGGAGAACCAA+TGG + chr1_1:27961648-27961667 None:intergenic 40.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_1:27961707-27961726 None:intergenic 40.0%
ACCTGTTGCAGAAATTGAAG+TGG + chr1_1:27961827-27961846 None:intergenic 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_1:27961832-27961851 Msa0016830:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_1:27961854-27961873 Msa0016830:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_1:27961856-27961875 Msa0016830:three_prime_UTR 40.0%
TCAAAGTCGTGTAATAGTCG+TGG - chr1_1:27962461-27962480 Msa0016830:intron 40.0%
GATGTCTCTACGAGTGTAAT+AGG + chr1_1:27962547-27962566 None:intergenic 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_1:27962903-27962922 Msa0016830:CDS 40.0%
!! ATCAGGTTGGCTAAGAAGAA+TGG - chr1_1:27962929-27962948 Msa0016830:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_1:27962936-27962955 Msa0016830:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_1:27962941-27962960 Msa0016830:CDS 40.0%
GCCACTTCAATTTCTGCAAC+AGG - chr1_1:27961823-27961842 Msa0016830:three_prime_UTR 45.0%
AGCTGGGGAACTTCTATAGT+TGG - chr1_1:27961871-27961890 Msa0016830:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_1:27961944-27961963 Msa0016830:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_1:27961961-27961980 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_1:27962077-27962096 Msa0016830:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_1:27962082-27962101 None:intergenic 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_1:27962902-27962921 Msa0016830:CDS 45.0%
! AACAGAGACAAGGGTTGATC+AGG - chr1_1:27962912-27962931 Msa0016830:CDS 45.0%
CATGAGGGTTAACACCAAAG+AGG + chr1_1:27963301-27963320 None:intergenic 45.0%
GCCACTTCAATTTCTGCAAC+AGG - chr1_1:27961823-27961842 Msa0016830:three_prime_UTR 45.0%
AGCTGGGGAACTTCTATAGT+TGG - chr1_1:27961871-27961890 Msa0016830:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_1:27961944-27961963 Msa0016830:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_1:27961961-27961980 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_1:27962077-27962096 Msa0016830:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_1:27962082-27962101 None:intergenic 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_1:27962902-27962921 Msa0016830:CDS 45.0%
! AACAGAGACAAGGGTTGATC+AGG - chr1_1:27962912-27962931 Msa0016830:CDS 45.0%
CATGAGGGTTAACACCAAAG+AGG + chr1_1:27963301-27963320 None:intergenic 45.0%
!! AAAAATGTAATTTATATATT+AGG - chr1_1:27962393-27962412 Msa0016830:intron 5.0%
!! ATTAAATGTTATAAAATTTA+AGG - chr1_1:27963148-27963167 Msa0016830:five_prime_UTR 5.0%
!! AAAAATGTAATTTATATATT+AGG - chr1_1:27962393-27962412 Msa0016830:intron 5.0%
!! ATTAAATGTTATAAAATTTA+AGG - chr1_1:27963148-27963167 Msa0016830:five_prime_UTR 5.0%
! GAGACAAGGGTTGATCAGGT+TGG - chr1_1:27962916-27962935 Msa0016830:CDS 50.0%
! GAGACAAGGGTTGATCAGGT+TGG - chr1_1:27962916-27962935 Msa0016830:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 27961624 27963321 27961624 ID=Msa0016830;Name=Msa0016830
chr1_1 mRNA 27961624 27963321 27961624 ID=Msa0016830-mRNA-1;Parent=Msa0016830;Name=Msa0016830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=196|1|1|1|1|1|2|345|127
chr1_1 exon 27961624 27962073 27961624 ID=Msa0016830-mRNA-1:exon:9361;Parent=Msa0016830-mRNA-1
chr1_1 exon 27962847 27963321 27962847 ID=Msa0016830-mRNA-1:exon:9360;Parent=Msa0016830-mRNA-1
chr1_1 five_prime_UTR 27963126 27963321 27963126 ID=Msa0016830-mRNA-1:five_prime_utr;Parent=Msa0016830-mRNA-1
chr1_1 CDS 27962847 27963125 27962847 ID=Msa0016830-mRNA-1:cds;Parent=Msa0016830-mRNA-1
chr1_1 CDS 27961969 27962073 27961969 ID=Msa0016830-mRNA-1:cds;Parent=Msa0016830-mRNA-1
chr1_1 three_prime_UTR 27961624 27961968 27961624 ID=Msa0016830-mRNA-1:three_prime_utr;Parent=Msa0016830-mRNA-1
Gene Sequence

>Msa0016830

ATGGCCACTTCAATTTCTGCAACAGGTTGTGTTGGTTCATCATTCTATGGAAGCTGGGGAACTTCTATAGTTGGTGAAGATTACAGCATGTTAGCTAAGTCAGTTTCATCACAAGTTCGTATTGGAAGAGTTAGTAAGCCAGTGAGGTTGCAACCTATGATGAAGAATGTTAATGAAGGGAAAGGTATATTTGCTCCAATTGTTGTGGTTACTCGTAATATTGTTGGAAAGAAACGTTTCAATCAGCTTAGAGGCAAAGCCATTGCTTTACACTCTCAGGTAATTACTGAATTCTGCAAATCAATAGGAGCAGATGCAAAACAGAGACAAGGGTTGATCAGGTTGGCTAAGAAGAATGGAGAATGGCTTGGTTTTCTTGCATGA

Protein sequence

>Msa0016830

MATSISATGCVGSSFYGSWGTSIVGEDYSMLAKSVSSQVRIGRVSKPVRLQPMMKNVNEGKGIFAPIVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGEWLGFLA*