Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460330 | XP_013460987.1 | 96.207 | 290 | 10 | 1 | 1 | 289 | 1 | 290 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460330 | sp|Q0WWT7|STR11_ARATH | 65.870 | 293 | 95 | 3 | 1 | 289 | 1 | 292 | 2.09e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460330 | A0A072UZZ1 | 96.207 | 290 | 10 | 1 | 1 | 289 | 1 | 290 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030730 | Msa0460330 | 0.820088 | 8.249280e-53 | -8.615850e-47 |
| Msa0032400 | Msa0460330 | 0.806469 | 8.103096e-50 | -8.615850e-47 |
| Msa0044220 | Msa0460330 | 0.822838 | 1.911939e-53 | -8.615850e-47 |
| Msa0048020 | Msa0460330 | 0.807277 | 5.467433e-50 | -8.615850e-47 |
| Msa0073820 | Msa0460330 | 0.829551 | 4.833175e-55 | -8.615850e-47 |
| Msa0078090 | Msa0460330 | 0.831976 | 1.230067e-55 | -8.615850e-47 |
| Msa0082820 | Msa0460330 | 0.808868 | 2.506566e-50 | -8.615850e-47 |
| Msa0139050 | Msa0460330 | 0.808980 | 2.372505e-50 | -8.615850e-47 |
| Msa0141430 | Msa0460330 | 0.808867 | 2.508219e-50 | -8.615850e-47 |
| Msa0164540 | Msa0460330 | 0.819561 | 1.088970e-52 | -8.615850e-47 |
| Msa0170680 | Msa0460330 | 0.834663 | 2.631056e-56 | -8.615850e-47 |
| Msa0171780 | Msa0460330 | 0.807539 | 4.810503e-50 | -8.615850e-47 |
| Msa0171930 | Msa0460330 | 0.806700 | 7.244132e-50 | -8.615850e-47 |
| Msa0177280 | Msa0460330 | 0.800861 | 1.181331e-48 | -8.615850e-47 |
| Msa0183170 | Msa0460330 | 0.802436 | 5.614579e-49 | -8.615850e-47 |
| Msa0185700 | Msa0460330 | 0.802935 | 4.430754e-49 | -8.615850e-47 |
| Msa0194570 | Msa0460330 | 0.813176 | 2.921493e-51 | -8.615850e-47 |
| Msa0197900 | Msa0460330 | 0.829789 | 4.228871e-55 | -8.615850e-47 |
| Msa0223390 | Msa0460330 | 0.805088 | 1.580453e-49 | -8.615850e-47 |
| Msa0225010 | Msa0460330 | 0.800215 | 1.600002e-48 | -8.615850e-47 |
| Msa0367370 | Msa0460330 | 0.828366 | 9.355587e-55 | -8.615850e-47 |
| Msa0379110 | Msa0460330 | 0.820071 | 8.323861e-53 | -8.615850e-47 |
| Msa0382500 | Msa0460330 | 0.800545 | 1.370547e-48 | -8.615850e-47 |
| Msa0432680 | Msa0460330 | 0.800015 | 1.756826e-48 | -8.615850e-47 |
| Msa0436090 | Msa0460330 | 0.815613 | 8.452879e-52 | -8.615850e-47 |
| Msa0446480 | Msa0460330 | 0.831526 | 1.587617e-55 | -8.615850e-47 |
| Msa0450050 | Msa0460330 | 0.808460 | 3.064408e-50 | -8.615850e-47 |
| Msa0460330 | Msa0461640 | 0.812236 | 4.692936e-51 | -8.615850e-47 |
| Msa0460330 | Msa0506760 | 0.812965 | 3.250068e-51 | -8.615850e-47 |
| Msa0460330 | Msa0511870 | 0.801175 | 1.019246e-48 | -8.615850e-47 |
| Msa0460330 | Msa0524050 | 0.802240 | 6.161020e-49 | -8.615850e-47 |
| Msa0460330 | Msa0527600 | 0.823282 | 1.506610e-53 | -8.615850e-47 |
| Msa0460330 | Msa0546380 | 0.811558 | 6.594514e-51 | -8.615850e-47 |
| Msa0460330 | Msa0555940 | 0.811474 | 6.875021e-51 | -8.615850e-47 |
| Msa0460330 | Msa0563530 | 0.839678 | 1.372722e-57 | -8.615850e-47 |
| Msa0460330 | Msa0567290 | 0.840080 | 1.078662e-57 | -8.615850e-47 |
| Msa0460330 | Msa0574170 | 0.813742 | 2.194665e-51 | -8.615850e-47 |
| Msa0460330 | Msa0576420 | 0.804393 | 2.207150e-49 | -8.615850e-47 |
| Msa0460330 | Msa0578900 | 0.826311 | 2.907953e-54 | -8.615850e-47 |
| Msa0460330 | Msa0610860 | 0.817152 | 3.823399e-52 | -8.615850e-47 |
| Msa0460330 | Msa0629290 | 0.841287 | 5.205920e-58 | -8.615850e-47 |
| Msa0460330 | Msa0639370 | 0.828975 | 6.665195e-55 | -8.615850e-47 |
| Msa0460330 | Msa0647750 | 0.804688 | 1.915778e-49 | -8.615850e-47 |
| Msa0460330 | Msa0661470 | 0.819169 | 1.337427e-52 | -8.615850e-47 |
| Msa0460330 | Msa0682400 | 0.800156 | 1.644777e-48 | -8.615850e-47 |
| Msa0460330 | Msa0703760 | 0.811680 | 6.202737e-51 | -8.615850e-47 |
| Msa0460330 | Msa0709480 | 0.812405 | 4.311029e-51 | -8.615850e-47 |
| Msa0460330 | Msa0730180 | 0.815308 | 9.880843e-52 | -8.615850e-47 |
| Msa0460330 | Msa0746600 | 0.803798 | 2.935179e-49 | -8.615850e-47 |
| Msa0460330 | Msa0790830 | 0.823254 | 1.529354e-53 | -8.615850e-47 |
| Msa0460330 | Msa0843690 | 0.816978 | 4.184861e-52 | -8.615850e-47 |
| Msa0460330 | Msa0864150 | 0.811276 | 7.591681e-51 | -8.615850e-47 |
| Msa0460330 | Msa0873830 | 0.800272 | 1.558070e-48 | -8.615850e-47 |
| Msa0460330 | Msa0890250 | 0.807168 | 5.766624e-50 | -8.615850e-47 |
| Msa0460330 | Msa0909710 | 0.805312 | 1.418756e-49 | -8.615850e-47 |
| Msa0460330 | Msa0925160 | 0.813302 | 2.741239e-51 | -8.615850e-47 |
| Msa0460330 | Msa0937940 | 0.809047 | 2.294581e-50 | -8.615850e-47 |
| Msa0460330 | Msa0955260 | 0.807482 | 4.947481e-50 | -8.615850e-47 |
| Msa0460330 | Msa0972730 | 0.800612 | 1.328242e-48 | -8.615850e-47 |
| Msa0460330 | Msa0975080 | 0.808736 | 2.675052e-50 | -8.615850e-47 |
| Msa0460330 | Msa1061180 | 0.812103 | 5.017366e-51 | -8.615850e-47 |
| Msa0460330 | Msa1072080 | 0.816919 | 4.314975e-52 | -8.615850e-47 |
| Msa0460330 | Msa1106560 | 0.814604 | 1.415592e-51 | -8.615850e-47 |
| Msa0460330 | Msa1125780 | 0.823771 | 1.157531e-53 | -8.615850e-47 |
| Msa0460330 | Msa1125950 | 0.821775 | 3.375370e-53 | -8.615850e-47 |
| Msa0460330 | Msa1129560 | 0.804301 | 2.307160e-49 | -8.615850e-47 |
| Msa0460330 | Msa1129720 | 0.809095 | 2.240933e-50 | -8.615850e-47 |
| Msa0460330 | Msa1148780 | 0.816403 | 5.630980e-52 | -8.615850e-47 |
| Msa0460330 | Msa1159100 | 0.803283 | 3.752861e-49 | -8.615850e-47 |
| Msa0460330 | Msa1171340 | 0.819882 | 9.195523e-53 | -8.615850e-47 |
| Msa0460330 | Msa1183390 | 0.822441 | 2.364899e-53 | -8.615850e-47 |
| Msa0460330 | Msa1229050 | 0.820001 | 8.635379e-53 | -8.615850e-47 |
| Msa0460330 | Msa1229690 | 0.811820 | 5.781887e-51 | -8.615850e-47 |
| Msa0460330 | Msa1259470 | 0.801837 | 7.456621e-49 | -8.615850e-47 |
| Msa0460330 | Msa1271490 | 0.818102 | 2.335343e-52 | -8.615850e-47 |
| Msa0460330 | Msa1271510 | 0.821554 | 3.795769e-53 | -8.615850e-47 |
| Msa0460330 | Msa1293530 | 0.814382 | 1.584939e-51 | -8.615850e-47 |
| Msa0460330 | Msa1305520 | 0.810180 | 1.310513e-50 | -8.615850e-47 |
| Msa0460330 | Msa1309360 | 0.827685 | 1.365152e-54 | -8.615850e-47 |
| Msa0460330 | Msa1385900 | 0.808334 | 3.259738e-50 | -8.615850e-47 |
| Msa0460330 | Msa1398480 | 0.801530 | 8.622176e-49 | -8.615850e-47 |
| Msa0460330 | Msa1404370 | 0.817670 | 2.922887e-52 | -8.615850e-47 |
| Msa0460330 | Msa1407710 | 0.842204 | 2.981827e-58 | -8.615850e-47 |
| Msa0460330 | Msa1430270 | 0.825926 | 3.591301e-54 | -8.615850e-47 |
| Msa0460330 | Msa1438360 | 0.815290 | 9.970496e-52 | -8.615850e-47 |
| Msa0460330 | Msa1447230 | 0.807434 | 5.064225e-50 | -8.615850e-47 |
| Msa0239660 | Msa0460330 | 0.812865 | 3.419733e-51 | -8.615850e-47 |
| Msa0255990 | Msa0460330 | 0.807886 | 4.060468e-50 | -8.615850e-47 |
| Msa0258380 | Msa0460330 | 0.801275 | 9.721892e-49 | -8.615850e-47 |
| Msa0277640 | Msa0460330 | 0.808283 | 3.342488e-50 | -8.615850e-47 |
| Msa0298970 | Msa0460330 | 0.836168 | 1.095970e-56 | -8.615850e-47 |
| Msa0314790 | Msa0460330 | 0.803660 | 3.136005e-49 | -8.615850e-47 |
| Msa0317260 | Msa0460330 | 0.805428 | 1.341559e-49 | -8.615850e-47 |
| Msa0323990 | Msa0460330 | 0.812827 | 3.484339e-51 | -8.615850e-47 |
| Msa0324010 | Msa0460330 | 0.855230 | 7.253929e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460330 | MtrunA17_Chr3g0116671 | 96.207 | 290 | 10 | 1 | 1 | 289 | 1 | 290 | 0.0 | 572 |
| Msa0460330 | MtrunA17_Chr4g0006411 | 38.509 | 161 | 97 | 2 | 79 | 237 | 52 | 212 | 2.14e-29 | 111 |
| Msa0460330 | MtrunA17_Chr7g0258361 | 27.097 | 155 | 113 | 0 | 84 | 238 | 46 | 200 | 2.78e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460330 | AT4G24750.1 | 65.870 | 293 | 95 | 3 | 1 | 289 | 1 | 292 | 2.13e-144 | 407 |
| Msa0460330 | AT3G08920.1 | 38.608 | 158 | 95 | 2 | 79 | 234 | 39 | 196 | 2.81e-26 | 103 |
| Msa0460330 | AT2G42220.1 | 29.560 | 159 | 112 | 0 | 75 | 233 | 39 | 197 | 6.12e-19 | 84.0 |
Find 123 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCTTCCCATCTCTTTC+TGG | 0.133810 | 3_3:+57636350 | None:intergenic |
| AACAATTAGTTCTGCATCTT+TGG | 0.158493 | 3_3:+57634733 | None:intergenic |
| CCGGCTACACAAACCTGTTT+TGG | 0.206000 | 3_3:-57634415 | Msa0460330:CDS |
| TTTATTGGTGCTCAGCAAAT+TGG | 0.214914 | 3_3:-57633003 | Msa0460330:CDS |
| ATGGGGTGTGGTTCTAGTTT+AGG | 0.257026 | 3_3:-57632743 | Msa0460330:three_prime_UTR |
| TTCTGAAATTTATGTCATAA+TGG | 0.265639 | 3_3:-57632786 | Msa0460330:three_prime_UTR |
| GTTGCCGATGCATTATTTAT+TGG | 0.266506 | 3_3:-57633018 | Msa0460330:CDS |
| ACAATTAGTTCTGCATCTTT+GGG | 0.290043 | 3_3:+57634734 | None:intergenic |
| CCTCTTAAGTTTGCTGGAAT+TGG | 0.299694 | 3_3:-57634219 | Msa0460330:CDS |
| TCTTACTGCTGGATAAATTA+AGG | 0.304666 | 3_3:-57632555 | Msa0460330:three_prime_UTR |
| ATGATTAATAATAAGATTAG+AGG | 0.305224 | 3_3:+57636665 | None:intergenic |
| ATCATAAATCCAAGTGTAGA+TGG | 0.323036 | 3_3:-57632762 | Msa0460330:three_prime_UTR |
| TCTGAAATTTATGTCATAAT+GGG | 0.323374 | 3_3:-57632785 | Msa0460330:three_prime_UTR |
| CTGCTGCAGCCAAGGAAGGC+TGG | 0.326127 | 3_3:-57633167 | Msa0460330:CDS |
| TGAATGCCGACCCTTGTTAG+AGG | 0.338976 | 3_3:-57632849 | Msa0460330:three_prime_UTR |
| TCAGCGCCTCTTAAGTTTGC+TGG | 0.341434 | 3_3:-57634225 | Msa0460330:CDS |
| GGGTGCATGCTTGCTTAGTT+AGG | 0.349047 | 3_3:-57636728 | Msa0460330:five_prime_UTR |
| GAGCTCACCTCAGTCCCTTC+TGG | 0.353437 | 3_3:+57634705 | None:intergenic |
| CCATCATCGACATTGAATAT+TGG | 0.361064 | 3_3:+57635042 | None:intergenic |
| GGGAACTTCTCCGCAACTTT+GGG | 0.366253 | 3_3:+57634755 | None:intergenic |
| TGCTGCAGCCAAGGAAGGCT+GGG | 0.369004 | 3_3:-57633166 | Msa0460330:CDS |
| TGCTGGAATTGGTGGTGTTT+CGG | 0.379254 | 3_3:-57634208 | Msa0460330:CDS |
| TATTATCACATACAAGAGTT+TGG | 0.382772 | 3_3:+57632683 | None:intergenic |
| TTCAACTAGACAGAAGTCTA+TGG | 0.385292 | 3_3:-57636525 | Msa0460330:intron |
| AATAATAAGATTAGAGGAAA+AGG | 0.388195 | 3_3:+57636671 | None:intergenic |
| TTATTGGTGCTCAGCAAATT+GGG | 0.410194 | 3_3:-57633002 | Msa0460330:CDS |
| TCTGTATCCCCAGCCTTCCT+TGG | 0.411638 | 3_3:+57633158 | None:intergenic |
| TCTAATCTTATTATTAATCA+TGG | 0.413903 | 3_3:-57636663 | Msa0460330:exon |
| GGTGGTGTTTCGGAATTCCT+TGG | 0.414207 | 3_3:-57634198 | Msa0460330:CDS |
| GCAAATTGGGCACTACCTTC+AGG | 0.418529 | 3_3:-57632989 | Msa0460330:CDS |
| CTTAAGTTTGCTGGAATTGG+TGG | 0.419134 | 3_3:-57634216 | Msa0460330:CDS |
| AACCTTGTTGTGTTCATTTG+AGG | 0.419393 | 3_3:+57635558 | None:intergenic |
| GGGGAACTTCTCCGCAACTT+TGG | 0.424721 | 3_3:+57634754 | None:intergenic |
| TTAATTTATCCAGCAGTAAG+AGG | 0.425327 | 3_3:+57632557 | None:intergenic |
| AGCCTCCTTGAACCCAAAAC+AGG | 0.429532 | 3_3:+57634402 | None:intergenic |
| CTGCATATCCAGCTTCCCTT+GGG | 0.434527 | 3_3:+57635617 | None:intergenic |
| AGAAGAAGGACGGTGTTGTA+AGG | 0.442401 | 3_3:+57636547 | None:intergenic |
| GTAGGTGTTGGTGTTGGAAT+TGG | 0.442509 | 3_3:+57636610 | None:intergenic |
| GGCACTACCTTCAGGAGATT+AGG | 0.443475 | 3_3:-57632981 | Msa0460330:CDS |
| ACTGCATATCCAGCTTCCCT+TGG | 0.444447 | 3_3:+57635616 | None:intergenic |
| ATTGAAGCAAGTCAGGGATA+TGG | 0.444913 | 3_3:-57636379 | Msa0460330:CDS |
| ACCTTGTTGTGTTCATTTGA+GGG | 0.445197 | 3_3:+57635559 | None:intergenic |
| ACAAGCCCCTTCTTGATGTT+CGG | 0.445700 | 3_3:-57635582 | Msa0460330:CDS |
| ACAACAATATAATCACAGTT+TGG | 0.446328 | 3_3:+57632594 | None:intergenic |
| TTTGAGTTATTGATTTATCC+TGG | 0.447854 | 3_3:-57632934 | Msa0460330:three_prime_UTR |
| CCAAAACAGGTTTGTGTAGC+CGG | 0.449289 | 3_3:+57634415 | None:intergenic |
| GACATTGAATATTGGAATCC+AGG | 0.449682 | 3_3:+57635050 | None:intergenic |
| ATGTAAACACAGTATCTCAA+TGG | 0.450454 | 3_3:+57632956 | None:intergenic |
| AGTTTAGAGAATCTAGATGA+TGG | 0.461534 | 3_3:-57636750 | Msa0460330:five_prime_UTR |
| GTTCTTACCCCAAGGGAAGC+TGG | 0.464181 | 3_3:-57635625 | Msa0460330:CDS |
| CCAATTCCAGCAAACTTAAG+AGG | 0.465822 | 3_3:+57634219 | None:intergenic |
| TGTTAGAGGCTTATTGCCCA+TGG | 0.488327 | 3_3:-57632835 | Msa0460330:three_prime_UTR |
| GTGGTGTTTCGGAATTCCTT+GGG | 0.488639 | 3_3:-57634197 | Msa0460330:intron |
| GTTTAGAGAATCTAGATGAT+GGG | 0.489482 | 3_3:-57636749 | Msa0460330:five_prime_UTR |
| CAGAAAGAGATGGGAAGCTC+TGG | 0.490533 | 3_3:-57636349 | Msa0460330:intron |
| ATGAAGTGAGATATCGATAA+GGG | 0.490827 | 3_3:-57636790 | None:intergenic |
| AACAGAAACCCTCTTACTGC+TGG | 0.491707 | 3_3:-57632566 | Msa0460330:three_prime_UTR |
| CCAATATTCAATGTCGATGA+TGG | 0.493249 | 3_3:-57635042 | Msa0460330:CDS |
| TCATAAATCCAAGTGTAGAT+GGG | 0.502161 | 3_3:-57632761 | Msa0460330:three_prime_UTR |
| ACAAAGAGCTGCTGCAGCCA+AGG | 0.514373 | 3_3:-57633175 | Msa0460330:CDS |
| GGAATTGGTAACAGTGATTG+TGG | 0.521328 | 3_3:+57636625 | None:intergenic |
| TGTAAACACAGTATCTCAAT+GGG | 0.525488 | 3_3:+57632957 | None:intergenic |
| GGCTGCTGCCAGAAAGAGAT+GGG | 0.527321 | 3_3:-57636358 | Msa0460330:CDS |
| GAATTGGTAACAGTGATTGT+GGG | 0.531813 | 3_3:+57636626 | None:intergenic |
| CTTTGATGCTGCTGAAGAAG+AGG | 0.535812 | 3_3:-57634381 | Msa0460330:intron |
| TAGATGTTGGAACCATTCCC+AGG | 0.536270 | 3_3:-57635017 | Msa0460330:CDS |
| CACTATTAGTGCATAGCACA+TGG | 0.537911 | 3_3:+57632714 | None:intergenic |
| GGTAACAGTGATTGTGGGAA+GGG | 0.538152 | 3_3:+57636631 | None:intergenic |
| GATGAGAAAATAGAGACAAC+TGG | 0.539558 | 3_3:-57632888 | Msa0460330:three_prime_UTR |
| GTGAGATATCGATAAGGGTA+AGG | 0.543443 | 3_3:-57636785 | None:intergenic |
| GCTGCAGCCAAGGAAGGCTG+GGG | 0.550934 | 3_3:-57633165 | Msa0460330:CDS |
| GTCGATGATGGTCTAGATGT+TGG | 0.552986 | 3_3:-57635030 | Msa0460330:CDS |
| AGAGCTGCTGCAGCCAAGGA+AGG | 0.553605 | 3_3:-57633171 | Msa0460330:CDS |
| CTAATTGTTGCATGCCAGAA+GGG | 0.553912 | 3_3:-57634719 | Msa0460330:CDS |
| AAAATAGAGACAACTGGCTG+AGG | 0.556615 | 3_3:-57632882 | Msa0460330:three_prime_UTR |
| TGGTAACAGTGATTGTGGGA+AGG | 0.563931 | 3_3:+57636630 | None:intergenic |
| TTGAGGGCCGAACATCAAGA+AGG | 0.565178 | 3_3:+57635575 | None:intergenic |
| ATCCAAGTGTAGATGGGGTG+TGG | 0.567797 | 3_3:-57632755 | Msa0460330:three_prime_UTR |
| CATGGGTGAAAGGTTCAACC+TGG | 0.567974 | 3_3:-57635068 | Msa0460330:CDS |
| TTCTGTCTAGTTGAAGAAGA+AGG | 0.568939 | 3_3:+57636533 | None:intergenic |
| TAATTTATCCAGCAGTAAGA+GGG | 0.572350 | 3_3:+57632558 | None:intergenic |
| CAATTAGTTCTGCATCTTTG+GGG | 0.572471 | 3_3:+57634735 | None:intergenic |
| AGAAATGTAGGTGTTGGTGT+TGG | 0.575274 | 3_3:+57636604 | None:intergenic |
| AACCACACCCCATCTACACT+TGG | 0.575447 | 3_3:+57632753 | None:intergenic |
| TGGTAAATCTAACTAAACCA+TGG | 0.576370 | 3_3:+57632818 | None:intergenic |
| TGGGCAATAAGCCTCTAACA+AGG | 0.576482 | 3_3:+57632838 | None:intergenic |
| CAAGGAACATTGTCTACACC+AGG | 0.579637 | 3_3:+57632916 | None:intergenic |
| ACTTAGAGAAATGTAGGTGT+TGG | 0.580172 | 3_3:+57636598 | None:intergenic |
| AAATTAAGGTTCTTACCCCA+AGG | 0.581254 | 3_3:-57635633 | Msa0460330:CDS |
| AAATTTCAGAAAGCACCGGC+TGG | 0.581346 | 3_3:+57632798 | None:intergenic |
| TGAGGGCCGAACATCAAGAA+GGG | 0.582614 | 3_3:+57635576 | None:intergenic |
| GTTTAGTTAGATTTACCAGC+CGG | 0.585164 | 3_3:-57632813 | Msa0460330:three_prime_UTR |
| ACTAATTGTTGCATGCCAGA+AGG | 0.587081 | 3_3:-57634720 | Msa0460330:CDS |
| TGTTGTGAACAGGAGGTTGG+TGG | 0.587146 | 3_3:-57634905 | Msa0460330:intron |
| AGCACCAATAAATAATGCAT+CGG | 0.589576 | 3_3:+57633014 | None:intergenic |
| TGAACAGGAGGTTGGTGGAG+TGG | 0.590157 | 3_3:-57634900 | Msa0460330:intron |
| TGTGAACTACTATATAATGC+CGG | 0.593307 | 3_3:-57634434 | Msa0460330:CDS |
| AGCGGCACTTAGAGAAATGT+AGG | 0.593525 | 3_3:+57636592 | None:intergenic |
| GTAGACAATGTTCCTTGATG+TGG | 0.594395 | 3_3:-57632910 | Msa0460330:three_prime_UTR |
| AATTAAGGTTCTTACCCCAA+GGG | 0.596376 | 3_3:-57635632 | Msa0460330:CDS |
| GAAAAGGAAGAAACAAGATG+AGG | 0.597715 | 3_3:+57636687 | None:intergenic |
| ACATAAATTTCAGAAAGCAC+CGG | 0.598587 | 3_3:+57632794 | None:intergenic |
| TGGCTGCTGCCAGAAAGAGA+TGG | 0.598638 | 3_3:-57636359 | Msa0460330:CDS |
| GAGCAGGATCTTGTCGTGGA+GGG | 0.602986 | 3_3:-57634249 | Msa0460330:intron |
| GGTAAATCTAACTAAACCAT+GGG | 0.615998 | 3_3:+57632819 | None:intergenic |
| GGAGCAGGATCTTGTCGTGG+AGG | 0.618802 | 3_3:-57634250 | Msa0460330:intron |
| AATAAGCCTCTAACAAGGGT+CGG | 0.619332 | 3_3:+57632843 | None:intergenic |
| CATAAATCCAAGTGTAGATG+GGG | 0.621172 | 3_3:-57632760 | Msa0460330:three_prime_UTR |
| ATTCGTGAATGTCAATATGT+TGG | 0.623927 | 3_3:-57632657 | Msa0460330:three_prime_UTR |
| CTCGTTCTTACCCAAAGTTG+CGG | 0.625365 | 3_3:-57634765 | Msa0460330:CDS |
| GGGCAATAAGCCTCTAACAA+GGG | 0.625685 | 3_3:+57632839 | None:intergenic |
| GAGGGCCGAACATCAAGAAG+GGG | 0.626090 | 3_3:+57635577 | None:intergenic |
| AATGGGTCCTAATCTCCTGA+AGG | 0.629009 | 3_3:+57632974 | None:intergenic |
| TGATGTTGTGAACAGGAGGT+TGG | 0.634574 | 3_3:-57634908 | Msa0460330:intron |
| TTTAGAGAATCTAGATGATG+GGG | 0.634601 | 3_3:-57636748 | Msa0460330:five_prime_UTR |
| GTCTAGTTGAAGAAGAAGGA+CGG | 0.638770 | 3_3:+57636537 | None:intergenic |
| GCCCTCAAATGAACACAACA+AGG | 0.642119 | 3_3:-57635560 | Msa0460330:intron |
| GAGTGAGGCATAATTAGTAG+CGG | 0.656820 | 3_3:+57636574 | None:intergenic |
| TGCATATCCAGCTTCCCTTG+GGG | 0.664362 | 3_3:+57635618 | None:intergenic |
| GTGTTGTAAGGAAGAGAGTG+AGG | 0.671205 | 3_3:+57636559 | None:intergenic |
| TGTGGAGCAGGATCTTGTCG+TGG | 0.697794 | 3_3:-57634253 | Msa0460330:intron |
| TTGCATGCCAGAAGGGACTG+AGG | 0.715447 | 3_3:-57634712 | Msa0460330:intron |
| TACTTGTCAAAAGACAGTGT+AGG | 0.751162 | 3_3:+57634873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATTAATAATAAGATTAG+AGG | + | chr3_3:57632640-57632659 | None:intergenic | 15.0% |
| !! | TCTAATCTTATTATTAATCA+TGG | - | chr3_3:57632639-57632658 | Msa0460330:three_prime_UTR | 15.0% |
| !!! | TTTTAAACATCTTATTGTTA+TGG | - | chr3_3:57633978-57633997 | Msa0460330:intron | 15.0% |
| !! | TTAATAGAATCAAATGTATA+AGG | + | chr3_3:57634086-57634105 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATCACCAT+GGG | + | chr3_3:57635449-57635468 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAATCACCA+TGG | + | chr3_3:57635450-57635469 | None:intergenic | 15.0% |
| !! | ATGTTAATAACTATCAATTT+CGG | - | chr3_3:57635541-57635560 | Msa0460330:intron | 15.0% |
| !!! | TCAGAACAATTTTAAAATTT+TGG | - | chr3_3:57636063-57636082 | Msa0460330:intron | 15.0% |
| !! | AATAATAAGATTAGAGGAAA+AGG | + | chr3_3:57632634-57632653 | None:intergenic | 20.0% |
| !! | AGACAAATATTAGAAATTAG+TGG | - | chr3_3:57633407-57633426 | Msa0460330:intron | 20.0% |
| !!! | AATCTAATAGTGTTTGTTAT+TGG | - | chr3_3:57633535-57633554 | Msa0460330:intron | 20.0% |
| !!! | AAAATCACAAATTTTGCTAT+GGG | - | chr3_3:57634308-57634327 | Msa0460330:intron | 20.0% |
| !! | TATAAATGTAATGAAAGAGT+CGG | + | chr3_3:57634350-57634369 | None:intergenic | 20.0% |
| !! | AATAATAAAATTGAAGTGCA+CGG | + | chr3_3:57634494-57634513 | None:intergenic | 20.0% |
| !!! | CATTCCATTTTTTAAATCTT+TGG | - | chr3_3:57634731-57634750 | Msa0460330:CDS | 20.0% |
| !! | TGAACCAAAGATTTAAAAAA+TGG | + | chr3_3:57634738-57634757 | None:intergenic | 20.0% |
| !! | GAAATTCAGAAAATTGAAAT+GGG | + | chr3_3:57634955-57634974 | None:intergenic | 20.0% |
| !! | AGAAATTCAGAAAATTGAAA+TGG | + | chr3_3:57634956-57634975 | None:intergenic | 20.0% |
| !! | GAAAATAAAAATAACTTCTC+TGG | - | chr3_3:57635003-57635022 | Msa0460330:CDS | 20.0% |
| !! | TTAGTTTAATAGTTCTCTAA+TGG | - | chr3_3:57635206-57635225 | Msa0460330:intron | 20.0% |
| !! | AAAATTACTTTATCGTTGTT+TGG | - | chr3_3:57635374-57635393 | Msa0460330:intron | 20.0% |
| !! | AAATTACTTTATCGTTGTTT+GGG | - | chr3_3:57635375-57635394 | Msa0460330:intron | 20.0% |
| !! | TAAACAATTTCAATGACAAA+AGG | - | chr3_3:57635510-57635529 | Msa0460330:intron | 20.0% |
| !! | AAACAATTTCAATGACAAAA+GGG | - | chr3_3:57635511-57635530 | Msa0460330:intron | 20.0% |
| !!! | TTACTAATCAATTTTGAGAT+CGG | - | chr3_3:57635653-57635672 | Msa0460330:intron | 20.0% |
| !!! | TTCTGAAATTTATGTCATAA+TGG | - | chr3_3:57636516-57636535 | Msa0460330:intron | 20.0% |
| !!! | TCTGAAATTTATGTCATAAT+GGG | - | chr3_3:57636517-57636536 | Msa0460330:intron | 20.0% |
| ! | AGAAAATGAAATGCTAGTTA+TGG | - | chr3_3:57633164-57633183 | Msa0460330:CDS | 25.0% |
| !! | TTATGTTTTCACAGAGTAAA+TGG | - | chr3_3:57633266-57633285 | Msa0460330:intron | 25.0% |
| ! | ATTCAATTCAACCAAAAACT+AGG | + | chr3_3:57633294-57633313 | None:intergenic | 25.0% |
| ! | TTCTTATCCTAGATATTTGT+TGG | - | chr3_3:57633315-57633334 | Msa0460330:intron | 25.0% |
| ! | TATATCACCAACAAATATCT+AGG | + | chr3_3:57633325-57633344 | None:intergenic | 25.0% |
| !!! | TGTTGGTGATATAGATTATT+TGG | - | chr3_3:57633332-57633351 | Msa0460330:intron | 25.0% |
| !!! | GTTGGTGATATAGATTATTT+GGG | - | chr3_3:57633333-57633352 | Msa0460330:intron | 25.0% |
| ! | NNNNNNCAATATATTGGCCA+AGG | + | chr3_3:57633801-57633820 | None:intergenic | 25.0% |
| ! | AAAATCACAACAATAATGTG+TGG | + | chr3_3:57634186-57634205 | None:intergenic | 25.0% |
| !! | GAAAATCACAAATTTTGCTA+TGG | - | chr3_3:57634307-57634326 | Msa0460330:intron | 25.0% |
| !! | AAATTACCGAACACATTTTA+AGG | + | chr3_3:57634681-57634700 | None:intergenic | 25.0% |
| ! | GAATGTAATTCAAAACACAA+GGG | + | chr3_3:57634716-57634735 | None:intergenic | 25.0% |
| !! | TCTTTGGTTCAATCAAATTA+TGG | - | chr3_3:57634747-57634766 | Msa0460330:CDS | 25.0% |
| ! | GCTGTACTCTTATTAAATTT+AGG | - | chr3_3:57634981-57635000 | Msa0460330:intron | 25.0% |
| ! | AAATTTAGAAGTAAGGTTAG+AGG | + | chr3_3:57635147-57635166 | None:intergenic | 25.0% |
| ! | GCATTAGAAATTTAGAAGTA+AGG | + | chr3_3:57635154-57635173 | None:intergenic | 25.0% |
| ! | ATACTTCTCACAAGTTTAAT+TGG | - | chr3_3:57635322-57635341 | Msa0460330:intron | 25.0% |
| ! | AATTACTTTATCGTTGTTTG+GGG | - | chr3_3:57635376-57635395 | Msa0460330:intron | 25.0% |
| !!! | TTTTTTTTTTCCTAGATCGA+TGG | - | chr3_3:57635571-57635590 | Msa0460330:CDS | 25.0% |
| ! | CATACAATAGATTAATTACC+AGG | + | chr3_3:57636187-57636206 | None:intergenic | 25.0% |
| ! | TTTGACATCACAAATTTGAA+TGG | - | chr3_3:57636235-57636254 | Msa0460330:intron | 25.0% |
| !!! | TTTGAGTTATTGATTTATCC+TGG | - | chr3_3:57636368-57636387 | Msa0460330:CDS | 25.0% |
| !!! | TATGCACTAATAGTGTTTTT+TGG | - | chr3_3:57636596-57636615 | Msa0460330:CDS | 25.0% |
| ! | TATTATCACATACAAGAGTT+TGG | + | chr3_3:57636622-57636641 | None:intergenic | 25.0% |
| ! | ACAACAATATAATCACAGTT+TGG | + | chr3_3:57636711-57636730 | None:intergenic | 25.0% |
| AGTTTAGAGAATCTAGATGA+TGG | - | chr3_3:57632552-57632571 | Msa0460330:three_prime_UTR | 30.0% | |
| GTTTAGAGAATCTAGATGAT+GGG | - | chr3_3:57632553-57632572 | Msa0460330:three_prime_UTR | 30.0% | |
| TTTAGAGAATCTAGATGATG+GGG | - | chr3_3:57632554-57632573 | Msa0460330:three_prime_UTR | 30.0% | |
| ! | ATTTTGAATTGAAGCAAGTC+AGG | - | chr3_3:57632916-57632935 | Msa0460330:three_prime_UTR | 30.0% |
| ! | TTTTGAATTGAAGCAAGTCA+GGG | - | chr3_3:57632917-57632936 | Msa0460330:three_prime_UTR | 30.0% |
| AAGAAACGAAAATCTTCACT+TGG | + | chr3_3:57633074-57633093 | None:intergenic | 30.0% | |
| ! | GATTATTTGGGATTTCTCAA+AGG | - | chr3_3:57633345-57633364 | Msa0460330:intron | 30.0% |
| !!! | TTGAAGGAGTTTTAAGCAAT+AGG | + | chr3_3:57633462-57633481 | None:intergenic | 30.0% |
| !! | TTTGGATGGCTGTATTTTAA+TGG | - | chr3_3:57633609-57633628 | Msa0460330:intron | 30.0% |
| !!! | TTGGATGGCTGTATTTTAAT+GGG | - | chr3_3:57633610-57633629 | Msa0460330:intron | 30.0% |
| TTTAGTTAGTTACCTCTAGT+AGG | - | chr3_3:57633930-57633949 | Msa0460330:intron | 30.0% | |
| AACATCTTATTGTTATGGTC+AGG | - | chr3_3:57633983-57634002 | Msa0460330:intron | 30.0% | |
| ! | GCAAAATTTGTGATTTTCCT+GGG | + | chr3_3:57634305-57634324 | None:intergenic | 30.0% |
| ! | AGCAAAATTTGTGATTTTCC+TGG | + | chr3_3:57634306-57634325 | None:intergenic | 30.0% |
| !! | ACAATTAGTTCTGCATCTTT+GGG | + | chr3_3:57634571-57634590 | None:intergenic | 30.0% |
| !! | AACAATTAGTTCTGCATCTT+TGG | + | chr3_3:57634572-57634591 | None:intergenic | 30.0% |
| CCATTTCCTTAAAATGTGTT+CGG | - | chr3_3:57634672-57634691 | Msa0460330:intron | 30.0% | |
| GGAATGTAATTCAAAACACA+AGG | + | chr3_3:57634717-57634736 | None:intergenic | 30.0% | |
| TTGGTTCAATCAAATTATGG+TGG | - | chr3_3:57634750-57634769 | Msa0460330:CDS | 30.0% | |
| ! | ACACTTGTTAAGTGATTAGA+TGG | + | chr3_3:57634781-57634800 | None:intergenic | 30.0% |
| TAAGGCTTACATTGTCTATT+TGG | + | chr3_3:57634807-57634826 | None:intergenic | 30.0% | |
| TGTGAACTACTATATAATGC+CGG | - | chr3_3:57634868-57634887 | Msa0460330:intron | 30.0% | |
| ! | AGAAGTATAATGTTCTAGTG+TGG | + | chr3_3:57635310-57635329 | None:intergenic | 30.0% |
| TTCTCACAAGTTTAATTGGT+TGG | - | chr3_3:57635326-57635345 | Msa0460330:intron | 30.0% | |
| ! | AATCTGGAATACATAACACA+TGG | + | chr3_3:57635749-57635768 | None:intergenic | 30.0% |
| GATCGTTTATCATGAATTCA+TGG | + | chr3_3:57635773-57635792 | None:intergenic | 30.0% | |
| TATGAACATTCTTCAACATG+CGG | + | chr3_3:57635939-57635958 | None:intergenic | 30.0% | |
| ! | TCTTTTTGCTTACAATATGC+AGG | - | chr3_3:57636009-57636028 | Msa0460330:intron | 30.0% |
| ACTGCAATATTATTTCCAGT+TGG | - | chr3_3:57636096-57636115 | Msa0460330:intron | 30.0% | |
| AGCACCAATAAATAATGCAT+CGG | + | chr3_3:57636291-57636310 | None:intergenic | 30.0% | |
| TGTAAACACAGTATCTCAAT+GGG | + | chr3_3:57636348-57636367 | None:intergenic | 30.0% | |
| ATGTAAACACAGTATCTCAA+TGG | + | chr3_3:57636349-57636368 | None:intergenic | 30.0% | |
| GGTAAATCTAACTAAACCAT+GGG | + | chr3_3:57636486-57636505 | None:intergenic | 30.0% | |
| TGGTAAATCTAACTAAACCA+TGG | + | chr3_3:57636487-57636506 | None:intergenic | 30.0% | |
| ! | ACATAAATTTCAGAAAGCAC+CGG | + | chr3_3:57636511-57636530 | None:intergenic | 30.0% |
| ATCATAAATCCAAGTGTAGA+TGG | - | chr3_3:57636540-57636559 | Msa0460330:CDS | 30.0% | |
| TCATAAATCCAAGTGTAGAT+GGG | - | chr3_3:57636541-57636560 | Msa0460330:CDS | 30.0% | |
| ATTCGTGAATGTCAATATGT+TGG | - | chr3_3:57636645-57636664 | Msa0460330:CDS | 30.0% | |
| TAATTTATCCAGCAGTAAGA+GGG | + | chr3_3:57636747-57636766 | None:intergenic | 30.0% | |
| TTAATTTATCCAGCAGTAAG+AGG | + | chr3_3:57636748-57636767 | None:intergenic | 30.0% | |
| TCTTACTGCTGGATAAATTA+AGG | - | chr3_3:57636747-57636766 | Msa0460330:five_prime_UTR | 30.0% | |
| GAAAAGGAAGAAACAAGATG+AGG | + | chr3_3:57632618-57632637 | None:intergenic | 35.0% | |
| ! | GAATTGGTAACAGTGATTGT+GGG | + | chr3_3:57632679-57632698 | None:intergenic | 35.0% |
| ACTTAGAGAAATGTAGGTGT+TGG | + | chr3_3:57632707-57632726 | None:intergenic | 35.0% | |
| TTCTGTCTAGTTGAAGAAGA+AGG | + | chr3_3:57632772-57632791 | None:intergenic | 35.0% | |
| TTCAACTAGACAGAAGTCTA+TGG | - | chr3_3:57632777-57632796 | Msa0460330:three_prime_UTR | 35.0% | |
| ! | TCATTTTCTCTCGACCATAA+TGG | + | chr3_3:57633153-57633172 | None:intergenic | 35.0% |
| !! | AGTAAATGGAGCCTAGTTTT+TGG | - | chr3_3:57633280-57633299 | Msa0460330:intron | 35.0% |
| ATTCGATCCAGAAACTAACA+TGG | + | chr3_3:57633433-57633452 | None:intergenic | 35.0% | |
| ! | TTAGTTTCTGGATCGAATCT+GGG | - | chr3_3:57633435-57633454 | Msa0460330:intron | 35.0% |
| !!! | TGGATGGCTGTATTTTAATG+GGG | - | chr3_3:57633611-57633630 | Msa0460330:intron | 35.0% |
| GCTCAGGGATGAAAAAATTA+AGG | - | chr3_3:57633655-57633674 | Msa0460330:intron | 35.0% | |
| AAATTAAGGTTCTTACCCCA+AGG | - | chr3_3:57633669-57633688 | Msa0460330:intron | 35.0% | |
| AATTAAGGTTCTTACCCCAA+GGG | - | chr3_3:57633670-57633689 | Msa0460330:intron | 35.0% | |
| ! | ACCTTGTTGTGTTCATTTGA+GGG | + | chr3_3:57633746-57633765 | None:intergenic | 35.0% |
| ! | AACCTTGTTGTGTTCATTTG+AGG | + | chr3_3:57633747-57633766 | None:intergenic | 35.0% |
| !! | GCTCTTTTTGCATGTTTTGA+AGG | - | chr3_3:57634211-57634230 | Msa0460330:CDS | 35.0% |
| !!! | TTTTGCATGTTTTGAAGGCA+TGG | - | chr3_3:57634216-57634235 | Msa0460330:CDS | 35.0% |
| !!! | TTTGCATGTTTTGAAGGCAT+GGG | - | chr3_3:57634217-57634236 | Msa0460330:CDS | 35.0% |
| GACATTGAATATTGGAATCC+AGG | + | chr3_3:57634255-57634274 | None:intergenic | 35.0% | |
| CCATCATCGACATTGAATAT+TGG | + | chr3_3:57634263-57634282 | None:intergenic | 35.0% | |
| CCAATATTCAATGTCGATGA+TGG | - | chr3_3:57634260-57634279 | Msa0460330:intron | 35.0% | |
| ! | ATTTGTGATTTTCCTGGGAA+TGG | + | chr3_3:57634300-57634319 | None:intergenic | 35.0% |
| TACTTGTCAAAAGACAGTGT+AGG | + | chr3_3:57634432-57634451 | None:intergenic | 35.0% | |
| !! | CAATTAGTTCTGCATCTTTG+GGG | + | chr3_3:57634570-57634589 | None:intergenic | 35.0% |
| GTGAGCTCTATACATTCAAT+AGG | - | chr3_3:57634612-57634631 | Msa0460330:intron | 35.0% | |
| !! | CCGAACACATTTTAAGGAAA+TGG | + | chr3_3:57634675-57634694 | None:intergenic | 35.0% |
| ATCAGGTTCAGAACAACATA+AGG | + | chr3_3:57634825-57634844 | None:intergenic | 35.0% | |
| ! | TTAATCCTTTTGGTCTGTTG+TGG | - | chr3_3:57635031-57635050 | Msa0460330:CDS | 35.0% |
| CAATTTCAATGACAAAAGGG+AGG | - | chr3_3:57635514-57635533 | Msa0460330:intron | 35.0% | |
| ! | TAGCATGTAGTGTCATCTTT+TGG | + | chr3_3:57635631-57635650 | None:intergenic | 35.0% |
| ATCATGAATTCATGGCAATC+TGG | + | chr3_3:57635765-57635784 | None:intergenic | 35.0% | |
| ! | GGGATACAGATTAGTGTTTT+CGG | - | chr3_3:57636157-57636176 | Msa0460330:intron | 35.0% |
| GTTGCCGATGCATTATTTAT+TGG | - | chr3_3:57636284-57636303 | Msa0460330:intron | 35.0% | |
| ! | TTTATTGGTGCTCAGCAAAT+TGG | - | chr3_3:57636299-57636318 | Msa0460330:intron | 35.0% |
| ! | TTATTGGTGCTCAGCAAATT+GGG | - | chr3_3:57636300-57636319 | Msa0460330:intron | 35.0% |
| ! | CTATTTTCTCATCCACATCA+AGG | + | chr3_3:57636407-57636426 | None:intergenic | 35.0% |
| GATGAGAAAATAGAGACAAC+TGG | - | chr3_3:57636414-57636433 | Msa0460330:CDS | 35.0% | |
| GTTTAGTTAGATTTACCAGC+CGG | - | chr3_3:57636489-57636508 | Msa0460330:intron | 35.0% | |
| CATAAATCCAAGTGTAGATG+GGG | - | chr3_3:57636542-57636561 | Msa0460330:CDS | 35.0% | |
| ! | GGAATTGGTAACAGTGATTG+TGG | + | chr3_3:57632680-57632699 | None:intergenic | 40.0% |
| !! | AGAAATGTAGGTGTTGGTGT+TGG | + | chr3_3:57632701-57632720 | None:intergenic | 40.0% |
| GAGTGAGGCATAATTAGTAG+CGG | + | chr3_3:57632731-57632750 | None:intergenic | 40.0% | |
| GTCTAGTTGAAGAAGAAGGA+CGG | + | chr3_3:57632768-57632787 | None:intergenic | 40.0% | |
| ACTAGACAGAAGTCTATGGT+TGG | - | chr3_3:57632781-57632800 | Msa0460330:three_prime_UTR | 40.0% | |
| ACAACACTCTTCTTCTGCAA+AGG | + | chr3_3:57632873-57632892 | None:intergenic | 40.0% | |
| ATTGAAGCAAGTCAGGGATA+TGG | - | chr3_3:57632923-57632942 | Msa0460330:three_prime_UTR | 40.0% | |
| ACTCTTGAAGCGAACCATTA+TGG | - | chr3_3:57633136-57633155 | Msa0460330:intron | 40.0% | |
| TTGGGATTTCTCAAAGGCTT+TGG | - | chr3_3:57633351-57633370 | Msa0460330:intron | 40.0% | |
| TGGGATTTCTCAAAGGCTTT+GGG | - | chr3_3:57633352-57633371 | Msa0460330:intron | 40.0% | |
| ! | TTAGTGGCCATGTTAGTTTC+TGG | - | chr3_3:57633423-57633442 | Msa0460330:intron | 40.0% |
| ! | GTTAGTTTCTGGATCGAATC+TGG | - | chr3_3:57633434-57633453 | Msa0460330:intron | 40.0% |
| GGTAAGGTAAGAGACATTGA+AGG | + | chr3_3:57633478-57633497 | None:intergenic | 40.0% | |
| ! | GATCTTCTTTTGCGTTTGGA+TGG | - | chr3_3:57633595-57633614 | Msa0460330:intron | 40.0% |
| !!! | GGATGGCTGTATTTTAATGG+GGG | - | chr3_3:57633612-57633631 | Msa0460330:intron | 40.0% |
| !! | GCTCTTGCTTTTGTTTACCT+TGG | - | chr3_3:57633781-57633800 | Msa0460330:intron | 40.0% |
| AGTTAGTTACCTCTAGTAGG+AGG | - | chr3_3:57633933-57633952 | Msa0460330:intron | 40.0% | |
| CTGTCATGAGTGATTGATCT+TGG | - | chr3_3:57634021-57634040 | Msa0460330:intron | 40.0% | |
| GCTTTCAACAGTTACTACCA+AGG | + | chr3_3:57634048-57634067 | None:intergenic | 40.0% | |
| TTTGACCTGATGTTGTGAAC+AGG | - | chr3_3:57634387-57634406 | Msa0460330:CDS | 40.0% | |
| ACTAATTGTTGCATGCCAGA+AGG | - | chr3_3:57634582-57634601 | Msa0460330:intron | 40.0% | |
| CTAATTGTTGCATGCCAGAA+GGG | - | chr3_3:57634583-57634602 | Msa0460330:intron | 40.0% | |
| ! | GTTGTTCTGAACCTGATTGT+TGG | - | chr3_3:57634828-57634847 | Msa0460330:intron | 40.0% |
| TAATGATCTGGCCAACAATC+AGG | + | chr3_3:57634842-57634861 | None:intergenic | 40.0% | |
| TTCACAAGCAGCTAATGATC+TGG | + | chr3_3:57634854-57634873 | None:intergenic | 40.0% | |
| !!! | ACAAACCTGTTTTGGGTTCA+AGG | - | chr3_3:57634895-57634914 | Msa0460330:CDS | 40.0% |
| ! | TCTGGTGAGCTTAATCCTTT+TGG | - | chr3_3:57635021-57635040 | Msa0460330:CDS | 40.0% |
| CCAATTCCAGCAAACTTAAG+AGG | + | chr3_3:57635086-57635105 | None:intergenic | 40.0% | |
| !! | CCTCTTAAGTTTGCTGGAAT+TGG | - | chr3_3:57635083-57635102 | Msa0460330:intron | 40.0% |
| !! | CTTAAGTTTGCTGGAATTGG+TGG | - | chr3_3:57635086-57635105 | Msa0460330:intron | 40.0% |
| TGAGATTAGATAGCTACCCA+AGG | + | chr3_3:57635124-57635143 | None:intergenic | 40.0% | |
| AATAGACTGTCCATCGATCT+AGG | + | chr3_3:57635584-57635603 | None:intergenic | 40.0% | |
| TAGATCGATGGACAGTCTAT+TGG | - | chr3_3:57635583-57635602 | Msa0460330:CDS | 40.0% | |
| ! | ATGTAGTGTCATCTTTTGGC+AGG | + | chr3_3:57635627-57635646 | None:intergenic | 40.0% |
| GAAGAATGTTCATAGCTCGT+TGG | - | chr3_3:57635945-57635964 | Msa0460330:intron | 40.0% | |
| TCTTTGTTGATCAGTCCAAC+TGG | + | chr3_3:57636114-57636133 | None:intergenic | 40.0% | |
| TGAATGGTTCTTGCGTAGAT+TGG | - | chr3_3:57636251-57636270 | Msa0460330:intron | 40.0% | |
| GTAGACAATGTTCCTTGATG+TGG | - | chr3_3:57636392-57636411 | Msa0460330:CDS | 40.0% | |
| AAAATAGAGACAACTGGCTG+AGG | - | chr3_3:57636420-57636439 | Msa0460330:CDS | 40.0% | |
| AATAAGCCTCTAACAAGGGT+CGG | + | chr3_3:57636462-57636481 | None:intergenic | 40.0% | |
| CACTATTAGTGCATAGCACA+TGG | + | chr3_3:57636591-57636610 | None:intergenic | 40.0% | |
| GGTAACAGTGATTGTGGGAA+GGG | + | chr3_3:57632674-57632693 | None:intergenic | 45.0% | |
| TGGTAACAGTGATTGTGGGA+AGG | + | chr3_3:57632675-57632694 | None:intergenic | 45.0% | |
| !! | GTAGGTGTTGGTGTTGGAAT+TGG | + | chr3_3:57632695-57632714 | None:intergenic | 45.0% |
| AGCGGCACTTAGAGAAATGT+AGG | + | chr3_3:57632713-57632732 | None:intergenic | 45.0% | |
| GTGTTGTAAGGAAGAGAGTG+AGG | + | chr3_3:57632746-57632765 | None:intergenic | 45.0% | |
| !! | AGAAGAAGGACGGTGTTGTA+AGG | + | chr3_3:57632758-57632777 | None:intergenic | 45.0% |
| AGTTTACTAAAGAGCCGCGT+AGG | + | chr3_3:57633511-57633530 | None:intergenic | 45.0% | |
| ! | CTGCGATCTTCTTTTGCGTT+TGG | - | chr3_3:57633591-57633610 | Msa0460330:intron | 45.0% |
| CGTGTTTGCTTTGTAGCTCA+GGG | - | chr3_3:57633640-57633659 | Msa0460330:intron | 45.0% | |
| ACAAGCCCCTTCTTGATGTT+CGG | - | chr3_3:57633720-57633739 | Msa0460330:intron | 45.0% | |
| GCCCTCAAATGAACACAACA+AGG | - | chr3_3:57633742-57633761 | Msa0460330:intron | 45.0% | |
| AAAAGCAAGAGCTGCGTCAT+AGG | + | chr3_3:57633773-57633792 | None:intergenic | 45.0% | |
| TAGTAGGAGGTGACAAGGAA+AGG | - | chr3_3:57633946-57633965 | Msa0460330:intron | 45.0% | |
| GAGTGATTGATCTTGGACCT+TGG | - | chr3_3:57634028-57634047 | Msa0460330:intron | 45.0% | |
| !!! | GTTTTGAAGGCATGGGTGAA+AGG | - | chr3_3:57634224-57634243 | Msa0460330:CDS | 45.0% |
| ! | GTCGATGATGGTCTAGATGT+TGG | - | chr3_3:57634272-57634291 | Msa0460330:intron | 45.0% |
| TAGATGTTGGAACCATTCCC+AGG | - | chr3_3:57634285-57634304 | Msa0460330:intron | 45.0% | |
| AACCTCCTGTTCACAACATC+AGG | + | chr3_3:57634395-57634414 | None:intergenic | 45.0% | |
| TGATGTTGTGAACAGGAGGT+TGG | - | chr3_3:57634394-57634413 | Msa0460330:CDS | 45.0% | |
| CTCGTTCTTACCCAAAGTTG+CGG | - | chr3_3:57634537-57634556 | Msa0460330:intron | 45.0% | |
| CCAAAACAGGTTTGTGTAGC+CGG | + | chr3_3:57634890-57634909 | None:intergenic | 45.0% | |
| ! | CGGCTACACAAACCTGTTTT+GGG | - | chr3_3:57634888-57634907 | Msa0460330:CDS | 45.0% |
| !!! | AACCTGTTTTGGGTTCAAGG+AGG | - | chr3_3:57634898-57634917 | Msa0460330:intron | 45.0% |
| CTTTGATGCTGCTGAAGAAG+AGG | - | chr3_3:57634921-57634940 | Msa0460330:intron | 45.0% | |
| !! | TGCTGGAATTGGTGGTGTTT+CGG | - | chr3_3:57635094-57635113 | Msa0460330:intron | 45.0% |
| GTGGTGTTTCGGAATTCCTT+GGG | - | chr3_3:57635105-57635124 | Msa0460330:intron | 45.0% | |
| TGATGCATGTTGAAGACCCA+TGG | - | chr3_3:57635430-57635449 | Msa0460330:intron | 45.0% | |
| AATGGGTCCTAATCTCCTGA+AGG | + | chr3_3:57636331-57636350 | None:intergenic | 45.0% | |
| CAAGGAACATTGTCTACACC+AGG | + | chr3_3:57636389-57636408 | None:intergenic | 45.0% | |
| GGGCAATAAGCCTCTAACAA+GGG | + | chr3_3:57636466-57636485 | None:intergenic | 45.0% | |
| TGGGCAATAAGCCTCTAACA+AGG | + | chr3_3:57636467-57636486 | None:intergenic | 45.0% | |
| TGTTAGAGGCTTATTGCCCA+TGG | - | chr3_3:57636467-57636486 | Msa0460330:intron | 45.0% | |
| !! | AAATTTCAGAAAGCACCGGC+TGG | + | chr3_3:57636507-57636526 | None:intergenic | 45.0% |
| !! | ATGGGGTGTGGTTCTAGTTT+AGG | - | chr3_3:57636559-57636578 | Msa0460330:CDS | 45.0% |
| AACAGAAACCCTCTTACTGC+TGG | - | chr3_3:57636736-57636755 | Msa0460330:five_prime_UTR | 45.0% | |
| GGGTGCATGCTTGCTTAGTT+AGG | - | chr3_3:57632574-57632593 | Msa0460330:three_prime_UTR | 50.0% | |
| CAGAGCTTCCCATCTCTTTC+TGG | + | chr3_3:57632955-57632974 | None:intergenic | 50.0% | |
| CAGAAAGAGATGGGAAGCTC+TGG | - | chr3_3:57632953-57632972 | Msa0460330:exon | 50.0% | |
| GCGTGTTTGCTTTGTAGCTC+AGG | - | chr3_3:57633639-57633658 | Msa0460330:intron | 50.0% | |
| TGCATATCCAGCTTCCCTTG+GGG | + | chr3_3:57633687-57633706 | None:intergenic | 50.0% | |
| CTGCATATCCAGCTTCCCTT+GGG | + | chr3_3:57633688-57633707 | None:intergenic | 50.0% | |
| ACTGCATATCCAGCTTCCCT+TGG | + | chr3_3:57633689-57633708 | None:intergenic | 50.0% | |
| TGAGGGCCGAACATCAAGAA+GGG | + | chr3_3:57633729-57633748 | None:intergenic | 50.0% | |
| TTGAGGGCCGAACATCAAGA+AGG | + | chr3_3:57633730-57633749 | None:intergenic | 50.0% | |
| ACCTCTAGTAGGAGGTGACA+AGG | - | chr3_3:57633941-57633960 | Msa0460330:intron | 50.0% | |
| TCCTTGTCACCTCCTACTAG+AGG | + | chr3_3:57633945-57633964 | None:intergenic | 50.0% | |
| CATGGGTGAAAGGTTCAACC+TGG | - | chr3_3:57634234-57634253 | Msa0460330:CDS | 50.0% | |
| GACCTGATGTTGTGAACAGG+AGG | - | chr3_3:57634390-57634409 | Msa0460330:CDS | 50.0% | |
| TGTTGTGAACAGGAGGTTGG+TGG | - | chr3_3:57634397-57634416 | Msa0460330:CDS | 50.0% | |
| GGGAACTTCTCCGCAACTTT+GGG | + | chr3_3:57634550-57634569 | None:intergenic | 50.0% | |
| ! | CCGGCTACACAAACCTGTTT+TGG | - | chr3_3:57634887-57634906 | Msa0460330:CDS | 50.0% |
| AGCCTCCTTGAACCCAAAAC+AGG | + | chr3_3:57634903-57634922 | None:intergenic | 50.0% | |
| CTGCTCCACAACAGACCAAA+AGG | + | chr3_3:57635039-57635058 | None:intergenic | 50.0% | |
| ! | CTTTTGGTCTGTTGTGGAGC+AGG | - | chr3_3:57635037-57635056 | Msa0460330:CDS | 50.0% |
| TCAGCGCCTCTTAAGTTTGC+TGG | - | chr3_3:57635077-57635096 | Msa0460330:intron | 50.0% | |
| GGTGGTGTTTCGGAATTCCT+TGG | - | chr3_3:57635104-57635123 | Msa0460330:intron | 50.0% | |
| TGGGGCATGACATAGAGCAT+AGG | - | chr3_3:57635394-57635413 | Msa0460330:intron | 50.0% | |
| ! | ATTAGTGTTTTCGGCACGCC+TGG | - | chr3_3:57636166-57636185 | Msa0460330:intron | 50.0% |
| GCAAATTGGGCACTACCTTC+AGG | - | chr3_3:57636313-57636332 | Msa0460330:intron | 50.0% | |
| GGCACTACCTTCAGGAGATT+AGG | - | chr3_3:57636321-57636340 | Msa0460330:intron | 50.0% | |
| TGAATGCCGACCCTTGTTAG+AGG | - | chr3_3:57636453-57636472 | Msa0460330:intron | 50.0% | |
| ATCCAAGTGTAGATGGGGTG+TGG | - | chr3_3:57636547-57636566 | Msa0460330:CDS | 50.0% | |
| AACCACACCCCATCTACACT+TGG | + | chr3_3:57636552-57636571 | None:intergenic | 50.0% | |
| TGGCTGCTGCCAGAAAGAGA+TGG | - | chr3_3:57632943-57632962 | Msa0460330:three_prime_UTR | 55.0% | |
| GGCTGCTGCCAGAAAGAGAT+GGG | - | chr3_3:57632944-57632963 | Msa0460330:three_prime_UTR | 55.0% | |
| ! | CGTAGGTAGCTCGGTTGGTA+AGG | + | chr3_3:57633494-57633513 | None:intergenic | 55.0% |
| TACCAACCGAGCTACCTACG+CGG | - | chr3_3:57633494-57633513 | Msa0460330:intron | 55.0% | |
| AAAGAGCCGCGTAGGTAGCT+CGG | + | chr3_3:57633503-57633522 | None:intergenic | 55.0% | |
| GTTCTTACCCCAAGGGAAGC+TGG | - | chr3_3:57633677-57633696 | Msa0460330:intron | 55.0% | |
| GAGGGCCGAACATCAAGAAG+GGG | + | chr3_3:57633728-57633747 | None:intergenic | 55.0% | |
| !! | TGAACAGGAGGTTGGTGGAG+TGG | - | chr3_3:57634402-57634421 | Msa0460330:CDS | 55.0% |
| GGGGAACTTCTCCGCAACTT+TGG | + | chr3_3:57634551-57634570 | None:intergenic | 55.0% | |
| TTGCATGCCAGAAGGGACTG+AGG | - | chr3_3:57634590-57634609 | Msa0460330:intron | 55.0% | |
| TGTGGAGCAGGATCTTGTCG+TGG | - | chr3_3:57635049-57635068 | Msa0460330:CDS | 55.0% | |
| GAGCAGGATCTTGTCGTGGA+GGG | - | chr3_3:57635053-57635072 | Msa0460330:CDS | 55.0% | |
| ACAAAGAGCTGCTGCAGCCA+AGG | - | chr3_3:57636127-57636146 | Msa0460330:intron | 55.0% | |
| TCTGTATCCCCAGCCTTCCT+TGG | + | chr3_3:57636147-57636166 | None:intergenic | 55.0% | |
| GAGCTCACCTCAGTCCCTTC+TGG | + | chr3_3:57634600-57634619 | None:intergenic | 60.0% | |
| GGAGCAGGATCTTGTCGTGG+AGG | - | chr3_3:57635052-57635071 | Msa0460330:CDS | 60.0% | |
| AGAGCTGCTGCAGCCAAGGA+AGG | - | chr3_3:57636131-57636150 | Msa0460330:intron | 60.0% | |
| TGCTGCAGCCAAGGAAGGCT+GGG | - | chr3_3:57636136-57636155 | Msa0460330:intron | 60.0% | |
| AGCCGCGTAGGTAGCTCGGT+TGG | + | chr3_3:57633499-57633518 | None:intergenic | 65.0% | |
| CTGCTGCAGCCAAGGAAGGC+TGG | - | chr3_3:57636135-57636154 | Msa0460330:intron | 65.0% | |
| GCTGCAGCCAAGGAAGGCTG+GGG | - | chr3_3:57636137-57636156 | Msa0460330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57632527 | 57636797 | 57632527 | ID=Msa0460330;Name=Msa0460330 |
| chr3_3 | mRNA | 57632527 | 57636797 | 57632527 | ID=Msa0460330-mRNA-1;Parent=Msa0460330;Name=Msa0460330-mRNA-1;_AED=0.14;_eAED=0.14;_QI=131|1|1|1|1|1|10|445|289 |
| chr3_3 | exon | 57632527 | 57633055 | 57632527 | ID=Msa0460330-mRNA-1:exon:11766;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57633137 | 57633209 | 57633137 | ID=Msa0460330-mRNA-1:exon:11765;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57634198 | 57634265 | 57634198 | ID=Msa0460330-mRNA-1:exon:11764;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57634382 | 57634469 | 57634382 | ID=Msa0460330-mRNA-1:exon:11763;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57634713 | 57634787 | 57634713 | ID=Msa0460330-mRNA-1:exon:11762;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57634876 | 57634915 | 57634876 | ID=Msa0460330-mRNA-1:exon:11761;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57634995 | 57635091 | 57634995 | ID=Msa0460330-mRNA-1:exon:11760;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57635561 | 57635668 | 57635561 | ID=Msa0460330-mRNA-1:exon:11759;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57636350 | 57636445 | 57636350 | ID=Msa0460330-mRNA-1:exon:11758;Parent=Msa0460330-mRNA-1 |
| chr3_3 | exon | 57636526 | 57636797 | 57636526 | ID=Msa0460330-mRNA-1:exon:11757;Parent=Msa0460330-mRNA-1 |
| chr3_3 | five_prime_UTR | 57636667 | 57636797 | 57636667 | ID=Msa0460330-mRNA-1:five_prime_utr;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57636526 | 57636666 | 57636526 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57636350 | 57636445 | 57636350 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57635561 | 57635668 | 57635561 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57634995 | 57635091 | 57634995 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57634876 | 57634915 | 57634876 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57634713 | 57634787 | 57634713 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57634382 | 57634469 | 57634382 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57634198 | 57634265 | 57634198 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57633137 | 57633209 | 57633137 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | CDS | 57632972 | 57633055 | 57632972 | ID=Msa0460330-mRNA-1:cds;Parent=Msa0460330-mRNA-1 |
| chr3_3 | three_prime_UTR | 57632527 | 57632971 | 57632527 | ID=Msa0460330-mRNA-1:three_prime_utr;Parent=Msa0460330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
