AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1148780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148780 MtrunA17_Chr7g0237421 96.699 515 17 0 1 515 1 515 0.0 1033
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1148780 AT5G48830.1 43.000 500 272 6 23 515 18 511 3.04e-133 396
Msa1148780 AT5G48830.2 42.406 507 271 8 23 515 18 517 1.60e-128 384

Find 125 sgRNAs with CRISPR-Local

Find 608 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCAAGCCGAGTGTATT+TGG 0.164191 7_4:-29294470 Msa1148780:CDS
ACTAAATTCGAAGCTAAAAT+TGG 0.194817 7_4:+29287162 None:intergenic
CGTGACAGCTCAGACATTTC+TGG 0.224603 7_4:-29294221 Msa1148780:CDS
TAAAACGGACAAAGGAATTA+AGG 0.251212 7_4:-29288492 Msa1148780:CDS
GAATTTAGTATTACTGGATT+TGG 0.253586 7_4:-29287148 Msa1148780:three_prime_UTR
CCTATGCCAATGCAGTTTAA+AGG 0.263742 7_4:+29294407 None:intergenic
TATAACTAAATCTTCTAAAA+TGG 0.287288 7_4:+29291114 None:intergenic
TAAGTCTTAACGGGTCAATT+TGG 0.296746 7_4:+29296273 None:intergenic
CACCATGGGTAGCAAATATA+CGG 0.297562 7_4:+29291140 None:intergenic
TTACTTTGGTATCTTACTTT+TGG 0.298596 7_4:-29291941 Msa1148780:CDS
AATTCAAGCCGAGTGTATTT+GGG 0.298989 7_4:-29294469 Msa1148780:CDS
AGCTTGATTGGAAGGTCTTT+AGG 0.299578 7_4:-29287392 Msa1148780:CDS
AGCTTCGAATTTAGTATTAC+TGG 0.301455 7_4:-29287154 Msa1148780:three_prime_UTR
TTTGGTGCCAGTTGTTAATC+AGG 0.309543 7_4:-29294348 Msa1148780:CDS
AAGTATATTGCTCACTTATA+TGG 0.317130 7_4:-29294312 Msa1148780:CDS
TTGAAATTCGTAGTCTGATT+CGG 0.344782 7_4:+29295895 None:intergenic
TGGGGTTGCAAGCCTCTATC+TGG 0.346988 7_4:-29291080 Msa1148780:CDS
AAGGAATTAAGGGCCCTTAC+AGG 0.347708 7_4:-29288481 Msa1148780:CDS
GAGCCAACCCATTGATTTAC+CGG 0.350122 7_4:-29288626 Msa1148780:CDS
CTGCATTGGCATAGGAGCTT+TGG 0.353548 7_4:-29294399 Msa1148780:CDS
TCCACTTTCCTAAGTCTTAA+CGG 0.359856 7_4:+29296263 None:intergenic
ATATGCAGCTTAGCACAAAA+TGG 0.362160 7_4:+29295952 None:intergenic
TCCAAAGTTAAGGTTACTTT+GGG 0.362833 7_4:-29293932 Msa1148780:CDS
GTCCAAAGTTAAGGTTACTT+TGG 0.374599 7_4:-29293933 Msa1148780:CDS
TGAAATTCGTAGTCTGATTC+GGG 0.385125 7_4:+29295896 None:intergenic
AAATTGGCTTGATCTCAATA+TGG 0.390813 7_4:+29287178 None:intergenic
TGCTTTCGGTTGGTCGTTTG+AGG 0.390985 7_4:-29287238 Msa1148780:three_prime_UTR
GGGAAGGGTGAATGTGTAAA+AGG 0.392111 7_4:+29295916 None:intergenic
TTGCTGAGGGTCCAAAGTTA+AGG 0.404199 7_4:-29293942 Msa1148780:CDS
TCTTTAGGACTCATTTATAC+AGG 0.405898 7_4:-29287377 Msa1148780:CDS
ATTCGAAATAGCATTGCTTT+CGG 0.413433 7_4:-29287252 Msa1148780:three_prime_UTR
CCACTTTCCTAAGTCTTAAC+GGG 0.417600 7_4:+29296264 None:intergenic
TCTAAATGCATTAGAGAAAG+AGG 0.418471 7_4:-29294022 Msa1148780:CDS
ATCTGTATTCAGAATTACTT+TGG 0.422723 7_4:-29291955 Msa1148780:CDS
CGGGTATAAGATTTGTCAAC+AGG 0.422732 7_4:+29294278 None:intergenic
CGTTTCGAGTTCTGTTGGTA+TGG 0.426492 7_4:-29293364 Msa1148780:CDS
CTATGCCAATGCAGTTTAAA+GGG 0.428883 7_4:+29294408 None:intergenic
GCCATTCTATCTGTGCTAGA+TGG 0.430764 7_4:-29293299 Msa1148780:CDS
AAATTGACCCGTTAAGACTT+AGG 0.431279 7_4:-29296271 Msa1148780:five_prime_UTR
TGGTGGAACAGCATCTAATT+TGG 0.431361 7_4:-29294366 Msa1148780:CDS
TATGCAGCTTAGCACAAAAT+GGG 0.433593 7_4:+29295953 None:intergenic
AGAGTGAGAGTGAAGTTGGC+GGG 0.443940 7_4:+29296161 None:intergenic
GACTCATTTATACAGGCATT+AGG 0.445461 7_4:-29287370 Msa1148780:CDS
TTAATGACTGTTCTAACAAT+CGG 0.446112 7_4:+29287449 None:intergenic
AAAACGGACAAAGGAATTAA+GGG 0.451121 7_4:-29288491 Msa1148780:CDS
ACTGCTGTCCGGTAAATCAA+TGG 0.455287 7_4:+29288618 None:intergenic
GCCATCTAGCACAGATAGAA+TGG 0.456632 7_4:+29293298 None:intergenic
GCCCAAAGTAACCTTAACTT+TGG 0.458602 7_4:+29293931 None:intergenic
AAAAGAACCTGATTAACAAC+TGG 0.461741 7_4:+29294341 None:intergenic
AGAAAACATACCATCCTGTA+AGG 0.462480 7_4:+29288467 None:intergenic
TTCTATCTGTGCTAGATGGC+TGG 0.464751 7_4:-29293295 Msa1148780:CDS
AGAAGATTTAGTTATAGCTC+TGG 0.472303 7_4:-29291107 Msa1148780:CDS
CCTTTAAACTGCATTGGCAT+AGG 0.475909 7_4:-29294407 Msa1148780:CDS
CAGAAATAAACTCCAGATAG+AGG 0.478817 7_4:+29291068 None:intergenic
CTGTGCTAGATGGCTGGAAA+AGG 0.479570 7_4:-29293289 Msa1148780:CDS
GTCAAGTAAAACAAATAGCT+TGG 0.481670 7_4:-29291032 Msa1148780:CDS
GAAATAGCATTGCTTTCGGT+TGG 0.481927 7_4:-29287248 Msa1148780:three_prime_UTR
TTGCAGTGCAGTGCAGCAAA+AGG 0.483671 7_4:-29294100 Msa1148780:intron
ACTAAGCTCACTTCCATTTG+AGG 0.484333 7_4:+29287342 None:intergenic
GCATTCCCTTTAAACTGCAT+TGG 0.486845 7_4:-29294413 Msa1148780:CDS
CTAAGCTCACTTCCATTTGA+GGG 0.487932 7_4:+29287343 None:intergenic
AGCTGCATATGCAGCAGAGA+AGG 0.488506 7_4:-29295939 Msa1148780:CDS
GCATTAGGCAGTCCCTCAAA+TGG 0.493967 7_4:-29287355 Msa1148780:CDS
AGTGAGAGTGAGAGTGAAGT+TGG 0.501180 7_4:+29296157 None:intergenic
GTACAGAACATTACAAGGTC+TGG 0.502247 7_4:-29291986 Msa1148780:CDS
ATATTGCTCACTTATATGGC+TGG 0.502407 7_4:-29294308 Msa1148780:CDS
TTAGTTATAGCTCTGGCAGA+TGG 0.505131 7_4:-29291100 Msa1148780:CDS
TCCCGTATATTTGCTACCCA+TGG 0.505444 7_4:-29291142 Msa1148780:CDS
GGAGCTTTGGTTGACTCTGA+TGG 0.508159 7_4:-29294386 Msa1148780:CDS
TTCAGGTGGCTTTGAACCAG+TGG 0.510210 7_4:-29288714 Msa1148780:intron
TAGTTATAGCTCTGGCAGAT+GGG 0.514515 7_4:-29291099 Msa1148780:CDS
CTAAAATTGTGACATAAATG+AGG 0.516195 7_4:+29287290 None:intergenic
ATTTCTCAATGCCCATAAAA+CGG 0.516499 7_4:-29288507 Msa1148780:CDS
CCCGTTAAGACTTAGGAAAG+TGG 0.518652 7_4:-29296264 Msa1148780:five_prime_UTR
TTAGAGAAAGAGGCTTATGC+GGG 0.522119 7_4:-29294012 Msa1148780:CDS
TTGTCAGTCTGACTGCTGTC+CGG 0.526678 7_4:+29288607 None:intergenic
CTGCTGTCCGGTAAATCAAT+GGG 0.534814 7_4:+29288619 None:intergenic
TCAAGCGTTTCGAGTTCTGT+TGG 0.539894 7_4:-29293369 Msa1148780:CDS
TAAAATTGTGACATAAATGA+GGG 0.540137 7_4:+29287291 None:intergenic
CACAGTTGTGTCAATGTATG+AGG 0.540761 7_4:-29288674 Msa1148780:CDS
CCATGTTGTGGTACAACCAC+TGG 0.543771 7_4:+29288698 None:intergenic
AGTTTAAAAGCTGTTGCTGA+GGG 0.544706 7_4:-29293955 Msa1148780:CDS
GATGAGAATGAGATGAGGAT+TGG 0.547636 7_4:+29296204 None:intergenic
AACTTCACTCTCACTCTCAC+TGG 0.548219 7_4:-29296155 Msa1148780:intron
GAATGAGATGAGGATTGGAT+TGG 0.560060 7_4:+29296209 None:intergenic
TTCTAAAATGGAAACACCAT+GGG 0.562854 7_4:+29291126 None:intergenic
TGTCAGACAGCTCAAGAAGA+AGG 0.563566 7_4:+29287480 None:intergenic
GAGAGTGAGAGTGAAGTTGG+CGG 0.563816 7_4:+29296160 None:intergenic
GAGTTTAAAAGCTGTTGCTG+AGG 0.564518 7_4:-29293956 Msa1148780:CDS
AGTTATAGCTCTGGCAGATG+GGG 0.577816 7_4:-29291098 Msa1148780:CDS
ACAATATAACTCACGTGACA+TGG 0.583903 7_4:+29288543 None:intergenic
TGTAAAAGGCAACACTCACC+AGG 0.584076 7_4:-29293256 Msa1148780:intron
ACCATGGGTAGCAAATATAC+GGG 0.584532 7_4:+29291141 None:intergenic
CTTCTAAAATGGAAACACCA+TGG 0.584695 7_4:+29291125 None:intergenic
ATTCAAGCCGAGTGTATTTG+GGG 0.587572 7_4:-29294468 Msa1148780:CDS
GTCAGACTGACAAACAAAGT+TGG 0.589106 7_4:-29288597 Msa1148780:CDS
AAGTAAAACAAATAGCTTGG+AGG 0.590770 7_4:-29291029 Msa1148780:CDS
CCAGTGGTTGTACCACAACA+TGG 0.599413 7_4:-29288698 Msa1148780:CDS
ATTAGAGAAAGAGGCTTATG+CGG 0.602745 7_4:-29294013 Msa1148780:CDS
GAGTGAGAGTGAAGTTGGCG+GGG 0.602962 7_4:+29296162 None:intergenic
TTAAAGGGAATGCCCGAAGA+CGG 0.603373 7_4:+29294423 None:intergenic
AGACTGACAAACAAAGTTGG+TGG 0.604196 7_4:-29288594 Msa1148780:CDS
TTCGTAGTCTGATTCGGGAA+GGG 0.604451 7_4:+29295901 None:intergenic
CGAATTTCAAGACTGCTCCA+AGG 0.605240 7_4:-29295882 Msa1148780:intron
TTATTGTACAGAACATTACA+AGG 0.605422 7_4:-29291991 Msa1148780:CDS
ATTCGTAGTCTGATTCGGGA+AGG 0.615676 7_4:+29295900 None:intergenic
AAGTTGGCGGGGAAAGCAAG+AGG 0.617544 7_4:+29296173 None:intergenic
GCTTTGGTTGACTCTGATGG+TGG 0.626948 7_4:-29294383 Msa1148780:CDS
AAATTGTGACATAAATGAGG+GGG 0.627713 7_4:+29287293 None:intergenic
GAAAACATACCATCCTGTAA+GGG 0.627936 7_4:+29288468 None:intergenic
TGTCCGGTAAATCAATGGGT+TGG 0.635585 7_4:+29288623 None:intergenic
AATGCCCATAAAACGGACAA+AGG 0.635965 7_4:-29288500 Msa1148780:CDS
AATTAAGGGCCCTTACAGGA+TGG 0.638743 7_4:-29288477 Msa1148780:intron
ACACAACTGTGTCCATGTTG+TGG 0.650889 7_4:+29288686 None:intergenic
TCTGCAGCCCCAAATACACT+CGG 0.654793 7_4:+29294461 None:intergenic
GACTGTTCTAACAATCGGCG+TGG 0.658283 7_4:+29287454 None:intergenic
AAAATTGTGACATAAATGAG+GGG 0.667045 7_4:+29287292 None:intergenic
ATGCAGCTTAGCACAAAATG+GGG 0.668849 7_4:+29295954 None:intergenic
AATTGTGACATAAATGAGGG+GGG 0.669540 7_4:+29287294 None:intergenic
GATGTGATGAGAATGAGATG+AGG 0.672282 7_4:+29296199 None:intergenic
CAGCTTAGCACAAAATGGGG+AGG 0.672948 7_4:+29295957 None:intergenic
GTCAAATTATGTATTACATG+TGG 0.675400 7_4:-29294067 Msa1148780:CDS
ACAGCTCAGACATTTCTGGT+AGG 0.677195 7_4:-29294217 Msa1148780:intron
TAGAGAAAGAGGCTTATGCG+GGG 0.683596 7_4:-29294011 Msa1148780:CDS
AGAGAAAGAGGCTTATGCGG+GGG 0.688620 7_4:-29294010 Msa1148780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATAAATTTTGTAAA+GGG + chr7_4:29289626-29289645 None:intergenic 10.0%
!! TCTTAATAAAAAAATTATCA+TGG - chr7_4:29290401-29290420 Msa1148780:intron 10.0%
!!! CTTTTTATTTTTATTTTTTC+TGG - chr7_4:29291434-29291453 Msa1148780:intron 10.0%
!! AAAAAATATCTAAATACTAA+AGG + chr7_4:29291546-29291565 None:intergenic 10.0%
!!! TTTAAAATTAGATTTAAGAA+TGG + chr7_4:29292541-29292560 None:intergenic 10.0%
!!! CTGTTAATTTTACAATATTA+TGG - chr7_4:29287906-29287925 Msa1148780:intron 15.0%
!!! CTGCTATTTTTTATTTTTTT+TGG - chr7_4:29287944-29287963 Msa1148780:intron 15.0%
!!! TTTTTTATTTTTTTTGGTAG+TGG - chr7_4:29287950-29287969 Msa1148780:intron 15.0%
!!! GTATAAATTATTTAGAATGT+TGG - chr7_4:29288091-29288110 Msa1148780:intron 15.0%
!!! TTTTTATTTTTGACATATGA+TGG - chr7_4:29289164-29289183 Msa1148780:intron 15.0%
!!! GTTTTGAATAAATTTTGTAA+AGG + chr7_4:29289627-29289646 None:intergenic 15.0%
!!! TTAATTGTTAAGTTTTTTTC+AGG - chr7_4:29289919-29289938 Msa1148780:intron 15.0%
!!! TCACTTTAAAGAAAAAATTA+TGG - chr7_4:29290375-29290394 Msa1148780:intron 15.0%
!!! TTTTCAATTTTCTTTATCAA+TGG + chr7_4:29291188-29291207 None:intergenic 15.0%
!!! TAATAAAACATGTTGATTAT+TGG + chr7_4:29291232-29291251 None:intergenic 15.0%
!!! TATAACTAAATCTTCTAAAA+TGG + chr7_4:29292211-29292230 None:intergenic 15.0%
!!! AATTGAGATTTAGAATAATT+GGG - chr7_4:29293090-29293109 Msa1148780:intron 15.0%
!! ACTAGTATAATTATGAATAA+AGG - chr7_4:29293384-29293403 Msa1148780:CDS 15.0%
!!! TTTTTCCACTATTTAAAATT+TGG - chr7_4:29294550-29294569 Msa1148780:intron 15.0%
!!! TTTATCCAAATTTTAAATAG+TGG + chr7_4:29294558-29294577 None:intergenic 15.0%
!! TAGCAATTAAAATTCTAATT+TGG + chr7_4:29295083-29295102 None:intergenic 15.0%
!!! AAAATCAGTATAAATTTTCA+AGG + chr7_4:29295360-29295379 None:intergenic 15.0%
!!! AATTAAAAGTTAGTTTGAAT+TGG + chr7_4:29295422-29295441 None:intergenic 15.0%
!!! ATTATTCACTTTTATTATAG+TGG - chr7_4:29295693-29295712 Msa1148780:intron 15.0%
!! AATGTATGAGAAAATAAATG+CGG + chr7_4:29287253-29287272 None:intergenic 20.0%
!! TTACGTTTAGTGTTATAAAT+TGG - chr7_4:29287615-29287634 Msa1148780:intron 20.0%
!! AAGTTAAGAACAACATATAA+TGG + chr7_4:29288257-29288276 None:intergenic 20.0%
!! ATTATATGTTGTTCTTAACT+TGG - chr7_4:29288256-29288275 Msa1148780:intron 20.0%
!! TTTGTACTAAATATTATCAC+AGG + chr7_4:29288476-29288495 None:intergenic 20.0%
!! TACAAAATATTGTGAAATAG+CGG - chr7_4:29288490-29288509 Msa1148780:CDS 20.0%
!! TTGGAAATGAATAATGAAAA+AGG + chr7_4:29289826-29289845 None:intergenic 20.0%
!! TACATGTATCAATAAATGTT+TGG - chr7_4:29290102-29290121 Msa1148780:intron 20.0%
!!! AAATCAGAGTATTATGAAAA+TGG + chr7_4:29290288-29290307 None:intergenic 20.0%
!! CTCATATTACTTATCATTTA+AGG - chr7_4:29290670-29290689 Msa1148780:intron 20.0%
!!! TTTTCTCTGTAAAATCTTAA+GGG - chr7_4:29290960-29290979 Msa1148780:intron 20.0%
!!! CTAAAGTCTTCTTTTTATTT+TGG + chr7_4:29291772-29291791 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTGAGGG+AGG - chr7_4:29291852-29291871 Msa1148780:intron 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+GGG - chr7_4:29291853-29291872 Msa1148780:intron 20.0%
!! TTAATAATATCTGTCTACAT+TGG - chr7_4:29291990-29292009 Msa1148780:CDS 20.0%
!! TAGGCTAAAAACAAATAAAT+GGG + chr7_4:29292025-29292044 None:intergenic 20.0%
!! ATAGGCTAAAAACAAATAAA+TGG + chr7_4:29292026-29292045 None:intergenic 20.0%
!! ATCAAAAGAAAAATATGAGA+TGG + chr7_4:29292064-29292083 None:intergenic 20.0%
!!! TCAATATAGTCTTTTGATTT+AGG - chr7_4:29292109-29292128 Msa1148780:intron 20.0%
!!! ATTATGTTGTTTACACATAT+TGG - chr7_4:29292393-29292412 Msa1148780:intron 20.0%
!!! TGTCAAAATTATTTTATCCT+TGG + chr7_4:29292730-29292749 None:intergenic 20.0%
!! TAATGGCTGTAATAAAATAT+TGG - chr7_4:29293039-29293058 Msa1148780:intron 20.0%
!!! CAATTGAGATTTAGAATAAT+TGG - chr7_4:29293089-29293108 Msa1148780:intron 20.0%
!!! TGTTTACATTTTGCTTTTAT+AGG - chr7_4:29293115-29293134 Msa1148780:intron 20.0%
!!! TTTTGCTTTTATAGGTTAAT+TGG - chr7_4:29293123-29293142 Msa1148780:intron 20.0%
!!! AGAATTTTGGAACAAATATT+TGG - chr7_4:29293167-29293186 Msa1148780:intron 20.0%
!! AATTCGTAAAATCTATTGAA+AGG + chr7_4:29293323-29293342 None:intergenic 20.0%
!!! CATTTTTTGTTTTGTTCATT+TGG - chr7_4:29294919-29294938 Msa1148780:intron 20.0%
!! TTACTAATATTCGATAAGTT+AGG - chr7_4:29295021-29295040 Msa1148780:intron 20.0%
!!! AACTAACTTTTAATTGAAGT+CGG - chr7_4:29295427-29295446 Msa1148780:intron 20.0%
!!! AACTTATTTTGCATTTCAAA+TGG - chr7_4:29295629-29295648 Msa1148780:intron 20.0%
!! TAAAATTGTGACATAAATGA+GGG + chr7_4:29296034-29296053 None:intergenic 20.0%
! ATAAATGCGGAAAAATGAAA+CGG + chr7_4:29287240-29287259 None:intergenic 25.0%
! AATAATGATGCTAAAAACCT+TGG + chr7_4:29287460-29287479 None:intergenic 25.0%
! ATTCAACACTGTATATATCA+TGG - chr7_4:29288129-29288148 Msa1148780:intron 25.0%
!! AACTGTTTATTGCTATTACT+GGG - chr7_4:29288590-29288609 Msa1148780:CDS 25.0%
! AACTATGTATTGAGAAAACA+GGG + chr7_4:29288657-29288676 None:intergenic 25.0%
! AAACTATGTATTGAGAAAAC+AGG + chr7_4:29288658-29288677 None:intergenic 25.0%
!!! TCTCAATACATAGTTTTGAT+AGG - chr7_4:29288662-29288681 Msa1148780:CDS 25.0%
! AAGTATATTGCTCACTTATA+TGG - chr7_4:29289010-29289029 Msa1148780:intron 25.0%
! GTCAAATTATGTATTACATG+TGG - chr7_4:29289255-29289274 Msa1148780:intron 25.0%
!!! AATTTTGACAAGTTGTAACT+TGG - chr7_4:29289499-29289518 Msa1148780:intron 25.0%
! TAAATGTTTCAAATGACTTC+TGG - chr7_4:29289529-29289548 Msa1148780:intron 25.0%
! TAATGAAAAAGGCAATGAAA+TGG + chr7_4:29289815-29289834 None:intergenic 25.0%
!!! ATGGCATACATTTTTTAGTT+TGG + chr7_4:29289845-29289864 None:intergenic 25.0%
!!! ATGTACTTTCTAAAATTACC+TGG + chr7_4:29290087-29290106 None:intergenic 25.0%
! TTTGAGTAAATTACTGATCT+AGG - chr7_4:29290151-29290170 Msa1148780:intron 25.0%
! ACAATAAATTTCTAAGTTCC+AGG - chr7_4:29290190-29290209 Msa1148780:intron 25.0%
! CAATAAATTTCTAAGTTCCA+GGG - chr7_4:29290191-29290210 Msa1148780:intron 25.0%
! TTTCATAATACTCTGATTTC+AGG - chr7_4:29290289-29290308 Msa1148780:intron 25.0%
!! TCATGGAATTTTACTAGAAA+TGG - chr7_4:29290418-29290437 Msa1148780:intron 25.0%
!! CATGGAATTTTACTAGAAAT+GGG - chr7_4:29290419-29290438 Msa1148780:intron 25.0%
! TGATAAGTAATATGAGACAA+GGG + chr7_4:29290666-29290685 None:intergenic 25.0%
! ATGATAAGTAATATGAGACA+AGG + chr7_4:29290667-29290686 None:intergenic 25.0%
! TATTGTAGTTGTTAGATACT+TGG - chr7_4:29290767-29290786 Msa1148780:intron 25.0%
!!! AGGATTAATTATAGTCTTGT+AGG - chr7_4:29290800-29290819 Msa1148780:intron 25.0%
!!! ATTAATTATAGTCTTGTAGG+TGG - chr7_4:29290803-29290822 Msa1148780:intron 25.0%
!! CTTTTCTCTGTAAAATCTTA+AGG - chr7_4:29290959-29290978 Msa1148780:intron 25.0%
! ATGATACTTGAAAAAGTGAA+AGG - chr7_4:29291300-29291319 Msa1148780:intron 25.0%
! TGATACTTGAAAAAGTGAAA+GGG - chr7_4:29291301-29291320 Msa1148780:intron 25.0%
! TTATTGTACAGAACATTACA+AGG - chr7_4:29291331-29291350 Msa1148780:intron 25.0%
! ATCTGTATTCAGAATTACTT+TGG - chr7_4:29291367-29291386 Msa1148780:intron 25.0%
!! TTACTTTGGTATCTTACTTT+TGG - chr7_4:29291381-29291400 Msa1148780:intron 25.0%
! CATAACAACGTTACATTAAA+TGG + chr7_4:29291462-29291481 None:intergenic 25.0%
!! AAATTTTACGCATCTTTTCT+CGG - chr7_4:29291576-29291595 Msa1148780:intron 25.0%
! ATGTTTCCAACAAGAAAAAA+TGG + chr7_4:29291747-29291766 None:intergenic 25.0%
!! CAAAACATATTTTCAGTACA+AGG + chr7_4:29291803-29291822 None:intergenic 25.0%
!! GTACTGAAAATATGTTTTGT+TGG - chr7_4:29291804-29291823 Msa1148780:intron 25.0%
!!! CTTTTTAGTGAACATTTCTA+TGG - chr7_4:29292459-29292478 Msa1148780:intron 25.0%
!!! CCTTTTATTGGCTTAAATAA+TGG + chr7_4:29292568-29292587 None:intergenic 25.0%
! CCATTATTTAAGCCAATAAA+AGG - chr7_4:29292565-29292584 Msa1148780:intron 25.0%
! TTGAAATACAAGATAATCGT+TGG + chr7_4:29292902-29292921 None:intergenic 25.0%
! GGAATAAGAGATAAATGTAT+TGG + chr7_4:29292957-29292976 None:intergenic 25.0%
!!! ATGCTACTTGTATTGATTTA+GGG - chr7_4:29293004-29293023 Msa1148780:intron 25.0%
! TATTACAGCCATTAATTAGT+TGG + chr7_4:29293033-29293052 None:intergenic 25.0%
! TCTCAAAAAACATGAAACTA+TGG + chr7_4:29293350-29293369 None:intergenic 25.0%
! CTGACTCTAATTCAAATATA+TGG + chr7_4:29293427-29293446 None:intergenic 25.0%
! TTATTCATTCTTCTGTTGAA+TGG + chr7_4:29293454-29293473 None:intergenic 25.0%
! AGAAGAATGAATAAGATCAA+AGG - chr7_4:29293460-29293479 Msa1148780:intron 25.0%
! GAAGAATGAATAAGATCAAA+GGG - chr7_4:29293461-29293480 Msa1148780:intron 25.0%
! TCAATACCTTTATCTTTACT+GGG - chr7_4:29293485-29293504 Msa1148780:intron 25.0%
!!! TTTTTTCCCAGTAAAGATAA+AGG + chr7_4:29293494-29293513 None:intergenic 25.0%
!! AAGTGTTCATTTCTTGTTAT+TGG + chr7_4:29293690-29293709 None:intergenic 25.0%
!!! CAAGAAATGAACACTTTTTT+TGG - chr7_4:29293694-29293713 Msa1148780:intron 25.0%
! TGAAAATTCACAATCTTTCT+TGG - chr7_4:29293887-29293906 Msa1148780:intron 25.0%
! TATATCTCCTTTATTGTAAC+TGG + chr7_4:29294367-29294386 None:intergenic 25.0%
!!! AGGTAAATTGAGAGTATTTT+GGG - chr7_4:29294429-29294448 Msa1148780:CDS 25.0%
! TAATTATGCCTAAATAGACA+GGG + chr7_4:29294886-29294905 None:intergenic 25.0%
! TTAATTATGCCTAAATAGAC+AGG + chr7_4:29294887-29294906 None:intergenic 25.0%
! TATTTAGGCATAATTAAGTC+TGG - chr7_4:29294890-29294909 Msa1148780:intron 25.0%
! TGAACAAAACAAAAAATGCA+GGG + chr7_4:29294917-29294936 None:intergenic 25.0%
! ATGAACAAAACAAAAAATGC+AGG + chr7_4:29294918-29294937 None:intergenic 25.0%
! ATATTCGATAAGTTAGGTTT+AGG - chr7_4:29295027-29295046 Msa1148780:intron 25.0%
! TTATAGCATGCTTGAAAAAA+TGG - chr7_4:29295214-29295233 Msa1148780:intron 25.0%
! TATAGCATGCTTGAAAAAAT+GGG - chr7_4:29295215-29295234 Msa1148780:intron 25.0%
!!! TTGCTTTTGAGAGTAAATAA+AGG + chr7_4:29295312-29295331 None:intergenic 25.0%
! TCTCAAAAGCAAATTTGATT+AGG - chr7_4:29295320-29295339 Msa1148780:intron 25.0%
!! ATTTTGAATTACCTTGATCT+TGG + chr7_4:29295457-29295476 None:intergenic 25.0%
! TTAATTGCAGGGTAAATTAA+GGG - chr7_4:29295529-29295548 Msa1148780:intron 25.0%
!!! GGTCTAATATTTTAAAAGCA+GGG - chr7_4:29295550-29295569 Msa1148780:intron 25.0%
! ATGATATACAATACAATGTG+TGG - chr7_4:29295599-29295618 Msa1148780:intron 25.0%
! TTAATGACTGTTCTAACAAT+CGG + chr7_4:29295876-29295895 None:intergenic 25.0%
! AAAATTGTGACATAAATGAG+GGG + chr7_4:29296033-29296052 None:intergenic 25.0%
! CTAAAATTGTGACATAAATG+AGG + chr7_4:29296035-29296054 None:intergenic 25.0%
! ACTAAATTCGAAGCTAAAAT+TGG + chr7_4:29296163-29296182 None:intergenic 25.0%
! GAATTTAGTATTACTGGATT+TGG - chr7_4:29296174-29296193 Msa1148780:five_prime_UTR 25.0%
GGAAAAAGGATGAGAAATTA+GGG + chr7_4:29287207-29287226 None:intergenic 30.0%
AAAATGAAACGGTGATTTGA+GGG + chr7_4:29287229-29287248 None:intergenic 30.0%
AAAAATGAAACGGTGATTTG+AGG + chr7_4:29287230-29287249 None:intergenic 30.0%
TAATTTCTGAATTGTGTTGC+AGG - chr7_4:29287290-29287309 Msa1148780:three_prime_UTR 30.0%
!! AGTTGCACAAGTTTTATCAA+TGG - chr7_4:29287330-29287349 Msa1148780:exon 30.0%
TTGAAATTCGTAGTCTGATT+CGG + chr7_4:29287430-29287449 None:intergenic 30.0%
TTTAGCAATATTGTCAACTG+CGG - chr7_4:29287832-29287851 Msa1148780:intron 30.0%
!!! TTATTTTTTTTGGTAGTGGC+CGG - chr7_4:29287954-29287973 Msa1148780:intron 30.0%
AGAGAAAAAAAGATTGAGAG+TGG - chr7_4:29288193-29288212 Msa1148780:intron 30.0%
GAAGATGCAAATTGTTTAAC+TGG - chr7_4:29288215-29288234 Msa1148780:intron 30.0%
ACAACACAAACATGAAATCT+TGG + chr7_4:29288388-29288407 None:intergenic 30.0%
TTGTTAAATAGCTGTCATAG+CGG - chr7_4:29288404-29288423 Msa1148780:intron 30.0%
!! TTGTGAAATAGCGGATATAA+CGG - chr7_4:29288499-29288518 Msa1148780:CDS 30.0%
ATTATAACACAGTTGCATAG+TGG - chr7_4:29288523-29288542 Msa1148780:CDS 30.0%
! GAACTGTTTATTGCTATTAC+TGG - chr7_4:29288589-29288608 Msa1148780:CDS 30.0%
!! GTTTTGATAGGTAGTAAGTA+TGG - chr7_4:29288674-29288693 Msa1148780:CDS 30.0%
!!! GCTTGAATTTTTTCTGTGTA+AGG + chr7_4:29288842-29288861 None:intergenic 30.0%
TAAAAATTACTCACCGTCTT+CGG - chr7_4:29288886-29288905 Msa1148780:intron 30.0%
AAAAGAACCTGATTAACAAC+TGG + chr7_4:29288984-29289003 None:intergenic 30.0%
! TGTTAATCAGGTTCTTTTGA+TGG - chr7_4:29288986-29289005 Msa1148780:intron 30.0%
! GTTAATCAGGTTCTTTTGAT+GGG - chr7_4:29288987-29289006 Msa1148780:intron 30.0%
! AGAATTGTTCTTTTGATCAC+GGG + chr7_4:29289066-29289085 None:intergenic 30.0%
! CAGAATTGTTCTTTTGATCA+CGG + chr7_4:29289067-29289086 None:intergenic 30.0%
GTAAGAAAGTCAAGATATCA+TGG - chr7_4:29289133-29289152 Msa1148780:intron 30.0%
TCTAAATGCATTAGAGAAAG+AGG - chr7_4:29289300-29289319 Msa1148780:intron 30.0%
! TCCAAAGTTAAGGTTACTTT+GGG - chr7_4:29289390-29289409 Msa1148780:intron 30.0%
! CTGCACATGTTATGTTATTT+CGG - chr7_4:29289476-29289495 Msa1148780:intron 30.0%
!! TCTTCCTTCTAGAATATCAA+TGG - chr7_4:29289714-29289733 Msa1148780:intron 30.0%
TGATCCATTGATATTCTAGA+AGG + chr7_4:29289721-29289740 None:intergenic 30.0%
TTACACCAACTTAATCACAT+TGG + chr7_4:29289870-29289889 None:intergenic 30.0%
ACTTCAGAAAAAACTTTGAC+TGG + chr7_4:29289989-29290008 None:intergenic 30.0%
! AAGGAGTTTTTCCTTGTAAA+AGG - chr7_4:29290052-29290071 Msa1148780:intron 30.0%
ACCTAATGATACTAGAAGAA+AGG + chr7_4:29290128-29290147 None:intergenic 30.0%
AGTAAATTACTGATCTAGGT+TGG - chr7_4:29290155-29290174 Msa1148780:intron 30.0%
!! ATGTATCAAGTTAGCTTGTT+TGG - chr7_4:29290333-29290352 Msa1148780:intron 30.0%
!! TGTATCAAGTTAGCTTGTTT+GGG - chr7_4:29290334-29290353 Msa1148780:intron 30.0%
TAGAAGGTCAAACTCATTAT+AGG - chr7_4:29290477-29290496 Msa1148780:intron 30.0%
! ACATTGATTGCAAAATCTAC+TGG - chr7_4:29290557-29290576 Msa1148780:intron 30.0%
GATAAGTAATATGAGACAAG+GGG + chr7_4:29290665-29290684 None:intergenic 30.0%
GGTGGAGATATCAATAAATA+AGG - chr7_4:29290821-29290840 Msa1148780:intron 30.0%
TTGCCTCTGTAAAATCTTAA+GGG - chr7_4:29290998-29291017 Msa1148780:CDS 30.0%
TTTAGGCAACTTTGCTTATT+TGG + chr7_4:29291051-29291070 None:intergenic 30.0%
ATAAGCAAAGTTGCCTAAAT+AGG - chr7_4:29291052-29291071 Msa1148780:CDS 30.0%
!!! AGCAAAACTGTGTTTTTTCA+TGG - chr7_4:29291116-29291135 Msa1148780:CDS 30.0%
AGTTCTTTGACATTGTTCTT+AGG - chr7_4:29291266-29291285 Msa1148780:intron 30.0%
GATACTTGAAAAAGTGAAAG+GGG - chr7_4:29291302-29291321 Msa1148780:intron 30.0%
!! TTGGTATCTTACTTTTGGTT+TGG - chr7_4:29291386-29291405 Msa1148780:intron 30.0%
! AATTTTACGCATCTTTTCTC+GGG - chr7_4:29291577-29291596 Msa1148780:intron 30.0%
!! GTTTTGTTGGCCAAAAAATA+AGG - chr7_4:29291817-29291836 Msa1148780:intron 30.0%
!!! TAGCACTCTTCCTTATTTTT+TGG + chr7_4:29291830-29291849 None:intergenic 30.0%
!!! TGGCATTTTGACTCAATAAT+AGG + chr7_4:29292044-29292063 None:intergenic 30.0%
!! CAGTCATCATTATTTTGTCA+GGG - chr7_4:29292140-29292159 Msa1148780:intron 30.0%
!! TTCTAAAATGGAAACACCAT+GGG + chr7_4:29292199-29292218 None:intergenic 30.0%
AGAAGATTTAGTTATAGCTC+TGG - chr7_4:29292215-29292234 Msa1148780:intron 30.0%
GTCAAGTAAAACAAATAGCT+TGG - chr7_4:29292290-29292309 Msa1148780:intron 30.0%
AAGTAAAACAAATAGCTTGG+AGG - chr7_4:29292293-29292312 Msa1148780:intron 30.0%
ACTCCAAAAATTACGTAATG+AGG - chr7_4:29292344-29292363 Msa1148780:intron 30.0%
! GTACCTCATTACGTAATTTT+TGG + chr7_4:29292350-29292369 None:intergenic 30.0%
AGGTACAAATTTCATGCATA+TGG - chr7_4:29292364-29292383 Msa1148780:intron 30.0%
TTTAGTGAACATTTCTATGG+CGG - chr7_4:29292462-29292481 Msa1148780:intron 30.0%
AGCATTTATGTTTGCAAATG+AGG - chr7_4:29292749-29292768 Msa1148780:intron 30.0%
TGGGTATATTTCTTTGCAAT+TGG - chr7_4:29292812-29292831 Msa1148780:intron 30.0%
TGGTACCTGAATCAATTATA+AGG + chr7_4:29292843-29292862 None:intergenic 30.0%
!! AGAGTGAAATATCGATTTGA+TGG + chr7_4:29292863-29292882 None:intergenic 30.0%
ATTGGAAAGAAATAAGACCT+GGG + chr7_4:29292939-29292958 None:intergenic 30.0%
TATTGGAAAGAAATAAGACC+TGG + chr7_4:29292940-29292959 None:intergenic 30.0%
ATCAATACAAGTAGCATCAA+TGG + chr7_4:29293001-29293020 None:intergenic 30.0%
!! GATGCTACTTGTATTGATTT+AGG - chr7_4:29293003-29293022 Msa1148780:intron 30.0%
TAGGGATTCCAACTAATTAA+TGG - chr7_4:29293022-29293041 Msa1148780:intron 30.0%
!! AATAAAATATTGGTGCCACA+TGG - chr7_4:29293049-29293068 Msa1148780:intron 30.0%
! TGCTTTTATAGGTTAATTGG+TGG - chr7_4:29293126-29293145 Msa1148780:intron 30.0%
! GCTTTTATAGGTTAATTGGT+GGG - chr7_4:29293127-29293146 Msa1148780:intron 30.0%
! AGGAAATAGGATCAGAATTT+TGG - chr7_4:29293154-29293173 Msa1148780:intron 30.0%
TTAATTCCCCACAACAAAAT+GGG + chr7_4:29293212-29293231 None:intergenic 30.0%
! ACCATTTTCTTCGAGATATT+GGG - chr7_4:29293254-29293273 Msa1148780:intron 30.0%
GAAAGGCTATGTTCTAATAA+AGG + chr7_4:29293306-29293325 None:intergenic 30.0%
! TTCAAATATATGGTGCTAAG+TGG + chr7_4:29293417-29293436 None:intergenic 30.0%
CTCAATACCTTTATCTTTAC+TGG - chr7_4:29293484-29293503 Msa1148780:intron 30.0%
TTACTGGGAAAAAAAGATAC+AGG - chr7_4:29293500-29293519 Msa1148780:intron 30.0%
! CATTCTTTTGTGAACAAATG+AGG - chr7_4:29293569-29293588 Msa1148780:intron 30.0%
! GTTTAGAGTCTATTCCTTAA+TGG + chr7_4:29293663-29293682 None:intergenic 30.0%
AAATTCACAATCTTTCTTGG+AGG - chr7_4:29293890-29293909 Msa1148780:intron 30.0%
AATTCACAATCTTTCTTGGA+GGG - chr7_4:29293891-29293910 Msa1148780:intron 30.0%
TCAGTTTCCAGTTACAATAA+AGG - chr7_4:29294357-29294376 Msa1148780:CDS 30.0%
ACAGAATTTAAAGACAACGT+TGG + chr7_4:29294406-29294425 None:intergenic 30.0%
TTGTCTTTAAATTCTGTGTC+AGG - chr7_4:29294409-29294428 Msa1148780:CDS 30.0%
!!! CAGGTAAATTGAGAGTATTT+TGG - chr7_4:29294428-29294447 Msa1148780:CDS 30.0%
TTTCATCATACTTTCGTTTC+AGG - chr7_4:29294591-29294610 Msa1148780:intron 30.0%
ATTTCTCAATGCCCATAAAA+CGG - chr7_4:29294815-29294834 Msa1148780:intron 30.0%
! AATTCCTTTGTCCGTTTTAT+GGG + chr7_4:29294829-29294848 None:intergenic 30.0%
! TAATTCCTTTGTCCGTTTTA+TGG + chr7_4:29294830-29294849 None:intergenic 30.0%
TAAAACGGACAAAGGAATTA+AGG - chr7_4:29294830-29294849 Msa1148780:intron 30.0%
AAAACGGACAAAGGAATTAA+GGG - chr7_4:29294831-29294850 Msa1148780:intron 30.0%
TAGAAGATTGCATTAAGAAC+AGG + chr7_4:29294989-29295008 None:intergenic 30.0%
ATAGCATGCTTGAAAAAATG+GGG - chr7_4:29295216-29295235 Msa1148780:intron 30.0%
GTTAATTGCAGGGTAAATTA+AGG - chr7_4:29295528-29295547 Msa1148780:intron 30.0%
!! GGGTCTAATATTTTAAAAGC+AGG - chr7_4:29295549-29295568 Msa1148780:intron 30.0%
!! ATATTTTAAAAGCAGGGAGT+AGG - chr7_4:29295556-29295575 Msa1148780:intron 30.0%
!! TATTTTAAAAGCAGGGAGTA+GGG - chr7_4:29295557-29295576 Msa1148780:intron 30.0%
TATACAATACAATGTGTGGT+TGG - chr7_4:29295603-29295622 Msa1148780:intron 30.0%
ACAGCAATTAGATATATCGA+GGG + chr7_4:29295789-29295808 None:intergenic 30.0%
AACAGCAATTAGATATATCG+AGG + chr7_4:29295790-29295809 None:intergenic 30.0%
!!! TTCTTTTTGGTTAGCTTGAT+TGG - chr7_4:29295918-29295937 Msa1148780:CDS 30.0%
!! TCTTTAGGACTCATTTATAC+AGG - chr7_4:29295945-29295964 Msa1148780:CDS 30.0%
AAATTGTGACATAAATGAGG+GGG + chr7_4:29296032-29296051 None:intergenic 30.0%
ATTCGAAATAGCATTGCTTT+CGG - chr7_4:29296070-29296089 Msa1148780:intron 30.0%
!! AAATTGGCTTGATCTCAATA+TGG + chr7_4:29296147-29296166 None:intergenic 30.0%
AGCTTCGAATTTAGTATTAC+TGG - chr7_4:29296168-29296187 Msa1148780:five_prime_UTR 30.0%
! TAAGTCTTAACGGGTCAATT+TGG + chr7_4:29287052-29287071 None:intergenic 35.0%
AAATTGACCCGTTAAGACTT+AGG - chr7_4:29287051-29287070 Msa1148780:three_prime_UTR 35.0%
TCCACTTTCCTAAGTCTTAA+CGG + chr7_4:29287062-29287081 None:intergenic 35.0%
GGGAAAAAGGATGAGAAATT+AGG + chr7_4:29287208-29287227 None:intergenic 35.0%
AAATGAAACGGTGATTTGAG+GGG + chr7_4:29287228-29287247 None:intergenic 35.0%
!! TGCACAAGTTTTATCAATGG+CGG - chr7_4:29287333-29287352 Msa1148780:exon 35.0%
TATGCAGCTTAGCACAAAAT+GGG + chr7_4:29287372-29287391 None:intergenic 35.0%
ATATGCAGCTTAGCACAAAA+TGG + chr7_4:29287373-29287392 None:intergenic 35.0%
TGAAATTCGTAGTCTGATTC+GGG + chr7_4:29287429-29287448 None:intergenic 35.0%
!!! TATTTTTTTTGGTAGTGGCC+GGG - chr7_4:29287955-29287974 Msa1148780:intron 35.0%
GACAATGCATACTATATGCA+AGG + chr7_4:29287995-29288014 None:intergenic 35.0%
! GTTCTTAACTTGGTAAGTCT+TGG - chr7_4:29288266-29288285 Msa1148780:intron 35.0%
TCTTGGCTATTTAAAAGCGA+AGG - chr7_4:29288283-29288302 Msa1148780:intron 35.0%
TAAAAGCGAAGGCTGAAAAT+TGG - chr7_4:29288294-29288313 Msa1148780:intron 35.0%
GCTATAGCACTATTGCATAA+TGG - chr7_4:29288428-29288447 Msa1148780:intron 35.0%
ATATTATCACAGGACAGTAG+AGG + chr7_4:29288466-29288485 None:intergenic 35.0%
! AAACAGTTCGTTGTTGATTG+TGG + chr7_4:29288578-29288597 None:intergenic 35.0%
AGCAAAAGGAAAATATCGGA+AGG + chr7_4:29288779-29288798 None:intergenic 35.0%
CTGCAGCAAAAGGAAAATAT+CGG + chr7_4:29288783-29288802 None:intergenic 35.0%
GAAATACTTTCTGCAGCAAA+AGG + chr7_4:29288793-29288812 None:intergenic 35.0%
AAATTCAAGCCGAGTGTATT+TGG - chr7_4:29288852-29288871 Msa1148780:intron 35.0%
AATTCAAGCCGAGTGTATTT+GGG - chr7_4:29288853-29288872 Msa1148780:intron 35.0%
AAAAATTACTCACCGTCTTC+GGG - chr7_4:29288887-29288906 Msa1148780:intron 35.0%
CTATGCCAATGCAGTTTAAA+GGG + chr7_4:29288917-29288936 None:intergenic 35.0%
ATATTGCTCACTTATATGGC+TGG - chr7_4:29289014-29289033 Msa1148780:intron 35.0%
ATTAGAGAAAGAGGCTTATG+CGG - chr7_4:29289309-29289328 Msa1148780:intron 35.0%
! GCAACAGCTTTTAAACTCAA+GGG + chr7_4:29289364-29289383 None:intergenic 35.0%
! AGCAACAGCTTTTAAACTCA+AGG + chr7_4:29289365-29289384 None:intergenic 35.0%
AGTTTAAAAGCTGTTGCTGA+GGG - chr7_4:29289367-29289386 Msa1148780:intron 35.0%
GTCCAAAGTTAAGGTTACTT+TGG - chr7_4:29289389-29289408 Msa1148780:intron 35.0%
AAGATTGTGATAGTCTGAAG+TGG - chr7_4:29289591-29289610 Msa1148780:intron 35.0%
! AGATTGTGATAGTCTGAAGT+GGG - chr7_4:29289592-29289611 Msa1148780:intron 35.0%
AATGCAGTAAATGAGTGTCT+GGG + chr7_4:29289690-29289709 None:intergenic 35.0%
TAATGCAGTAAATGAGTGTC+TGG + chr7_4:29289691-29289710 None:intergenic 35.0%
CAACTTAATCACATTGGCAA+TGG + chr7_4:29289864-29289883 None:intergenic 35.0%
CATTGCCAATGTGATTAAGT+TGG - chr7_4:29289862-29289881 Msa1148780:intron 35.0%
GCCTTTCTTCTAGTATCATT+AGG - chr7_4:29290124-29290143 Msa1148780:intron 35.0%
AGCTAACTTGATACATCTCA+TGG + chr7_4:29290329-29290348 None:intergenic 35.0%
TAATGAGTTTGACCTTCTAC+TGG + chr7_4:29290476-29290495 None:intergenic 35.0%
TAATATGAGACAAGGGGATA+GGG + chr7_4:29290659-29290678 None:intergenic 35.0%
AGATACTTGGATTGATACGA+AGG - chr7_4:29290780-29290799 Msa1148780:intron 35.0%
GTTGCCTCTGTAAAATCTTA+AGG - chr7_4:29290997-29291016 Msa1148780:CDS 35.0%
TGCCTCTGTAAAATCTTAAG+GGG - chr7_4:29290999-29291018 Msa1148780:CDS 35.0%
!!! ATCTTACTTTTGGTTTGGTC+AGG - chr7_4:29291391-29291410 Msa1148780:intron 35.0%
!! TCGTTTTGTTGAGTTACTAG+TGG - chr7_4:29291647-29291666 Msa1148780:intron 35.0%
!! CGTTTTGTTGAGTTACTAGT+GGG - chr7_4:29291648-29291667 Msa1148780:intron 35.0%
! AAACCATTCCTTTTGTCATG+AGG - chr7_4:29291703-29291722 Msa1148780:intron 35.0%
! AACCATTCCTTTTGTCATGA+GGG - chr7_4:29291704-29291723 Msa1148780:intron 35.0%
!! GAAGAGTGCTATTTATTAGC+AGG - chr7_4:29291875-29291894 Msa1148780:intron 35.0%
! TCCATAGTTTCTGAAAGCAT+AGG - chr7_4:29291919-29291938 Msa1148780:intron 35.0%
ACCTATGCTTTCAGAAACTA+TGG + chr7_4:29291923-29291942 None:intergenic 35.0%
TTACAAAGGCAAACATGTCT+TGG - chr7_4:29291966-29291985 Msa1148780:CDS 35.0%
CCTGACAAAATAATGATGAC+TGG + chr7_4:29292142-29292161 None:intergenic 35.0%
!! CCAGTCATCATTATTTTGTC+AGG - chr7_4:29292139-29292158 Msa1148780:intron 35.0%
!! CTTCTAAAATGGAAACACCA+TGG + chr7_4:29292200-29292219 None:intergenic 35.0%
CAGAAATAAACTCCAGATAG+AGG + chr7_4:29292257-29292276 None:intergenic 35.0%
!!! TAATTTTTGGAGTTCTCTGG+TGG + chr7_4:29292337-29292356 None:intergenic 35.0%
!!! ACGTAATTTTTGGAGTTCTC+TGG + chr7_4:29292340-29292359 None:intergenic 35.0%
AACACATATGTCTGATTGTC+TGG - chr7_4:29292792-29292811 Msa1148780:intron 35.0%
ACACATATGTCTGATTGTCT+GGG - chr7_4:29292793-29292812 Msa1148780:intron 35.0%
CCTGAATCAATTATAAGGCA+AGG + chr7_4:29292838-29292857 None:intergenic 35.0%
! CCTTGCCTTATAATTGATTC+AGG - chr7_4:29292835-29292854 Msa1148780:intron 35.0%
AGCATCAATGGACGAAAATT+GGG + chr7_4:29292989-29293008 None:intergenic 35.0%
TAGCATCAATGGACGAAAAT+TGG + chr7_4:29292990-29293009 None:intergenic 35.0%
TAATTCCCCACAACAAAATG+GGG + chr7_4:29293211-29293230 None:intergenic 35.0%
GTTAATTCCCCACAACAAAA+TGG + chr7_4:29293213-29293232 None:intergenic 35.0%
! CACCATTTTCTTCGAGATAT+TGG - chr7_4:29293253-29293272 Msa1148780:intron 35.0%
TCCCAATATCTCGAAGAAAA+TGG + chr7_4:29293258-29293277 None:intergenic 35.0%
TTCATTCTTCTGTTGAATGG+AGG + chr7_4:29293451-29293470 None:intergenic 35.0%
TGGGAAAAAAAGATACAGGA+CGG - chr7_4:29293504-29293523 Msa1148780:intron 35.0%
GTGAACAAATGAGGAAACAA+AGG - chr7_4:29293578-29293597 Msa1148780:intron 35.0%
! AATCTCATTGTGTTGTTGCA+TGG + chr7_4:29293824-29293843 None:intergenic 35.0%
ATGCAACAACACAATGAGAT+TGG - chr7_4:29293823-29293842 Msa1148780:intron 35.0%
TGCAACAACACAATGAGATT+GGG - chr7_4:29293824-29293843 Msa1148780:intron 35.0%
GGAATAGAAACTTTGTCTTG+AGG - chr7_4:29293920-29293939 Msa1148780:CDS 35.0%
AAACTTTGTCTTGAGGAGTT+AGG - chr7_4:29293927-29293946 Msa1148780:CDS 35.0%
AACTTTGTCTTGAGGAGTTA+GGG - chr7_4:29293928-29293947 Msa1148780:CDS 35.0%
TTAGCAATGCAGAACATTGT+GGG + chr7_4:29294090-29294109 None:intergenic 35.0%
ACAATGTTCTGCATTGCTAA+GGG - chr7_4:29294090-29294109 Msa1148780:CDS 35.0%
TGCAATGAAGGAAGTGAAAA+AGG - chr7_4:29294134-29294153 Msa1148780:intron 35.0%
GCAATGAAGGAAGTGAAAAA+GGG - chr7_4:29294135-29294154 Msa1148780:intron 35.0%
TTGTGGAGAAAGAAACTTAG+CGG + chr7_4:29294182-29294201 None:intergenic 35.0%
AGTTTCTTTCTCCACAACAA+AGG - chr7_4:29294185-29294204 Msa1148780:intron 35.0%
TTCTCCACAACAAAGGTAAT+TGG - chr7_4:29294192-29294211 Msa1148780:intron 35.0%
TCTCCACAACAAAGGTAATT+GGG - chr7_4:29294193-29294212 Msa1148780:intron 35.0%
! ATGAAAGTGGCAAGTGTTTT+TGG - chr7_4:29294227-29294246 Msa1148780:CDS 35.0%
! TCACTAGCCTATAAGAAAGT+TGG + chr7_4:29294291-29294310 None:intergenic 35.0%
ACTTTCTTATAGGCTAGTGA+AGG - chr7_4:29294291-29294310 Msa1148780:CDS 35.0%
!!! GAGTATTTTGGGTTCTGTTT+TGG - chr7_4:29294440-29294459 Msa1148780:CDS 35.0%
! CGAAAGTATGATGAAAGTCT+CGG + chr7_4:29294587-29294606 None:intergenic 35.0%
ACAATATAACTCACGTGACA+TGG + chr7_4:29294782-29294801 None:intergenic 35.0%
!!! GTTTTATGGGCATTGAGAAA+TGG + chr7_4:29294816-29294835 None:intergenic 35.0%
GAAAACATACCATCCTGTAA+GGG + chr7_4:29294857-29294876 None:intergenic 35.0%
AGAAAACATACCATCCTGTA+AGG + chr7_4:29294858-29294877 None:intergenic 35.0%
AAGAACAGGATGGAAAAGTA+AGG + chr7_4:29294975-29294994 None:intergenic 35.0%
AGATTGCATTAAGAACAGGA+TGG + chr7_4:29294985-29295004 None:intergenic 35.0%
AGGCAGTTTAACATGTCTTT+GGG + chr7_4:29295495-29295514 None:intergenic 35.0%
AATTAACTACCATCCAACTC+AGG + chr7_4:29295515-29295534 None:intergenic 35.0%
TTGGATGGTAGTTAATTGCA+GGG - chr7_4:29295518-29295537 Msa1148780:intron 35.0%
! TCAAATGGCGTACATTTTAG+TGG - chr7_4:29295644-29295663 Msa1148780:intron 35.0%
!! CCTTTAAAGTGAGCAAGTAA+AGG + chr7_4:29295742-29295761 None:intergenic 35.0%
CCTTTACTTGCTCACTTTAA+AGG - chr7_4:29295739-29295758 Msa1148780:intron 35.0%
! TGAAGCTATCTCGTTCTTTT+TGG - chr7_4:29295905-29295924 Msa1148780:CDS 35.0%
!!! TTTTGGTTAGCTTGATTGGA+AGG - chr7_4:29295922-29295941 Msa1148780:CDS 35.0%
GACTCATTTATACAGGCATT+AGG - chr7_4:29295952-29295971 Msa1148780:CDS 35.0%
AATTGTGACATAAATGAGGG+GGG + chr7_4:29296031-29296050 None:intergenic 35.0%
CCACTTTCCTAAGTCTTAAC+GGG + chr7_4:29287061-29287080 None:intergenic 40.0%
!! GGATTTTGAAGAAACGAAGC+AGG - chr7_4:29287079-29287098 Msa1148780:three_prime_UTR 40.0%
GAATGAGATGAGGATTGGAT+TGG + chr7_4:29287116-29287135 None:intergenic 40.0%
GATGAGAATGAGATGAGGAT+TGG + chr7_4:29287121-29287140 None:intergenic 40.0%
GATGTGATGAGAATGAGATG+AGG + chr7_4:29287126-29287145 None:intergenic 40.0%
TTTCTGAATTGTGTTGCAGG+CGG - chr7_4:29287293-29287312 Msa1148780:three_prime_UTR 40.0%
ATGCAGCTTAGCACAAAATG+GGG + chr7_4:29287371-29287390 None:intergenic 40.0%
AATATTGTCAACTGCGGATG+CGG - chr7_4:29287838-29287857 Msa1148780:intron 40.0%
!!! ATTTTTTTTGGTAGTGGCCG+GGG - chr7_4:29287956-29287975 Msa1148780:intron 40.0%
TGCATACTATATGCAAGGTC+CGG + chr7_4:29287990-29288009 None:intergenic 40.0%
! TGAGCTTAGCTTAGTTGGTA+GGG + chr7_4:29288017-29288036 None:intergenic 40.0%
TTGTGGATCGTGGAAAATAG+CGG + chr7_4:29288561-29288580 None:intergenic 40.0%
AGAAGCAACAAAGATTCCAC+TGG + chr7_4:29288719-29288738 None:intergenic 40.0%
! TCTTTGTTGCTTCTATTGCC+TGG - chr7_4:29288725-29288744 Msa1148780:intron 40.0%
ATTGCCTGGTATCATGAGTT+TGG - chr7_4:29288739-29288758 Msa1148780:intron 40.0%
ACAACCAAACTCATGATACC+AGG + chr7_4:29288746-29288765 None:intergenic 40.0%
ATTCAAGCCGAGTGTATTTG+GGG - chr7_4:29288854-29288873 Msa1148780:intron 40.0%
GCATTCCCTTTAAACTGCAT+TGG - chr7_4:29288909-29288928 Msa1148780:intron 40.0%
CCTATGCCAATGCAGTTTAA+AGG + chr7_4:29288918-29288937 None:intergenic 40.0%
! CCTTTAAACTGCATTGGCAT+AGG - chr7_4:29288915-29288934 Msa1148780:intron 40.0%
TGGTGGAACAGCATCTAATT+TGG - chr7_4:29288956-29288975 Msa1148780:intron 40.0%
!! TTTGGTGCCAGTTGTTAATC+AGG - chr7_4:29288974-29288993 Msa1148780:intron 40.0%
CGGGTATAAGATTTGTCAAC+AGG + chr7_4:29289047-29289066 None:intergenic 40.0%
!! TCAGACATTTCTGGTAGGTA+AGG - chr7_4:29289110-29289129 Msa1148780:intron 40.0%
!! CAGACATTTCTGGTAGGTAA+GGG - chr7_4:29289111-29289130 Msa1148780:intron 40.0%
TTAGAGAAAGAGGCTTATGC+GGG - chr7_4:29289310-29289329 Msa1148780:intron 40.0%
! AGGGTCTTTTTGCAGATTGA+AGG + chr7_4:29289345-29289364 None:intergenic 40.0%
GAGTTTAAAAGCTGTTGCTG+AGG - chr7_4:29289366-29289385 Msa1148780:intron 40.0%
GCCCAAAGTAACCTTAACTT+TGG + chr7_4:29289394-29289413 None:intergenic 40.0%
!! TTTTCTGCAAGTTGAGGAAG+AGG - chr7_4:29289417-29289436 Msa1148780:intron 40.0%
ATCAACCCCTCACAAATGAA+TGG + chr7_4:29290524-29290543 None:intergenic 40.0%
GTAATATGAGACAAGGGGAT+AGG + chr7_4:29290660-29290679 None:intergenic 40.0%
! AAGATTTTACAGAGGCAACC+CGG + chr7_4:29290996-29291015 None:intergenic 40.0%
! TGCCCCTTAAGATTTTACAG+AGG + chr7_4:29291004-29291023 None:intergenic 40.0%
TGCTAAATGAGAGAACCTGT+TGG + chr7_4:29291080-29291099 None:intergenic 40.0%
AATGAGCCTACACTACTCAA+AGG + chr7_4:29291151-29291170 None:intergenic 40.0%
GTACAGAACATTACAAGGTC+TGG - chr7_4:29291336-29291355 Msa1148780:intron 40.0%
TTTCTCGGGTATTTGGTCTA+CGG - chr7_4:29291591-29291610 Msa1148780:intron 40.0%
ATCCCTCATGACAAAAGGAA+TGG + chr7_4:29291709-29291728 None:intergenic 40.0%
GACATATCCCTCATGACAAA+AGG + chr7_4:29291714-29291733 None:intergenic 40.0%
CTATGGAGCGGTTCATATAT+GGG + chr7_4:29291906-29291925 None:intergenic 40.0%
ACTATGGAGCGGTTCATATA+TGG + chr7_4:29291907-29291926 None:intergenic 40.0%
TGCTTTCAGAAACTATGGAG+CGG + chr7_4:29291918-29291937 None:intergenic 40.0%
CATGTTTGCCTTTGTAAGCT+AGG + chr7_4:29291963-29291982 None:intergenic 40.0%
ACCATGGGTAGCAAATATAC+GGG + chr7_4:29292184-29292203 None:intergenic 40.0%
CACCATGGGTAGCAAATATA+CGG + chr7_4:29292185-29292204 None:intergenic 40.0%
!! TTAGTTATAGCTCTGGCAGA+TGG - chr7_4:29292222-29292241 Msa1148780:intron 40.0%
!! TAGTTATAGCTCTGGCAGAT+GGG - chr7_4:29292223-29292242 Msa1148780:intron 40.0%
! TGGTCTTTTCTACTCTGTCT+TGG - chr7_4:29292413-29292432 Msa1148780:intron 40.0%
! GATTGAGGATGGCCTTTTAT+TGG + chr7_4:29292580-29292599 None:intergenic 40.0%
TACCTTGTTCCCTTCATTAG+TGG - chr7_4:29292604-29292623 Msa1148780:intron 40.0%
GATAGGACTCCACTAATGAA+GGG + chr7_4:29292616-29292635 None:intergenic 40.0%
! TATCCTTGGCATCTCACTTT+TGG + chr7_4:29292716-29292735 None:intergenic 40.0%
GACATATGTGTTCGACAATG+AGG + chr7_4:29292784-29292803 None:intergenic 40.0%
CAACTTATCAACATTCTCCC+AGG - chr7_4:29292919-29292938 Msa1148780:intron 40.0%
ACGAAAATTGGGTTTGAGTC+GGG + chr7_4:29292978-29292997 None:intergenic 40.0%
GACGAAAATTGGGTTTGAGT+CGG + chr7_4:29292979-29292998 None:intergenic 40.0%
TCAACTAAACAGCTTCCATG+TGG + chr7_4:29293067-29293086 None:intergenic 40.0%
! TAGGTTAATTGGTGGGTCAT+AGG - chr7_4:29293134-29293153 Msa1148780:intron 40.0%
! ATTGGTGGGTCATAGGAAAT+AGG - chr7_4:29293141-29293160 Msa1148780:intron 40.0%
!! TCTGAAACCCCATTTTGTTG+TGG - chr7_4:29293201-29293220 Msa1148780:intron 40.0%
!! CTGAAACCCCATTTTGTTGT+GGG - chr7_4:29293202-29293221 Msa1148780:intron 40.0%
!! TGAAACCCCATTTTGTTGTG+GGG - chr7_4:29293203-29293222 Msa1148780:intron 40.0%
CCTTAATGGTGTCTCGAATA+TGG + chr7_4:29293649-29293668 None:intergenic 40.0%
CCATATTCGAGACACCATTA+AGG - chr7_4:29293646-29293665 Msa1148780:intron 40.0%
AAGAAACTCAACCACGTCAA+AGG + chr7_4:29293731-29293750 None:intergenic 40.0%
TTTCTTATGCCCTTCAAGAG+TGG - chr7_4:29293745-29293764 Msa1148780:intron 40.0%
TGGTTCATACCACTCTTGAA+GGG + chr7_4:29293757-29293776 None:intergenic 40.0%
TTGGTTCATACCACTCTTGA+AGG + chr7_4:29293758-29293777 None:intergenic 40.0%
AAGAGTGGTATGAACCAACT+GGG - chr7_4:29293760-29293779 Msa1148780:intron 40.0%
ATGGCTAAAACTACCTTGGT+GGG + chr7_4:29293805-29293824 None:intergenic 40.0%
TTGCATGGCTAAAACTACCT+TGG + chr7_4:29293809-29293828 None:intergenic 40.0%
!!! AGCTGGTTTTTCTTCAGACT+TGG - chr7_4:29293864-29293883 Msa1148780:intron 40.0%
! TATCTTTATTTAGCCCCGCT+GGG - chr7_4:29293994-29294013 Msa1148780:CDS 40.0%
TGTTAAGGATGTGCTTCGTT+TGG - chr7_4:29294026-29294045 Msa1148780:CDS 40.0%
TGGGTCTCTGATCAAATTGA+TGG - chr7_4:29294049-29294068 Msa1148780:CDS 40.0%
GTCTCTGATCAAATTGATGG+TGG - chr7_4:29294052-29294071 Msa1148780:CDS 40.0%
!! CTGATCAAATTGATGGTGGA+AGG - chr7_4:29294056-29294075 Msa1148780:CDS 40.0%
CTTAGCAATGCAGAACATTG+TGG + chr7_4:29294091-29294110 None:intergenic 40.0%
CACAATGTTCTGCATTGCTA+AGG - chr7_4:29294089-29294108 Msa1148780:CDS 40.0%
ACTTCCTTCATTGCAGCTAT+TGG + chr7_4:29294129-29294148 None:intergenic 40.0%
CTCCACAACAAAGGTAATTG+GGG - chr7_4:29294194-29294213 Msa1148780:intron 40.0%
AACCCCAATTACCTTTGTTG+TGG + chr7_4:29294199-29294218 None:intergenic 40.0%
! GGGTTTTTCTGCAATGAAAG+TGG - chr7_4:29294214-29294233 Msa1148780:intron 40.0%
ATTTGATCGTCTCCTTTCCT+GGG + chr7_4:29294469-29294488 None:intergenic 40.0%
CATCATACTTTCGTTTCAGG+TGG - chr7_4:29294594-29294613 Msa1148780:intron 40.0%
CACAGTTGTGTCAATGTATG+AGG - chr7_4:29294648-29294667 Msa1148780:intron 40.0%
GTCAGACTGACAAACAAAGT+TGG - chr7_4:29294725-29294744 Msa1148780:intron 40.0%
AGACTGACAAACAAAGTTGG+TGG - chr7_4:29294728-29294747 Msa1148780:intron 40.0%
! CATGGTTTTTGAACGTTGCT+GGG + chr7_4:29294764-29294783 None:intergenic 40.0%
! ACATGGTTTTTGAACGTTGC+TGG + chr7_4:29294765-29294784 None:intergenic 40.0%
AATGCCCATAAAACGGACAA+AGG - chr7_4:29294822-29294841 Msa1148780:intron 40.0%
TCTCTTTGCCCTGTCTATTT+AGG - chr7_4:29294875-29294894 Msa1148780:intron 40.0%
TCGATAAGTTAGGTTTAGGC+CGG - chr7_4:29295031-29295050 Msa1148780:intron 40.0%
!! AAGTCGGTTTTCCAAGATCA+AGG - chr7_4:29295443-29295462 Msa1148780:intron 40.0%
CAGGCAGTTTAACATGTCTT+TGG + chr7_4:29295496-29295515 None:intergenic 40.0%
ACATGTTAAACTGCCTGAGT+TGG - chr7_4:29295499-29295518 Msa1148780:intron 40.0%
GTTGGATGGTAGTTAATTGC+AGG - chr7_4:29295517-29295536 Msa1148780:intron 40.0%
CTGTTGTGCTAATGTATTGC+AGG - chr7_4:29295805-29295824 Msa1148780:intron 40.0%
TTGTGCTAATGTATTGCAGG+AGG - chr7_4:29295808-29295827 Msa1148780:intron 40.0%
AGCTTGATTGGAAGGTCTTT+AGG - chr7_4:29295930-29295949 Msa1148780:CDS 40.0%
CTAAGCTCACTTCCATTTGA+GGG + chr7_4:29295982-29296001 None:intergenic 40.0%
ACTAAGCTCACTTCCATTTG+AGG + chr7_4:29295983-29296002 None:intergenic 40.0%
GAAATAGCATTGCTTTCGGT+TGG - chr7_4:29296074-29296093 Msa1148780:intron 40.0%
CCCGTTAAGACTTAGGAAAG+TGG - chr7_4:29287058-29287077 Msa1148780:three_prime_UTR 45.0%
AGTGAGAGTGAGAGTGAAGT+TGG + chr7_4:29287168-29287187 None:intergenic 45.0%
AACTTCACTCTCACTCTCAC+TGG - chr7_4:29287167-29287186 Msa1148780:three_prime_UTR 45.0%
ACGGTGATTTGAGGGGAAAA+AGG + chr7_4:29287221-29287240 None:intergenic 45.0%
GGGAAGGGTGAATGTGTAAA+AGG + chr7_4:29287409-29287428 None:intergenic 45.0%
!! TTCGTAGTCTGATTCGGGAA+GGG + chr7_4:29287424-29287443 None:intergenic 45.0%
!! ATTCGTAGTCTGATTCGGGA+AGG + chr7_4:29287425-29287444 None:intergenic 45.0%
CGAATTTCAAGACTGCTCCA+AGG - chr7_4:29287440-29287459 Msa1148780:CDS 45.0%
! GCTATAGTGCTGTTGTGTAG+CGG + chr7_4:29287885-29287904 None:intergenic 45.0%
CATACTATATGCAAGGTCCG+GGG + chr7_4:29287988-29288007 None:intergenic 45.0%
GCATACTATATGCAAGGTCC+GGG + chr7_4:29287989-29288008 None:intergenic 45.0%
GTGAGCTTAGCTTAGTTGGT+AGG + chr7_4:29288018-29288037 None:intergenic 45.0%
CCTAGTGAGCTTAGCTTAGT+TGG + chr7_4:29288022-29288041 None:intergenic 45.0%
CCAACTAAGCTAAGCTCACT+AGG - chr7_4:29288019-29288038 Msa1148780:intron 45.0%
! TCGTTGTTGATTGTGGATCG+TGG + chr7_4:29288571-29288590 None:intergenic 45.0%
!! TCCTGTTTCTGTACAACCAG+TGG - chr7_4:29288700-29288719 Msa1148780:CDS 45.0%
! TCCACTGGTTGTACAGAAAC+AGG + chr7_4:29288704-29288723 None:intergenic 45.0%
TTAAAGGGAATGCCCGAAGA+CGG + chr7_4:29288902-29288921 None:intergenic 45.0%
!! ACAGCTCAGACATTTCTGGT+AGG - chr7_4:29289105-29289124 Msa1148780:intron 45.0%
TAGAGAAAGAGGCTTATGCG+GGG - chr7_4:29289311-29289330 Msa1148780:intron 45.0%
TTGCTGAGGGTCCAAAGTTA+AGG - chr7_4:29289380-29289399 Msa1148780:intron 45.0%
! TGCAAGTTGAGGAAGAGGTA+GGG - chr7_4:29289422-29289441 Msa1148780:intron 45.0%
!! TCAAGCGTTTCGAGTTCTGT+TGG - chr7_4:29289953-29289972 Msa1148780:intron 45.0%
!! CGTTTCGAGTTCTGTTGGTA+TGG - chr7_4:29289958-29289977 Msa1148780:intron 45.0%
GCCATTCTATCTGTGCTAGA+TGG - chr7_4:29290023-29290042 Msa1148780:intron 45.0%
GCCATCTAGCACAGATAGAA+TGG + chr7_4:29290027-29290046 None:intergenic 45.0%
TTCTATCTGTGCTAGATGGC+TGG - chr7_4:29290027-29290046 Msa1148780:intron 45.0%
!! GGTGAGTGTTGCCTTTTACA+AGG + chr7_4:29290066-29290085 None:intergenic 45.0%
TGTAAAAGGCAACACTCACC+AGG - chr7_4:29290066-29290085 Msa1148780:intron 45.0%
TAAGTTCCAGGGTATGCGTA+TGG - chr7_4:29290202-29290221 Msa1148780:intron 45.0%
AAGTTCCAGGGTATGCGTAT+GGG - chr7_4:29290203-29290222 Msa1148780:intron 45.0%
! ATCACAGCAGGAGCTTTGTA+AGG + chr7_4:29290448-29290467 None:intergenic 45.0%
CTGTGATGTGATCCAGTAGA+AGG - chr7_4:29290461-29290480 Msa1148780:intron 45.0%
TCCCTTGCCATTCATTTGTG+AGG - chr7_4:29290514-29290533 Msa1148780:intron 45.0%
CCCTCACAAATGAATGGCAA+GGG + chr7_4:29290518-29290537 None:intergenic 45.0%
CCCTTGCCATTCATTTGTGA+GGG - chr7_4:29290515-29290534 Msa1148780:intron 45.0%
CCTTGCCATTCATTTGTGAG+GGG - chr7_4:29290516-29290535 Msa1148780:intron 45.0%
!! GGGGATAGGGAGTATTTGTT+TGG + chr7_4:29290646-29290665 None:intergenic 45.0%
!! CTTAAGGGGCATCTTGACTT+TGG - chr7_4:29291013-29291032 Msa1148780:CDS 45.0%
TTGCCTAAATAGGAGCCAAC+AGG - chr7_4:29291062-29291081 Msa1148780:CDS 45.0%
!! GAACCTGTTGGCTCCTATTT+AGG + chr7_4:29291068-29291087 None:intergenic 45.0%
! CGCATCTTTTCTCGGGTATT+TGG - chr7_4:29291584-29291603 Msa1148780:intron 45.0%
CGTTGTTGCCTAGCTTACAA+AGG - chr7_4:29291952-29291971 Msa1148780:CDS 45.0%
! TCCCGTATATTTGCTACCCA+TGG - chr7_4:29292180-29292199 Msa1148780:intron 45.0%
!! AGTTATAGCTCTGGCAGATG+GGG - chr7_4:29292224-29292243 Msa1148780:intron 45.0%
! CAAGGTATGCTGATTGAGGA+TGG + chr7_4:29292591-29292610 None:intergenic 45.0%
! GGAACAAGGTATGCTGATTG+AGG + chr7_4:29292595-29292614 None:intergenic 45.0%
CTCCACTAATGAAGGGAACA+AGG + chr7_4:29292609-29292628 None:intergenic 45.0%
GGATAGGACTCCACTAATGA+AGG + chr7_4:29292617-29292636 None:intergenic 45.0%
TTAGTGGAGTCCTATCCTGT+TGG - chr7_4:29292620-29292639 Msa1148780:intron 45.0%
CATGGAGATTCCAACAGGAT+AGG + chr7_4:29292633-29292652 None:intergenic 45.0%
ATTCTTGCATAGAGACCTCG+AGG + chr7_4:29292661-29292680 None:intergenic 45.0%
!! CTTGGCATCTCACTTTTGGT+GGG + chr7_4:29292712-29292731 None:intergenic 45.0%
! AGATAATCGTTGGTTGCGAG+TGG + chr7_4:29292892-29292911 None:intergenic 45.0%
CTCGAATATGGCTTCGTCAT+AGG + chr7_4:29293637-29293656 None:intergenic 45.0%
CAAGAGTGGTATGAACCAAC+TGG - chr7_4:29293759-29293778 Msa1148780:intron 45.0%
GAACCAACTGGGTCAACTAT+AGG - chr7_4:29293771-29293790 Msa1148780:intron 45.0%
CTACCTATAGTTGACCCAGT+TGG + chr7_4:29293777-29293796 None:intergenic 45.0%
ATAGGTAGTTTCACCCACCA+AGG - chr7_4:29293789-29293808 Msa1148780:intron 45.0%
CATGGCTAAAACTACCTTGG+TGG + chr7_4:29293806-29293825 None:intergenic 45.0%
ATCTTTCTTGGAGGGTTGCA+CGG - chr7_4:29293899-29293918 Msa1148780:intron 45.0%
CTAAGTGCACGAGTCCTATA+CGG - chr7_4:29293955-29293974 Msa1148780:CDS 45.0%
! CTATCTTTATTTAGCCCCGC+TGG - chr7_4:29293993-29294012 Msa1148780:CDS 45.0%
! ATCTTTATTTAGCCCCGCTG+GGG - chr7_4:29293995-29294014 Msa1148780:CDS 45.0%
TAAGGATGTGCTTCGTTTGG+TGG - chr7_4:29294029-29294048 Msa1148780:CDS 45.0%
AAGGATGTGCTTCGTTTGGT+GGG - chr7_4:29294030-29294049 Msa1148780:CDS 45.0%
TGCAGCTATTGGCACCTTAA+GGG + chr7_4:29294118-29294137 None:intergenic 45.0%
TTGCAGCTATTGGCACCTTA+AGG + chr7_4:29294119-29294138 None:intergenic 45.0%
AGATGCAGAGTCTTCCAAGA+TGG - chr7_4:29294253-29294272 Msa1148780:CDS 45.0%
GATGCAGAGTCTTCCAAGAT+GGG - chr7_4:29294254-29294273 Msa1148780:CDS 45.0%
ATGCAGAGTCTTCCAAGATG+GGG - chr7_4:29294255-29294274 Msa1148780:CDS 45.0%
TCCGGCACCAACTTTCTTAT+AGG - chr7_4:29294281-29294300 Msa1148780:CDS 45.0%
!! GCCTATAAGAAAGTTGGTGC+CGG + chr7_4:29294285-29294304 None:intergenic 45.0%
TTTGATCGTCTCCTTTCCTG+GGG + chr7_4:29294468-29294487 None:intergenic 45.0%
CATTTGATCGTCTCCTTTCC+TGG + chr7_4:29294470-29294489 None:intergenic 45.0%
ACACAACTGTGTCCATGTTG+TGG + chr7_4:29294639-29294658 None:intergenic 45.0%
!! GAGCCAACCCATTGATTTAC+CGG - chr7_4:29294696-29294715 Msa1148780:intron 45.0%
TGTCCGGTAAATCAATGGGT+TGG + chr7_4:29294702-29294721 None:intergenic 45.0%
CTGCTGTCCGGTAAATCAAT+GGG + chr7_4:29294706-29294725 None:intergenic 45.0%
ACTGCTGTCCGGTAAATCAA+TGG + chr7_4:29294707-29294726 None:intergenic 45.0%
AAGGAATTAAGGGCCCTTAC+AGG - chr7_4:29294841-29294860 Msa1148780:intron 45.0%
AATTAAGGGCCCTTACAGGA+TGG - chr7_4:29294845-29294864 Msa1148780:intron 45.0%
AGTTTCCAGTAGGGACTTAC+CGG + chr7_4:29295053-29295072 None:intergenic 45.0%
AAGTCCCTACTGGAAACTGT+TGG - chr7_4:29295055-29295074 Msa1148780:intron 45.0%
GGAACCAACAGTTTCCAGTA+GGG + chr7_4:29295062-29295081 None:intergenic 45.0%
TGGAACCAACAGTTTCCAGT+AGG + chr7_4:29295063-29295082 None:intergenic 45.0%
ATGGGGTTTCAAAGCGAGTT+TGG - chr7_4:29295233-29295252 Msa1148780:intron 45.0%
GGTTTCAAAGCGAGTTTGGA+GGG - chr7_4:29295237-29295256 Msa1148780:intron 45.0%
GTTTCAAAGCGAGTTTGGAG+GGG - chr7_4:29295238-29295257 Msa1148780:intron 45.0%
TTTCAAAGCGAGTTTGGAGG+GGG - chr7_4:29295239-29295258 Msa1148780:intron 45.0%
! GTTAAACTGCCTGAGTTGGA+TGG - chr7_4:29295503-29295522 Msa1148780:intron 45.0%
! AGTGAGCAAGTAAAGGTGCA+TGG + chr7_4:29295735-29295754 None:intergenic 45.0%
TGTCAGACAGCTCAAGAAGA+AGG + chr7_4:29295845-29295864 None:intergenic 45.0%
!!! TATTTTTTTTTTTTTTTTTG+AGG - chr7_4:29291848-29291867 Msa1148780:intron 5.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG - chr7_4:29291849-29291868 Msa1148780:intron 5.0%
AGAGTGAGAGTGAAGTTGGC+GGG + chr7_4:29287164-29287183 None:intergenic 50.0%
GAGAGTGAGAGTGAAGTTGG+CGG + chr7_4:29287165-29287184 None:intergenic 50.0%
CAGCTTAGCACAAAATGGGG+AGG + chr7_4:29287368-29287387 None:intergenic 50.0%
AGCTGCATATGCAGCAGAGA+AGG - chr7_4:29287383-29287402 Msa1148780:CDS 50.0%
TCTGCAGCCCCAAATACACT+CGG + chr7_4:29288864-29288883 None:intergenic 50.0%
! CTGCATTGGCATAGGAGCTT+TGG - chr7_4:29288923-29288942 Msa1148780:intron 50.0%
! GGAGCTTTGGTTGACTCTGA+TGG - chr7_4:29288936-29288955 Msa1148780:intron 50.0%
! GCTTTGGTTGACTCTGATGG+TGG - chr7_4:29288939-29288958 Msa1148780:intron 50.0%
CGTGACAGCTCAGACATTTC+TGG - chr7_4:29289101-29289120 Msa1148780:intron 50.0%
TTGCAGTGCAGTGCAGCAAA+AGG - chr7_4:29289222-29289241 Msa1148780:intron 50.0%
AGAGAAAGAGGCTTATGCGG+GGG - chr7_4:29289312-29289331 Msa1148780:intron 50.0%
!!! GGCTGCTTTTCTGCAAGTTG+AGG - chr7_4:29289411-29289430 Msa1148780:intron 50.0%
! CTGCAAGTTGAGGAAGAGGT+AGG - chr7_4:29289421-29289440 Msa1148780:intron 50.0%
CTGTGCTAGATGGCTGGAAA+AGG - chr7_4:29290033-29290052 Msa1148780:intron 50.0%
ATCATCCCATACGCATACCC+TGG + chr7_4:29290211-29290230 None:intergenic 50.0%
CTACTGGATCACATCACAGC+AGG + chr7_4:29290460-29290479 None:intergenic 50.0%
CCCCTCACAAATGAATGGCA+AGG + chr7_4:29290519-29290538 None:intergenic 50.0%
! TCTTAAGGGCTCTAGTGCAC+CGG - chr7_4:29290974-29290993 Msa1148780:intron 50.0%
!! AAGGGGCATCTTGACTTTGG+AGG - chr7_4:29291016-29291035 Msa1148780:CDS 50.0%
GCAGTGCCTTTGAGTAGTGT+AGG - chr7_4:29291142-29291161 Msa1148780:CDS 50.0%
! CTAGTGGGCGCAAAACTTGT+AGG - chr7_4:29291663-29291682 Msa1148780:intron 50.0%
AGGTGCATGGAGATTCCAAC+AGG + chr7_4:29292638-29292657 None:intergenic 50.0%
!! CCTTGGCATCTCACTTTTGG+TGG + chr7_4:29292713-29292732 None:intergenic 50.0%
CCACCAAAAGTGAGATGCCA+AGG - chr7_4:29292710-29292729 Msa1148780:intron 50.0%
TGGCTTCGTCATAGGTGTCT+CGG + chr7_4:29293629-29293648 None:intergenic 50.0%
CTGAAGCAGTTCCTTTGACG+TGG - chr7_4:29293717-29293736 Msa1148780:intron 50.0%
AGATTGGGACAGAGAGACTG+AGG - chr7_4:29293839-29293858 Msa1148780:intron 50.0%
GATTGGGACAGAGAGACTGA+GGG - chr7_4:29293840-29293859 Msa1148780:intron 50.0%
ACTTCCACGTGTTGCCGTAT+AGG + chr7_4:29293972-29293991 None:intergenic 50.0%
TTAACACCGATCAACCCCAG+CGG + chr7_4:29294012-29294031 None:intergenic 50.0%
!! CATTGCTAAGGGCACCCTTA+AGG - chr7_4:29294101-29294120 Msa1148780:intron 50.0%
GGTGCCAATAGCTGCAATGA+AGG - chr7_4:29294122-29294141 Msa1148780:intron 50.0%
CGGACTTCACTGTGAAACAG+CGG + chr7_4:29294162-29294181 None:intergenic 50.0%
!! TTCAGGTGGCTTTGAACCAG+TGG - chr7_4:29294608-29294627 Msa1148780:intron 50.0%
CCATGTTGTGGTACAACCAC+TGG + chr7_4:29294627-29294646 None:intergenic 50.0%
CCAGTGGTTGTACCACAACA+TGG - chr7_4:29294624-29294643 Msa1148780:intron 50.0%
TTGTCAGTCTGACTGCTGTC+CGG + chr7_4:29294718-29294737 None:intergenic 50.0%
CACTTCCAGCTGTCGAAACT+CGG + chr7_4:29295137-29295156 None:intergenic 50.0%
GGGTTTCAAAGCGAGTTTGG+AGG - chr7_4:29295236-29295255 Msa1148780:intron 50.0%
GAGTAGGGACTAAATGAGCG+TGG - chr7_4:29295572-29295591 Msa1148780:intron 50.0%
GACTGTTCTAACAATCGGCG+TGG + chr7_4:29295871-29295890 None:intergenic 50.0%
GCATTAGGCAGTCCCTCAAA+TGG - chr7_4:29295967-29295986 Msa1148780:CDS 50.0%
! TGCTTTCGGTTGGTCGTTTG+AGG - chr7_4:29296084-29296103 Msa1148780:intron 50.0%
AAGTTGGCGGGGAAAGCAAG+AGG + chr7_4:29287152-29287171 None:intergenic 55.0%
GAGTGAGAGTGAAGTTGGCG+GGG + chr7_4:29287163-29287182 None:intergenic 55.0%
! CTTAAGGGCTCTAGTGCACC+GGG - chr7_4:29290975-29290994 Msa1148780:intron 55.0%
TGGGGTTGCAAGCCTCTATC+TGG - chr7_4:29292242-29292261 Msa1148780:intron 55.0%
AATCTCCATGCACCTCCTCG+AGG - chr7_4:29292643-29292662 Msa1148780:intron 55.0%
CTTGCATAGAGACCTCGAGG+AGG + chr7_4:29292658-29292677 None:intergenic 55.0%
GGCTTCGTCATAGGTGTCTC+GGG + chr7_4:29293628-29293647 None:intergenic 55.0%
ACAGAGAGACTGAGGGAAGC+TGG - chr7_4:29293847-29293866 Msa1148780:intron 55.0%
GAGTCCTATACGGCAACACG+TGG - chr7_4:29293965-29293984 Msa1148780:CDS 55.0%
TAACACCGATCAACCCCAGC+GGG + chr7_4:29294011-29294030 None:intergenic 55.0%
!! GCTGGGGTTGATCGGTGTTA+AGG - chr7_4:29294011-29294030 Msa1148780:CDS 55.0%
TCTTCCAAGATGGGGAGCTC+CGG - chr7_4:29294263-29294282 Msa1148780:CDS 55.0%
!!! CTGTTTTGGCACCCCAGGAA+AGG - chr7_4:29294454-29294473 Msa1148780:CDS 55.0%
TTAGGCCGGTAAGTCCCTAC+TGG - chr7_4:29295045-29295064 Msa1148780:intron 55.0%
AGCTTCCGAGTTTCGACAGC+TGG - chr7_4:29295129-29295148 Msa1148780:intron 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr7_4:29287976-29287995 None:intergenic 60.0%
! AGAGACCTCGAGGAGGTGCA+TGG + chr7_4:29292651-29292670 None:intergenic 60.0%
! TTAGCCCCGCTGGGGTTGAT+CGG - chr7_4:29294003-29294022 Msa1148780:CDS 60.0%
AACACCGATCAACCCCAGCG+GGG + chr7_4:29294010-29294029 None:intergenic 60.0%
!!! GGGTTCTGTTTTGGCACCCC+AGG - chr7_4:29294449-29294468 Msa1148780:CDS 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr7_4:29287968-29287987 Msa1148780:intron 65.0%
! GGTGCCGGAGCTCCCCATCT+TGG + chr7_4:29294270-29294289 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 29287043 29296301 29287043 ID=Msa1148780;Name=Msa1148780
chr7_4 mRNA 29287043 29296301 29287043 ID=Msa1148780-mRNA-1;Parent=Msa1148780;Name=Msa1148780-mRNA-1;_AED=0.22;_eAED=0.22;_QI=183|1|1|1|0.87|0.77|9|306|515
chr7_4 exon 29287043 29287517 29287043 ID=Msa1148780-mRNA-1:exon:7237;Parent=Msa1148780-mRNA-1
chr7_4 exon 29288478 29288731 29288478 ID=Msa1148780-mRNA-1:exon:7236;Parent=Msa1148780-mRNA-1
chr7_4 exon 29290979 29291183 29290979 ID=Msa1148780-mRNA-1:exon:7235;Parent=Msa1148780-mRNA-1
chr7_4 exon 29291932 29292056 29291932 ID=Msa1148780-mRNA-1:exon:7234;Parent=Msa1148780-mRNA-1
chr7_4 exon 29293257 29293403 29293257 ID=Msa1148780-mRNA-1:exon:7233;Parent=Msa1148780-mRNA-1
chr7_4 exon 29293906 29294116 29293906 ID=Msa1148780-mRNA-1:exon:7232;Parent=Msa1148780-mRNA-1
chr7_4 exon 29294218 29294541 29294218 ID=Msa1148780-mRNA-1:exon:7231;Parent=Msa1148780-mRNA-1
chr7_4 exon 29295883 29296032 29295883 ID=Msa1148780-mRNA-1:exon:7230;Parent=Msa1148780-mRNA-1
chr7_4 exon 29296156 29296301 29296156 ID=Msa1148780-mRNA-1:exon:7229;Parent=Msa1148780-mRNA-1
chr7_4 five_prime_UTR 29296156 29296301 29296156 ID=Msa1148780-mRNA-1:five_prime_utr;Parent=Msa1148780-mRNA-1
chr7_4 five_prime_UTR 29295996 29296032 29295996 ID=Msa1148780-mRNA-1:five_prime_utr;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29295883 29295995 29295883 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29294218 29294541 29294218 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29293906 29294116 29293906 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29293257 29293403 29293257 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29291932 29292056 29291932 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29290979 29291183 29290979 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29288478 29288731 29288478 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 CDS 29287349 29287517 29287349 ID=Msa1148780-mRNA-1:cds;Parent=Msa1148780-mRNA-1
chr7_4 three_prime_UTR 29287043 29287348 29287043 ID=Msa1148780-mRNA-1:three_prime_utr;Parent=Msa1148780-mRNA-1
Gene Sequence

>Msa1148780

ATGGCGGAATGTGTAACCTCCCCATTTTGTGCTAAGCTGCATATGCAGCAGAGAAGGCCTTTTACACATTCACCCTTCCCGAATCAGACTACGAATTTCAAGACTGCTCCAAGAAAGTATTTCAGAAATGAATGTGAATTTTTTCACTTCCTTACACAGAAAAAATTCAAGCCGAGTGTATTTGGGGCTGCAGATTTAAAAATTACTCACCGTCTTCGGGCATTCCCTTTAAACTGCATTGGCATAGGAGCTTTGGTTGACTCTGATGGTGGAACAGCATCTAATTTGGTGCCAGTTGTTAATCAGGTTCTTTTGATGGGAAGTATATTGCTCACTTATATGGCTGGAGTAATTCCTGTTGACAAATCTTATACCCGTGATCAAAAGAACAATTCTGTAAAAAATGCATTACGTGACAGCTCAGACATTTCTGGTAGTGCAGTGCAGCAAAAGGATCAAGTTGAGTCAAATTATGTATTACATGTGGTGAGAGAAAAACTTTTGAATTCTCTAAATGCATTAGAGAAAGAGGCTTATGCGGGGGACATCATCCTTCAATCTGCAAAAAGACCCTTGAGTTTAAAAGCTGTTGCTGAGGGTCCAAAGTTAAGGTTACTTTGGGCTGCTTTTCTGCAAGTTGAGGAAGAGGTTAATAATATGTCAAGCGTTTCGAGTTCTGTTGGTATGGATGATCCAGTCAAAGTTTTTTCTGAAGTTATTCAAAGATCATGCCATTCTATCTGTGCTAGATGGCTGGAAAAGGAGTTTTTCCTTGTAAAAGGCAACACTCACCAGGAATTTGTTTCTATGATACTTGAAAAAGTGAAAGGGGATAATGTTATTGTACAGAACATTACAAGGTCTGGCAAGAAAGATCTGTATTCAGAATTACTTTGGTATCTTACTTTTGGTTTGGTCAGGGATGATTGCTGTTATGATTCCCGTATATTTGCTACCCATGGTGTTTCCATTTTAGAAGATTTAGTTATAGCTCTGGCAGATGGGGTTGCAAGCCTCTATCTGGAGTTTATTTCTGTTGATAGTGATGTGTCAAGTAAAACAAATAGCTTGGAGGTGTCATTCTGTGCTTTGTCCACCAGAGAACTCCAAAAATTACGTAATGAGGTGGCTTTGAACCAGTGGTTGTACCACAACATGGACACAGTTGTGTCAATGTATGAGGATCGCTTTGACTTGTGTACACTTGAGAGCCAACCCATTGATTTACCGGACAGCAGTCAGACTGACAAACAAAGTTGGTGGAAGAATCTTACCCAGCAACGTTCAAAAACCATGTCACGTGAGTTATATTGTATTGCGATAAACCATTTCTCAATGCCCATAAAACGGACAAAGGAATTAAGGGCCCTTACAGGATGGAGGTATTACTTCAGCCTTCTTCTTGAGCTGTCTGACATCACCACGCCGATTGTTAGAACAGTCATTAATAAAGCAAGTGAAGCTATCTCGTTCTTTTTGGTTAGCTTGATTGGAAGGTCTTTAGGACTCATTTATACAGGCATTAGGCAGTCCCTCAAATGGAAGTGA

Protein sequence

>Msa1148780

MAECVTSPFCAKLHMQQRRPFTHSPFPNQTTNFKTAPRKYFRNECEFFHFLTQKKFKPSVFGAADLKITHRLRAFPLNCIGIGALVDSDGGTASNLVPVVNQVLLMGSILLTYMAGVIPVDKSYTRDQKNNSVKNALRDSSDISGSAVQQKDQVESNYVLHVVREKLLNSLNALEKEAYAGDIILQSAKRPLSLKAVAEGPKLRLLWAAFLQVEEEVNNMSSVSSSVGMDDPVKVFSEVIQRSCHSICARWLEKEFFLVKGNTHQEFVSMILEKVKGDNVIVQNITRSGKKDLYSELLWYLTFGLVRDDCCYDSRIFATHGVSILEDLVIALADGVASLYLEFISVDSDVSSKTNSLEVSFCALSTRELQKLRNEVALNQWLYHNMDTVVSMYEDRFDLCTLESQPIDLPDSSQTDKQSWWKNLTQQRSKTMSRELYCIAINHFSMPIKRTKELRALTGWRYYFSLLLELSDITTPIVRTVINKASEAISFFLVSLIGRSLGLIYTGIRQSLKWK*