AlfalfaGEDB | Msa0324010

M. sativa cultivar zhongmu-4 / Msa0324010

KEGG: K04078
GO: GO:0003674 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009787 GO:0009788 GO:0009893 GO:0009941 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0019222 GO:0022607 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0035966 GO:0042221 GO:0042651 GO:0043085 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0051259 GO:0051262 GO:0051290 GO:0051291 GO:0051341 GO:0051353 GO:0055035 GO:0061077 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080134 GO:0080135 GO:0090322 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901419 GO:1901420 GO:1901668 GO:1901671 GO:1902882 GO:1902884 GO:1904833 GO:1905957 GO:1905958 GO:2000121 GO:2000377 GO:2000379
PFAM: PF00166.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324010	AFK43693.1	93.846	195	4	1	3	189	60	254	8.11e-124	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324010	sp\|O65282\|CH20_ARATH	74.872	195	41	1	3	189	59	253	3.59e-101	295

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0324010	0.800949	1.133579e-48	-8.615850e-47
Msa0001460	Msa0324010	0.820655	6.116980e-53	-8.615850e-47
Msa0003470	Msa0324010	0.812959	3.260179e-51	-8.615850e-47
Msa0012460	Msa0324010	0.807340	5.302325e-50	-8.615850e-47
Msa0015370	Msa0324010	0.802560	5.293322e-49	-8.615850e-47
Msa0017120	Msa0324010	0.830455	2.908367e-55	-8.615850e-47
Msa0017940	Msa0324010	0.813312	2.728112e-51	-8.615850e-47
Msa0027540	Msa0324010	0.819527	1.108144e-52	-8.615850e-47
Msa0030730	Msa0324010	0.819198	1.317168e-52	-8.615850e-47
Msa0031720	Msa0324010	0.805007	1.643117e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324010	MtrunA17_Chr2g0301241	93.846	195	4	1	3	189	60	254	8.33e-128	359
Msa0324010	MtrunA17_Chr4g0070201	76.410	195	38	1	3	189	59	253	5.31e-107	306
Msa0324010	MtrunA17_Chr3g0139681	38.947	95	56	2	94	188	3	95	1.83e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324010	AT5G20720.1	74.872	195	41	1	3	189	59	253	3.65e-102	295
Msa0324010	AT5G20720.2	74.872	195	41	1	3	189	59	253	3.65e-102	295
Msa0324010	AT5G20720.4	74.872	195	41	1	3	189	59	253	3.65e-102	295
Msa0324010	AT5G20720.3	74.872	195	41	1	3	189	59	253	3.65e-102	295

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Find 72 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTTGACTGTTACTCC+TGG	0.503322	2_4:+28877266	Msa0324010:CDS
AAAGTATGCTGGTACTGAGG+TGG	0.625111	2_4:+28876270	Msa0324010:CDS
AACCTTTGACTGTTACTCCT+GGG	0.561302	2_4:+28877267	Msa0324010:CDS
AAGCTTACTGTTCCAAATGA+AGG	0.450153	2_4:-28876897	None:intergenic
AAGTGATTCCTAACGGGAAC+TGG	0.346232	2_4:+28877476	Msa0324010:three_prime_UTR
AAGTGTCTTTCCTTCTCCAA+CGG	0.569767	2_4:-28876077	None:intergenic
AATCAAGCCTTTGGGTGACA+GGG	0.609714	2_4:+28875958	Msa0324010:CDS
AATGACTTCAAGGGCAAAGA+TGG	0.468491	2_4:+28877320	Msa0324010:CDS
AATTGAAAGGTATCTTTCTT+GGG	0.400779	2_4:+28877731	Msa0324010:three_prime_UTR
ACCAAGGAGAAGCCTTCATT+TGG	0.391255	2_4:+28876885	Msa0324010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAAAGAACGATCATCGA+AGG	-	chr2_4:28876163-28876182	None:intergenic	30.0%
TTTGAAGATGATGACATTGT+TGG	+	chr2_4:28876318-28876337	Msa0324010:intron	30.0%
CACACATGGATAACAATTTA+TGG	+	chr2_4:28876556-28876575	Msa0324010:intron	30.0%
GCATATATTAAACCAGTCAA+TGG	-	chr2_4:28876809-28876828	None:intergenic	30.0%
ATATATGCTGCAGATTGAAA+AGG	+	chr2_4:28876821-28876840	Msa0324010:intron	30.0%
GAACCATATTCATGAGAAAT+AGG	-	chr2_4:28877149-28877168	None:intergenic	30.0%
TTTCTCAAATATTGCTCATC+TGG	-	chr2_4:28877604-28877623	None:intergenic	30.0%
AGATACCTTTCAATTATACC+TGG	-	chr2_4:28877726-28877745	None:intergenic	30.0%
AATTAAAGAACGATCATCGA+AGG	-	chr2_4:28876163-28876182	None:intergenic	30.0%
TTTGAAGATGATGACATTGT+TGG	+	chr2_4:28876318-28876337	Msa0324010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	28875928	28877803	28875928	ID=Msa0324010;Name=Msa0324010
chr2_4	mRNA	28875928	28877803	28875928	ID=Msa0324010-mRNA-1;Parent=Msa0324010;Name=Msa0324010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.66\|0.42\|1\|0.83\|0.85\|7\|377\|189
chr2_4	exon	28875928	28875933	28875928	ID=Msa0324010-mRNA-1:exon:9853;Parent=Msa0324010-mRNA-1
chr2_4	exon	28875950	28876129	28875950	ID=Msa0324010-mRNA-1:exon:9854;Parent=Msa0324010-mRNA-1
chr2_4	exon	28876247	28876301	28876247	ID=Msa0324010-mRNA-1:exon:9855;Parent=Msa0324010-mRNA-1
chr2_4	exon	28876325	28876401	28876325	ID=Msa0324010-mRNA-1:exon:9856;Parent=Msa0324010-mRNA-1
chr2_4	exon	28876834	28876911	28876834	ID=Msa0324010-mRNA-1:exon:9857;Parent=Msa0324010-mRNA-1
chr2_4	exon	28877221	28877394	28877221	ID=Msa0324010-mRNA-1:exon:9858;Parent=Msa0324010-mRNA-1
chr2_4	exon	28877427	28877803	28877427	ID=Msa0324010-mRNA-1:exon:9859;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28875928	28875933	28875928	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28875950	28876129	28875950	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28876247	28876301	28876247	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28876325	28876401	28876325	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28876834	28876911	28876834	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	CDS	28877221	28877394	28877221	ID=Msa0324010-mRNA-1:cds;Parent=Msa0324010-mRNA-1
chr2_4	three_prime_UTR	28877427	28877803	28877427	ID=Msa0324010-mRNA-1:three_prime_utr;Parent=Msa0324010-mRNA-1

Gene Sequence

>Msa0324010

ATGTTATACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATTAAGGAAGCAGAAGAGAAGACACAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGGGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACTGAGGTGGACTTCAATGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAACGATAGAGTTCTGATAAAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAGCCTTCATTTGGAACAGTGGTAGCAGTTGGTCCTGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCAGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>Msa0324010

MLYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS*