AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0587690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587690 MtrunA17_Chr4g0003801 83.077 195 5 2 1 167 1 195 1.94e-111 315
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0587690 AT3G16190.1 64.796 196 40 3 1 167 1 196 1.37e-81 239

Find 49 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAGAGAGATTACATTTA+AGG 0.032171 4_2:-9304054 None:intergenic
TCAAAGGCATTGATATCTTT+TGG 0.220343 4_2:+9309719 Msa0587690:three_prime_UTR
CGCTCCATTCTTGTAATGTT+GGG 0.229591 4_2:-9309641 None:intergenic
TACATACCAAGATGAATTTC+AGG 0.281460 4_2:-9308450 None:intergenic
TCCACAGCCTTGATCACATT+TGG 0.315072 4_2:-9304294 None:intergenic
GAGAGTCCTGTACAAGTAAA+AGG 0.317088 4_2:+9304255 Msa0587690:CDS
CACCTTCATTCATTCCTTCA+AGG 0.372804 4_2:+9308030 Msa0587690:CDS
CCACAGCCTTGATCACATTT+GGG 0.384227 4_2:-9304293 None:intergenic
GCATCAACAAGAACAGTAAC+AGG 0.405100 4_2:-9308411 None:intergenic
TCGCTCCATTCTTGTAATGT+TGG 0.406786 4_2:-9309642 None:intergenic
TTTCAAGAATGACAGAGAAT+TGG 0.416697 4_2:+9304094 Msa0587690:exon
TCATGTGGTGTTCAATTTCA+AGG 0.419000 4_2:+9309695 Msa0587690:three_prime_UTR
TATTTGAATATGTTATTTCA+CGG 0.419742 4_2:-9309802 None:intergenic
AGAGTTAACAGATCAAGCTT+TGG 0.430465 4_2:-9309667 None:intergenic
TATTGATTCCTGCACCTTGA+AGG 0.431306 4_2:-9308044 None:intergenic
ATTATTTGAATATCAAAATA+CGG 0.459378 4_2:+9309828 Msa0587690:three_prime_UTR
AAAGTTGGTCCGACCTCAAA+AGG 0.459605 4_2:+9307916 Msa0587690:CDS
GATGGACTTCTTATTAAAGA+AGG 0.471210 4_2:+9307961 Msa0587690:CDS
ATGGACTTCTTATTAAAGAA+GGG 0.495281 4_2:+9307962 Msa0587690:CDS
ATTATGTATACTAAGTTACT+TGG 0.503639 4_2:+9309771 Msa0587690:three_prime_UTR
GAAGGTGCAGAATTAGTTGA+TGG 0.503655 4_2:+9307943 Msa0587690:CDS
GTACGCGAACACGATCCCTT+GGG 0.511368 4_2:+9307850 Msa0587690:CDS
CAACCCCAACATTACAAGAA+TGG 0.519375 4_2:+9309637 Msa0587690:CDS
GCCACACCTGAAATTCATCT+TGG 0.521036 4_2:+9308444 Msa0587690:CDS
CTATATGCAGAAGGGAAAGT+TGG 0.522761 4_2:+9307901 Msa0587690:CDS
TGTTAACTCTTTGCATCATG+TGG 0.522823 4_2:+9309680 Msa0587690:three_prime_UTR
AGTACGCGAACACGATCCCT+TGG 0.527450 4_2:+9307849 Msa0587690:CDS
TGAAATTCAATGAAACCTCA+AGG 0.527747 4_2:-9309970 None:intergenic
GCTCCATTCTTGTAATGTTG+GGG 0.538993 4_2:-9309640 None:intergenic
TGTTCAATTTCAAGGTTCAA+AGG 0.555329 4_2:+9309703 Msa0587690:three_prime_UTR
AATTGCACTCATCTCCCTTG+AGG 0.557917 4_2:+9309955 Msa0587690:three_prime_UTR
CCCAAATGTGATCAAGGCTG+TGG 0.567094 4_2:+9304293 Msa0587690:CDS
CGTCGGCATCTATATGCAGA+AGG 0.568442 4_2:+9307892 Msa0587690:CDS
ATTATAAAGTTGTGAAGACA+AGG 0.576014 4_2:+9307986 Msa0587690:CDS
TCTTCTTGTAATCGACATGC+AGG 0.585526 4_2:+9304128 Msa0587690:CDS
TGGACTTCTTATTAAAGAAG+GGG 0.586761 4_2:+9307963 Msa0587690:CDS
TGTTGTCCCAAATGTGATCA+AGG 0.588465 4_2:+9304287 Msa0587690:CDS
GAGTTCAACATCTCTTCCCA+AGG 0.590646 4_2:-9307866 None:intergenic
AGTCCTGTACAAGTAAAAGG+AGG 0.598864 4_2:+9304258 Msa0587690:CDS
CACCTTGAAGGAATGAATGA+AGG 0.605018 4_2:-9308032 None:intergenic
CCGACCTCAAAAGGAACTGA+AGG 0.609631 4_2:+9307925 Msa0587690:CDS
GTCCTGTACAAGTAAAAGGA+GGG 0.619967 4_2:+9304259 Msa0587690:CDS
GAAATTCAATGAAACCTCAA+GGG 0.625701 4_2:-9309969 None:intergenic
GAGATGTTGAACTCTTTCGT+CGG 0.629670 4_2:+9307875 Msa0587690:CDS
AGTTCAACATCTCTTCCCAA+GGG 0.646248 4_2:-9307865 None:intergenic
GTCGGCATCTATATGCAGAA+GGG 0.656078 4_2:+9307893 Msa0587690:CDS
GACAGAGAATTGGAATAACA+CGG 0.669989 4_2:+9304104 Msa0587690:CDS
ACCAAGATGAATTTCAGGTG+TGG 0.671951 4_2:-9308445 None:intergenic
GTGGAAATTGCTAGACAGCG+TGG 0.681689 4_2:+9304312 Msa0587690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAGCTTATTATAAATT+CGG + chr4_2:9308859-9308878 Msa0587690:intron 10.0%
!! ATTATTTGAATATCAAAATA+CGG + chr4_2:9309828-9309847 Msa0587690:three_prime_UTR 10.0%
!!! TCTATCTTTAATCTTTTTAA+AGG + chr4_2:9305358-9305377 Msa0587690:intron 15.0%
!! ACCTATTATTAACTAATAAA+GGG - chr4_2:9307583-9307602 None:intergenic 15.0%
!!! TTTTCTATTTTGTTTGATTT+TGG + chr4_2:9309058-9309077 Msa0587690:intron 15.0%
!!! TATTTGAATATGTTATTTCA+CGG - chr4_2:9309805-9309824 None:intergenic 15.0%
!! ATAAAATACACAAAAATCAA+AGG + chr4_2:9309929-9309948 Msa0587690:three_prime_UTR 15.0%
!! TAAAATACACAAAAATCAAA+GGG + chr4_2:9309930-9309949 Msa0587690:three_prime_UTR 15.0%
!!! CTTAGGATGTTTTATTTTTT+TGG + chr4_2:9304178-9304197 Msa0587690:intron 20.0%
!!! AAATTAAGAATTCTGTTTCT+GGG + chr4_2:9304203-9304222 Msa0587690:intron 20.0%
!! TAAATCCAAAACAAAGAAAA+AGG - chr4_2:9304375-9304394 None:intergenic 20.0%
!! TTTAATGTTGGATATATAAG+AGG + chr4_2:9304454-9304473 Msa0587690:intron 20.0%
!! TTAATGTTGGATATATAAGA+GGG + chr4_2:9304455-9304474 Msa0587690:intron 20.0%
!! TGTATACACATCAATATTAA+TGG + chr4_2:9304599-9304618 Msa0587690:intron 20.0%
!! ATGATAGTACAAATATTCAA+AGG + chr4_2:9304704-9304723 Msa0587690:intron 20.0%
!! ATATTAGCCAATAGAATAAA+GGG + chr4_2:9305523-9305542 Msa0587690:intron 20.0%
!! ATTGGATGAACAAAATTAAA+TGG - chr4_2:9305645-9305664 None:intergenic 20.0%
!! ACATTAATTACGTATGAAAT+TGG + chr4_2:9306214-9306233 Msa0587690:intron 20.0%
!! AATATGTAATTGGAATGTAA+TGG + chr4_2:9306562-9306581 Msa0587690:intron 20.0%
!! TATTTGTACTATCATTACAT+TGG - chr4_2:9306817-9306836 None:intergenic 20.0%
!! ATGATAGTACAAATATTCAA+AGG + chr4_2:9304704-9304723 Msa0587690:intron 20.0%
!! TCCCTTTATTAGTTAATAAT+AGG + chr4_2:9307579-9307598 Msa0587690:intron 20.0%
!! CACCTATTATTAACTAATAA+AGG - chr4_2:9307584-9307603 None:intergenic 20.0%
!! AAAGTAGATAGATAGAAAAA+GGG - chr4_2:9307703-9307722 None:intergenic 20.0%
!! TAAAGTAGATAGATAGAAAA+AGG - chr4_2:9307704-9307723 None:intergenic 20.0%
!! ATACATAAACATAAAACTGT+TGG - chr4_2:9308123-9308142 None:intergenic 20.0%
!!! GTTTTATGTTTATGTATGTA+TGG + chr4_2:9308126-9308145 Msa0587690:intron 20.0%
!! AAATTTAGAGACTAAAAAGT+TGG + chr4_2:9308728-9308747 Msa0587690:intron 20.0%
!! TTAATACTATCTTAGGATTT+AGG - chr4_2:9308844-9308863 None:intergenic 20.0%
!!! ATAAGCTTTAATACTATCTT+AGG - chr4_2:9308851-9308870 None:intergenic 20.0%
!!! AGTTTATTATTTTGTATGAG+AGG + chr4_2:9309281-9309300 Msa0587690:intron 20.0%
!!! CTTTAAATCCAATTATTTTG+TGG + chr4_2:9309465-9309484 Msa0587690:intron 20.0%
!! ATTATGTATACTAAGTTACT+TGG + chr4_2:9309771-9309790 Msa0587690:three_prime_UTR 20.0%
!! AAAATACACAAAAATCAAAG+GGG + chr4_2:9309931-9309950 Msa0587690:three_prime_UTR 20.0%
! GAAATTAAGAATTCTGTTTC+TGG + chr4_2:9304202-9304221 Msa0587690:intron 25.0%
! TGGCATTAAGATAAGAATAT+AGG - chr4_2:9304484-9304503 None:intergenic 25.0%
! ATTCTTATCTTAATGCCATA+AGG + chr4_2:9304486-9304505 Msa0587690:intron 25.0%
! TATTGATGTGTATACATGTT+TGG - chr4_2:9304595-9304614 None:intergenic 25.0%
! TACTATCATTACAGTTTCAT+AGG - chr4_2:9304693-9304712 None:intergenic 25.0%
! GTAATTGCAGAAAATTATGA+AGG + chr4_2:9304784-9304803 Msa0587690:intron 25.0%
!!! CTTTAATCTTTTTAAAGGCA+AGG + chr4_2:9305363-9305382 Msa0587690:intron 25.0%
! TTGGTCATTTATTGTTTCAA+AGG - chr4_2:9305450-9305469 None:intergenic 25.0%
!! TTCAAAACATTGCATCATTT+TGG - chr4_2:9305469-9305488 None:intergenic 25.0%
! CATATTAGCCAATAGAATAA+AGG + chr4_2:9305522-9305541 Msa0587690:intron 25.0%
!! TAAGCTTGATAATTCAACAT+TGG - chr4_2:9305663-9305682 None:intergenic 25.0%
! ATTATCAAGCTTACAAAACT+TGG + chr4_2:9305670-9305689 Msa0587690:intron 25.0%
!!! TCATTTTACTGATTCTACAT+GGG - chr4_2:9305794-9305813 None:intergenic 25.0%
! TACCTATTGTTCAAATTGTA+AGG + chr4_2:9306021-9306040 Msa0587690:intron 25.0%
! TTCCTTACAATTTGAACAAT+AGG - chr4_2:9306026-9306045 None:intergenic 25.0%
!! GAAAAGTTTTTGTTCAAAGT+TGG + chr4_2:9306403-9306422 Msa0587690:intron 25.0%
! GTAATTGCAGAAAATTATGA+AGG + chr4_2:9304784-9304803 Msa0587690:intron 25.0%
!! TGATTTTCTCAAATTATTGC+CGG + chr4_2:9307163-9307182 Msa0587690:intron 25.0%
! TATCAGTCATTGATAAATCA+AGG + chr4_2:9307277-9307296 Msa0587690:intron 25.0%
!! CTGTGAGTAAACAAATTTTA+TGG + chr4_2:9307466-9307485 Msa0587690:intron 25.0%
!! TTCACTTGTTTGTGTATTTT+AGG + chr4_2:9307541-9307560 Msa0587690:intron 25.0%
!! ACTAGTACATAGGTATTTTT+GGG - chr4_2:9307616-9307635 None:intergenic 25.0%
! ATGGACTTCTTATTAAAGAA+GGG + chr4_2:9307962-9307981 Msa0587690:CDS 25.0%
! ATTATAAAGTTGTGAAGACA+AGG + chr4_2:9307986-9308005 Msa0587690:CDS 25.0%
!!! GCTATTTTAATAAGTTATCG+TGG - chr4_2:9308243-9308262 None:intergenic 25.0%
!! CAAAATAGAACTTTGTTTGT+AGG + chr4_2:9308327-9308346 Msa0587690:intron 25.0%
! TAGATGTTAATAGTAAGCAA+TGG + chr4_2:9308540-9308559 Msa0587690:intron 25.0%
! ATCAAATTCTTGGACATATT+TGG - chr4_2:9308606-9308625 None:intergenic 25.0%
! AATATGTCCAAGAATTTGAT+TGG + chr4_2:9308606-9308625 Msa0587690:intron 25.0%
!!! ATACTGGTACAATTTTTAAG+AGG - chr4_2:9308705-9308724 None:intergenic 25.0%
! AGTCTCTAAATTTCTAATAC+TGG - chr4_2:9308721-9308740 None:intergenic 25.0%
!! TGACTTGTATATTGGTTATA+AGG + chr4_2:9309207-9309226 Msa0587690:intron 25.0%
!! GACTTGTATATTGGTTATAA+GGG + chr4_2:9309208-9309227 Msa0587690:intron 25.0%
!! ACTTGTATATTGGTTATAAG+GGG + chr4_2:9309209-9309228 Msa0587690:intron 25.0%
! TATCTACAAAAGTAGCTTAT+AGG - chr4_2:9309253-9309272 None:intergenic 25.0%
! AATATTGTTGTAAAGACCAA+AGG + chr4_2:9309356-9309375 Msa0587690:intron 25.0%
! ATTGGATTTAAAGAATTGCA+GGG - chr4_2:9309458-9309477 None:intergenic 25.0%
! AATTGGATTTAAAGAATTGC+AGG - chr4_2:9309459-9309478 None:intergenic 25.0%
! TCTAATGATGACTGATATTT+GGG + chr4_2:9309572-9309591 Msa0587690:intron 25.0%
!! ATTTTTCATGTCTAACACAT+TGG - chr4_2:9309607-9309626 None:intergenic 25.0%
! GTGTTAGACATGAAAAATAT+AGG + chr4_2:9309609-9309628 Msa0587690:CDS 25.0%
TTTCAAGAATGACAGAGAAT+TGG + chr4_2:9304094-9304113 Msa0587690:exon 30.0%
TATGTTCTGTCTCTTTACTT+AGG + chr4_2:9304161-9304180 Msa0587690:intron 30.0%
AGAAAAAGGAAGGAAGTTAA+CGG - chr4_2:9304361-9304380 None:intergenic 30.0%
!! TCCTTCCTTTTTCTTTGTTT+TGG + chr4_2:9304367-9304386 Msa0587690:intron 30.0%
TCCAAAACAAAGAAAAAGGA+AGG - chr4_2:9304371-9304390 None:intergenic 30.0%
TTCAAGTAAACAACATACTC+AGG - chr4_2:9304398-9304417 None:intergenic 30.0%
! ATCTTAATGCCATAAGGTTT+TGG + chr4_2:9304492-9304511 Msa0587690:intron 30.0%
! TCTTAATGCCATAAGGTTTT+GGG + chr4_2:9304493-9304512 Msa0587690:intron 30.0%
!! ATATGTGGTGTCAAAGTTTT+TGG + chr4_2:9304519-9304538 Msa0587690:intron 30.0%
TATACATGTTTGGAAGTCTT+GGG - chr4_2:9304585-9304604 None:intergenic 30.0%
CTAAAGTGAATTGTTCACTT+TGG - chr4_2:9304636-9304655 None:intergenic 30.0%
TTACAGTTTCATAGGTTTGT+GGG - chr4_2:9304685-9304704 None:intergenic 30.0%
ATTACAGTTTCATAGGTTTG+TGG - chr4_2:9304686-9304705 None:intergenic 30.0%
AAGGAACTGAACTTGAATAA+TGG + chr4_2:9304723-9304742 Msa0587690:intron 30.0%
AGGAACTGAACTTGAATAAT+GGG + chr4_2:9304724-9304743 Msa0587690:intron 30.0%
GAATTTAGTACAGTGTCTAA+TGG + chr4_2:9304747-9304766 Msa0587690:intron 30.0%
! AGAAAATTATGAAGGTACAG+AGG + chr4_2:9304792-9304811 Msa0587690:intron 30.0%
AATGAGAAGGGAAATAGAAA+GGG - chr4_2:9304877-9304896 None:intergenic 30.0%
!! ACAAGGTTGATTTTTAATGG+GGG - chr4_2:9304965-9304984 None:intergenic 30.0%
!! GACAAGGTTGATTTTTAATG+GGG - chr4_2:9304966-9304985 None:intergenic 30.0%
!! GGACAAGGTTGATTTTTAAT+GGG - chr4_2:9304967-9304986 None:intergenic 30.0%
!! AGGACAAGGTTGATTTTTAA+TGG - chr4_2:9304968-9304987 None:intergenic 30.0%
TACACCTATTCAATTAGCAT+GGG - chr4_2:9305338-9305357 None:intergenic 30.0%
ATACACCTATTCAATTAGCA+TGG - chr4_2:9305339-9305358 None:intergenic 30.0%
AATTGCTCCCTTTATTCTAT+TGG - chr4_2:9305533-9305552 None:intergenic 30.0%
ATAGAATAAAGGGAGCAATT+TGG + chr4_2:9305533-9305552 Msa0587690:intron 30.0%
CATCAATGTTCACATAAAGA+GGG + chr4_2:9305734-9305753 Msa0587690:intron 30.0%
!!! CTCATTTTACTGATTCTACA+TGG - chr4_2:9305795-9305814 None:intergenic 30.0%
AATCAGTAAAATGAGAGAAG+AGG + chr4_2:9305800-9305819 Msa0587690:intron 30.0%
CTAAGCATATGAATCACAAT+AGG + chr4_2:9305878-9305897 Msa0587690:intron 30.0%
CGTAATTAATGTGCAAGATA+CGG - chr4_2:9306206-9306225 None:intergenic 30.0%
AACAACAGGGAATATGTAAT+TGG + chr4_2:9306552-9306571 Msa0587690:intron 30.0%
!! TGATCGAATTTTTGCTGTAT+TGG - chr4_2:9306710-9306729 None:intergenic 30.0%
! TTCGATCAAATGTCTTATTG+CGG + chr4_2:9306722-9306741 Msa0587690:intron 30.0%
AAGGAACTGAACTTGAATAA+TGG + chr4_2:9304723-9304742 Msa0587690:intron 30.0%
AGGAACTGAACTTGAATAAT+GGG + chr4_2:9304724-9304743 Msa0587690:intron 30.0%
! ACTTGAATAATGGGGAATTT+AGG + chr4_2:9304733-9304752 Msa0587690:intron 30.0%
! AGAAAATTATGAAGGTACAG+AGG + chr4_2:9304792-9304811 Msa0587690:intron 30.0%
AATGAGAAGGGAAATAGAAA+GGG - chr4_2:9304877-9304896 None:intergenic 30.0%
TCATTAGACAAGTCATTAGA+CGG + chr4_2:9307383-9307402 Msa0587690:intron 30.0%
TATTAACCTCTACTGAATTC+AGG + chr4_2:9307412-9307431 Msa0587690:intron 30.0%
ATTAACCTCTACTGAATTCA+GGG + chr4_2:9307413-9307432 Msa0587690:intron 30.0%
GGAGCGAAATTCAATATTAA+TGG + chr4_2:9307435-9307454 Msa0587690:intron 30.0%
! CACTAGTACATAGGTATTTT+TGG - chr4_2:9307617-9307636 None:intergenic 30.0%
TTATGAATGCACTAGTACAT+AGG - chr4_2:9307626-9307645 None:intergenic 30.0%
! GTTAATGACAACTAGCATTT+TGG - chr4_2:9307733-9307752 None:intergenic 30.0%
! GATGGACTTCTTATTAAAGA+AGG + chr4_2:9307961-9307980 Msa0587690:CDS 30.0%
TGGACTTCTTATTAAAGAAG+GGG + chr4_2:9307963-9307982 Msa0587690:CDS 30.0%
TACATACCAAGATGAATTTC+AGG - chr4_2:9308453-9308472 None:intergenic 30.0%
! ATTTCAAGTGTTGCATTTGA+TGG + chr4_2:9308479-9308498 Msa0587690:intron 30.0%
GCATTTGATGGAACTTTATT+TGG + chr4_2:9308491-9308510 Msa0587690:intron 30.0%
AGTTTGTGTTACCATTAGTT+TGG + chr4_2:9308658-9308677 Msa0587690:intron 30.0%
!! TTTGATTTTGGATTCCTATC+AGG + chr4_2:9309070-9309089 Msa0587690:intron 30.0%
! TTGATTTTGGATTCCTATCA+GGG + chr4_2:9309071-9309090 Msa0587690:intron 30.0%
TATATAGACCATCCGTTATT+TGG + chr4_2:9309113-9309132 Msa0587690:intron 30.0%
! TAGTGGTATGACTTGTATAT+TGG + chr4_2:9309199-9309218 Msa0587690:intron 30.0%
! CTTGTATATTGGTTATAAGG+GGG + chr4_2:9309210-9309229 Msa0587690:intron 30.0%
TCAGGATTAAGGTTAAAACT+TGG - chr4_2:9309394-9309413 None:intergenic 30.0%
ACCTTAATCCTGAATTTACA+TGG + chr4_2:9309401-9309420 Msa0587690:intron 30.0%
ACCATGTAAATTCAGGATTA+AGG - chr4_2:9309405-9309424 None:intergenic 30.0%
GTCTAATGATGACTGATATT+TGG + chr4_2:9309571-9309590 Msa0587690:intron 30.0%
TGTTCAATTTCAAGGTTCAA+AGG + chr4_2:9309703-9309722 Msa0587690:three_prime_UTR 30.0%
!!! TCAAAGGCATTGATATCTTT+TGG + chr4_2:9309719-9309738 Msa0587690:three_prime_UTR 30.0%
GAAATTCAATGAAACCTCAA+GGG - chr4_2:9309972-9309991 None:intergenic 30.0%
TGAAATTCAATGAAACCTCA+AGG - chr4_2:9309973-9309992 None:intergenic 30.0%
GACAGAGAATTGGAATAACA+CGG + chr4_2:9304104-9304123 Msa0587690:CDS 35.0%
ACTACGGATGAGTTTAATGT+TGG + chr4_2:9304442-9304461 Msa0587690:intron 35.0%
ATACATGTTTGGAAGTCTTG+GGG - chr4_2:9304584-9304603 None:intergenic 35.0%
GTATACATGTTTGGAAGTCT+TGG - chr4_2:9304586-9304605 None:intergenic 35.0%
TTCATAGGTTTGTGGGATAT+AGG - chr4_2:9304678-9304697 None:intergenic 35.0%
GGAACTGAACTTGAATAATG+GGG + chr4_2:9304725-9304744 Msa0587690:intron 35.0%
ATGAGAAGGGAAATAGAAAG+GGG - chr4_2:9304876-9304895 None:intergenic 35.0%
GAATGAGAAGGGAAATAGAA+AGG - chr4_2:9304878-9304897 None:intergenic 35.0%
AGGGGTTATAAGAATGAGAA+GGG - chr4_2:9304889-9304908 None:intergenic 35.0%
AAGGGGTTATAAGAATGAGA+AGG - chr4_2:9304890-9304909 None:intergenic 35.0%
AAAAATCAACCTTGTCCTCA+AGG + chr4_2:9304970-9304989 Msa0587690:intron 35.0%
TGAAGTTAGGACAATGCATT+TGG + chr4_2:9304994-9305013 Msa0587690:intron 35.0%
!! GGAGGTTATTTTCTTGTCAT+TGG - chr4_2:9305067-9305086 None:intergenic 35.0%
ATGACAAGAAAATAACCTCC+CGG + chr4_2:9305067-9305086 Msa0587690:intron 35.0%
ATTGTGAGGAACTGTTTGTA+TGG + chr4_2:9305104-9305123 Msa0587690:intron 35.0%
!! GTCAACACACTCTAAGATAT+GGG - chr4_2:9305155-9305174 None:intergenic 35.0%
!! TGTCAACACACTCTAAGATA+TGG - chr4_2:9305156-9305175 None:intergenic 35.0%
! TGTGGGTTTAGGATCAAAAA+TGG - chr4_2:9305236-9305255 None:intergenic 35.0%
ACATTGAGTTATGTGGGTTT+AGG - chr4_2:9305247-9305266 None:intergenic 35.0%
GTGCTAACATTGAGTTATGT+GGG - chr4_2:9305253-9305272 None:intergenic 35.0%
TGTGCTAACATTGAGTTATG+TGG - chr4_2:9305254-9305273 None:intergenic 35.0%
TAACTCAATGTTAGCACACT+TGG + chr4_2:9305256-9305275 Msa0587690:intron 35.0%
AGTACTTCCTTCCAATATGT+AGG + chr4_2:9305290-9305309 Msa0587690:intron 35.0%
ATGACACTTCACCTACATAT+TGG - chr4_2:9305304-9305323 None:intergenic 35.0%
! ATTCTAACTTGTCAGCTAGA+TGG - chr4_2:9305582-9305601 None:intergenic 35.0%
GCATCAATGTTCACATAAAG+AGG + chr4_2:9305733-9305752 Msa0587690:intron 35.0%
CTACATGGGAAATACTACTT+GGG - chr4_2:9305780-9305799 None:intergenic 35.0%
TCTACATGGGAAATACTACT+TGG - chr4_2:9305781-9305800 None:intergenic 35.0%
!!! TTAGTGCTGGTGGTTATTTT+GGG - chr4_2:9305862-9305881 None:intergenic 35.0%
!! ACAGTTTGTTTTCCACAAGA+TGG + chr4_2:9305946-9305965 Msa0587690:intron 35.0%
CTCAAACTATTACCATCTTG+TGG - chr4_2:9305961-9305980 None:intergenic 35.0%
CACAAGATGGTAATAGTTTG+AGG + chr4_2:9305959-9305978 Msa0587690:intron 35.0%
AGATACGGATCATAAGAAAC+TGG - chr4_2:9306191-9306210 None:intergenic 35.0%
!! TGTTGGTTTGACAATAACGA+CGG - chr4_2:9306338-9306357 None:intergenic 35.0%
ATCACTGGAGAAGATTATGT+TGG - chr4_2:9306355-9306374 None:intergenic 35.0%
AAGAGAAATTAATCTCCGCA+CGG - chr4_2:9306524-9306543 None:intergenic 35.0%
AGAAGAGCTACATATTTCCT+TGG + chr4_2:9306624-9306643 Msa0587690:intron 35.0%
TGATGCTGAATTTGCAGAAA+TGG - chr4_2:9306755-9306774 None:intergenic 35.0%
GGAACTGAACTTGAATAATG+GGG + chr4_2:9304725-9304744 Msa0587690:intron 35.0%
GAATTTAGGTCAGTGTCTAA+TGG + chr4_2:9306865-9306884 Msa0587690:intron 35.0%
ATGAGAAGGGAAATAGAAAG+GGG - chr4_2:9304876-9304895 None:intergenic 35.0%
GAATGAGAAGGGAAATAGAA+AGG - chr4_2:9304878-9304897 None:intergenic 35.0%
AGGGGTTATAAGAATGAGAA+GGG - chr4_2:9304889-9304908 None:intergenic 35.0%
AAGGGGTTATAAGAATGAGA+AGG - chr4_2:9304890-9304909 None:intergenic 35.0%
! ATGTGTTTCTGTAATGAACC+TGG - chr4_2:9307063-9307082 None:intergenic 35.0%
ACAGAAACACATACACTCTT+CGG + chr4_2:9307071-9307090 Msa0587690:intron 35.0%
TAATTATGTCAGTGTCGTGT+CGG - chr4_2:9307131-9307150 None:intergenic 35.0%
! TCATCAATCTGAAGTGTTTG+TGG - chr4_2:9307225-9307244 None:intergenic 35.0%
TTAACCTCTACTGAATTCAG+GGG + chr4_2:9307414-9307433 Msa0587690:intron 35.0%
CACAAACAAGTGAATGAATC+AGG - chr4_2:9307535-9307554 None:intergenic 35.0%
TAGTTGTCATTAACTGCATC+AGG + chr4_2:9307739-9307758 Msa0587690:intron 35.0%
TTCAAACTCCAAACTGTATC+CGG + chr4_2:9308352-9308371 Msa0587690:intron 35.0%
GATCTCTCCAATCAAATTCT+TGG - chr4_2:9308616-9308635 None:intergenic 35.0%
GTAATCACATGCCAAACTAA+TGG - chr4_2:9308672-9308691 None:intergenic 35.0%
AAAAGTTGGAAGTCTCACAT+TGG + chr4_2:9308742-9308761 Msa0587690:intron 35.0%
!!! TCTTTTTAGCTGGTTTTGCA+TGG + chr4_2:9308803-9308822 Msa0587690:intron 35.0%
!! TGGTTTTGCATGGTTAAGTA+AGG + chr4_2:9308813-9308832 Msa0587690:intron 35.0%
TCTTGCAGTTAGAAACCTTA+TGG + chr4_2:9308933-9308952 Msa0587690:intron 35.0%
!!! AGAGGAATGTCTTTTTTCTG+AGG + chr4_2:9308965-9308984 Msa0587690:intron 35.0%
! TGATTTTGGATTCCTATCAG+GGG + chr4_2:9309072-9309091 Msa0587690:intron 35.0%
GTCATACCACTATCTAATGT+GGG - chr4_2:9309191-9309210 None:intergenic 35.0%
AGTCATACCACTATCTAATG+TGG - chr4_2:9309192-9309211 None:intergenic 35.0%
! TTGGCAAGAAATTTTGCCTT+TGG - chr4_2:9309375-9309394 None:intergenic 35.0%
CAGTGTAACCATGTAAATTC+AGG - chr4_2:9309412-9309431 None:intergenic 35.0%
CTGAATTTACATGGTTACAC+TGG + chr4_2:9309410-9309429 Msa0587690:intron 35.0%
GAACACAGCCACAAAATAAT+TGG - chr4_2:9309476-9309495 None:intergenic 35.0%
AATGATGACTGATATTTGGG+TGG + chr4_2:9309575-9309594 Msa0587690:intron 35.0%
AGAGTTAACAGATCAAGCTT+TGG - chr4_2:9309670-9309689 None:intergenic 35.0%
TGTTAACTCTTTGCATCATG+TGG + chr4_2:9309680-9309699 Msa0587690:three_prime_UTR 35.0%
TCATGTGGTGTTCAATTTCA+AGG + chr4_2:9309695-9309714 Msa0587690:three_prime_UTR 35.0%
! TCTTTTGGATAGCTGCTAAA+TGG + chr4_2:9309734-9309753 Msa0587690:three_prime_UTR 35.0%
TCTTCTTGTAATCGACATGC+AGG + chr4_2:9304128-9304147 Msa0587690:CDS 40.0%
GAGAGTCCTGTACAAGTAAA+AGG + chr4_2:9304255-9304274 Msa0587690:CDS 40.0%
AGTCCTGTACAAGTAAAAGG+AGG + chr4_2:9304258-9304277 Msa0587690:CDS 40.0%
GTCCTGTACAAGTAAAAGGA+GGG + chr4_2:9304259-9304278 Msa0587690:CDS 40.0%
! TTCCCTCCTTTTACTTGTAC+AGG - chr4_2:9304264-9304283 None:intergenic 40.0%
TGTTGTCCCAAATGTGATCA+AGG + chr4_2:9304287-9304306 Msa0587690:CDS 40.0%
AGCGTGGAATTCTCATTGTT+TGG + chr4_2:9304328-9304347 Msa0587690:intron 40.0%
GCGTGGAATTCTCATTGTTT+GGG + chr4_2:9304329-9304348 Msa0587690:intron 40.0%
!! GATTAGTCTCACATCGACTA+CGG + chr4_2:9304426-9304445 Msa0587690:intron 40.0%
!!! TAATGCCATAAGGTTTTGGG+TGG + chr4_2:9304496-9304515 Msa0587690:intron 40.0%
CATATCCACCCAAAACCTTA+TGG - chr4_2:9304504-9304523 None:intergenic 40.0%
!!! TAAGGTTTTGGGTGGATATG+TGG + chr4_2:9304504-9304523 Msa0587690:intron 40.0%
!! TGTGGTGTCAAAGTTTTTGG+CGG + chr4_2:9304522-9304541 Msa0587690:intron 40.0%
TGAGAAGGGAAATAGAAAGG+GGG - chr4_2:9304875-9304894 None:intergenic 40.0%
!! AGGTTGATTTTTAATGGGGG+TGG - chr4_2:9304962-9304981 None:intergenic 40.0%
TAACTTCAACCTTGAGGACA+AGG - chr4_2:9304982-9305001 None:intergenic 40.0%
TTGTCCTCAAGGTTGAAGTT+AGG + chr4_2:9304981-9305000 Msa0587690:intron 40.0%
TTGTCCTAACTTCAACCTTG+AGG - chr4_2:9304988-9305007 None:intergenic 40.0%
TTGGAAAGATCCGCTTAACT+TGG - chr4_2:9305048-9305067 None:intergenic 40.0%
TTCCTCACAATTCAAGCTGT+GGG - chr4_2:9305095-9305114 None:intergenic 40.0%
ATAGAACAATCATCACCACC+TGG + chr4_2:9305127-9305146 Msa0587690:intron 40.0%
CACTTCACCTACATATTGGA+AGG - chr4_2:9305300-9305319 None:intergenic 40.0%
GTTTCAAAGGATGTTGTTGC+TGG - chr4_2:9305437-9305456 None:intergenic 40.0%
GTTATAGCAGCATACACAAG+TGG - chr4_2:9305499-9305518 None:intergenic 40.0%
TGTTCACATAAAGAGGGACT+TGG + chr4_2:9305740-9305759 Msa0587690:intron 40.0%
!!! CTTAGTGCTGGTGGTTATTT+TGG - chr4_2:9305863-9305882 None:intergenic 40.0%
! ATTCATATGCTTAGTGCTGG+TGG - chr4_2:9305872-9305891 None:intergenic 40.0%
GTGATTCATATGCTTAGTGC+TGG - chr4_2:9305875-9305894 None:intergenic 40.0%
ACAATAGGACACAGAGAAGT+TGG + chr4_2:9305893-9305912 Msa0587690:intron 40.0%
TTTCTCTGTCAAAGTGAGAC+AGG + chr4_2:9305987-9306006 Msa0587690:intron 40.0%
TTCTCTGTCAAAGTGAGACA+GGG + chr4_2:9305988-9306007 Msa0587690:intron 40.0%
TCAAATTGTAAGGAATCGCG+AGG + chr4_2:9306031-9306050 Msa0587690:intron 40.0%
CAAATTGTAAGGAATCGCGA+GGG + chr4_2:9306032-9306051 Msa0587690:intron 40.0%
GTCATATGGGAAGTTACGTA+TGG + chr4_2:9306099-9306118 Msa0587690:intron 40.0%
TTTCGAAGTTGTTCCGTTGA+GGG + chr4_2:9306274-9306293 Msa0587690:intron 40.0%
TTTGACAATAACGACGGAGA+CGG - chr4_2:9306332-9306351 None:intergenic 40.0%
ATTGAGCGACATTCTATCAC+TGG - chr4_2:9306370-9306389 None:intergenic 40.0%
GTGATAGAATGTCGCTCAAT+TGG + chr4_2:9306370-9306389 Msa0587690:intron 40.0%
AGAGATCGATGCATCTGAAT+CGG - chr4_2:9306443-9306462 None:intergenic 40.0%
TCTCTTGACGATTCAACAAC+AGG + chr4_2:9306538-9306557 Msa0587690:intron 40.0%
CTCTTGACGATTCAACAACA+GGG + chr4_2:9306539-9306558 Msa0587690:intron 40.0%
GAAATATGTAGCTCTTCTCG+TGG - chr4_2:9306622-9306641 None:intergenic 40.0%
TGCTGAATTTGCAGAAATGG+AGG - chr4_2:9306752-9306771 None:intergenic 40.0%
! TGGTGCTTTCATTTTCACCA+TGG - chr4_2:9306797-9306816 None:intergenic 40.0%
TGAGAAGGGAAATAGAAAGG+GGG - chr4_2:9304875-9304894 None:intergenic 40.0%
ATCACGCATCTTAGGTTAAG+GGG - chr4_2:9307025-9307044 None:intergenic 40.0%
CATCACGCATCTTAGGTTAA+GGG - chr4_2:9307026-9307045 None:intergenic 40.0%
ACATCACGCATCTTAGGTTA+AGG - chr4_2:9307027-9307046 None:intergenic 40.0%
TTAACCTAAGATGCGTGATG+TGG + chr4_2:9307026-9307045 Msa0587690:intron 40.0%
TCTCAAATTATTGCCGGTGT+CGG + chr4_2:9307169-9307188 Msa0587690:intron 40.0%
ATGACATGTCTGACACATGT+CGG + chr4_2:9307241-9307260 Msa0587690:intron 40.0%
TGGAAATATTCTGCTAGCGA+AGG + chr4_2:9307486-9307505 Msa0587690:intron 40.0%
AGTTCAACATCTCTTCCCAA+GGG - chr4_2:9307868-9307887 None:intergenic 40.0%
GAGATGTTGAACTCTTTCGT+CGG + chr4_2:9307875-9307894 Msa0587690:CDS 40.0%
CTATATGCAGAAGGGAAAGT+TGG + chr4_2:9307901-9307920 Msa0587690:CDS 40.0%
! GAAGGTGCAGAATTAGTTGA+TGG + chr4_2:9307943-9307962 Msa0587690:CDS 40.0%
CACCTTCATTCATTCCTTCA+AGG + chr4_2:9308030-9308049 Msa0587690:CDS 40.0%
CACCTTGAAGGAATGAATGA+AGG - chr4_2:9308035-9308054 None:intergenic 40.0%
!! TATTGATTCCTGCACCTTGA+AGG - chr4_2:9308047-9308066 None:intergenic 40.0%
GCATCAACAAGAACAGTAAC+AGG - chr4_2:9308414-9308433 None:intergenic 40.0%
! ACCAAGATGAATTTCAGGTG+TGG - chr4_2:9308448-9308467 None:intergenic 40.0%
AAAACCAGCTAAAAAGAGCG+AGG - chr4_2:9308800-9308819 None:intergenic 40.0%
TCATCTTGCAGTAAGCAAGA+GGG + chr4_2:9308898-9308917 Msa0587690:intron 40.0%
! ACCTTATGGTTTGCACAAAG+AGG + chr4_2:9308947-9308966 Msa0587690:intron 40.0%
TCCTCTTTGTGCAAACCATA+AGG - chr4_2:9308951-9308970 None:intergenic 40.0%
! GTATATTGGTTATAAGGGGG+AGG + chr4_2:9309213-9309232 Msa0587690:intron 40.0%
CAACCCCAACATTACAAGAA+TGG + chr4_2:9309637-9309656 Msa0587690:CDS 40.0%
GCTCCATTCTTGTAATGTTG+GGG - chr4_2:9309643-9309662 None:intergenic 40.0%
CGCTCCATTCTTGTAATGTT+GGG - chr4_2:9309644-9309663 None:intergenic 40.0%
TCGCTCCATTCTTGTAATGT+TGG - chr4_2:9309645-9309664 None:intergenic 40.0%
CCACAGCCTTGATCACATTT+GGG - chr4_2:9304296-9304315 None:intergenic 45.0%
TCCACAGCCTTGATCACATT+TGG - chr4_2:9304297-9304316 None:intergenic 45.0%
GTCACGCATCTTAGGTTAAG+GGG - chr4_2:9304907-9304926 None:intergenic 45.0%
CGTCACGCATCTTAGGTTAA+GGG - chr4_2:9304908-9304927 None:intergenic 45.0%
ACGTCACGCATCTTAGGTTA+AGG - chr4_2:9304909-9304928 None:intergenic 45.0%
TTAACCTAAGATGCGTGACG+TGG + chr4_2:9304908-9304927 Msa0587690:intron 45.0%
GGGTGGTATTGTAATGAACC+TGG - chr4_2:9304945-9304964 None:intergenic 45.0%
CAAGTGACCTCCAAGTTAAG+CGG + chr4_2:9305035-9305054 Msa0587690:intron 45.0%
! GAAAGATCCGCTTAACTTGG+AGG - chr4_2:9305045-9305064 None:intergenic 45.0%
ACAATTCAAGCTGTGGGATC+CGG - chr4_2:9305089-9305108 None:intergenic 45.0%
ATCCCACAGCTTGAATTGTG+AGG + chr4_2:9305090-9305109 Msa0587690:intron 45.0%
GTTCCTCACAATTCAAGCTG+TGG - chr4_2:9305096-9305115 None:intergenic 45.0%
! TCTAAGATATGGGATCCAGG+TGG - chr4_2:9305145-9305164 None:intergenic 45.0%
!! CACTCTAAGATATGGGATCC+AGG - chr4_2:9305148-9305167 None:intergenic 45.0%
AGTGCAGATCACAGAGAGTT+GGG - chr4_2:9305199-9305218 None:intergenic 45.0%
AAGTGCAGATCACAGAGAGT+TGG - chr4_2:9305200-9305219 None:intergenic 45.0%
GCGTCCCATGCTAATTGAAT+AGG + chr4_2:9305331-9305350 Msa0587690:intron 45.0%
!! TTGTCAGCTAGATGGTGGAA+AGG - chr4_2:9305574-9305593 None:intergenic 45.0%
! CTAACTTGTCAGCTAGATGG+TGG - chr4_2:9305579-9305598 None:intergenic 45.0%
AAGAGGGACTTGGACATGAA+AGG + chr4_2:9305750-9305769 Msa0587690:intron 45.0%
!!! GCTGGTGGTTATTTTGGGTA+TGG - chr4_2:9305857-9305876 None:intergenic 45.0%
AACTGTGCAAGAGTTGCTAC+TGG - chr4_2:9305932-9305951 None:intergenic 45.0%
TCGAATGATCCTGGGTCATA+TGG + chr4_2:9306085-9306104 Msa0587690:intron 45.0%
CGAATGATCCTGGGTCATAT+GGG + chr4_2:9306086-9306105 Msa0587690:intron 45.0%
ACGTATGGTTAACGCATGAG+TGG + chr4_2:9306114-9306133 Msa0587690:intron 45.0%
TGAGTCGCATCATGTAGAAG+TGG + chr4_2:9306145-9306164 Msa0587690:intron 45.0%
CTCAACGGAACAACTTCGAA+AGG - chr4_2:9306275-9306294 None:intergenic 45.0%
CTTTCGAAGTTGTTCCGTTG+AGG + chr4_2:9306273-9306292 Msa0587690:intron 45.0%
AGAAATTAATCTCCGCACGG+CGG - chr4_2:9306521-9306540 None:intergenic 45.0%
! TGGTGTTGAGAACTCATCCA+AGG - chr4_2:9306644-9306663 None:intergenic 45.0%
TGGATGAGTTCTCAACACCA+TGG + chr4_2:9306644-9306663 Msa0587690:intron 45.0%
GGATGAGTTCTCAACACCAT+GGG + chr4_2:9306645-9306664 Msa0587690:intron 45.0%
GACACATTATTGCAGCGACA+GGG - chr4_2:9306688-9306707 None:intergenic 45.0%
CATCAATCTATGCTCTGCCA+TGG + chr4_2:9306777-9306796 Msa0587690:intron 45.0%
GATGTGGCAGTTTCTTATCC+AGG + chr4_2:9307042-9307061 Msa0587690:intron 45.0%
! TCTTCGGATTAGACGTGTCT+TGG + chr4_2:9307087-9307106 Msa0587690:intron 45.0%
! GATTAGACGTGTCTTGGTGT+AGG + chr4_2:9307093-9307112 Msa0587690:intron 45.0%
GTGTTTGTGGCTATGAAGCA+CGG - chr4_2:9307212-9307231 None:intergenic 45.0%
ACTGCATCAGGACATGATTG+TGG + chr4_2:9307751-9307770 Msa0587690:intron 45.0%
CGTCTCTTTCATACTGTCTC+AGG + chr4_2:9307825-9307844 Msa0587690:intron 45.0%
GAGTTCAACATCTCTTCCCA+AGG - chr4_2:9307869-9307888 None:intergenic 45.0%
GTCGGCATCTATATGCAGAA+GGG + chr4_2:9307893-9307912 Msa0587690:CDS 45.0%
! AAAGTTGGTCCGACCTCAAA+AGG + chr4_2:9307916-9307935 Msa0587690:CDS 45.0%
!!! CCTTCAGTTCCTTTTGAGGT+CGG - chr4_2:9307928-9307947 None:intergenic 45.0%
! TGCACCTTCAGTTCCTTTTG+AGG - chr4_2:9307932-9307951 None:intergenic 45.0%
CATTCATTCCTTCAAGGTGC+AGG + chr4_2:9308036-9308055 Msa0587690:intron 45.0%
AGGTGCAGGAATCAATAGTC+TGG + chr4_2:9308050-9308069 Msa0587690:intron 45.0%
TGCAGGAATCAATAGTCTGG+TGG + chr4_2:9308053-9308072 Msa0587690:intron 45.0%
ATCAATAGTCTGGTGGTCAC+TGG + chr4_2:9308060-9308079 Msa0587690:intron 45.0%
ACAGTTTGCCGGATACAGTT+TGG - chr4_2:9308363-9308382 None:intergenic 45.0%
TGTCTTTGACGCTGTAGCAT+TGG + chr4_2:9308380-9308399 Msa0587690:intron 45.0%
GCCACACCTGAAATTCATCT+TGG + chr4_2:9308444-9308463 Msa0587690:CDS 45.0%
!! TGATCCTCGCTCTTTTTAGC+TGG + chr4_2:9308793-9308812 Msa0587690:intron 45.0%
!! CAAGATGACTCGATAGTGGA+TGG - chr4_2:9308886-9308905 None:intergenic 45.0%
ACTGCAAGATGACTCGATAG+TGG - chr4_2:9308890-9308909 None:intergenic 45.0%
GTCATCTTGCAGTAAGCAAG+AGG + chr4_2:9308897-9308916 Msa0587690:intron 45.0%
CATCTTGCAGTAAGCAAGAG+GGG + chr4_2:9308899-9308918 Msa0587690:intron 45.0%
! GTGCTCTAGATGTCTAGTCT+AGG + chr4_2:9309147-9309166 Msa0587690:intron 45.0%
GAGAGTCCCACATTAGATAG+TGG + chr4_2:9309182-9309201 Msa0587690:intron 45.0%
! CAAGTGTGTTGACATGCTTG+AGG + chr4_2:9309323-9309342 Msa0587690:intron 45.0%
CTTGAGGGAAGCTAGAGTAT+CGG - chr4_2:9309498-9309517 None:intergenic 45.0%
GCAAATTCTACCTGCCTTGA+GGG - chr4_2:9309513-9309532 None:intergenic 45.0%
AGCAAATTCTACCTGCCTTG+AGG - chr4_2:9309514-9309533 None:intergenic 45.0%
AATTGCACTCATCTCCCTTG+AGG + chr4_2:9309955-9309974 Msa0587690:three_prime_UTR 45.0%
CCCAAATGTGATCAAGGCTG+TGG + chr4_2:9304293-9304312 Msa0587690:CDS 50.0%
GTGGAAATTGCTAGACAGCG+TGG + chr4_2:9304312-9304331 Msa0587690:CDS 50.0%
! TTGGAAGTCTTGGGGAGTGT+CGG - chr4_2:9304576-9304595 None:intergenic 50.0%
GACGTGGCAGTTTCTTATCC+AGG + chr4_2:9304924-9304943 Msa0587690:intron 50.0%
CAATTCAAGCTGTGGGATCC+GGG - chr4_2:9305088-9305107 None:intergenic 50.0%
GTGCAGATCACAGAGAGTTG+GGG - chr4_2:9305198-9305217 None:intergenic 50.0%
CAGCATACACAAGTGGTGAG+AGG - chr4_2:9305492-9305511 None:intergenic 50.0%
ATCGCGAGGGTTGCTTACTT+TGG + chr4_2:9306045-9306064 Msa0587690:intron 50.0%
TCGCGAGGGTTGCTTACTTT+GGG + chr4_2:9306046-9306065 Msa0587690:intron 50.0%
! CTTACTTTGGGTATTGCCGC+TGG + chr4_2:9306058-9306077 Msa0587690:intron 50.0%
AGGATCATTCGACACACCAG+CGG - chr4_2:9306077-9306096 None:intergenic 50.0%
CTGGTGTGTCGAATGATCCT+GGG + chr4_2:9306077-9306096 Msa0587690:intron 50.0%
CGTAACTTCCCATATGACCC+AGG - chr4_2:9306097-9306116 None:intergenic 50.0%
! GACGGTTTTGCTTCCCTCAA+CGG - chr4_2:9306290-9306309 None:intergenic 50.0%
GTTGAGGGAAGCAAAACCGT+CGG + chr4_2:9306289-9306308 Msa0587690:intron 50.0%
!!! GGATGCTCTTTTGGAACCGA+CGG - chr4_2:9306308-9306327 None:intergenic 50.0%
TGGTGTGATGAACTCGTGTC+AGG - chr4_2:9306602-9306621 None:intergenic 50.0%
TCAACACCATGGGAAGAGAC+TGG + chr4_2:9306655-9306674 Msa0587690:intron 50.0%
TTACCACCAGTCTCTTCCCA+TGG - chr4_2:9306664-9306683 None:intergenic 50.0%
GGACACATTATTGCAGCGAC+AGG - chr4_2:9306689-9306708 None:intergenic 50.0%
ACTGCCACATCACGCATCTT+AGG - chr4_2:9307033-9307052 None:intergenic 50.0%
GTGGCTATGAAGCACGGATA+CGG - chr4_2:9307206-9307225 None:intergenic 50.0%
!! TGACACATGTCGGTGTCATG+TGG + chr4_2:9307251-9307270 Msa0587690:intron 50.0%
CGTCGGCATCTATATGCAGA+AGG + chr4_2:9307892-9307911 Msa0587690:CDS 50.0%
CCGACCTCAAAAGGAACTGA+AGG + chr4_2:9307925-9307944 Msa0587690:CDS 50.0%
! ACACGCATGTGACTCTGAGA+AGG + chr4_2:9308181-9308200 Msa0587690:intron 50.0%
CAGCGTCAAAGACAGTTTGC+CGG - chr4_2:9308374-9308393 None:intergenic 50.0%
! TTCTGAGGAGCTCTTGCTCT+AGG + chr4_2:9308980-9308999 Msa0587690:intron 50.0%
TCTGAGGAGCTCTTGCTCTA+GGG + chr4_2:9308981-9309000 Msa0587690:intron 50.0%
GACTCTGATACACCCCTGAT+AGG - chr4_2:9309087-9309106 None:intergenic 50.0%
CATCCGTTATTTGGCCACGT+GGG + chr4_2:9309122-9309141 Msa0587690:intron 50.0%
! CGATACTCTAGCTTCCCTCA+AGG + chr4_2:9309496-9309515 Msa0587690:intron 50.0%
!! GAGTGTCGGGAGCAACAACA+AGG - chr4_2:9304562-9304581 None:intergenic 55.0%
!! TGGAAGTCTTGGGGAGTGTC+GGG - chr4_2:9304575-9304594 None:intergenic 55.0%
ACTGCCACGTCACGCATCTT+AGG - chr4_2:9304915-9304934 None:intergenic 55.0%
GCTGGTGTGTCGAATGATCC+TGG + chr4_2:9306076-9306095 Msa0587690:intron 55.0%
GACAATAACGACGGAGACGG+CGG - chr4_2:9306329-9306348 None:intergenic 55.0%
CGATGCATCTGAATCGGCGA+AGG - chr4_2:9306437-9306456 None:intergenic 55.0%
ACACCATGGGAAGAGACTGG+TGG + chr4_2:9306658-9306677 Msa0587690:intron 55.0%
CGCTCCCCTGAATTCAGTAG+AGG - chr4_2:9307421-9307440 None:intergenic 55.0%
AGTACGCGAACACGATCCCT+TGG + chr4_2:9307849-9307868 Msa0587690:CDS 55.0%
GTACGCGAACACGATCCCTT+GGG + chr4_2:9307850-9307869 Msa0587690:CDS 55.0%
CTTGCAGTAAGCAAGAGGGG+AGG + chr4_2:9308902-9308921 Msa0587690:intron 55.0%
! CCACGTGGCCAAATAACGGA+TGG - chr4_2:9309124-9309143 None:intergenic 55.0%
CCATCCGTTATTTGGCCACG+TGG + chr4_2:9309121-9309140 Msa0587690:intron 55.0%
CGACCCACGTGGCCAAATAA+CGG - chr4_2:9309128-9309147 None:intergenic 55.0%
! ACTCTAGCTTCCCTCAAGGC+AGG + chr4_2:9309500-9309519 Msa0587690:intron 55.0%
TTCAAGCTGTGGGATCCGGG+AGG - chr4_2:9305085-9305104 None:intergenic 60.0%
! GGAGACGGCGGATGCTCTTT+TGG - chr4_2:9306317-9306336 None:intergenic 60.0%
GGACATTGACACGCCGACAC+CGG - chr4_2:9307185-9307204 None:intergenic 60.0%
! CATCTAGAGCACGACCCACG+TGG - chr4_2:9309139-9309158 None:intergenic 60.0%
CTCGCGACAATTCCGCCGTG+CGG + chr4_2:9306506-9306525 Msa0587690:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 9304055 9309993 9304055 ID=Msa0587690;Name=Msa0587690
chr4_2 mRNA 9304055 9309993 9304055 ID=Msa0587690-mRNA-1;Parent=Msa0587690;Name=Msa0587690-mRNA-1;_AED=0.09;_eAED=0.09;_QI=47|0.5|0.4|1|0.75|0.6|5|316|167
chr4_2 exon 9304055 9304149 9304055 ID=Msa0587690-mRNA-1:exon:2557;Parent=Msa0587690-mRNA-1
chr4_2 exon 9304237 9304344 9304237 ID=Msa0587690-mRNA-1:exon:2558;Parent=Msa0587690-mRNA-1
chr4_2 exon 9307847 9308051 9307847 ID=Msa0587690-mRNA-1:exon:2559;Parent=Msa0587690-mRNA-1
chr4_2 exon 9308397 9308465 9308397 ID=Msa0587690-mRNA-1:exon:2560;Parent=Msa0587690-mRNA-1
chr4_2 exon 9309604 9309993 9309604 ID=Msa0587690-mRNA-1:exon:2561;Parent=Msa0587690-mRNA-1
chr4_2 five_prime_UTR 9304055 9304101 9304055 ID=Msa0587690-mRNA-1:five_prime_utr;Parent=Msa0587690-mRNA-1
chr4_2 CDS 9304102 9304149 9304102 ID=Msa0587690-mRNA-1:cds;Parent=Msa0587690-mRNA-1
chr4_2 CDS 9304237 9304344 9304237 ID=Msa0587690-mRNA-1:cds;Parent=Msa0587690-mRNA-1
chr4_2 CDS 9307847 9308051 9307847 ID=Msa0587690-mRNA-1:cds;Parent=Msa0587690-mRNA-1
chr4_2 CDS 9308397 9308465 9308397 ID=Msa0587690-mRNA-1:cds;Parent=Msa0587690-mRNA-1
chr4_2 CDS 9309604 9309677 9309604 ID=Msa0587690-mRNA-1:cds;Parent=Msa0587690-mRNA-1
chr4_2 three_prime_UTR 9309678 9309993 9309678 ID=Msa0587690-mRNA-1:three_prime_utr;Parent=Msa0587690-mRNA-1
Gene Sequence

>Msa0587690

ATGACAGAGAATTGGAATAACACGGCTCTTCTTGTAATCGACATGCAGAAAGATTTTATAAAAGATGAGAGTCCTGTACAAGTAAAAGGAGGGAAAGATGTTGTCCCAAATGTGATCAAGGCTGTGGAAATTGCTAGACAGCGTGGAATTCTCATTGTAGTACGCGAACACGATCCCTTGGGAAGAGATGTTGAACTCTTTCGTCGGCATCTATATGCAGAAGGGAAAGTTGGTCCGACCTCAAAAGGAACTGAAGGTGCAGAATTAGTTGATGGACTTCTTATTAAAGAAGGGGATTATAAAGTTGTGAAGACAAGGTTTAGTGCATTCTTTTCTACACACCTTCATTCATTCCTTCAAGCATTGGATTATCAACCTGTTACTGTTCTTGTTGATGCTACAGCAGCAGCCACACCTGAAATTCATCTTGCCAATGTGTTAGACATGAAAAATATAGGAGTTGCAACCCCAACATTACAAGAATGGAGCGAATCCAAAGCTTGA

Protein sequence

>Msa0587690

MTENWNNTALLVIDMQKDFIKDESPVQVKGGKDVVPNVIKAVEIARQRGILIVVREHDPLGRDVELFRRHLYAEGKVGPTSKGTEGAELVDGLLIKEGDYKVVKTRFSAFFSTHLHSFLQALDYQPVTVLVDATAAATPEIHLANVLDMKNIGVATPTLQEWSESKA*