AlfalfaGEDB | Msa0562940

M. sativa cultivar zhongmu-4 / Msa0562940

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562940	XP_013446505.1	93.966	116	7	0	1	116	75	190	2.05e-60	193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562940	A0A072TSY4	93.966	116	7	0	1	116	75	190	9.80e-61	193

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029260	Msa0562940	0.835188	1.940439e-56	-8.615850e-47
Msa0030300	Msa0562940	0.812735	3.651347e-51	-8.615850e-47
Msa0033880	Msa0562940	0.818673	1.734009e-52	-8.615850e-47
Msa0037160	Msa0562940	0.817807	2.723048e-52	-8.615850e-47
Msa0037840	Msa0562940	0.810083	1.375076e-50	-8.615850e-47
Msa0055150	Msa0562940	0.809756	1.616718e-50	-8.615850e-47
Msa0057140	Msa0562940	0.800784	1.224890e-48	-8.615850e-47
Msa0090520	Msa0562940	0.805476	1.310849e-49	-8.615850e-47
Msa0127850	Msa0562940	0.819876	9.226179e-53	-8.615850e-47
Msa0137990	Msa0562940	0.802476	5.509270e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562940	MtrunA17_Chr8g0376831	93.966	116	7	0	1	116	75	190	1.89e-64	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCAAACCTTGTCTTGT+TGG	0.327280	4_1:-63218212	None:intergenic
AAGTCAAAAGGAGATAAGCA+AGG	0.623892	4_1:-63217834	None:intergenic
AATCAAGAAGGGAGAAGGGG+TGG	0.615870	4_1:+63217767	Msa0562940:five_prime_UTR
ACCAAATGCAGTGCCAAACT+CGG	0.524803	4_1:+63218047	Msa0562940:CDS
ACCAATCTAGAGAGAATGAA+AGG	0.560310	4_1:+63218073	Msa0562940:CDS
ACTATGAATTCTTCTGCAAG+AGG	0.591142	4_1:+63217685	Msa0562940:five_prime_UTR
AGAATGAAAGGAAGAACAAA+AGG	0.442868	4_1:+63218085	Msa0562940:CDS
AGCTTTCCGTCTAAGAGAAA+TGG	0.454513	4_1:+63217872	Msa0562940:CDS
ATGTTCTATGCAGGCCAAGA+AGG	0.482623	4_1:+63218020	Msa0562940:intron
CACTATCTTCGCAATGTGGT+TGG	0.538774	4_1:+63217735	Msa0562940:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGTAAGTCAATATAAGCTT+TGG	+	chr4_1:63217658-63217677	Msa0562940:five_prime_UTR	30.0%
TTGCAGAAGAATTCATAGTA+CGG	-	chr4_1:63217684-63217703	None:intergenic	30.0%
AGAATGAAAGGAAGAACAAA+AGG	+	chr4_1:63218085-63218104	Msa0562940:CDS	30.0%
TTTCTTTCTTTCAGAAAAGG+AGG	+	chr4_1:63218362-63218381	Msa0562940:intron	30.0%
TTCTTTCTTTCAGAAAAGGA+GGG	+	chr4_1:63218363-63218382	Msa0562940:intron	30.0%
TCGTAAGTCAATATAAGCTT+TGG	+	chr4_1:63217658-63217677	Msa0562940:five_prime_UTR	30.0%
TTGCAGAAGAATTCATAGTA+CGG	-	chr4_1:63217684-63217703	None:intergenic	30.0%
AGAATGAAAGGAAGAACAAA+AGG	+	chr4_1:63218085-63218104	Msa0562940:CDS	30.0%
TTTCTTTCTTTCAGAAAAGG+AGG	+	chr4_1:63218362-63218381	Msa0562940:intron	30.0%
TTCTTTCTTTCAGAAAAGGA+GGG	+	chr4_1:63218363-63218382	Msa0562940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	63217545	63218573	63217545	ID=Msa0562940;Name=Msa0562940
chr4_1	mRNA	63217545	63218573	63217545	ID=Msa0562940-mRNA-1;Parent=Msa0562940;Name=Msa0562940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=274\|1\|1\|1\|1\|1\|3\|135\|116
chr4_1	exon	63217545	63217914	63217545	ID=Msa0562940-mRNA-1:exon:20014;Parent=Msa0562940-mRNA-1
chr4_1	exon	63218033	63218224	63218033	ID=Msa0562940-mRNA-1:exon:20015;Parent=Msa0562940-mRNA-1
chr4_1	exon	63218376	63218573	63218376	ID=Msa0562940-mRNA-1:exon:20016;Parent=Msa0562940-mRNA-1
chr4_1	five_prime_UTR	63217545	63217818	63217545	ID=Msa0562940-mRNA-1:five_prime_utr;Parent=Msa0562940-mRNA-1
chr4_1	CDS	63217819	63217914	63217819	ID=Msa0562940-mRNA-1:cds;Parent=Msa0562940-mRNA-1
chr4_1	CDS	63218033	63218224	63218033	ID=Msa0562940-mRNA-1:cds;Parent=Msa0562940-mRNA-1
chr4_1	CDS	63218376	63218438	63218376	ID=Msa0562940-mRNA-1:cds;Parent=Msa0562940-mRNA-1
chr4_1	three_prime_UTR	63218439	63218573	63218439	ID=Msa0562940-mRNA-1:three_prime_utr;Parent=Msa0562940-mRNA-1

Gene Sequence	>Msa0562940 ATGAATGAGAAAAAACCTTGCTTATCTCCTTTTGACTTGAATGTATTAAGTGAAGCTTTCCGTCTAAGAGAAATGGATCCAAATCACCTTTCTTGTGCCAAGAAGGGGCTACCAAATGCAGTGCCAAACTCGGCAAACCAATCTAGAGAGAATGAAAGGAAGAACAAAAGGCATGAAAAACACGAGAAGCACAAGCTACTACGAATTAAAAATGGAAGTTGTGTTGATAATAACACAATTAGACACAATAATTCTCAGCCTTCGCCGTTGACAAACCAACAAGACAAGAAAAGGAGGGCTGAAACAAGCAACAATCCTTCTGTTTGCAAGCGATCAAATACTCGACAATGA
Protein sequence	>Msa0562940 MNEKKPCLSPFDLNVLSEAFRLREMDPNHLSCAKKGLPNAVPNSANQSRENERKNKRHEKHEKHKLLRIKNGSCVDNNTIRHNNSQPSPLTNQQDKKRRAETSNNPSVCKRSNTRQ*